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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP021971 Hafnia alvei strain CBA7135 chromosome, complete genome 5 crisprs WYL,DEDDh,RT,cas3,DinG,csa3 0 17 4 0

Results visualization

1. CP021971
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021971_1 775639-775764 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021971_2 1095447-1096017 Orphan I-F
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021971_3 1109158-1109248 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021971_4 2752507-2753015 Orphan I-F
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021971_5 2812118-2812925 Orphan I-F
13 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP021971_5 5.7|2812506|32|CP021971|CRISPRCasFinder,PILER-CR 2812506-2812537 32 NZ_CP050151 Hafnia alvei strain A23BA plasmid pA23BA, complete sequence 63331-63362 0 1.0
CP021971_5 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR 2812806-2812837 32 NZ_CP015380 Hafnia alvei strain HUMV-5920 plasmid unnamed, complete sequence 30173-30204 2 0.938
CP021971_5 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR 2812806-2812837 32 NZ_CP050151 Hafnia alvei strain A23BA plasmid pA23BA, complete sequence 62346-62377 2 0.938
CP021971_4 4.1|2752535|32|CP021971|CRISPRCasFinder,CRT 2752535-2752566 32 NZ_CP015380 Hafnia alvei strain HUMV-5920 plasmid unnamed, complete sequence 27014-27045 3 0.906
CP021971_5 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR 2812806-2812837 32 NZ_CP050151 Hafnia alvei strain A23BA plasmid pA23BA, complete sequence 56813-56844 3 0.906
CP021971_5 5.20|2812502|36|CP021971|CRT 2812502-2812537 36 NZ_CP050151 Hafnia alvei strain A23BA plasmid pA23BA, complete sequence 63327-63362 3 0.917
CP021971_5 5.25|2812802|36|CP021971|CRT 2812802-2812837 36 NZ_CP050151 Hafnia alvei strain A23BA plasmid pA23BA, complete sequence 62342-62377 5 0.861
CP021971_5 5.25|2812802|36|CP021971|CRT 2812802-2812837 36 NZ_CP015380 Hafnia alvei strain HUMV-5920 plasmid unnamed, complete sequence 30173-30208 5 0.861
CP021971_2 2.7|1095837|32|CP021971|PILER-CR,CRISPRCasFinder,CRT 1095837-1095868 32 MT521992 Rhodococcus phage NiceHouse, complete genome 45539-45570 6 0.812
CP021971_5 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR 2812806-2812837 32 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 155907-155938 6 0.812
CP021971_5 5.25|2812802|36|CP021971|CRT 2812802-2812837 36 NZ_CP050151 Hafnia alvei strain A23BA plasmid pA23BA, complete sequence 56809-56844 6 0.833
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP038925 Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence 22633-22664 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP038813 Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence 22633-22664 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP033943 Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence 58127-58158 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP013780 Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence 70615-70646 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP038915 Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence 22633-22664 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP039207 Piscirickettsia salmonis strain Psal-182 plasmid unnamed3, complete sequence 37539-37570 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP038934 Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence 22633-22664 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP038974 Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence 36058-36089 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP038888 Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence 22633-22664 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP039216 Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence 37270-37301 7 0.781
CP021971_5 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR 2812386-2812417 32 NZ_CP038878 Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence 22633-22664 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_CP026284 Klebsiella oxytoca strain KONIH2 plasmid pKOR-5873, complete sequence 89747-89778 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_KX523900 Klebsiella pneumoniae strain Kpn-04963/15 plasmid pOXA-48_4963, complete sequence 20014-20045 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_KX009507 Escherichia coli strain 06K2206 plasmid LM6771, complete sequence 59503-59534 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NC_019368 Enterobacter cloacae plasmid pEl1573, complete sequence 14731-14762 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_KM877517 Enterobacter cloacae strain CRE623 plasmid pIMP-HB623, complete sequence 96620-96651 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 AP018454 Klebsiella pneumoniae plasmid pMRY13-133KPN_2 DNA, complete genome, strain: MRY13-133 42355-42386 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 AP018455 Klebsiella aerogenes plasmid pMRY13-134EAE_1 DNA, complete genome, strain: MRY13-134 51373-51404 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 CP048042 Serratia liquefaciens strain JL02 plasmid unnamed1, complete sequence 20312-20343 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_CP026156 Klebsiella pneumoniae strain B12(AN) plasmid pB12AN_1, complete sequence 21708-21739 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NC_004464 Citrobacter freundii plasmid pCTX-M3, complete sequence 17789-17820 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_CP035217 Klebsiella michiganensis strain M82255 plasmid pKOCBH-C, complete sequence 4752-4783 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_CP042501 Enterobacter sp. E76 plasmid pE76_002, complete sequence 59407-59438 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_CP048339 Escherichia coli strain 142 plasmid p142_B, complete sequence 21946-21977 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 NZ_CP042509 Leclercia adecarboxylata strain E1 plasmid pE1_004, complete sequence 44876-44907 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556214 Escherichia coli CEX24 plasmid pCEX24 DNA, complete sequence 42094-42125 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556215 Escherichia coli CEX25 plasmid pCEX25 DNA, complete sequence 42094-42125 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556216 Escherichia coli CEX14 plasmid pCEX14 DNA, complete sequence 42094-42125 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556217 Escherichia coli CEX3 plasmid pCEX3 DNA, complete sequence 42094-42125 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556218 Enterobacter cloacae CEX5 plasmid pCEX5 DNA, complete sequence 42094-42125 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556219 Enterobacter cloacae CEX6 plasmid pCEX6 DNA, complete sequence 42094-42125 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556220 Enterobacter cloacae CEX4 plasmid pCEX4 DNA, complete sequence 42094-42125 7 0.781
CP021971_5 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR 2812866-2812897 32 LC556221 Klebsiella pneumoniae CEX18 plasmid pCEX18 DNA, complete sequence 42094-42125 7 0.781
CP021971_2 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT 1095777-1095808 32 NZ_CP039899 Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence 353172-353203 8 0.75
CP021971_2 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT 1095777-1095808 32 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 587410-587441 8 0.75
CP021971_2 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT 1095777-1095808 32 NZ_CP039890 Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence 353172-353203 8 0.75
CP021971_4 4.2|2752595|32|CP021971|CRISPRCasFinder,CRT,PILER-CR 2752595-2752626 32 NZ_CP008935 Geobacillus stearothermophilus 10 plasmid unnamed, complete sequence 10215-10246 8 0.75
CP021971_4 4.6|2752835|32|CP021971|CRISPRCasFinder,CRT,PILER-CR 2752835-2752866 32 MN694706 Marine virus AFVG_250M574, complete genome 50372-50403 8 0.75
CP021971_5 5.1|2812146|32|CP021971|CRISPRCasFinder 2812146-2812177 32 AP014315 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C66, *** SEQUENCING IN PROGRESS *** 10396-10427 8 0.75
CP021971_4 4.4|2752715|32|CP021971|CRISPRCasFinder,CRT,PILER-CR 2752715-2752746 32 NC_009930 Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence 101105-101136 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018472 Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence 142523-142554 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP023286 Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence 204425-204456 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018859 Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence 186555-186586 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018851 Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence 164263-164294 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018848 Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence 14972-15003 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018855 Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence 1957-1988 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018729 Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence 2124-2155 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018726 Xanthomonas vesicatoria ATCC 35937 strain LMG911 plasmid pLMG911.1, complete sequence 186495-186526 9 0.719
CP021971_5 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR 2812206-2812237 32 NZ_CP018732 Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.1, complete sequence 101044-101075 9 0.719
CP021971_5 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR 2812326-2812357 32 MG945819 UNVERIFIED: Microviridae sp. isolate 5863-1801, complete genome 1427-1458 9 0.719
CP021971_5 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR 2812326-2812357 32 JQ680364 Unidentified phage clone 2200_scaffold1335 genomic sequence 27029-27060 9 0.719
CP021971_5 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR 2812326-2812357 32 MG945771 UNVERIFIED: Microviridae sp. isolate 3823-1801, complete genome 1427-1458 9 0.719
CP021971_5 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR 2812326-2812357 32 KT264776 Gokushovirus WZ-2015a isolate 28Mky14, complete genome 4551-4582 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349297 Cyanophage S-RIM44 isolate W2_10_0709, complete genome 183774-183805 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349326 Cyanophage S-RIM12 isolate WH_05_0310, complete genome 162565-162596 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349327 Cyanophage S-RIM12 isolate WH_07_0310, complete genome 161672-161703 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KJ019069 Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome 180875-180906 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 NC_031900 Synechococcus phage S-CAM4 isolate 0809SB33, complete genome 180751-180782 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349324 Cyanophage S-RIM12 isolate W1_12_0610, complete genome 162705-162736 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349308 Cyanophage S-RIM12 isolate Np_15_0310, complete genome 162565-162596 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349316 Cyanophage S-RIM12 isolate RW_22_0110, complete genome 162351-162382 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KU686202 Synechococcus phage S-CAM4 isolate 1010NB23, complete genome 180386-180417 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KU686200 Synechococcus phage S-CAM4 isolate 0309CC44, complete genome 180705-180736 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349315 Cyanophage S-RIM12 isolate RW_14_0101, complete genome 162044-162075 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KU594607 Cyanophage S-RIM44 isolate W2_07_0710, complete genome 183492-183523 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349317 Cyanophage S-RIM12 isolate RW_25_0210, complete genome 162191-162222 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349311 Cyanophage S-RIM12 isolate RW_04_0310, complete genome 162562-162593 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349323 Cyanophage S-RIM12 isolate W1_08_0910, complete genome 161938-161969 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349313 Cyanophage S-RIM12 isolate RW_06_0310, complete genome 161936-161967 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 HQ633071 Synechococcus phage S-SKS1 genomic sequence 27791-27822 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KJ019089 Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome 180706-180737 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 NC_015288 Prochlorococcus phage Syn1, complete genome 181688-181719 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349295 Cyanophage S-RIM44 isolate Sn_08_0709, complete genome 183465-183496 9 0.719
CP021971_5 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR 2812626-2812657 32 KX349292 Cyanophage S-RIM44 isolate Np_05_0604, complete genome 183494-183525 9 0.719
CP021971_5 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR 2812806-2812837 32 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 79743-79774 9 0.719
CP021971_2 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT 1095777-1095808 32 NZ_CP033582 Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence 473925-473956 10 0.688
CP021971_5 5.1|2812146|32|CP021971|CRISPRCasFinder 2812146-2812177 32 MN692982 Marine virus AFVG_117M55, complete genome 26351-26382 10 0.688
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP033943 Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence 58127-58162 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP013780 Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence 70615-70650 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP038925 Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence 22629-22664 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP038813 Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence 22629-22664 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP038915 Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence 22629-22664 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP039207 Piscirickettsia salmonis strain Psal-182 plasmid unnamed3, complete sequence 37535-37570 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP038934 Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence 22629-22664 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP038974 Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence 36054-36089 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP038888 Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence 22629-22664 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP039216 Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence 37266-37301 10 0.722
CP021971_5 5.18|2812382|36|CP021971|CRT 2812382-2812417 36 NZ_CP038878 Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence 22629-22664 10 0.722

1. spacer 5.7|2812506|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP050151 (Hafnia alvei strain A23BA plasmid pA23BA, complete sequence) position: , mismatch: 0, identity: 1.0 

gtgagagcgcgaagcttgagcgcacgaacgac	CRISPR spacer
gtgagagcgcgaagcttgagcgcacgaacgac	Protospacer
********************************

2. spacer 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP015380 (Hafnia alvei strain HUMV-5920 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938 

gtcgtcgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
gtcgtcgtgtgtcggaacggcgcacgccttcg	Protospacer
****************************.*.*

3. spacer 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP050151 (Hafnia alvei strain A23BA plasmid pA23BA, complete sequence) position: , mismatch: 2, identity: 0.938 

gtcgtcgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
gtcgtcgtgtgtcggaacggcgcacgccttcg	Protospacer
****************************.*.*

4. spacer 4.1|2752535|32|CP021971|CRISPRCasFinder,CRT matches to NZ_CP015380 (Hafnia alvei strain HUMV-5920 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906 

ggtgtgttgcgttgtgtttccataccgactat	CRISPR spacer
agtgtgttgcgttgtgtttccatacagcctat	Protospacer
.************************ * ****

5. spacer 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP050151 (Hafnia alvei strain A23BA plasmid pA23BA, complete sequence) position: , mismatch: 3, identity: 0.906 

gtcgtcgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
gtcgtcgtgtgtcggaacgacgcacgccttcg	Protospacer
*******************.********.*.*

6. spacer 5.20|2812502|36|CP021971|CRT matches to NZ_CP050151 (Hafnia alvei strain A23BA plasmid pA23BA, complete sequence) position: , mismatch: 3, identity: 0.917 

taacgtgagagcgcgaagcttgagcgcacgaacgac	CRISPR spacer
cacggtgagagcgcgaagcttgagcgcacgaacgac	Protospacer
.*  ********************************

7. spacer 5.25|2812802|36|CP021971|CRT matches to NZ_CP050151 (Hafnia alvei strain A23BA plasmid pA23BA, complete sequence) position: , mismatch: 5, identity: 0.861 

gaacgtcgtcgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
gtcagtcgtcgtgtgtcggaacggcgcacgccttcg	Protospacer
*   ****************************.*.*

8. spacer 5.25|2812802|36|CP021971|CRT matches to NZ_CP015380 (Hafnia alvei strain HUMV-5920 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.861 

gaacgtcgtcgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
gtcagtcgtcgtgtgtcggaacggcgcacgccttcg	Protospacer
*   ****************************.*.*

9. spacer 2.7|1095837|32|CP021971|PILER-CR,CRISPRCasFinder,CRT matches to MT521992 (Rhodococcus phage NiceHouse, complete genome) position: , mismatch: 6, identity: 0.812 

---accgagaccacccattgcaccgaaaccatcac	CRISPR spacer
gataccg---ccacccattgcaccgaatccaccag	Protospacer
   ****   ***************** ***.**

10. spacer 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812 

gtcgt-cgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
-tggtgcggatgtcagaacggcccacgcccttg	Protospacer
 * ** ** .****.******* **********

11. spacer 5.25|2812802|36|CP021971|CRT matches to NZ_CP050151 (Hafnia alvei strain A23BA plasmid pA23BA, complete sequence) position: , mismatch: 6, identity: 0.833 

gaacgtcgtcgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
gtcagtcgtcgtgtgtcggaacgacgcacgccttcg	Protospacer
*   *******************.********.*.*

12. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP038925 (Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

13. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP038813 (Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

14. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP033943 (Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

15. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP013780 (Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

16. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP038915 (Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

17. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP039207 (Piscirickettsia salmonis strain Psal-182 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

18. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP038934 (Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

19. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP038974 (Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

20. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP038888 (Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

21. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP039216 (Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

22. spacer 5.5|2812386|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP038878 (Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781 

atgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
taaaagaaggcagagcaagcgcatattaatgt	Protospacer
  .**.******************.*****.

23. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP026284 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-5873, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gacacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

24. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_KX523900 (Klebsiella pneumoniae strain Kpn-04963/15 plasmid pOXA-48_4963, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

25. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_KX009507 (Escherichia coli strain 06K2206 plasmid LM6771, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

26. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NC_019368 (Enterobacter cloacae plasmid pEl1573, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

27. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_KM877517 (Enterobacter cloacae strain CRE623 plasmid pIMP-HB623, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

28. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to AP018454 (Klebsiella pneumoniae plasmid pMRY13-133KPN_2 DNA, complete genome, strain: MRY13-133) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

29. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to AP018455 (Klebsiella aerogenes plasmid pMRY13-134EAE_1 DNA, complete genome, strain: MRY13-134) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

30. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to CP048042 (Serratia liquefaciens strain JL02 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

31. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP026156 (Klebsiella pneumoniae strain B12(AN) plasmid pB12AN_1, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

32. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NC_004464 (Citrobacter freundii plasmid pCTX-M3, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

33. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP035217 (Klebsiella michiganensis strain M82255 plasmid pKOCBH-C, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

34. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP042501 (Enterobacter sp. E76 plasmid pE76_002, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

35. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP048339 (Escherichia coli strain 142 plasmid p142_B, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

36. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP042509 (Leclercia adecarboxylata strain E1 plasmid pE1_004, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

37. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556214 (Escherichia coli CEX24 plasmid pCEX24 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

38. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556215 (Escherichia coli CEX25 plasmid pCEX25 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

39. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556216 (Escherichia coli CEX14 plasmid pCEX14 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

40. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556217 (Escherichia coli CEX3 plasmid pCEX3 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

41. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556218 (Enterobacter cloacae CEX5 plasmid pCEX5 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

42. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556219 (Enterobacter cloacae CEX6 plasmid pCEX6 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

43. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556220 (Enterobacter cloacae CEX4 plasmid pCEX4 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

44. spacer 5.13|2812866|32|CP021971|CRISPRCasFinder,PILER-CR matches to LC556221 (Klebsiella pneumoniae CEX18 plasmid pCEX18 DNA, complete sequence) position: , mismatch: 7, identity: 0.781 

gaaacgccgattttaggatcgcaccacgtatt	CRISPR spacer
gatacgccggttttaggatcgcaatgtgtctt	Protospacer
** ******.************* ...** **

45. spacer 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039899 (Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence) position: , mismatch: 8, identity: 0.75 

ttgccgtcgagctgcatcccctcgccttgact	CRISPR spacer
tggccgtcgtgctgcatcccctcaccgatgat	Protospacer
* ******* *************.**   . *

46. spacer 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75 

ttgccgtcgagctgcatcccctcgccttgact	CRISPR spacer
ttgccgtcgggctgcagcccctcggcgagttg	Protospacer
*********.****** ******* *  * .

47. spacer 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039890 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence) position: , mismatch: 8, identity: 0.75 

ttgccgtcgagctgcatcccctcgccttgact	CRISPR spacer
tggccgtcgtgctgcatcccctcaccgatgat	Protospacer
* ******* *************.**   . *

48. spacer 4.2|2752595|32|CP021971|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008935 (Geobacillus stearothermophilus 10 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75 

ttcgttcaactggtgaaactcaaatttacact	CRISPR spacer
ttcgttcaaccgttgaaactcaagggaaaacc	Protospacer
**********.* **********.   * **.

49. spacer 4.6|2752835|32|CP021971|CRISPRCasFinder,CRT,PILER-CR matches to MN694706 (Marine virus AFVG_250M574, complete genome) position: , mismatch: 8, identity: 0.75 

ataatactatcctcgttgtcattttcatcaga	CRISPR spacer
attgtttaatcctcgttgtcattatcattagt	Protospacer
** .* . *************** ****.**

50. spacer 5.1|2812146|32|CP021971|CRISPRCasFinder matches to AP014315 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C66, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75 

ttggtggcgcacaagcactggctgacgcattg	CRISPR spacer
gtgggctgacacaagcacaggctgaagcattg	Protospacer
 ***    .********* ****** ******

51. spacer 4.4|2752715|32|CP021971|CRISPRCasFinder,CRT,PILER-CR matches to NC_009930 (Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence) position: , mismatch: 9, identity: 0.719 

-----aatgattcagctcgagcaagcccccatccagc	CRISPR spacer
ccggcaa-----cagctagagcaagccctcatccaaa	Protospacer
     **     ***** **********.******.

52. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018472 (Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

53. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP023286 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

54. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018859 (Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

55. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018851 (Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

56. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018848 (Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

57. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018855 (Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

58. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018729 (Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

59. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018726 (Xanthomonas vesicatoria ATCC 35937 strain LMG911 plasmid pLMG911.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

60. spacer 5.2|2812206|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP018732 (Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggaatgcatgtaaacggcgtgacgattggcgc	CRISPR spacer
ccaacaacagtgaacggcgtgacgattagcgc	Protospacer
  **..   **.***************.****

61. spacer 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR matches to MG945819 (UNVERIFIED: Microviridae sp. isolate 5863-1801, complete genome) position: , mismatch: 9, identity: 0.719 

ttcttccgctgccgtatctgcatttgtgatcg	CRISPR spacer
aatcgtcgctgccgtatctgcattcctgattg	Protospacer
  .. .******************. ****.*

62. spacer 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 9, identity: 0.719 

ttcttccgctgccgtatctgcatttgtgatcg	CRISPR spacer
ttcatccgctgctgtatctgcattatcaggct	Protospacer
*** ********.***********  ... *

63. spacer 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR matches to MG945771 (UNVERIFIED: Microviridae sp. isolate 3823-1801, complete genome) position: , mismatch: 9, identity: 0.719 

ttcttccgctgccgtatctgcatttgtgatcg	CRISPR spacer
aatcgtcgctgccgtatctgcattcctgattg	Protospacer
  .. .******************. ****.*

64. spacer 5.4|2812326|32|CP021971|CRISPRCasFinder,PILER-CR matches to KT264776 (Gokushovirus WZ-2015a isolate 28Mky14, complete genome) position: , mismatch: 9, identity: 0.719 

ttcttccgctgccgtatctgcatttgtgatcg	CRISPR spacer
cgtcatcgctgccgtatctgcattcctgattg	Protospacer
. .. .******************. ****.*

65. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349297 (Cyanophage S-RIM44 isolate W2_10_0709, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

66. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349326 (Cyanophage S-RIM12 isolate WH_05_0310, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

67. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349327 (Cyanophage S-RIM12 isolate WH_07_0310, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

68. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KJ019069 (Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

69. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to NC_031900 (Synechococcus phage S-CAM4 isolate 0809SB33, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

70. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

71. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349308 (Cyanophage S-RIM12 isolate Np_15_0310, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

72. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349316 (Cyanophage S-RIM12 isolate RW_22_0110, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

73. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KU686202 (Synechococcus phage S-CAM4 isolate 1010NB23, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

74. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KU686200 (Synechococcus phage S-CAM4 isolate 0309CC44, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

75. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349315 (Cyanophage S-RIM12 isolate RW_14_0101, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

76. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KU594607 (Cyanophage S-RIM44 isolate W2_07_0710, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

77. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349317 (Cyanophage S-RIM12 isolate RW_25_0210, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

78. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349311 (Cyanophage S-RIM12 isolate RW_04_0310, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

79. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349323 (Cyanophage S-RIM12 isolate W1_08_0910, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

80. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349313 (Cyanophage S-RIM12 isolate RW_06_0310, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

81. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

82. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KJ019089 (Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

83. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to NC_015288 (Prochlorococcus phage Syn1, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

84. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349295 (Cyanophage S-RIM44 isolate Sn_08_0709, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

85. spacer 5.9|2812626|32|CP021971|CRISPRCasFinder,PILER-CR matches to KX349292 (Cyanophage S-RIM44 isolate Np_05_0604, complete genome) position: , mismatch: 9, identity: 0.719 

ggtttgggaaatagtaattccaccactggtga	CRISPR spacer
tgtctgggaaatagtaactccaccattccctg	Protospacer
 **.*************.*******.*  . .

86. spacer 5.12|2812806|32|CP021971|CRISPRCasFinder,PILER-CR matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

gtcgtcgtgtgtcggaacggcgcacgcccttg	CRISPR spacer
gcgccactgtgtcggagcggcggacgccctcg	Protospacer
*.  .  *********.***** *******.*

87. spacer 2.6|1095777|32|CP021971|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 10, identity: 0.688 

ttgccgtcgagctgcatcccctcgccttgact	CRISPR spacer
acgccgtcgaggtgcagcccctcgccggtcgc	Protospacer
 .********* **** *********     .

88. spacer 5.1|2812146|32|CP021971|CRISPRCasFinder matches to MN692982 (Marine virus AFVG_117M55, complete genome) position: , mismatch: 10, identity: 0.688 

ttggtggcgcacaagcactggctgacgcattg	CRISPR spacer
agtacaacgcacaagcactggtagacgcattc	Protospacer
   ....**************. ********

89. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP033943 (Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

90. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP013780 (Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

91. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP038925 (Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

92. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP038813 (Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

93. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP038915 (Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

94. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP039207 (Piscirickettsia salmonis strain Psal-182 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

95. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP038934 (Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

96. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP038974 (Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

97. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP038888 (Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

98. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP039216 (Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

99. spacer 5.18|2812382|36|CP021971|CRT matches to NZ_CP038878 (Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722 

taacatgaaaaaggcagagcaagcgcatgttaataa	CRISPR spacer
tctttaaaagaaggcagagcaagcgcatattaatgt	Protospacer
*  .  .**.******************.*****.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1582469 : 1594030 10 Escherichia_phage(62.5%) tRNA NA
DBSCAN-SWA_2 1764165 : 1797003 37 Escherichia_phage(41.94%) tail,plate,holin,capsid,head,integrase attL 1755600:1755614|attR 1805713:1805727
DBSCAN-SWA_3 2149708 : 2163608 13 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_4 3278370 : 3296627 18 Cronobacter_phage(33.33%) tRNA,tail,integrase attL 3282809:3282832|attR 3296671:3296694

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage