CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029492	Escherichia coli strain HS30-1 chromosome, complete genome	9 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	0	15	5	0
CP029493	Escherichia coli strain HS30-1 plasmid pHS30-1, complete sequence	0 crisprs	c2c9_V-U4	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029492_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_1

958658-959174

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

The CRISPR arrays of CP029492_1

>merge|CP029492|1|958658-959174|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCGGACACCATAATGATACTAAGTGTCGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCGGTAACTACGGCACAAAACAGGAGCACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATCCCAGCCTTGAAATTTTGGCTCATGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCTGACGCGGTAAAAAGCGGGGCGTGATTCGGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGTCATGGGTGCTGCTGTTGCAGAGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCAGATACACGGCTTTGTATTCCGTGCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP029492|1|1|958658-959113|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCGGACACCATAATGATACTAAGTGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGTAACTACGGCACAAAACAGGAGCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCCCAGCCTTGAAATTTTGGCTCATGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP029492|1|1|958658-959174|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCGGACACCATAATGATACTAAGTGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGTAACTACGGCACAAAACAGGAGCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCCCAGCCTTGAAATTTTGGCTCATGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP029492|1|1|958658-959174|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCGGACACCATAATGATACTAAGTGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGTAACTACGGCACAAAACAGGAGCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCCCAGCCTTGAAATTTTGGCTCATGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU89484.1\|969007_969268_-\|ferredoxin-like-protein-YgcO	unknown	unknown	gnl\|CDD\|225289
CP029492.1\|AWU89476.1\|959812_961291_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP029492.1\|AWU89473.1\|955123_956422_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP029492.1\|AWU89468.1\|949413_951648_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP029492.1\|AWU89467.1\|948064_949366_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP029492.1\|AWU89478.1\|962913_963699_+\|KR-domain-containing-protein	unknown	unknown	gnl\|CDD\|187605
CP029492.1\|AWU89481.1\|966631_967411_+\|electron-transfer-flavoprotein	unknown	unknown	gnl\|CDD\|224997
CP029492.1\|AWU89483.1\|968415_968991_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP029492.1\|AWU89471.1\|952379_953171_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP029492.1\|AWU89470.1\|951973_952309_+\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP029492.1\|AWU89475.1\|957646_958318_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP029492.1\|AWU89474.1\|957367_957508_-\|hypothetical-protein	unknown	unknown	unknown
CP029492.1\|AWU89482.1\|967407_968268_+\|electron-transfer-flavoprotein	unknown	unknown	gnl\|CDD\|224936
CP029492.1\|AWU89477.1\|961317_962595_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP029492.1\|AWU89480.1\|965316_966654_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP029492.1\|AWU89466.1\|945251_948008_-\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|236848
CP029492.1\|AWU89472.1\|953398_955036_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP029492.1\|AWU89469.1\|951725_951974_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP029492.1\|AWU89479.1\|963768_965223_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP029492.1\|AWU89485.1\|969258_970530_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU89484.1\|969007_969268_-\|ferredoxin-like-protein-YgcO	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.43419e-42
CP029492.1\|AWU89476.1\|959812_961291_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.72327e-108
CP029492.1\|AWU89473.1\|955123_956422_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP029492.1\|AWU89468.1\|949413_951648_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP029492.1\|AWU89467.1\|948064_949366_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP029492.1\|AWU89478.1\|962913_963699_+\|KR-domain-containing-protein	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.78752e-139
CP029492.1\|AWU89481.1\|966631_967411_+\|electron-transfer-flavoprotein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
CP029492.1\|AWU89483.1\|968415_968991_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP029492.1\|AWU89471.1\|952379_953171_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
CP029492.1\|AWU89470.1\|951973_952309_+\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP029492.1\|AWU89475.1\|957646_958318_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP029492.1\|AWU89477.1\|961317_962595_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.89299e-29
CP029492.1\|AWU89482.1\|967407_968268_+\|electron-transfer-flavoprotein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.27213e-89
CP029492.1\|AWU89480.1\|965316_966654_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.11848e-48
CP029492.1\|AWU89466.1\|945251_948008_-\|signal-transduction-histidine-kinase	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP029492.1\|AWU89472.1\|953398_955036_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP029492.1\|AWU89469.1\|951725_951974_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	2.43005e-47
CP029492.1\|AWU89479.1\|963768_965223_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.73778e-83
CP029492.1\|AWU89485.1\|969258_970530_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	9.16926e-127

>CP029492.1|AWU89475.1|957646_958318_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP029492.1|AWU89474.1|957367_957508_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI
>CP029492.1|AWU89473.1|955123_956422_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP029492.1|AWU89472.1|953398_955036_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP029492.1|AWU89471.1|952379_953171_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP029492.1|AWU89470.1|951973_952309_+|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP029492.1|AWU89469.1|951725_951974_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPTTLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP029492.1|AWU89468.1|949413_951648_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP029492.1|AWU89467.1|948064_949366_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDLNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP029492.1|AWU89466.1|945251_948008_-|signal-transduction-histidine-kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>CP029492.1|AWU89476.1|959812_961291_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCSAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWSVDYKSWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEINRFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>CP029492.1|AWU89477.1|961317_962595_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKIITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAVEAYRNMWLMGMAALVMVIVFTFLLFQKIRTADSAPAMASSK
>CP029492.1|AWU89478.1|962913_963699_+|KR-domain-containing-protein
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVFDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP029492.1|AWU89479.1|963768_965223_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP029492.1|AWU89480.1|965316_966654_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWFSDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVSLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP029492.1|AWU89481.1|966631_967411_+|electron-transfer-flavoprotein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>CP029492.1|AWU89482.1|967407_968268_+|electron-transfer-flavoprotein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRTLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>CP029492.1|AWU89483.1|968415_968991_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP029492.1|AWU89484.1|969007_969268_-|ferredoxin-like-protein-YgcO
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP029492.1|AWU89485.1|969258_970530_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEEEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLEPSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP029492_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_2

987002-987399

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
TGTGTTCCCCGCGCCAGCGGGGATAAACCGGGT	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP029492_2

>merge|CP029492|2|987002-987399|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGTAGAGATTCTCGAAACCGATCCGGACGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAATAATAATCCAGTAGCCCCATGTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAATAAAAAATATTCTATTTCTGCTGAATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATCTATTGTGAATTTGAAATGGTCCAGCACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCGGGC

>CP029492|2|2|987002-987396|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGTAGAGATTCTCGAAACCGATCCGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAATAATAATCCAGTAGCCCCATGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAATAAAAAATATTCTATTTCTGCTGAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATCTATTGTGAATTTGAAATGGTCCAGCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP029492|2|2|987002-987396|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGTAGAGATTCTCGAAACCGATCCGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAATAATAATCCAGTAGCCCCATGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAATAAAAAATATTCTATTTCTGCTGAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATCTATTGTGAATTTGAAATGGTCCAGCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP029492|2|2|987245-987399|PILER-CR
TGTGTTCCCCGCGCCAGCGGGGATAAACCGGGT	AAAAACACGGTCTGAACCGACATTCATG
TGTGTTCCCCGCGCCAGCGGGGATAAACCGGGT	AAAAACACGGTCTGAACCGACATTCATG
TGTGTTCCCCGCGTCAGCGGGGATAAACCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU89492.1\|978346_981046_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP029492.1\|AWU89507.1\|993315_993795_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029492.1\|AWU89497.1\|985044_985695_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP029492.1\|AWU89493.1\|981143_982706_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP029492.1\|AWU89498.1\|985691_986615_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029492.1\|AWU89506.1\|992605_993316_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029492.1\|AWU89505.1\|992275_992587_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029492.1\|AWU89491.1\|976218_977331_-\|IS4-like-element-IS421-family-transposase	unknown	unknown	gnl\|CDD\|376573
CP029492.1\|AWU89504.1\|991758_992082_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP029492.1\|AWU89494.1\|982702_983239_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP029492.1\|AWU89499.1\|986611_986905_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP029492.1\|AWU89496.1\|984316_985063_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029492.1\|AWU89495.1\|983250_984306_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP029492.1\|AWU89500.1\|987477_988515_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP029492.1\|AWU89501.1\|988766_989675_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP029492.1\|AWU89503.1\|991103_991709_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029492.1\|AWU89502.1\|989676_991104_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP029492.1\|AWU89509.1\|994821_995583_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029492.1\|AWU89508.1\|993791_994841_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP029492.1\|AWU89490.1\|975873_976026_+\|type-I-toxin-antitoxin-system-hok-family-toxin	unknown	unknown	gnl\|CDD\|366840

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU89492.1\|978346_981046_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.38567e-180
CP029492.1\|AWU89507.1\|993315_993795_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
CP029492.1\|AWU89497.1\|985044_985695_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.38075e-91
CP029492.1\|AWU89493.1\|981143_982706_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP029492.1\|AWU89498.1\|985691_986615_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.96044e-158
CP029492.1\|AWU89506.1\|992605_993316_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP029492.1\|AWU89505.1\|992275_992587_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP029492.1\|AWU89491.1\|976218_977331_-\|IS4-like-element-IS421-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.16058e-15
CP029492.1\|AWU89504.1\|991758_992082_+\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP029492.1\|AWU89494.1\|982702_983239_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
CP029492.1\|AWU89499.1\|986611_986905_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.21674e-65
CP029492.1\|AWU89496.1\|984316_985063_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.94879e-48
CP029492.1\|AWU89495.1\|983250_984306_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.80924e-154
CP029492.1\|AWU89500.1\|987477_988515_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029492.1\|AWU89501.1\|988766_989675_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029492.1\|AWU89503.1\|991103_991709_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.20197e-146
CP029492.1\|AWU89502.1\|989676_991104_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029492.1\|AWU89509.1\|994821_995583_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP029492.1\|AWU89508.1\|993791_994841_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029492.1\|AWU89490.1\|975873_976026_+\|type-I-toxin-antitoxin-system-hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	4.96653e-13

>CP029492.1|AWU89499.1|986611_986905_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMIVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP029492.1|AWU89498.1|985691_986615_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP029492.1|AWU89497.1|985044_985695_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFTPELSTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSWQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP029492.1|AWU89496.1|984316_985063_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDRFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP029492.1|AWU89495.1|983250_984306_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKVLAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTDYASFDVMNKQGSMKDVLDFICA
>CP029492.1|AWU89494.1|982702_983239_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>CP029492.1|AWU89493.1|981143_982706_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDISAPRADLQGAVWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALQSLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWINVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDEQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVDLERVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP029492.1|AWU89492.1|978346_981046_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>CP029492.1|AWU89491.1|976218_977331_-|IS4-like-element-IS421-family-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>CP029492.1|AWU89490.1|975873_976026_+|type-I-toxin-antitoxin-system-hok-family-toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP029492.1|AWU89500.1|987477_988515_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP029492.1|AWU89501.1|988766_989675_+|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP029492.1|AWU89502.1|989676_991104_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP029492.1|AWU89503.1|991103_991709_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRYFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP029492.1|AWU89504.1|991758_992082_+|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP029492.1|AWU89505.1|992275_992587_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP029492.1|AWU89506.1|992605_993316_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP029492.1|AWU89507.1|993315_993795_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP029492.1|AWU89508.1|993791_994841_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP029492.1|AWU89509.1|994821_995583_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP029492_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_3

1469842-1469959

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029492_3

>merge|CP029492|3|1469842-1469959|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>CP029492|3|3|1469842-1469959|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU92641.1\|1468614_1469745_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|181647
CP029492.1\|AWU89941.1\|1482726_1487331_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
CP029492.1\|AWU89930.1\|1464754_1466113_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
CP029492.1\|AWU89942.1\|1487331_1488981_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
CP029492.1\|AWU89928.1\|1461604_1462864_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
CP029492.1\|AWU89943.1\|1489005_1489761_+\|DUF2135-domain-containing-protein	unknown	unknown	gnl\|CDD\|227021
CP029492.1\|AWU89933.1\|1467656_1468307_+\|protein-InaA	unknown	unknown	gnl\|CDD\|182136
CP029492.1\|AWU89926.1\|1459325_1460225_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
CP029492.1\|AWU89939.1\|1480484_1482173_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
CP029492.1\|AWU89927.1\|1460417_1461608_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
CP029492.1\|AWU89938.1\|1477708_1480336_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP029492.1\|AWU89944.1\|1489834_1491019_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
CP029492.1\|AWU89929.1\|1462853_1464482_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
CP029492.1\|AWU89934.1\|1468360_1468615_-\|ferredoxin	unknown	unknown	gnl\|CDD\|182668
CP029492.1\|AWU89937.1\|1476839_1477562_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
CP029492.1\|AWU89935.1\|1469978_1472264_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
CP029492.1\|AWU89936.1\|1472959_1476712_+\|AIDA-I-family-autotransporter-YfaL	unknown	unknown	gnl\|CDD\|182059
CP029492.1\|AWU89940.1\|1482169_1482793_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
CP029492.1\|AWU89931.1\|1466117_1467194_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
CP029492.1\|AWU89932.1\|1467235_1467442_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182050

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU92641.1\|1468614_1469745_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
CP029492.1\|AWU89941.1\|1482726_1487331_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP029492.1\|AWU89930.1\|1464754_1466113_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
CP029492.1\|AWU89942.1\|1487331_1488981_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	3.10535e-127
CP029492.1\|AWU89928.1\|1461604_1462864_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
CP029492.1\|AWU89943.1\|1489005_1489761_+\|DUF2135-domain-containing-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	3.80255e-148
CP029492.1\|AWU89933.1\|1467656_1468307_+\|protein-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.86156e-158
CP029492.1\|AWU89926.1\|1459325_1460225_-\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
CP029492.1\|AWU89939.1\|1480484_1482173_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP029492.1\|AWU89927.1\|1460417_1461608_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
CP029492.1\|AWU89938.1\|1477708_1480336_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP029492.1\|AWU89944.1\|1489834_1491019_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP029492.1\|AWU89929.1\|1462853_1464482_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
CP029492.1\|AWU89934.1\|1468360_1468615_-\|ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
CP029492.1\|AWU89937.1\|1476839_1477562_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
CP029492.1\|AWU89935.1\|1469978_1472264_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
CP029492.1\|AWU89936.1\|1472959_1476712_+\|AIDA-I-family-autotransporter-YfaL	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
CP029492.1\|AWU89940.1\|1482169_1482793_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
CP029492.1\|AWU89931.1\|1466117_1467194_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
CP029492.1\|AWU89932.1\|1467235_1467442_-\|hypothetical-protein	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	1.13329e-36

>CP029492.1|AWU92641.1|1468614_1469745_-|ribonucleoside-diphosphate-reductase-1-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>CP029492.1|AWU89934.1|1468360_1468615_-|ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>CP029492.1|AWU89933.1|1467656_1468307_+|protein-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>CP029492.1|AWU89932.1|1467235_1467442_-|hypothetical-protein
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCMEQLVAIGKI
>CP029492.1|AWU89931.1|1466117_1467194_+|glycerophosphoryl-diester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>CP029492.1|AWU89930.1|1464754_1466113_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>CP029492.1|AWU89929.1|1462853_1464482_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>CP029492.1|AWU89928.1|1461604_1462864_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVHQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>CP029492.1|AWU89927.1|1460417_1461608_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>CP029492.1|AWU89926.1|1459325_1460225_-|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>CP029492.1|AWU89935.1|1469978_1472264_-|ribonucleoside-diphosphate-reductase-1-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>CP029492.1|AWU89936.1|1472959_1476712_+|AIDA-I-family-autotransporter-YfaL
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>CP029492.1|AWU89937.1|1476839_1477562_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>CP029492.1|AWU89938.1|1477708_1480336_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>CP029492.1|AWU89939.1|1480484_1482173_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>CP029492.1|AWU89940.1|1482169_1482793_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>CP029492.1|AWU89941.1|1482726_1487331_+|alpha-2-macroglobulin-family-protein
MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILVKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVRVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGENALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINPGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKDEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>CP029492.1|AWU89942.1|1487331_1488981_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLIIPDSSATQRVSASPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>CP029492.1|AWU89943.1|1489005_1489761_+|DUF2135-domain-containing-protein
MLLVALSPVAHSEGVQEVEIDAPLSGWHPVEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>CP029492.1|AWU89944.1|1489834_1491019_-|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKADSTTEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLTRIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: CP029492_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_4

2061680-2061803

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029492_4

>merge|CP029492|4|2061680-2061803|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP029492|4|4|2061680-2061803|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU90466.1\|2061239_2061545_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP029492.1\|AWU90462.1\|2056520_2057168_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182160
CP029492.1\|AWU90473.1\|2069375_2070401_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP029492.1\|AWU90470.1\|2065683_2066832_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP029492.1\|AWU90467.1\|2062117_2063374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
CP029492.1\|AWU90475.1\|2070699_2070789_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP029492.1\|AWU90461.1\|2052695_2053322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182135
CP029492.1\|AWU92665.1\|2054491_2055466_+\|IS30-like-element-ISApl1-family-transposase	unknown	unknown	gnl\|CDD\|225382
CP029492.1\|AWU90468.1\|2063414_2064788_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP029492.1\|AWU90469.1\|2065002_2065644_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP029492.1\|AWU90472.1\|2068446_2069379_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP029492.1\|AWU90474.1\|2070388_2070613_-\|hypothetical-protein	unknown	unknown	unknown
CP029492.1\|AWU90463.1\|2057896_2058682_+\|protein-PhsC	unknown	unknown	gnl\|CDD\|184968
CP029492.1\|AWU90460.1\|2052031_2052241_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP029492.1\|AWU92666.1\|2057231_2057900_+\|thiosulfate-reductase-electron-transport-protein-PhsB	unknown	unknown	gnl\|CDD\|274451
CP029492.1\|AWU90476.1\|2070954_2072124_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP029492.1\|AWU90471.1\|2067122_2068334_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
CP029492.1\|AWU90464.1\|2058685_2059498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP029492.1\|AWU90465.1\|2059509_2061114_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
CP029492.1\|AWU90459.1\|2050062_2051475_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU90466.1\|2061239_2061545_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	4.48611e-64
CP029492.1\|AWU90462.1\|2056520_2057168_+\|hypothetical-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	3.717e-122
CP029492.1\|AWU90473.1\|2069375_2070401_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP029492.1\|AWU90470.1\|2065683_2066832_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP029492.1\|AWU90467.1\|2062117_2063374_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP029492.1\|AWU90461.1\|2052695_2053322_+\|hypothetical-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
CP029492.1\|AWU92665.1\|2054491_2055466_+\|IS30-like-element-ISApl1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.48395e-86
CP029492.1\|AWU90468.1\|2063414_2064788_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP029492.1\|AWU90469.1\|2065002_2065644_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
CP029492.1\|AWU90472.1\|2068446_2069379_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP029492.1\|AWU90463.1\|2057896_2058682_+\|protein-PhsC	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.40835e-163
CP029492.1\|AWU90460.1\|2052031_2052241_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP029492.1\|AWU92666.1\|2057231_2057900_+\|thiosulfate-reductase-electron-transport-protein-PhsB	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
CP029492.1\|AWU90476.1\|2070954_2072124_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
CP029492.1\|AWU90471.1\|2067122_2068334_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP029492.1\|AWU90464.1\|2058685_2059498_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	7.33089e-174
CP029492.1\|AWU90465.1\|2059509_2061114_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP029492.1\|AWU90459.1\|2050062_2051475_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0

>CP029492.1|AWU90466.1|2061239_2061545_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP029492.1|AWU90465.1|2059509_2061114_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFHGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPSSRARRRLSFD
>CP029492.1|AWU90464.1|2058685_2059498_+|hypothetical-protein
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALVYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP029492.1|AWU90463.1|2057896_2058682_+|protein-PhsC
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP029492.1|AWU92666.1|2057231_2057900_+|thiosulfate-reductase-electron-transport-protein-PhsB
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP029492.1|AWU90462.1|2056520_2057168_+|hypothetical-protein
MGKMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP029492.1|AWU92665.1|2054491_2055466_+|IS30-like-element-ISApl1-family-transposase
MMSTSYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHALESYSATNAQNSYLKHRQNSKAQRKLEQPEYFNLVQEKFLTENWSPEQISARLKLEKSELSISYSTIYRGIYSGLFDIGERKASRKLRHKGKTRHTKNHHEKRGKIQISNHLNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAMIELLDSHILRSITPDRGKEFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLLREYFPKHQDINQWSEVDIQQVINKLNLRPRKCLGWKTPYEVYFKKSLHLV
>CP029492.1|AWU90461.1|2052695_2053322_+|hypothetical-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP029492.1|AWU90460.1|2052031_2052241_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP029492.1|AWU90459.1|2050062_2051475_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP029492.1|AWU90467.1|2062117_2063374_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP029492.1|AWU90468.1|2063414_2064788_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRMPSAIILQRASR
>CP029492.1|AWU90469.1|2065002_2065644_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP029492.1|AWU90470.1|2065683_2066832_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP029492.1|AWU90471.1|2067122_2068334_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>CP029492.1|AWU90472.1|2068446_2069379_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP029492.1|AWU90473.1|2069375_2070401_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP029492.1|AWU90474.1|2070388_2070613_-|hypothetical-protein
MISVFTTSPFRQDRPKFHAYTICVLAIDPFLTLRVVFPAYRNTFVVRKVCKGKRLPCDFAGAEVRVWSEMEWQQ
>CP029492.1|AWU90475.1|2070699_2070789_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP029492.1|AWU90476.1|2070954_2072124_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS

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Crispr_ID: CP029492_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_6

2826965-2827170

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAACG	PILER-CR

3 spacers

The CRISPR arrays of CP029492_6

>merge|CP029492|6|2826965-2827170|CRISPRCasFinder,CRT,PILER-CR
CATTTTATCTGTCTGTACGGCAGTGAACATGGTGGGTGGAGTATGTTACCTGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCCAACTTTCACAGCCTTTGCAAGATTGTTCCTTTCTAAGCTGCCTGTACGGCAGTGAACGTTCGCTGCAACCGCTAGCCAAGACGGTAGGTTTTTCTAAGCTGCCTGTACGGCAGTGAACT

>CP029492|6|6|2826965-2827169|CRISPRCasFinder
CATTTTATCTGTCTGTACGGCAGTGAAC	ATGGTGGGTGGAGTATGTTACCTGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP029492|6|3|2826965-2827169|CRT
CATTTTATCTGTCTGTACGGCAGTGAAC	ATGGTGGGTGGAGTATGTTACCTGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP029492|6|3|2827021-2827170|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAACG	CCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAACG	TTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU91149.1\|2830627_2832574_-\|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB	unknown	unknown	gnl\|CDD\|182528
CP029492.1\|AWU91145.1\|2826361_2826580_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP029492.1\|AWU91146.1\|2827380_2829657_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP029492.1\|AWU91140.1\|2819715_2820210_-\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP029492.1\|AWU91142.1\|2821842_2823609_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|236870
CP029492.1\|AWU91150.1\|2832570_2833686_-\|MacA-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|183211
CP029492.1\|AWU91137.1\|2813471_2814815_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP029492.1\|AWU91139.1\|2815591_2819581_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP029492.1\|AWU91144.1\|2825372_2826077_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP029492.1\|AWU91154.1\|2838062_2838962_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
CP029492.1\|AWU91153.1\|2836872_2837568_+\|aquaporin	unknown	unknown	gnl\|CDD\|235453
CP029492.1\|AWU91136.1\|2812088_2813381_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP029492.1\|AWU91143.1\|2823609_2825331_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP029492.1\|AWU91138.1\|2814825_2815437_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP029492.1\|AWU91147.1\|2829687_2830008_-\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|178809
CP029492.1\|AWU91151.1\|2833800_2834793_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
CP029492.1\|AWU91152.1\|2834789_2836448_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
CP029492.1\|AWU91155.1\|2839105_2840758_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP029492.1\|AWU91148.1\|2830330_2830555_+\|cold-shock-protein-CspD	unknown	unknown	gnl\|CDD\|77494
CP029492.1\|AWU91141.1\|2820754_2821720_+\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|182343

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU91149.1\|2830627_2832574_-\|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP029492.1\|AWU91145.1\|2826361_2826580_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
CP029492.1\|AWU91146.1\|2827380_2829657_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP029492.1\|AWU91140.1\|2819715_2820210_-\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
CP029492.1\|AWU91142.1\|2821842_2823609_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP029492.1\|AWU91150.1\|2832570_2833686_-\|MacA-family-efflux-pump-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP029492.1\|AWU91137.1\|2813471_2814815_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP029492.1\|AWU91139.1\|2815591_2819581_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP029492.1\|AWU91144.1\|2825372_2826077_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
CP029492.1\|AWU91154.1\|2838062_2838962_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	4.37433e-118
CP029492.1\|AWU91153.1\|2836872_2837568_+\|aquaporin	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
CP029492.1\|AWU91136.1\|2812088_2813381_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP029492.1\|AWU91143.1\|2823609_2825331_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP029492.1\|AWU91138.1\|2814825_2815437_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
CP029492.1\|AWU91147.1\|2829687_2830008_-\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
CP029492.1\|AWU91151.1\|2833800_2834793_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	8.48293e-133
CP029492.1\|AWU91152.1\|2834789_2836448_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP029492.1\|AWU91155.1\|2839105_2840758_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP029492.1\|AWU91148.1\|2830330_2830555_+\|cold-shock-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
CP029492.1\|AWU91141.1\|2820754_2821720_+\|thioredoxin-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0

>CP029492.1|AWU91145.1|2826361_2826580_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP029492.1|AWU91144.1|2825372_2826077_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>CP029492.1|AWU91143.1|2823609_2825331_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLHVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFIFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTHVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>CP029492.1|AWU91142.1|2821842_2823609_+|thiol-reductant-ABC-exporter-subunit-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELALTDPLTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>CP029492.1|AWU91141.1|2820754_2821720_+|thioredoxin-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>CP029492.1|AWU91140.1|2819715_2820210_-|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP029492.1|AWU91139.1|2815591_2819581_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEAYRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP029492.1|AWU91138.1|2814825_2815437_-|outer-membrane-lipoprotein-carrier-protein-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>CP029492.1|AWU91137.1|2813471_2814815_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>CP029492.1|AWU91136.1|2812088_2813381_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>CP029492.1|AWU91146.1|2827380_2829657_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKAKNELTYGFQSAQKHKAEAAH
>CP029492.1|AWU91147.1|2829687_2830008_-|ATP-dependent-Clp-protease-adaptor-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP029492.1|AWU91148.1|2830330_2830555_+|cold-shock-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>CP029492.1|AWU91149.1|2830627_2832574_-|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>CP029492.1|AWU91150.1|2832570_2833686_-|MacA-family-efflux-pump-subunit
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>CP029492.1|AWU91151.1|2833800_2834793_+|DUF535-domain-containing-protein
MVKSTSCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>CP029492.1|AWU91152.1|2834789_2836448_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVHNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>CP029492.1|AWU91153.1|2836872_2837568_+|aquaporin
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>CP029492.1|AWU91154.1|2838062_2838962_+|lysine-exporter-LysO-family-protein
MFSGLLIILVPLIVGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>CP029492.1|AWU91155.1|2839105_2840758_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: CP029492_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_7

2994709-2994853

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029492_7

>merge|CP029492|7|2994709-2994853|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP029492|7|7|2994709-2994853|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU91320.1\|2994876_2997138_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
CP029492.1\|AWU91317.1\|2991958_2992177_+\|excisionase	unknown	unknown	gnl\|CDD\|116439
CP029492.1\|AWU91324.1\|3001059_3002055_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
CP029492.1\|AWU91311.1\|2988782_2989385_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP029492.1\|AWU91327.1\|3004089_3004779_-\|molybdenum-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
CP029492.1\|AWU91322.1\|2998829_2999882_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
CP029492.1\|AWU91328.1\|3004778_3005552_-\|molybdate-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|182641
CP029492.1\|AWU91323.1\|3000065_3001019_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
CP029492.1\|AWU91313.1\|2990329_2990551_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|222775
CP029492.1\|AWU91314.1\|2990547_2990919_+\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401
CP029492.1\|AWU91315.1\|2990915_2991569_+\|DUF550-domain-containing-protein	unknown	unknown	gnl\|CDD\|367945
CP029492.1\|AWU91321.1\|2997320_2998754_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
CP029492.1\|AWU91310.1\|2987526_2988771_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|238846
CP029492.1\|AWU91316.1\|2991665_2991845_+\|Eag-protein	unknown	unknown	gnl\|CDD\|106959
CP029492.1\|AWU91312.1\|2989381_2989960_-\|hypothetical-protein	unknown	unknown	unknown
CP029492.1\|AWU91318.1\|2992154_2993225_+\|integrase	unknown	unknown	gnl\|CDD\|271181
CP029492.1\|AWU91319.1\|2993359_2994643_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236709
CP029492.1\|AWU91329.1\|3005573_3005783_-\|hypothetical-protein	unknown	unknown	unknown
CP029492.1\|AWU91325.1\|3002209_3003028_+\|pyridoxal-phosphate-phosphatase-YbhA	unknown	unknown	gnl\|CDD\|182523
CP029492.1\|AWU91326.1\|3003028_3004087_-\|molybdenum-import-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU91320.1\|2994876_2997138_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
CP029492.1\|AWU91317.1\|2991958_2992177_+\|excisionase	gnl\|CDD\|116439	pfam07825, Exc, Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.	8.49552e-35
CP029492.1\|AWU91324.1\|3001059_3002055_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
CP029492.1\|AWU91311.1\|2988782_2989385_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.49494e-11
CP029492.1\|AWU91327.1\|3004089_3004779_-\|molybdenum-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
CP029492.1\|AWU91322.1\|2998829_2999882_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
CP029492.1\|AWU91328.1\|3004778_3005552_-\|molybdate-binding-periplasmic-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
CP029492.1\|AWU91323.1\|3000065_3001019_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
CP029492.1\|AWU91313.1\|2990329_2990551_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	1.57279e-26
CP029492.1\|AWU91314.1\|2990547_2990919_+\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	6.37004e-16
CP029492.1\|AWU91315.1\|2990915_2991569_+\|DUF550-domain-containing-protein	gnl\|CDD\|367945	pfam04447, DUF550, Protein of unknown function (DUF550). This family is found in a range of Proteobacteria and a few P-22 dsDNA virus particles. The function is currently not known.	1.66922e-44
CP029492.1\|AWU91321.1\|2997320_2998754_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
CP029492.1\|AWU91310.1\|2987526_2988771_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|238846	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase activity (sulphate adenylate transferase) .	3.71794e-14
CP029492.1\|AWU91316.1\|2991665_2991845_+\|Eag-protein	gnl\|CDD\|106959	PHA00626, PHA00626, hypothetical protein.	3.02558e-26
CP029492.1\|AWU91318.1\|2992154_2993225_+\|integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	3.41419e-62
CP029492.1\|AWU91319.1\|2993359_2994643_+\|acyl-CoA-thioesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
CP029492.1\|AWU91325.1\|3002209_3003028_+\|pyridoxal-phosphate-phosphatase-YbhA	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
CP029492.1\|AWU91326.1\|3003028_3004087_-\|molybdenum-import-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0

>CP029492.1|AWU91319.1|2993359_2994643_+|acyl-CoA-thioesterase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>CP029492.1|AWU91318.1|2992154_2993225_+|integrase
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
>CP029492.1|AWU91317.1|2991958_2992177_+|excisionase
MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRPVTGSLLKRIRNGKKAKS
>CP029492.1|AWU91316.1|2991665_2991845_+|Eag-protein
MSCPKCGSGNIAKEKTMRGWSGDYVCCDCGYNDSKDAFGERGKNKFVKINKEREGNEKS
>CP029492.1|AWU91315.1|2990915_2991569_+|DUF550-domain-containing-protein
MSTFTKEWLQNTITSIESARDEMPFGLDNDQAHMLTAFKIALASLEREQIRHEHAKWSDSTFGCVGPIGPLKHLSKEALEAAAEPDDLSEWADMQFLLWDAQRRAGISDAEITAAMENKLKINMERQWPEPKDGEPRLHIKERGNSPVTPGGWISCSDRMPEDTKMLLAFSQGEIVAAYWNWVVNPIDYKKYRAFTYLSGNILDDVTHWMPLPEPPL
>CP029492.1|AWU91314.1|2990547_2990919_+|ead/Ea22-like-family-protein
MSEINSQALREAAEQAMHDDWGFDADLFHELVTPSIVLELLDERERNQQYIKRRDQENEDIALTVGKLRVELEGKDRRITEVTMWIKRLSFSLKNAKPDSKLPDDAMIWLNNEGLTSIEDILR
>CP029492.1|AWU91313.1|2990329_2990551_+|TraR/DksA-family-transcriptional-regulator
MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQEDLELISKQRGSK
>CP029492.1|AWU91312.1|2989381_2989960_-|hypothetical-protein
MVNQQQQQINENLKIEAIRWYQKLQEITYLEAGQHMRALNQLMWQIPSFVIAVNGGLWYATTLANESSLWIIFAVLALFDFTTMITLYRLRSLIGSKIALQKNIEDPSKNYILNEITRDAGFKLPSSYDNKETGYIVVSCWAIMLIVCFFVNIAGVYHPNLFSKDISHNTYKATIKNIESGLFIEAKSGLSK
>CP029492.1|AWU91311.1|2988782_2989385_-|class-I-SAM-dependent-methyltransferase
MTSWKFYDNNADRLFADYISLDFYSIFQDVEEFILQSKGVSLDVGSGSGRDAAALDELGYKVIAVEPSEKMRNLASSYYKSNHIIWLDDSLPFLHSVKAMNLKFDLILVSAVWMHLSKKEQKISLETLTDLLTLNGRMIITLRLGPPEPDRNINVVNTEELLELASQLGLKTLRVTSINKDSFQRNQITWQKVVLSKNNE
>CP029492.1|AWU91310.1|2987526_2988771_+|phosphoadenosine-phosphosulfate-reductase
MNEAAIIIVPTDISKKIREIEESYNRYINEFRIPNDHKIIVNYSAGKDSTATLAVAHTLFGKQVHAVMADTDNEHNLTVEFARSIHEQIGCSPVQVVKRIYTEEDFAKRRIYLQKNWSKRQMIRMGAYRGIVMPSLARSDTKFGQAWKRTAERWGIEFETALDAALSVMHPSGNSFLDCSLLHGKFPMLRDRFCTDELKIQIAFDAAIKPLLDAGDVIVQWSGVRADESSKRAGYERFSRDMRDADFLYNFLPLHKWTAEDVFAVHKYFGIKPNPLYMQGASRVGCMNCVLCNKEEIAETAARWPEHIKKHKQWELKVRLASRWVHWMSVGEISQRWMKQFNLPLGRNIQLFGLKPDVQHIDWSGFYGPRGDLNSPGVYEVVEWAKTGRGGKVYDLVKASLDIEVCSSRYGLCE
>CP029492.1|AWU91320.1|2994876_2997138_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVAALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>CP029492.1|AWU91321.1|2997320_2998754_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>CP029492.1|AWU91322.1|2998829_2999882_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>CP029492.1|AWU91323.1|3000065_3001019_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>CP029492.1|AWU91324.1|3001059_3002055_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>CP029492.1|AWU91325.1|3002209_3003028_+|pyridoxal-phosphate-phosphatase-YbhA
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>CP029492.1|AWU91326.1|3003028_3004087_-|molybdenum-import-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>CP029492.1|AWU91327.1|3004089_3004779_-|molybdenum-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>CP029492.1|AWU91328.1|3004778_3005552_-|molybdate-binding-periplasmic-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>CP029492.1|AWU91329.1|3005573_3005783_-|hypothetical-protein
MVKYSTSFLVLVKKTSPDKIIDSLNARLVGHFLFLNFLLFLPIFFLIYLTKVSNNCWENSELVVILSPT

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Crispr_ID: CP029492_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_8

3223455-3223551

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029492_8

>merge|CP029492|8|3223455-3223551|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>CP029492|8|8|3223455-3223551|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU91519.1\|3220976_3221699_+\|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl\|CDD\|235420
CP029492.1\|AWU91529.1\|3230808_3232110_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
CP029492.1\|AWU91523.1\|3224474_3225290_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
CP029492.1\|AWU92723.1\|3214827_3214947_-\|mannose-binding-protein	unknown	unknown	gnl\|CDD\|237921
CP029492.1\|AWU91527.1\|3228628_3229414_+\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
CP029492.1\|AWU91515.1\|3218043_3218256_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183166
CP029492.1\|AWU91524.1\|3225300_3226560_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
CP029492.1\|AWU91518.1\|3220479_3220974_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
CP029492.1\|AWU91517.1\|3218920_3220306_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP029492.1\|AWU91513.1\|3212667_3213183_-\|fimbriae-assembly-protein	unknown	unknown	gnl\|CDD\|182153
CP029492.1\|AWU91526.1\|3228348_3228618_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|274471
CP029492.1\|AWU91531.1\|3235980_3236859_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|185019
CP029492.1\|AWU91516.1\|3218363_3218885_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
CP029492.1\|AWU91522.1\|3223584_3224478_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
CP029492.1\|AWU91520.1\|3221816_3222326_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
CP029492.1\|AWU91530.1\|3233580_3235035_-\|putative-allantoin-permease	unknown	unknown	gnl\|CDD\|183106
CP029492.1\|AWU91514.1\|3217175_3218042_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|236760
CP029492.1\|AWU91521.1\|3222322_3223390_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
CP029492.1\|AWU91528.1\|3229641_3230787_-\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
CP029492.1\|AWU91525.1\|3226569_3228237_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU91519.1\|3220976_3221699_+\|UDP-2,3-diacylglucosamine-hydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.25513e-165
CP029492.1\|AWU91529.1\|3230808_3232110_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
CP029492.1\|AWU91523.1\|3224474_3225290_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.28312e-37
CP029492.1\|AWU92723.1\|3214827_3214947_-\|mannose-binding-protein	gnl\|CDD\|237921	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH.	1.66451e-20
CP029492.1\|AWU91527.1\|3228628_3229414_+\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	1.52271e-150
CP029492.1\|AWU91515.1\|3218043_3218256_+\|hypothetical-protein	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
CP029492.1\|AWU91524.1\|3225300_3226560_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.8369e-131
CP029492.1\|AWU91518.1\|3220479_3220974_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
CP029492.1\|AWU91517.1\|3218920_3220306_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP029492.1\|AWU91513.1\|3212667_3213183_-\|fimbriae-assembly-protein	gnl\|CDD\|182153	PRK09934, PRK09934, fimbriae assembly protein.	2.40872e-108
CP029492.1\|AWU91526.1\|3228348_3228618_+\|allantoate-amidohydrolase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	5.18479e-59
CP029492.1\|AWU91531.1\|3235980_3236859_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|185019	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase.	0
CP029492.1\|AWU91516.1\|3218363_3218885_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.17059e-30
CP029492.1\|AWU91522.1\|3223584_3224478_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
CP029492.1\|AWU91520.1\|3221816_3222326_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	2.09217e-91
CP029492.1\|AWU91530.1\|3233580_3235035_-\|putative-allantoin-permease	gnl\|CDD\|183106	PRK11375, PRK11375, putative allantoin permease.	0
CP029492.1\|AWU91514.1\|3217175_3218042_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
CP029492.1\|AWU91521.1\|3222322_3223390_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	5.70382e-179
CP029492.1\|AWU91528.1\|3229641_3230787_-\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
CP029492.1\|AWU91525.1\|3226569_3228237_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0

>CP029492.1|AWU91521.1|3222322_3223390_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>CP029492.1|AWU91520.1|3221816_3222326_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRNAQTDEVLENPDPRGAA
>CP029492.1|AWU91519.1|3220976_3221699_+|UDP-2,3-diacylglucosamine-hydrolase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>CP029492.1|AWU91518.1|3220479_3220974_+|peptidyl-prolyl-cis-trans-isomerase
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>CP029492.1|AWU91517.1|3218920_3220306_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>CP029492.1|AWU91516.1|3218363_3218885_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFNFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTAYGHQVIISELMWVWLPGMLLMGMLWWRRR
>CP029492.1|AWU91515.1|3218043_3218256_+|hypothetical-protein
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>CP029492.1|AWU91514.1|3217175_3218042_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>CP029492.1|AWU92723.1|3214827_3214947_-|mannose-binding-protein
MACLCLANISWATVCANSTGVAEDEHYDLSNIFNSTNNR
>CP029492.1|AWU91513.1|3212667_3213183_-|fimbriae-assembly-protein
MRRVLFSCFCGLLWSSIGWAADPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQLLNAGDTTALVPFSLRLEGCPPGSVAILFTGTPASDTNLLALDDPAMAQTVAIELRNSDRSRLALGEASPTEEVDANGNVTLNFFANYRALASGVRPGVAKADAIFMINYN
>CP029492.1|AWU91522.1|3223584_3224478_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>CP029492.1|AWU91523.1|3224474_3225290_-|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWMLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>CP029492.1|AWU91524.1|3225300_3226560_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>CP029492.1|AWU91525.1|3226569_3228237_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLRVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHVIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>CP029492.1|AWU91526.1|3228348_3228618_+|allantoate-amidohydrolase
MDEEPVPMNKDLVATLTELCESEKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>CP029492.1|AWU91527.1|3228628_3229414_+|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYRDDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAHAEDSQIFLYKRRYVPIEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEVFSYIYSKDCNRDVEI
>CP029492.1|AWU91528.1|3229641_3230787_-|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>CP029492.1|AWU91529.1|3230808_3232110_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>CP029492.1|AWU91530.1|3233580_3235035_-|putative-allantoin-permease
MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENGGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVSWFVGVIVAFAAYALLKKRTTAEKTGEQKTIG
>CP029492.1|AWU91531.1|3235980_3236859_-|2-hydroxy-3-oxopropionate-reductase
MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMNSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKLA

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Crispr_ID: CP029492_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_9

3365146-3365290

Orphan

Consensus_repeat	Method
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029492_9

>merge|CP029492|9|3365146-3365290|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>CP029492|9|9|3365146-3365290|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU91641.1\|3356136_3357111_-\|IS30-like-element-ISApl1-family-transposase	unknown	unknown	gnl\|CDD\|225382
CP029492.1\|AWU91648.1\|3368260_3368938_-\|protein-AroM	unknown	unknown	gnl\|CDD\|182491
CP029492.1\|AWU92728.1\|3366346_3367258_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
CP029492.1\|AWU91652.1\|3370143_3370602_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
CP029492.1\|AWU91649.1\|3368967_3369165_-\|hypothetical-protein	unknown	unknown	unknown
CP029492.1\|AWU91636.1\|3349212_3350283_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
CP029492.1\|AWU91639.1\|3352934_3354308_-\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
CP029492.1\|AWU91647.1\|3367904_3368189_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
CP029492.1\|AWU91653.1\|3370721_3371531_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
CP029492.1\|AWU92727.1\|3363884_3365069_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|182234
CP029492.1\|AWU91644.1\|3360612_3363759_+\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330
CP029492.1\|AWU91651.1\|3369436_3369961_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|235153
CP029492.1\|AWU91637.1\|3350375_3350957_+\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
CP029492.1\|AWU91643.1\|3359413_3360616_+\|exonuclease-sbcCD-subunit-D	unknown	unknown	gnl\|CDD\|182871
CP029492.1\|AWU91642.1\|3358534_3359224_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|182277
CP029492.1\|AWU91650.1\|3369195_3369387_-\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
CP029492.1\|AWU91638.1\|3350961_3352776_-\|alpha-glycosidase	unknown	unknown	gnl\|CDD\|236759
CP029492.1\|AWU91645.1\|3365313_3366222_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565
CP029492.1\|AWU91646.1\|3367415_3367697_-\|DUF2773-domain-containing-protein	unknown	unknown	gnl\|CDD\|287885
CP029492.1\|AWU91640.1\|3354383_3355703_-\|branched-chain-amino-acid-transport-system-2-carrier-protein	unknown	unknown	gnl\|CDD\|185331

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU91641.1\|3356136_3357111_-\|IS30-like-element-ISApl1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.48395e-86
CP029492.1\|AWU91648.1\|3368260_3368938_-\|protein-AroM	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
CP029492.1\|AWU92728.1\|3366346_3367258_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	0
CP029492.1\|AWU91652.1\|3370143_3370602_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	4.47188e-80
CP029492.1\|AWU91636.1\|3349212_3350283_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
CP029492.1\|AWU91639.1\|3352934_3354308_-\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
CP029492.1\|AWU91647.1\|3367904_3368189_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
CP029492.1\|AWU91653.1\|3370721_3371531_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.50319e-129
CP029492.1\|AWU92727.1\|3363884_3365069_+\|MFS-transporter	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
CP029492.1\|AWU91644.1\|3360612_3363759_+\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
CP029492.1\|AWU91651.1\|3369436_3369961_-\|shikimate-kinase	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
CP029492.1\|AWU91637.1\|3350375_3350957_+\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
CP029492.1\|AWU91643.1\|3359413_3360616_+\|exonuclease-sbcCD-subunit-D	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
CP029492.1\|AWU91642.1\|3358534_3359224_-\|DNA-binding-response-regulator	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
CP029492.1\|AWU91650.1\|3369195_3369387_-\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
CP029492.1\|AWU91638.1\|3350961_3352776_-\|alpha-glycosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
CP029492.1\|AWU91645.1\|3365313_3366222_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
CP029492.1\|AWU91646.1\|3367415_3367697_-\|DUF2773-domain-containing-protein	gnl\|CDD\|287885	pfam10971, DUF2773, Protein of unknown function (DUF2773). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.	1.10173e-36
CP029492.1\|AWU91640.1\|3354383_3355703_-\|branched-chain-amino-acid-transport-system-2-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0

>CP029492.1|AWU92727.1|3363884_3365069_+|MFS-transporter
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>CP029492.1|AWU91644.1|3360612_3363759_+|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQHQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>CP029492.1|AWU91643.1|3359413_3360616_+|exonuclease-sbcCD-subunit-D
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>CP029492.1|AWU91642.1|3358534_3359224_-|DNA-binding-response-regulator
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>CP029492.1|AWU91641.1|3356136_3357111_-|IS30-like-element-ISApl1-family-transposase
MMSTSYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHALESYSATNAQNSYLKHRQNSKAQRKLEQPEYFNLVQEKFLTENWSPEQISARLKLEKSELSISYSTIYRGIYSGLFDIGERKASRKLRHKGKTRHTKNHHEKRGKIQISNHLNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAMIELLDSHILRSITPDRGKEFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLLREYFPKHQDINQWSEVDIQQVINKLNLRPRKCLGWKTPYEVYFKKSLHLV
>CP029492.1|AWU91640.1|3354383_3355703_-|branched-chain-amino-acid-transport-system-2-carrier-protein
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>CP029492.1|AWU91639.1|3352934_3354308_-|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>CP029492.1|AWU91638.1|3350961_3352776_-|alpha-glycosidase
MLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>CP029492.1|AWU91637.1|3350375_3350957_+|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>CP029492.1|AWU91636.1|3349212_3350283_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>CP029492.1|AWU91645.1|3365313_3366222_-|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>CP029492.1|AWU92728.1|3366346_3367258_+|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFIPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPHAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>CP029492.1|AWU91646.1|3367415_3367697_-|DUF2773-domain-containing-protein
MLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEARHRLEEKQ
>CP029492.1|AWU91647.1|3367904_3368189_-|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>CP029492.1|AWU91648.1|3368260_3368938_-|protein-AroM
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>CP029492.1|AWU91649.1|3368967_3369165_-|hypothetical-protein
MPLQGICVTFFIIHVFLIIRILNNNNPLLESFGIFTLCRARLLLRFLSFVAQVSVSSGASHLPGN
>CP029492.1|AWU91650.1|3369195_3369387_-|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>CP029492.1|AWU91651.1|3369436_3369961_-|shikimate-kinase
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>CP029492.1|AWU91652.1|3370143_3370602_-|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAAINPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>CP029492.1|AWU91653.1|3370721_3371531_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAESMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS

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Crispr_ID: CP029492_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029492_10

3703780-3703921

Orphan

Consensus_repeat	Method
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029492_10

>merge|CP029492|10|3703780-3703921|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATAGCTGTCGGATGCGGCATAAACGCCTTATCCAACCCGGCTGGAGAGCAACCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA

>CP029492|10|10|3703780-3703921|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	TAGCTGTCGGATGCGGCATAAACGCCTTATCCAACCCG
GCTGGAGAGCAACCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029492.1\|AWU91969.1\|3712944_3713439_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
CP029492.1\|AWU91957.1\|3699407_3700625_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
CP029492.1\|AWU91966.1\|3710438_3711353_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713
CP029492.1\|AWU91956.1\|3698136_3699279_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
CP029492.1\|AWU91953.1\|3694392_3695334_-\|protein-FixB	unknown	unknown	gnl\|CDD\|235120
CP029492.1\|AWU91968.1\|3712370_3712820_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|237908
CP029492.1\|AWU91961.1\|3703950_3704346_-\|transcriptional-activatory-protein-CaiF	unknown	unknown	gnl\|CDD\|183154
CP029492.1\|AWU91963.1\|3704607_3707829_-\|carbamoyl-phosphate-synthase-large-chain	unknown	unknown	gnl\|CDD\|235393
CP029492.1\|AWU91964.1\|3707846_3708995_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP029492.1\|AWU91970.1\|3713438_3716255_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
CP029492.1\|AWU91960.1\|3703151_3703742_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
CP029492.1\|AWU91952.1\|3693055_3694342_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
CP029492.1\|AWU91955.1\|3696591_3698106_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
CP029492.1\|AWU91958.1\|3700698_3702252_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
CP029492.1\|AWU91965.1\|3709450_3710272_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
CP029492.1\|AWU91951.1\|3692771_3693059_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
CP029492.1\|AWU91954.1\|3695348_3696119_-\|protein-FixA	unknown	unknown	gnl\|CDD\|179569
CP029492.1\|AWU91962.1\|3704380_3704560_+\|hypothetical-protein	unknown	unknown	unknown
CP029492.1\|AWU91959.1\|3702360_3703146_+\|carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|179599
CP029492.1\|AWU91967.1\|3711418_3712369_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893

Protein	Function_ID	Function_description	E-value
CP029492.1\|AWU91969.1\|3712944_3713439_-\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	8.43095e-76
CP029492.1\|AWU91957.1\|3699407_3700625_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
CP029492.1\|AWU91966.1\|3710438_3711353_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0
CP029492.1\|AWU91956.1\|3698136_3699279_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
CP029492.1\|AWU91953.1\|3694392_3695334_-\|protein-FixB	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
CP029492.1\|AWU91968.1\|3712370_3712820_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|237908	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	9.11961e-106
CP029492.1\|AWU91961.1\|3703950_3704346_-\|transcriptional-activatory-protein-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
CP029492.1\|AWU91963.1\|3704607_3707829_-\|carbamoyl-phosphate-synthase-large-chain	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP029492.1\|AWU91964.1\|3707846_3708995_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP029492.1\|AWU91970.1\|3713438_3716255_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
CP029492.1\|AWU91960.1\|3703151_3703742_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	6.23334e-142
CP029492.1\|AWU91952.1\|3693055_3694342_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
CP029492.1\|AWU91955.1\|3696591_3698106_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
CP029492.1\|AWU91958.1\|3700698_3702252_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
CP029492.1\|AWU91965.1\|3709450_3710272_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	2.21003e-141
CP029492.1\|AWU91951.1\|3692771_3693059_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
CP029492.1\|AWU91954.1\|3695348_3696119_-\|protein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
CP029492.1\|AWU91959.1\|3702360_3703146_+\|carnitinyl-CoA-dehydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	5.82869e-179
CP029492.1\|AWU91967.1\|3711418_3712369_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0

>CP029492.1|AWU91960.1|3703151_3703742_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRYHASLHETQPLRQMEENRPRLQGTTDVTPKR
>CP029492.1|AWU91959.1|3702360_3703146_+|carnitinyl-CoA-dehydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>CP029492.1|AWU91958.1|3700698_3702252_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNCPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>CP029492.1|AWU91957.1|3699407_3700625_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>CP029492.1|AWU91956.1|3698136_3699279_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>CP029492.1|AWU91955.1|3696591_3698106_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>CP029492.1|AWU91954.1|3695348_3696119_-|protein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>CP029492.1|AWU91953.1|3694392_3695334_-|protein-FixB
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>CP029492.1|AWU91952.1|3693055_3694342_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>CP029492.1|AWU91951.1|3692771_3693059_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>CP029492.1|AWU91961.1|3703950_3704346_-|transcriptional-activatory-protein-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>CP029492.1|AWU91962.1|3704380_3704560_+|hypothetical-protein
MTRFEAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKTVLIREPY
>CP029492.1|AWU91963.1|3704607_3707829_-|carbamoyl-phosphate-synthase-large-chain
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>CP029492.1|AWU91964.1|3707846_3708995_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEAILPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>CP029492.1|AWU91965.1|3709450_3710272_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL
>CP029492.1|AWU91966.1|3710438_3711353_-|ribonucleoside-hydrolase-RihC
MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGKSGMAGYDFVEHNRKPLEVPAFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPHIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLNVKGFQQWVADLLALVP
>CP029492.1|AWU91967.1|3711418_3712369_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD
>CP029492.1|AWU91968.1|3712370_3712820_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA
>CP029492.1|AWU91969.1|3712944_3713439_-|lipoprotein-signal-peptidase
MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSKAKKQ
>CP029492.1|AWU91970.1|3713438_3716255_-|isoleucine--tRNA-ligase
MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRSAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILNAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTRDVGKVAEHAEICGRCVSNVAGDGEKRKFA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11836-11863	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36521-36548	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9507-9534	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65535-65562	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64166-64193	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119285-119312	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85100-85127	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42117-42144	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87238-87265	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70501-70528	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62998-63025	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	MH422554	Escherichia phage P1, complete genome	87195-87222	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NC_050152	Enterobacteria phage P7, complete genome	93996-94023	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58646-58673	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	MH445381	Escherichia virus P1, complete genome	56871-56898	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42150-42177	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1560-1587	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94759-94786	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61919-61946	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20289-20316	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46691-46718	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81856-81883	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47864-47891	0	1.0
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NC_031129	Salmonella phage SJ46, complete genome	77366-77393	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11836-11863	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36521-36548	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9507-9534	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65535-65562	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64166-64193	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119285-119312	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85100-85127	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42117-42144	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87238-87265	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70501-70528	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62998-63025	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	MH422554	Escherichia phage P1, complete genome	87195-87222	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NC_050152	Enterobacteria phage P7, complete genome	93996-94023	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58646-58673	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	MH445381	Escherichia virus P1, complete genome	56871-56898	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42150-42177	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1560-1587	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94759-94786	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61919-61946	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20289-20316	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46691-46718	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81856-81883	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47864-47891	0	1.0
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NC_031129	Salmonella phage SJ46, complete genome	77366-77393	0	1.0
CP029492_5	5.1\|2689323\|40\|CP029492\|CRISPRCasFinder	2689323-2689362	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
CP029492_2	2.5\|987275\|32\|CP029492\|CRISPRCasFinder,CRT	987275-987306	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
CP029492_2	2.6\|987336\|32\|CP029492\|CRISPRCasFinder,CRT	987336-987367	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17441-17468	2	0.929
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122311-122338	2	0.929
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6030-6057	2	0.929
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131403-131430	2	0.929
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15124-15151	2	0.929
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17441-17468	2	0.929
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122311-122338	2	0.929
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6030-6057	2	0.929
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131403-131430	2	0.929
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15124-15151	2	0.929
CP029492_4	4.1\|2061723\|38\|CP029492\|CRISPRCasFinder	2061723-2061760	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP029492_2	2.7\|987278\|28\|CP029492\|PILER-CR	987278-987305	28	NZ_CP021729	Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence	49002-49029	3	0.893
CP029492_2	2.8\|987339\|28\|CP029492\|PILER-CR	987339-987366	28	NZ_CP021729	Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence	49002-49029	3	0.893
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24789-24826	6	0.842
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24902-24939	6	0.842
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4073-4110	6	0.842
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4072-4109	6	0.842
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4072-4109	6	0.842
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4072-4109	6	0.842
CP029492_1	1.5\|958931\|32\|CP029492\|PILER-CR,CRISPRCasFinder,CRT	958931-958962	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	755173-755204	7	0.781
CP029492_1	1.4\|958870\|32\|CP029492\|PILER-CR,CRISPRCasFinder,CRT	958870-958901	32	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	965187-965218	8	0.75
CP029492_1	1.5\|958931\|32\|CP029492\|PILER-CR,CRISPRCasFinder,CRT	958931-958962	32	NZ_CP007070	Rhizobium leguminosarum bv. trifolii CB782 plasmid unnamed, complete sequence	191920-191951	8	0.75
CP029492_1	1.8\|959114\|32\|CP029492\|CRISPRCasFinder,CRT	959114-959145	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
CP029492_2	2.1\|987031\|32\|CP029492\|CRISPRCasFinder,CRT	987031-987062	32	MF773750	Mycobacterium phage OKCentral2016, complete genome	32038-32069	8	0.75
CP029492_2	2.1\|987031\|32\|CP029492\|CRISPRCasFinder,CRT	987031-987062	32	JX307704	Mycobacterium virus Goose, complete genome	32135-32166	8	0.75
CP029492_2	2.3\|987153\|32\|CP029492\|CRISPRCasFinder,CRT	987153-987184	32	NZ_CP042402	Weissella hellenica strain CBA3632 plasmid unnamed3, complete sequence	12282-12313	8	0.75
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3331-3368	8	0.789
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3330-3367	8	0.789
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3330-3367	8	0.789
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3330-3367	8	0.789
CP029492_2	2.3\|987153\|32\|CP029492\|CRISPRCasFinder,CRT	987153-987184	32	CP003185	Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome	44776-44807	9	0.719
CP029492_2	2.3\|987153\|32\|CP029492\|CRISPRCasFinder,CRT	987153-987184	32	NC_019956	Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence	105005-105036	9	0.719
CP029492_6	6.3\|2827109\|33\|CP029492\|CRISPRCasFinder,CRT	2827109-2827141	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
CP029492_6	6.5\|2827110\|32\|CP029492\|PILER-CR	2827110-2827141	32	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4202	9	0.719
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14114-14151	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51843-51880	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229388-229425	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239882-239919	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230794-230831	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211764-211801	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40383-40420	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313601-313638	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386517-386554	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397090-397127	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404135-404172	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	114998-115035	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40307-40344	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	103-140	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31308-31345	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	8897-8934	9	0.763
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	17901-17938	9	0.763
CP029492_9	9.1\|3365189\|59\|CP029492\|CRISPRCasFinder	3365189-3365247	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56040-56077	10	0.737
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP053046	Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence	58275-58312	10	0.737
CP029492_10	10.1\|3703832\|38\|CP029492\|CRISPRCasFinder	3703832-3703869	38	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30215-30252	10	0.737
CP029492_9	9.1\|3365189\|59\|CP029492\|CRISPRCasFinder	3365189-3365247	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814

1. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

2. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

3. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

4. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

5. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

26. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

27. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

28. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

29. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

30. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

31. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

32. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

33. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

34. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

35. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

36. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

37. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

38. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

39. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

40. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

41. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

42. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

43. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

44. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

45. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

46. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

47. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

48. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

49. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

50. spacer 2.7|987278|28|CP029492|PILER-CR matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

51. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

52. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

53. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

54. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

55. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

56. spacer 2.7|987278|28|CP029492|PILER-CR matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

57. spacer 2.7|987278|28|CP029492|PILER-CR matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

58. spacer 2.7|987278|28|CP029492|PILER-CR matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

59. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

60. spacer 2.7|987278|28|CP029492|PILER-CR matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

61. spacer 2.7|987278|28|CP029492|PILER-CR matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

62. spacer 2.7|987278|28|CP029492|PILER-CR matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

63. spacer 2.7|987278|28|CP029492|PILER-CR matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

64. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

65. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

66. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

67. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

68. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

69. spacer 2.7|987278|28|CP029492|PILER-CR matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

70. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

71. spacer 2.7|987278|28|CP029492|PILER-CR matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

72. spacer 2.7|987278|28|CP029492|PILER-CR matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

73. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

74. spacer 2.8|987339|28|CP029492|PILER-CR matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

75. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

76. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

77. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

78. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

79. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

80. spacer 2.8|987339|28|CP029492|PILER-CR matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

81. spacer 2.8|987339|28|CP029492|PILER-CR matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

82. spacer 2.8|987339|28|CP029492|PILER-CR matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

83. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

84. spacer 2.8|987339|28|CP029492|PILER-CR matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

85. spacer 2.8|987339|28|CP029492|PILER-CR matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

86. spacer 2.8|987339|28|CP029492|PILER-CR matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

87. spacer 2.8|987339|28|CP029492|PILER-CR matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

88. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

89. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

90. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

91. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

92. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

93. spacer 2.8|987339|28|CP029492|PILER-CR matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

94. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

95. spacer 2.8|987339|28|CP029492|PILER-CR matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

96. spacer 2.8|987339|28|CP029492|PILER-CR matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctgaaccgacattcatg	Protospacer
****************************

97. spacer 5.1|2689323|40|CP029492|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

98. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

99. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

100. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

101. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

102. spacer 2.5|987275|32|CP029492|CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

103. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

104. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

105. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

106. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

107. spacer 2.6|987336|32|CP029492|CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

108. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
gaaaacacgttctgaaccgacattcatg	Protospacer
.******** ******************

109. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
gaaaacacgttctgaaccgacattcatg	Protospacer
.******** ******************

110. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctaaaccgtcattcatg	Protospacer
*************.***** ********

111. spacer 2.7|987278|28|CP029492|PILER-CR matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacgttatgaaccgacattcatg	Protospacer
********* * ****************

112. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctaaaccgtcattcatg	Protospacer
*************.***** ********

113. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
gaaaacacgttctgaaccgacattcatg	Protospacer
.******** ******************

114. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
gaaaacacgttctgaaccgacattcatg	Protospacer
.******** ******************

115. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctaaaccgtcattcatg	Protospacer
*************.***** ********

116. spacer 2.8|987339|28|CP029492|PILER-CR matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacgttatgaaccgacattcatg	Protospacer
********* * ****************

117. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.929

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
aaaaacacggtctaaaccgtcattcatg	Protospacer
*************.***** ********

118. spacer 4.1|2061723|38|CP029492|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

119. spacer 2.7|987278|28|CP029492|PILER-CR matches to NZ_CP021729 (Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence) position: , mismatch: 3, identity: 0.893

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
gaaaacacgttatgaaccgacattcatg	Protospacer
.******** * ****************

120. spacer 2.8|987339|28|CP029492|PILER-CR matches to NZ_CP021729 (Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence) position: , mismatch: 3, identity: 0.893

aaaaacacggtctgaaccgacattcatg	CRISPR spacer
gaaaacacgttatgaaccgacattcatg	Protospacer
.******** * ****************

121. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

122. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

123. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

124. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

125. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

126. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

127. spacer 1.5|958931|32|CP029492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

acgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
ccgtggtcgtgggtgctgctgttgctggagcg	Protospacer
 *******.**************** *.. *.

128. spacer 1.4|958870|32|CP029492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgctgacgcggtaaaaagcggggcgtgattcg	CRISPR spacer
gactgacgcggtaaaaggcggagcgggcattg	Protospacer
 .**************.****.*** *  *.*

129. spacer 1.5|958931|32|CP029492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007070 (Rhizobium leguminosarum bv. trifolii CB782 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
atgcggtcatggatgctgatgttgcagtgatg	Protospacer
*.*.********.***** ******** * ..

130. spacer 1.8|959114|32|CP029492|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

131. spacer 2.1|987031|32|CP029492|CRISPRCasFinder,CRT matches to MF773750 (Mycobacterium phage OKCentral2016, complete genome) position: , mismatch: 8, identity: 0.75

gagcgtagagattctcgaaaccgatccggacg	CRISPR spacer
cctcgtagagatcctcgaagccgatctcggcg	Protospacer
   *********.******.******. *.**

132. spacer 2.1|987031|32|CP029492|CRISPRCasFinder,CRT matches to JX307704 (Mycobacterium virus Goose, complete genome) position: , mismatch: 8, identity: 0.75

gagcgtagagattctcgaaaccgatccggacg	CRISPR spacer
cctcgtagagatcctcgaagccgatctcggcg	Protospacer
   *********.******.******. *.**

133. spacer 2.3|987153|32|CP029492|CRISPRCasFinder,CRT matches to NZ_CP042402 (Weissella hellenica strain CBA3632 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
gtaataaaaaatctactatttctgattttaga	Protospacer
************ * ********* *     *

134. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

135. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

136. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

137. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

138. spacer 2.3|987153|32|CP029492|CRISPRCasFinder,CRT matches to CP003185 (Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome) position: , mismatch: 9, identity: 0.719

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
ataataaataatattctgtttctgtgtgttta	Protospacer
.******* ********.******.  . *.*

139. spacer 2.3|987153|32|CP029492|CRISPRCasFinder,CRT matches to NC_019956 (Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence) position: , mismatch: 9, identity: 0.719

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
ataataaataatattctgtttctgtgtgttta	Protospacer
.******* ********.******.  . *.*

140. spacer 6.3|2827109|33|CP029492|CRISPRCasFinder,CRT matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

141. spacer 6.5|2827110|32|CP029492|PILER-CR matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.719

ttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
ttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
*************.* ******** ..*..

142. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tgattgccggatgcggcgtaaacgccttatccggccta	Protospacer
*...**.**********.**************..**..

143. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ctggtgccggatgcggcgtaaacgccttatccggccta	Protospacer
. * **.**********.**************..**..

144. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

145. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

146. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

147. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

148. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

149. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aaaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
 *. **.**********.**************..**..

150. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caagtgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

151. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caattgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*..**.**********.**************..**..

152. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttcttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

153. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
. .***.**********.**************. **..

154. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttatgccggatgcggcgtaaacgccttatccggccta	Protospacer
*   **.**********.**************..**..

155. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
atgttgccggatgcggcgtaaacgccttatccggccta	Protospacer
  *.**.**********.**************..**..

156. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

157. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cggttgccggatgcggcgtaaacgccttatccggccta	Protospacer
..*.**.**********.**************..**..

158. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
gacttgccggatgcggcgtaaacgccttatccggccac	Protospacer
 * .**.**********.**************..**

159. spacer 9.1|3365189|59|CP029492|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

160. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccattgccggatgcggcgtaaacgccttatccggccta	Protospacer
. ..**.**********.**************..**..

161. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aggttgccggatgcggcgtaaacgccttatccggcata	Protospacer
 .*.**.**********.**************..* ..

162. spacer 10.1|3703832|38|CP029492|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatctggccta	Protospacer
.*. **.**********.*************...**..

163. spacer 9.1|3365189|59|CP029492|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

994821 : 1008004

Escherichia_phage(40.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWU89509.1\|994821_995583_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
AWU89510.1\|995576_996203_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
AWU89511.1\|996342_997482_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
AWU89512.1\|997544_998537_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
AWU89513.1\|998630_999995_-	GntP family transporter	NA	NA	NA	NA
AWU89514.1\|1000083_1000860_-	HPr family phosphocarrier protein	NA	NA	NA	NA
AWU89515.1\|1000864_1001503_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AWU89516.1\|1001499_1002762_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	8.3e-135	61.0
AWU89517.1\|1002758_1003667_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AWU89518.1\|1003862_1004630_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
AWU89519.1\|1004680_1005337_-	protein-serine/threonine phosphatase	K7P7V3	Enterobacteria_phage	3.3e-50	45.8
AWU89520.1\|1005442_1008004_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.7

DBSCAN-SWA_2

1599560 : 1609002

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWU90044.1\|1599560_1600487_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8
AWU90045.1\|1600491_1601223_+	osmoprotectant uptake system permease	NA	NA	NA	NA
AWU90046.1\|1601203_1601311_-	hypothetical protein	NA	NA	NA	NA
AWU90047.1\|1601370_1602102_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AWU90048.1\|1602323_1604009_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AWU90049.1\|1604005_1604725_+	DNA-binding response regulator	NA	NA	NA	NA
AWU90050.1\|1604771_1605242_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AWU90051.1\|1605282_1605744_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.6e-75	98.7
AWU90052.1\|1605868_1607869_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.6
AWU90053.1\|1607865_1609002_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-162	97.7

DBSCAN-SWA_3

1699790 : 1706084

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWU90125.1\|1699790_1701185_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.7e-19	33.0
AWU90126.1\|1701359_1702253_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	3.9e-46	42.0
AWU90127.1\|1702289_1702553_-	hypothetical protein	NA	NA	NA	NA
AWU90128.1\|1702625_1703711_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.0e-102	54.2
AWU90129.1\|1703710_1704610_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.5
AWU90130.1\|1704667_1705546_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.5e-106	64.1
AWU90131.1\|1705550_1706084_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.1e-51	58.7

DBSCAN-SWA_4

2349142 : 2374707

Escherichia_phage(40.0%)

terminase,holin,transposase,lysis,integrase

attL 2344186:2344200|attR 2379305:2379319

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2344186:2344200	attL	NA	NA	NA	NA
AWU90709.1\|2349142_2349376_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
AWU90710.1\|2350850_2351945_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	5.9e-113	80.5
AWU90711.1\|2351948_2352158_-	hypothetical protein	NA	NA	NA	NA
AWU90712.1\|2352135_2353068_-	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.4e-83	54.9
AWU90713.1\|2353060_2353852_-	transcriptional regulator	R4TG31	Halovirus	1.3e-48	40.7
AWU90714.1\|2353769_2354051_-	hypothetical protein	NA	NA	NA	NA
AWU90715.1\|2353989_2355447_-	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
AWU90716.1\|2355643_2355829_-	hypothetical protein	K7PHU6	Enterobacteria_phage	3.6e-15	96.5
AWU90717.1\|2356045_2356543_-	lysozyme	M1FJA0	Enterobacteria_phage	1.6e-89	96.4
AWU90718.1\|2356542_2356758_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.3e-32	94.4
AWU92680.1\|2357009_2357384_-	tolA family protein	NA	NA	NA	NA
AWU90719.1\|2357555_2357984_-	cell envelope integrity protein TolA	NA	NA	NA	NA
AWU90720.1\|2359028_2359571_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	2.9e-76	75.7
AWU90721.1\|2359567_2359858_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
AWU90722.1\|2359857_2360457_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
AWU90723.1\|2360925_2361138_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	3.0e-21	75.7
AWU90724.1\|2361296_2361440_-	hypothetical protein	NA	NA	NA	NA
AWU90725.1\|2361801_2363001_+	MFS transporter	NA	NA	NA	NA
AWU90726.1\|2363012_2363705_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
AWU90727.1\|2363701_2364583_+	LysR family transcriptional regulator	NA	NA	NA	NA
AWU90728.1\|2364713_2365991_-	DUF2254 domain-containing protein	NA	NA	NA	NA
AWU90729.1\|2366054_2368058_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-21	26.2
AWU92681.1\|2368152_2369127_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
AWU90730.1\|2369322_2370948_+	phosphoethanolamine--lipid A transferase MCR-1.1	NA	NA	NA	NA
AWU90731.1\|2370995_2371742_+	PAP2 family protein	NA	NA	NA	NA
AWU92682.1\|2371831_2372806_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
AWU90732.1\|2374131_2374707_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	9.7e-107	98.9
2379305:2379319	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2947109 : 2993225

Enterobacteria_phage(55.0%)

terminase,portal,integrase,head,capsid,tail,lysis

attL 2957212:2957227|attR 3002195:3002210

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWU91255.1\|2947109_2948441_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-20	37.1
AWU91256.1\|2948514_2949099_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.1e-102	94.3
AWU91257.1\|2949098_2952581_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	2.5e-11	37.3
AWU91258.1\|2952645_2953245_-	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	1.4e-108	98.0
AWU91259.1\|2953311_2956794_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.8
AWU91260.1\|2956854_2957526_-\|tail	tail assembly protein	C6ZCZ4	Enterobacteria_phage	3.8e-102	98.2
2957212:2957227	attL	NA	NA	NA	NA
AWU91261.1\|2957423_2958167_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-146	96.4
AWU91262.1\|2958172_2958871_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
AWU91263.1\|2958870_2959200_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
AWU91264.1\|2959196_2961776_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	90.5
AWU91265.1\|2961768_2962203_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AWU91266.1\|2962184_2962607_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
AWU92715.1\|2962622_2963363_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.7e-128	96.7
AWU91267.1\|2963370_2963766_-\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
AWU91268.1\|2963762_2964341_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
AWU91269.1\|2964352_2964706_-\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
AWU91270.1\|2964717_2965113_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.1e-58	95.5
AWU91271.1\|2965154_2966180_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	4.7e-189	97.9
AWU91272.1\|2966235_2966568_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
AWU91273.1\|2966577_2967897_-\|capsid	capsid assembly protein	A0A2I6TC87	Escherichia_phage	1.0e-231	97.9
AWU91274.1\|2967877_2969479_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.9e-310	99.4
AWU91275.1\|2969475_2969682_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AWU91276.1\|2969678_2971604_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
AWU91277.1\|2971578_2972124_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AWU91278.1\|2972263_2972407_-	DNA-packaging protein	NA	NA	NA	NA
AWU91279.1\|2972512_2972746_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
AWU91280.1\|2972805_2973216_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.7e-55	77.8
AWU91281.1\|2973303_2973438_+	hypothetical protein	NA	NA	NA	NA
AWU91282.1\|2973518_2974043_-	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	4.5e-87	94.2
AWU91283.1\|2974245_2974398_-	hypothetical protein	Q716B2	Shigella_phage	3.1e-20	98.0
AWU91284.1\|2974394_2974853_-\|lysis	lysis protein	Q9AZ06	Salmonella_phage	9.8e-70	92.8
AWU91285.1\|2974849_2975347_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
AWU91286.1\|2975346_2975562_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	9.0e-34	100.0
AWU91287.1\|2976151_2977234_+	porin OmpD	Q1MVN1	Enterobacteria_phage	4.4e-161	78.7
AWU91288.1\|2977422_2977806_-	antitermination protein Q	A0A088CD47	Shigella_phage	4.4e-55	83.3
AWU91289.1\|2977891_2978032_-	YlcG family protein	K7PHH3	Enterobacteria_phage	3.6e-07	65.1
AWU91290.1\|2978028_2978391_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	9.5e-60	95.7
AWU91291.1\|2978410_2978605_-	protein ninF	NA	NA	NA	NA
AWU91292.1\|2978597_2978981_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	1.7e-62	96.5
AWU91293.1\|2978941_2979118_-	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
AWU91294.1\|2979114_2979642_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
AWU91295.1\|2979638_2980097_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.3e-81	100.0
AWU91296.1\|2980152_2980443_-	protein ren	A0A1I9LJP5	Stx_converting_phage	9.6e-47	100.0
AWU91297.1\|2980439_2981141_-	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.3e-129	99.6
AWU91298.1\|2981137_2982037_-	Replication protein O	M1FN81	Enterobacteria_phage	6.5e-174	99.7
AWU91299.1\|2982071_2982350_-	hypothetical protein	K7P7A2	Enterobacteria_phage	1.6e-43	100.0
AWU91300.1\|2982458_2982644_-	hypothetical protein	A5VW97	Enterobacteria_phage	1.6e-26	100.0
AWU91301.1\|2982724_2983375_+	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	4.1e-122	98.6
AWU91302.1\|2983687_2983960_+	hypothetical protein	K7PH69	Enterobacterial_phage	4.0e-26	96.7
AWU91303.1\|2983976_2984558_-	superinfection exclusion protein B	Q9EYA9	Enterobacteria_phage	4.0e-100	100.0
AWU91304.1\|2984818_2985187_+	lambda prophage-derived protein ea10	M1FPD2	Enterobacteria_phage	2.0e-65	100.0
AWU91305.1\|2985266_2985536_+	host cell division inhibitory peptide Kil	M1FN78	Enterobacteria_phage	1.7e-42	100.0
AWU91306.1\|2985490_2985907_+	Host-nuclease inhibitor protein gam	A0A0P0ZBR6	Stx2-converting_phage	5.6e-72	98.6
AWU91307.1\|2985912_2986698_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
AWU91308.1\|2986694_2987375_+	exonuclease	Q6H9Z0	Enterobacteria_phage	1.2e-132	100.0
AWU91309.1\|2987371_2987530_+	cruciferin	A0A1U8QQC1	Enterobacteria_phage	2.6e-22	96.2
AWU91310.1\|2987526_2988771_+	phosphoadenosine phosphosulfate reductase	Q8W6P3	Burkholderia_virus	7.1e-46	34.0
AWU91311.1\|2988782_2989385_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AWU91312.1\|2989381_2989960_-	hypothetical protein	NA	NA	NA	NA
AWU91313.1\|2990329_2990551_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.9e-35	100.0
AWU91314.1\|2990547_2990919_+	ead/Ea22-like family protein	A0A0K2FJF6	Enterobacteria_phage	9.2e-34	91.4
AWU91315.1\|2990915_2991569_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.8e-62	48.5
AWU91316.1\|2991665_2991845_+	Eag protein	K7PL40	Enterobacteria_phage	7.3e-29	98.3
AWU91317.1\|2991958_2992177_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
AWU91318.1\|2992154_2993225_+\|integrase	integrase	K7P6P6	Enterobacteria_phage	1.5e-201	99.7
3002195:3002210	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029493

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16 : 63689

Escherichia_phage(33.33%)

integrase,plate,transposase

attL 12200:12259|attR 76011:76142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOO34910.1\|16_901_+	RepB family plasmid replication initiator protein	A0A077SLP3	Escherichia_phage	2.1e-161	100.0
AOO34911.1\|1193_2003_+	GIY-YIG nuclease family protein	A0A077SK46	Escherichia_phage	1.3e-154	97.4
AOO34912.1\|2171_3368_+	ParA family protein	A0A077SL49	Escherichia_phage	1.6e-225	100.0
AOO34913.1\|3384_4386_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.7e-178	100.0
AOO34914.1\|4611_6318_+	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	100.0
AOO34915.1\|6377_7967_+	hypothetical protein	A0A1B0V7E4	Salmonella_phage	4.9e-302	97.9
AOO34916.1\|7976_8792_+	hypothetical protein	A0A1B0V835	Salmonella_phage	3.9e-109	97.0
AOO34917.1\|8827_9409_+	hypothetical protein	Q71TM4	Escherichia_phage	1.8e-100	96.9
AOO34918.1\|9420_9930_+\|plate	baseplate protein	Q1MVJ9	Enterobacteria_phage	6.6e-91	99.4
AOO34919.1\|11395_11551_-	type I toxin-antitoxin system hok family toxin	A0A1I9LJU7	Stx_converting_phage	4.0e-15	90.2
AOO34920.1\|11948_12287_+	hypothetical protein	U5P4I9	Shigella_phage	1.6e-32	91.2
12200:12259	attL	NA	NA	NA	NA
AOO34921.2\|12311_12650_+	hypothetical protein	U5P429	Shigella_phage	9.6e-38	87.8
AOO34922.2\|12652_13866_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	3.5e-167	98.0
AWU92768.1\|14289_14541_-	hypothetical protein	NA	NA	NA	NA
AOO34925.1\|14693_15119_+	peptidase	A0A1W6JNS2	Morganella_phage	2.9e-31	50.4
AOO34926.1\|15118_16390_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.0e-153	63.3
AOO34927.1\|16706_17915_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.7e-190	81.8
AOO34929.1\|19138_20110_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.2e-155	89.7
AOO34930.1\|20109_21276_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	3.0e-224	97.7
AOO34931.1\|22016_23027_+	replication initiation protein	J9Q7H0	Salmonella_phage	6.7e-87	53.9
AOO34933.1\|23671_24376_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AOO34934.1\|24968_25874_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
AOO34935.1\|27107_27692_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AWU92769.1\|27637_27994_+	hypothetical protein	NA	NA	NA	NA
AOO34936.1\|28096_28789_-	hypothetical protein	B1B6L9	Salmonella_phage	1.3e-25	39.1
AOO34937.1\|28896_29115_+	hypothetical protein	NA	NA	NA	NA
AWU92770.1\|29197_29575_+	hypothetical protein	Q6JIG6	Burkholderia_virus	2.0e-07	38.4
AOO34938.1\|29546_30311_-\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AOO34939.1\|31620_34608_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-294	53.4
AOO34940.1\|35056_35506_-	DNA-binding protein	NA	NA	NA	NA
AOO34941.1\|35517_37842_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	6.0e-38	28.2
AOO34942.1\|37861_38107_-	hypothetical protein	NA	NA	NA	NA
AOO34943.1\|38521_38992_-	micrococcal nuclease	A0A0R6PHV6	Moraxella_phage	2.8e-19	37.1
AOO34944.1\|39119_39956_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AOO34945.1\|39955_40759_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AOO34946.1\|40819_41635_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AOO34949.1\|42566_43271_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AOO34951.1\|45926_46631_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AOO34952.1\|46835_47627_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AWU92771.1\|47632_47923_-	DUF1010 domain-containing protein	NA	NA	NA	NA
AOO34953.1\|48034_48532_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
AOO34955.1\|48936_49641_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AOO34956.1\|49830_50646_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AOO34957.1\|50796_51501_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AOO34958.1\|51731_52595_+	KR domain-containing protein	W8CYX9	Bacillus_phage	2.5e-05	31.0
AOO34959.1\|52632_52878_+	hypothetical protein	NA	NA	NA	NA
AOO34961.1\|53346_54138_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
AWU92772.1\|54992_55178_-	hypothetical protein	NA	NA	NA	NA
AOO34962.1\|55317_55650_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
AOO34963.1\|55819_56611_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AOO34964.1\|56703_57963_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
AOO34965.1\|58224_59016_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AOO34966.1\|59073_59682_-	HAD-IB family hydrolase	NA	NA	NA	NA
AOO34967.1\|59777_60620_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA
AOO34968.1\|60786_61800_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWU92773.1\|61738_62353_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AOO34971.1\|62528_63089_+\|transposase	transposase	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
AWU92774.1\|63092_63689_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.7e-64	85.1
76011:76142	attR	NA	NA	NA	NA

DBSCAN-SWA_2

68996 : 143825

Escherichia_phage(44.44%)

integrase,transposase

attL 68159:68218|attR 119370:120120

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
68159:68218	attL	NA	NA	NA	NA
AOO34977.1\|68996_70073_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AOO34981.1\|71415_71832_-	PIN domain-containing protein	NA	NA	NA	NA
AOO34982.1\|71828_72059_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AOO34983.1\|72854_73559_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AOO34986.1\|74966_75995_+\|integrase	integrase	Q5XLQ5	Enterobacteria_phage	2.2e-61	42.4
AOO34988.1\|76957_77881_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.4e-176	99.7
AOO34989.1\|78506_78893_+	hypothetical protein	NA	NA	NA	NA
AOO34990.1\|79032_79956_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.8e-171	96.4
AOO34992.1\|80508_81021_-	hypothetical protein	NA	NA	NA	NA
AWU92775.1\|83509_84723_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
AWU92776.1\|85425_85617_+	hypothetical protein	Q6QLL3	Human_immunodeficiency_virus	2.1e-13	100.0
AOO35000.2\|85654_86671_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
AOO35001.1\|88004_88727_-	hypothetical protein	NA	NA	NA	NA
AOO35002.1\|88723_89209_-	plasmid transfer protein	NA	NA	NA	NA
AWU92777.1\|89863_90838_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
AOO35004.2\|90927_91674_-	PAP2 family protein	NA	NA	NA	NA
AWU92778.1\|91721_93347_-	phosphoethanolamine--lipid A transferase MCR-1.1	NA	NA	NA	NA
AWU92779.1\|93542_94517_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
AOO35007.1\|94984_95515_+	hypothetical protein	NA	NA	NA	NA
AOO35008.1\|96642_97689_+	thioredoxin family protein	NA	NA	NA	NA
AWU92780.1\|97678_98128_+	hypothetical protein	NA	NA	NA	NA
AOO35009.1\|99859_103375_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	2.7e-98	36.1
AOO35010.1\|103744_103945_+	DUF839 domain-containing protein	NA	NA	NA	NA
AOO35011.1\|104234_104522_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	4.5e-20	50.5
AOO35012.1\|104518_104770_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AWU92781.1\|105022_105154_+	replication protein RepA4	NA	NA	NA	NA
AWU92782.1\|105381_109320_+	helicase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.2
AOO35013.1\|109353_109794_+	peptide-binding protein	Q71TR9	Escherichia_phage	3.8e-79	99.3
AOO35014.1\|109790_110039_+	modulator protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
AOO35015.1\|111033_111684_+	EAL domain-containing protein	NA	NA	NA	NA
AOO35016.1\|111776_112421_-	maturation control protein	A0A1B0VAG4	Salmonella_phage	1.7e-96	86.3
AOO35017.1\|112609_113170_-	recombinase	Q71TG3	Escherichia_phage	1.0e-100	98.9
AOO35018.1\|113419_113731_-	lysogeny establishment protein	Q5XLQ4	Enterobacteria_phage	2.8e-44	93.2
AOO35019.1\|113781_114813_-	recombinase	Q71TG5	Escherichia_phage	3.2e-193	99.1
AOO35020.1\|114820_115042_-	creatininase	Q5QBN7	Enterobacteria_phage	5.8e-36	98.6
AOO35021.1\|115453_115567_+	peptidase	Q5XLQ7	Enterobacteria_phage	3.2e-14	100.0
AOO35022.1\|115585_115681_+	peptidase	Q38402	Escherichia_phage	2.8e-11	100.0
AOO35023.1\|115646_115856_+	c1 repressor inactivator	A0A077SK26	Escherichia_phage	1.8e-31	100.0
AOO35024.1\|115966_116818_+	hypothetical protein	A0A077SLM8	Escherichia_phage	1.0e-157	99.3
AWU92783.1\|116850_117162_-	phage antirepressor Ant	A0A077SLR9	Escherichia_phage	2.9e-49	98.0
AOO35025.1\|117464_118508_-	DUF968 domain-containing protein	A0A077SLM1	Escherichia_phage	1.5e-203	98.6
AOO35026.1\|118535_118673_-	pdcA	Q71TH5	Escherichia_phage	2.4e-16	97.8
AOO35029.1\|120827_121532_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
119370:120120	attR	NA	NA	NA	NA
AOO35031.1\|122499_123714_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	3.2e-19	29.1
AOO35032.1\|123741_124047_+	LysR family transcriptional regulator	NA	NA	NA	NA
AOO35033.1\|124158_125652_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AOO35034.1\|125682_125928_+	hypothetical protein	NA	NA	NA	NA
AOO35035.1\|125939_126644_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AOO35037.1\|127261_128122_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AOO35040.2\|129118_130585_+	HAMP domain-containing protein	A0A1B0V854	Salmonella_phage	3.6e-73	98.6
AOO35041.1\|130820_131201_-	type II toxin-antitoxin system death-on-curing family toxin	Q71T66	Escherichia_phage	9.7e-63	99.2
AOO35042.1\|131200_131422_-	type II toxin-antitoxin system prevent-host-death family antitoxin	A0A222YXU1	Escherichia_phage	3.3e-31	98.6
AOO35044.1\|132799_134062_-	hypothetical protein	Q1MVG4	Enterobacteria_phage	3.9e-233	99.0
AOO35045.1\|134063_134282_-	hypothetical protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
AOO35046.1\|134363_135065_-	hypothetical protein	A0A077SLK3	Escherichia_phage	2.8e-140	97.4
AOO35047.1\|135735_136362_-	norphogenetic protein	Q1MVG8	Enterobacteria_phage	2.1e-123	100.0
AOO35048.1\|136259_136922_-	norphogenetic protein	Q71T83	Escherichia_phage	4.5e-124	100.0
AOO35049.1\|136863_137019_-	norphogenetic protein	Q1MVH0	Enterobacteria_phage	1.2e-19	98.0
AOO35050.1\|137471_137822_+	hypothetical protein	Q716C1	Shigella_phage	5.2e-39	97.7
AOO35051.1\|137741_138893_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.6e-42	35.6
AOO35052.2\|138849_139263_-	hypothetical protein	Q716C1	Shigella_phage	8.7e-17	53.5
AOO35053.1\|139654_140389_-	AraC family transcriptional regulator	NA	NA	NA	NA
AWU92784.1\|140585_141859_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	6.1e-170	95.3
AOO35056.1\|141980_142748_+	hypothetical protein	NA	NA	NA	NA
AOO35057.1\|142800_143160_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.5e-44	97.9
AOO35058.1\|143159_143825_-	plasmid stability protein	J9Q7R7	Salmonella_phage	2.0e-116	98.2

DBSCAN-SWA_3

148556 : 160933

Erysipelothrix_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOO35063.2\|148556_149770_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.8e-166	98.0
AOO35065.1\|149891_150242_-	hypothetical protein	Q716C1	Shigella_phage	1.4e-39	98.9
AWU92785.1\|150424_151603_+	recombinase	J9Q736	Salmonella_phage	2.5e-157	95.6
AOO35066.1\|151904_154982_-	restriction endonuclease subunit R	A0A2K5B2C2	Erysipelothrix_phage	1.6e-126	33.1
AOO35067.1\|154991_156836_-	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	1.2e-121	40.6
AOO35068.1\|156910_157597_-	DUF4391 domain-containing protein	NA	NA	NA	NA
AOO35069.1\|157600_160933_-	helicase	A0A2K5B2B9	Erysipelothrix_phage	3.3e-239	41.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029492

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029493

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection