CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030062	Mannheimia varigena strain Teagasc 1 chromosome, complete genome	2 crisprs	cas3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	1	8	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030062_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030062_1

1717140-1717640

Orphan

Consensus_repeat	Method
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	CRISPRCasFinder
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	CRT
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	PILER-CR

7 spacers

The CRISPR arrays of CP030062_1

>merge|CP030062|1|1717140-1717640|CRISPRCasFinder,CRT,PILER-CR
ATTTTAAGTTACAGCTACGCGAAGGTAGCTGCGCTGTTTAACAATGCCAATAAACGCTTTAATCCTGGTTTCAACTCACAGCTACGCGAAGGTAGCTGCGCGTACTGCCTAAGCTATTCAATCCCTCTTTGATTGTTTCAACTCACAGCTACGCGAAGGTAGCTGCCCGCCGAGCCTCAGAAGCAACTAAGCAACGAGTGCGAGTTTCAACTCACAGCTACGCGAAGGTAGCTGCGACTAATCGAGTGGATACTAGATGGCACAAGGCTTGTTTCAACTCACAGCTACGCGAAGGTAGCTGCCGATAGGATTTTGGAGGAGTTTTTCCAAGATTTAGTTTCAACTCACAGCTACGCGAAGGTAGCTGCTTTACGCCCCTCTTTTTCTTCAAGTGCCGCAACTCGTTTCAACTCACAGCTACGCGAAGGTAGCTGCTTTTTATTTAGCTTTATGATTGCATAGCTTCATTGTTTCAACTCACAGCTACGCGAAGGTAGCTGC

>CP030062|1|1|1717140-1717640|CRISPRCasFinder
ATTTTAAGTTACAGCTACGCGAAGGTAGCTGC	GCTGTTTAACAATGCCAATAAACGCTTTAATCCTG
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	GCGTACTGCCTAAGCTATTCAATCCCTCTTTGATT
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	CCGCCGAGCCTCAGAAGCAACTAAGCAACGAGTGCGA
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	GACTAATCGAGTGGATACTAGATGGCACAAGGCTT
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	CGATAGGATTTTGGAGGAGTTTTTCCAAGATTTA
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	TTTACGCCCCTCTTTTTCTTCAAGTGCCGCAACTC
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	TTTTTATTTAGCTTTATGATTGCATAGCTTCATT
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC

>CP030062|1|1|1717140-1717640|CRT
ATTTTAAGTTACAGCTACGCGAAGGTAGCTGC	GCTGTTTAACAATGCCAATAAACGCTTTAATCCTG
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	GCGTACTGCCTAAGCTATTCAATCCCTCTTTGATT
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	CCGCCGAGCCTCAGAAGCAACTAAGCAACGAGTGCGA
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	GACTAATCGAGTGGATACTAGATGGCACAAGGCTT
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	CGATAGGATTTTGGAGGAGTTTTTCCAAGATTTA
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	TTTACGCCCCTCTTTTTCTTCAAGTGCCGCAACTC
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC	TTTTTATTTAGCTTTATGATTGCATAGCTTCATT
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC

>CP030062|1|1|1717141-1717640|PILER-CR
TTTTAAGTTACAGCTACGCGAAGGTAGCTGCG	CTGTTTAACAATGCCAATAAACGCTTTAATCCTGG
TTTCAACTCACAGCTACGCGAAGGTAGCTGCG	CGTACTGCCTAAGCTATTCAATCCCTCTTTGATTG
TTTCAACTCACAGCTACGCGAAGGTAGCTGCC	CGCCGAGCCTCAGAAGCAACTAAGCAACGAGTGCGAG
TTTCAACTCACAGCTACGCGAAGGTAGCTGCG	ACTAATCGAGTGGATACTAGATGGCACAAGGCTTG
TTTCAACTCACAGCTACGCGAAGGTAGCTGCC	GATAGGATTTTGGAGGAGTTTTTCCAAGATTTAG
TTTCAACTCACAGCTACGCGAAGGTAGCTGCT	TTACGCCCCTCTTTTTCTTCAAGTGCCGCAACTCG
TTTCAACTCACAGCTACGCGAAGGTAGCTGCT	TTTTATTTAGCTTTATGATTGCATAGCTTCATTG
TTTCAACTCACAGCTACGCGAAGGTAGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
CP030062.1\|AWW35277.1\|1711865_1712498_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225500
CP030062.1\|AWW34851.1\|1726030_1727797_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|236870
CP030062.1\|AWW34843.1\|1713915_1715418_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
CP030062.1\|AWW34849.1\|1723617_1724247_-\|lysogenization-regulator-HflD	unknown	unknown	gnl\|CDD\|234690
CP030062.1\|AWW34847.1\|1721388_1722150_-\|DeoR/GlpR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
CP030062.1\|AWW34845.1\|1717916_1720349_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
CP030062.1\|AWW34840.1\|1710511_1710931_+\|DNA-binding-protein-H-NS-like-protein	unknown	unknown	gnl\|CDD\|182380
CP030062.1\|AWW34839.1\|1708540_1710079_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|224671
CP030062.1\|AWW34844.1\|1715567_1717043_-\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
CP030062.1\|AWW34838.1\|1707553_1708306_-\|NADP-dependent-3-hydroxy-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|187604
CP030062.1\|AWW34853.1\|1732068_1733937_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
CP030062.1\|AWW34854.1\|1733946_1734807_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
CP030062.1\|AWW34841.1\|1711002_1711839_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
CP030062.1\|AWW34848.1\|1722216_1723584_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
CP030062.1\|AWW34837.1\|1706309_1707500_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
CP030062.1\|AWW34850.1\|1724363_1726031_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP030062.1\|AWW34836.1\|1705497_1706310_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|161792
CP030062.1\|AWW34852.1\|1727899_1732003_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
CP030062.1\|AWW34846.1\|1720520_1721396_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237229
CP030062.1\|AWW34842.1\|1712760_1713834_+\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678

Protein	Function_ID	Function_description	E-value
CP030062.1\|AWW35277.1\|1711865_1712498_-\|hypothetical-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.23081e-77
CP030062.1\|AWW34851.1\|1726030_1727797_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP030062.1\|AWW34843.1\|1713915_1715418_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
CP030062.1\|AWW34849.1\|1723617_1724247_-\|lysogenization-regulator-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	1.21106e-99
CP030062.1\|AWW34847.1\|1721388_1722150_-\|DeoR/GlpR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	6.46621e-118
CP030062.1\|AWW34845.1\|1717916_1720349_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
CP030062.1\|AWW34840.1\|1710511_1710931_+\|DNA-binding-protein-H-NS-like-protein	gnl\|CDD\|182380	PRK10328, PRK10328, DNA-binding protein StpA.	3.22105e-33
CP030062.1\|AWW34839.1\|1708540_1710079_-\|Na+/H+-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	1.75107e-94
CP030062.1\|AWW34844.1\|1715567_1717043_-\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
CP030062.1\|AWW34838.1\|1707553_1708306_-\|NADP-dependent-3-hydroxy-acid-dehydrogenase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.51178e-147
CP030062.1\|AWW34853.1\|1732068_1733937_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	1.89e-159
CP030062.1\|AWW34854.1\|1733946_1734807_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	1.28053e-87
CP030062.1\|AWW34841.1\|1711002_1711839_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	2.06639e-172
CP030062.1\|AWW34848.1\|1722216_1723584_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
CP030062.1\|AWW34837.1\|1706309_1707500_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
CP030062.1\|AWW34850.1\|1724363_1726031_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP030062.1\|AWW34836.1\|1705497_1706310_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|161792	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. [Amino acid biosynthesis, Aromatic amino acid family].	8.52934e-126
CP030062.1\|AWW34852.1\|1727899_1732003_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP030062.1\|AWW34846.1\|1720520_1721396_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237229	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase.	1.94295e-170
CP030062.1\|AWW34842.1\|1712760_1713834_+\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0

>CP030062.1|AWW34844.1|1715567_1717043_-|ribonuclease-G
MSSTELLVNVTPSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFVVKDISELVREGQDIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESETERERLKALVEPYCDELGGFIVRTAAEEAHEESLKQDVAFLKRLWRKVLERKTKYPAKSMLYGELALAQRVLRDFIGTHINAVWIDSKITCEQVKEFLTEFMPELTNSVSLYTGAKTLFDAYGVEESIQKALNKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEATQVIAHQLQLRNLGGIIIIDFIDMQEEEHRNLVLQSLQNALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCPECQGRGTVKTVETVSYEIMREIVRVHHLFKAEKMHVYASKEVADYLINEESHALLAELQAFIGAKIEIKVEPYYHQEQFDVVVM
>CP030062.1|AWW34843.1|1713915_1715418_-|lysine--tRNA-ligase
MSAVENQELDLNGKMLARREKLTKIREQGNAFPNTFRRNALAKDLHAQYDEVEGEALKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLAESVYEEKVSLWDLGDIIGVEGTLFKTKTGELTVRCSEVQLLTKALRPLPDKHHGLTDLETRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFVTHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGEYVFDFGKPFERITMHDAIVKYGNGIKREDLDSFEKSVEIAKGLGIEIQKSWGLGSVINAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFVVALEHGLPPTAGEGLGIDRLAMIFANAPSIRDVILFPAMRQK
>CP030062.1|AWW34842.1|1712760_1713834_+|homoserine-O-acetyltransferase
MAQHITLFRETPLSLSLGGELSPINVAYQTYGVLNADKSNAVLICHALTGDAEPYYDTATEKGWWQDFIGKGLAFDTEKYFFICSNVLGGCKGTTGPASINPKTNKPYGSQFPIITVQDIVNVQKALIDYLEIPTLHAVIGGSFGGMQATQWGISYPDKVRNIINLCSSLTLSAEAIGFNHVMRQAIINDPYFNNGDYYDGIAPDNGLKIARMLGMLTYRTDMQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLYDPALGYENEEAALKRIKANYVFITVTSDQLFKQVDVYKSKQKLEQAGVNLDFHEFHSDFGHDAFLVDYDFFEPMIRKGLEK
>CP030062.1|AWW35277.1|1711865_1712498_-|hypothetical-protein
MVIKVFKCLSVLVLLLILGLLAVDAITSYIIRDKIYTDVKKLPHREYAVVLGTAKFYSKDVINRYYKYRLDAAKQLVQSEKVDLLLLSGDNKTPYYNEPKTMTNDLLKMGVPQRQIKQDYAGYTTFDSIIRATEVYKLPPFTIVSQKFHCERALFIAKFKNIDAICYAAKYPEGAYQVRLREILARAVMVFNLLMGKTPETLEDIPSKEK
>CP030062.1|AWW34841.1|1711002_1711839_+|formyltetrahydrofolate-deformylase
MIEHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVDNETKRFFMRTELNGIFNDNTLLADLEFTLPEGSIYKLLPKQRKRIIILVTKEAHCLGDLLMKNYYGGLDVEIAAVIGNHDTLKELAERFDVPFHLVSHENLTRVEHDKLLADKIDEYAPDYIVLAKYMRVLNPEFVARYPNRVINIHHSFLPAFIGAKPYQRAYERGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLSDKVFVYKNKTIIL
>CP030062.1|AWW34840.1|1710511_1710931_+|DNA-binding-protein-H-NS-like-protein
MSDLKSLLNIRTLRALAKDLALEQLRTIAEKLDTIIAEKEEEIRKEEQERAKQLESLNKYTEMLKQDGLSIDELAQLLADKVIKGRKTAKARKTVAPRPAKYKFVDAEGNEKTWTGQGRTPKALQKALDKGKKLEDFAI
>CP030062.1|AWW34839.1|1708540_1710079_-|Na+/H+-antiporter
MNLVDYSTSLWSVLPALIALILAIVTRKVIVSLSIGIVFGAFMLTNSSFLDALTYIKNSVVSLVYKGSEEGLNTNNVNIILFLILLGVLTSLLSISGSNQAFANWAQKRIKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFHISRAKLAYILDSTAAPMCVLMPISSWGAYIITLIAGLLATHSITDYSPLGAFMTMSAMNFYAIFAMIMVFFVAYFSFDIGPMTRFERQAEHLAEVEEETIEVKGRMRNLVFPIIALIVVTVAMMIKTGADALAESNTPFSILGAFENTTVGISLVAGGIAALIVATICIMASGHISLKNYVRAYGLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVGEHIAAGFLPAILFVLAAFMAFSTGTSWGTFGIMLPIGAAMAVHSEPALIIPCLSAVMAGAVCGDHCSPVSDTTILSSTGAQCNHMDHVISQLPYALLVAAASIVGYLVVGFTQSALLGFVTTSAVMAALILIFKAKKQKK
>CP030062.1|AWW34838.1|1707553_1708306_-|NADP-dependent-3-hydroxy-acid-dehydrogenase
MKTALVTGATAGFGLAICKLLIQSGYKVIGTGRRAERLAELHLQFGEHFRPLAFDIQDPQAVQTALESLPQDWQQIDLLVNNAGLALGLEPAHKVDLNDWYQMIDTNIKGLVTMTRLVLPQMVERNSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSLNLRSDLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKVAKIYENVEFVRPEDVANIVLWLNQQPEHVNINRVEIMPVAQSSAALNVARNL
>CP030062.1|AWW34837.1|1706309_1707500_-|tryptophan-synthase-subunit-beta
MSDTLLNPYFGEFGGMYVPEILVPVLKQLEQAFVEAQQDPEFQAEFADLLKNYAGRPTALTLCRNLTKGTKTKLYLKREDLLHGGAHKTNQVLGQILLAKRMGKTRIIAETGAGQHGVATSLACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPVEKGSCSLKDACCEAMRDWAANYETTHYLIGTAAGPHPFPTMVREFQKMIGEETKRQILEKEDRLPDAVIAAVGGGSNAIGMFADFIEESSVKLIGVEPAGKGIETGEHGAPLKHGTTGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRADYVSITDPEALDAFQALAKNEGIIPALESSHALAYALKLIAQNPDKEQLLVVNLSGRGDKDIFTVDKILNGGN
>CP030062.1|AWW34836.1|1705497_1706310_-|tryptophan-synthase-subunit-alpha
MSRFDTLFTALKAKNEGAFVPFVTLCDPDFDRSFEIIETMIVNGADALELGFPFSDPLLDGPVIQAANKRALDAGYSTDACFELIGKIRAKYPDIPIGLLLCANLIFVPTAEVFFKRCKENGVDAVLIADLPLLAAEEFVPTAKKHGIQPVFICPPNADQNTIERIAKLTEGYTYLVSRAGVTSAENQAHASNLDNLVEGLKRSNSAPILQGFGIAKPEQVKEALALGCDGAISGSAIVKIIERNLANQANLLKELGEFVKAMKEASRRE
>CP030062.1|AWW34845.1|1717916_1720349_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSEQTQPTSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAVIGDTQKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKEEHFKYEGGIKAYVEYLNEGKTHIHNTPFYLSTEKDGIGVEISLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVESSMNEALADYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLYVSEDAPALSGVALENLISQYNNVQKLIERLNRRYPTLLLNELIYSKPLSVDFAKNEANMTAWGEEFVVKLMEKEVGGSFYRASVEFNAERQIYEPEIVVTTHGMDTTYRIDYNFISSNEYARIVALGNELNDLLTDSAYVVRGERRQEISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDFIETNALYAQIDV
>CP030062.1|AWW34846.1|1720520_1721396_-|4-hydroxybenzoate-octaprenyltransferase
MNKGSFFSKQKWTAYAQLMRFDKPIGTLLLLHPTLWALFVAADGMPPVSILLIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKIIFAVLLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAFGAVSEALPFECWLLFLANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIALLQFITLILLTLVGIVQEYNIGYFIVLALSATLFIYQCWLTKKRERSECFKAFLNNHYFGLGVFIAILVGIYF
>CP030062.1|AWW34847.1|1721388_1722150_-|DeoR/GlpR-family-transcriptional-regulator
MKQANRHKRIIDLVNLLGYVSTEELVAQMNVSPQTIRRDLNEMAENNLIRRHHGGAAAPSNTENSDYTHRKQFFSQEKNAIAQQVAKLIPNGASLFLDIGTTSEAVALALLSHKNLIVVTNNLNAAHILMKNPDCQITVAGGHLRSDGGLIGEETVRFINQFRLDFGILGISAVDLDGSMLDYDYHEVQVKRALMECSRQVLLVTDHSKFSRNAIVRLGNVKEVNYLFTDTDLPLELQTHLSQSDVIVKICNE
>CP030062.1|AWW34848.1|1722216_1723584_-|adenylosuccinate-lyase
MELTALTALSPIDGRYQDKVSSLRPVFSEFGLLKFRVEAEVRWLQKLASHAQIKEVPAFSEKANDYLNQIVANFSLEDANRIKTIERTTNHDVKAVEYFLKEKCEALPELQAVSEFIHFACTSEDINNTSHALMLKTARAEVLLPEWKKLIDAIVELAKRYQSIPLLSRTHGQPASPTTIGKEMANVAYRLQRQYKQLENLEILGKINGAVGNYNAHLSAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTIIIDFDRDMWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQRDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDEAAMREFIEKLDIPEHEKARLKEMTPATYIGYAVELVDKL
>CP030062.1|AWW34849.1|1723617_1724247_-|lysogenization-regulator-HflD
MADYHDITIAYAGVCQAANLVQQFAHKGTADRDAFRQSIRSLLVTQPESTLSVFGDDLSHIQMGLETALSQTGGGNGKLDTEVGRYWISLIALSQKLDKNPEAKQQLAQRLQQIERQLPLYEGDVLADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVRPDIQHKIRASLLAGIRAAILWQQVGGSRWQFLFSRKKIFNQAQQLYRQI
>CP030062.1|AWW34850.1|1724363_1726031_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MKSLFPFFSLYQTHFGRLLLGIVLAILGLAASIGLLSLSGWFLAASFLAANAIIFNFFYPAGGVRGLAIFRTASRYFEKLVTHDATFRVLANLRVTVFKKLIPLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLISPFVSAVMIITFMAIGLSFVSVPLMLIICGTLLALLLIIPTVFYRLGLKLGKKAVQSRANYRSQFIEWVQLNAEFLLFGNLRQAAEKLQHTEREWLNAQGQESRLSGLSSGLLMLSNGILTCVVIYLASTAINVPTAQYPEALIALVVFCVMASNEILAPIGIAFLHLGQVITAAERINEITEQQPNVQFNGSAKWQNLSQNQPLVRFENVNFAYLNGEQQVLNNLSFEVLKGQKVAILGKTGSGKSTIFQLLNRNYDPASGQIWLNNCKIEDFPEQTLRSKLVTLSQRVHIFSQTLKDNLLMGNATATDEQMIETVQKVGLGYLLETEGLKLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLDRETEQQILNLILTHCAERTLLMITHRQSGLGKFDVVYRMDSGRLLN
>CP030062.1|AWW34851.1|1726030_1727797_-|thiol-reductant-ABC-exporter-subunit-CydD
MEKQRQRELQKWLKSQQKVIKKYMHLNVLLGLIGSLAMIAQMWLLATMLHKMIVQKQSPSMFLTEIGLLFLCFAIRACVIFMRERVGFKAGQTLRLHLREQILAKMEAVGPMTIQQKPAGSWAALMLEQVENLHNFYARYLPQQFLSLLVPLVILCFVFPTNWAAGLILLATMPLLPLFMILAGLKAVEANQRNIGILSRISGQFLDKLKGLETIRLFGQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTSVSIAVMAVYFGFIFLGELDFGYYGTGVSLFIGFFCLMLAPEFYQPMRELGVFYHDKAAAIGAADSIEKFLNEEVKTQRSHLQKSMENQPLVIEANACVILSPQGKALTQPLNFKLNANQHIALVGQSGAGKTSLMNMLLGFLPYEGSVKINGVELRELNLTEWRAKLAWVGQNPQLMRGSLKENILLGNATATEAEIAEALRLSKADEFVSRLGLEHQVQDSNIGISGGQAQRIAIARALLRRYELLLLDEPTASLDMESEQQVLEALHHLSREQTTLMITHRVEDLAKCDEIWVMKQGQIIQQGSFAELEYTGFFAELLRNELVHQGEI
>CP030062.1|AWW34852.1|1727899_1732003_-|translocation/assembly-module-TamB
MMNEKKEIIDSQEIQAQQEKTHKKLKSKWRFLKWGICIFSILLLVLILFLCTGFGQRKTVQWVEQFVEPLQIGKVEGSIQDGLQLFDTQFITDGVNVQVGKADLHIDFNCLIKYEVCLNHFNVKDTKVVIDTRKLPPSQEKEDNTPFTELNLPLGISAKNITLENIDVSVDDMDIHLNHFTTSISGKGREVIVNPTTLDGLKLLLALKVEEELELQAVDSDAENAKVAVTRNPANAQEALDQVVQEAVEKTAEKVVEEFHQLQGKTIAEAEQQPHNKVDWAEIKAQLEQPILNKDIRLSLPLDLTIEQIDIANVSVAQKAQDEKGNLVEPISLINVNALQLQAQAKDELVTLQRLDFKSDQGDLTAAGILSLKDNYPLNWQLEGVEVKDAKVKLPFSHIDATLSGELYNKTMLNVKTEGAIKATLDGHIELATPKVPFDLMLKSESAKYPFAPQAGDDVLTLENIDIHLNGSPLAYNLAAKVSAKGMGIPLSAADLKGNGELTHFNIHDLLLNTLEGNAQLAGLIDWTEGVEWNSRFKLNNINTKALVPDWAAVLSGSLSTQGYAGRGNTGSDWKADVSNIDIKGSLHKKNLQLTGSLNANNQQLLDVPGLSLVYGENKIDLKGLLGEKSDFYADIKAPNLQGLVPNLKAGINGNVKLSGKLAEPNVDLDLVASNVSYEQFKLQHLTAKGKITTEQTIQGDVELGLRQFAYNDIKVESATLLAKGNEANHSLKLTSKGNPAGADLQISGKFDRLQQIWEGQLSQVAIQSTEFGRFQTDKAVNVKYDNKAINANVSAHCWHNPKVHLCFPTAFNAGQEGKVPFDIHNFNLAVLQDYLDNTSQISGIVNAKGDAAWFKNKQPQVNLDLTSNSIKFVQKMGGGKTFPLTVSPLKINLKMSDNNLALKSNLRVENNGTLTTDIVMRDLNNARTLSGNINIDQLTLKLIHPLLERGDVVDGRINARLTVSGQATSPLLHGTLNLTGLKARSVTMPFDVTGGNLAMNFHGATSTLNGKLQTKESELRLEGDADWRNINAWKTRVHAQANRFRVDIPNLARVEISPDIQVVATSTLLTLSGNIDVPWARIEVEQLPEQAVSVSGDEVIMDGSARNKVPFNQRNIPTQTAGGMAIDADIKINIGNDVKLKAYGLNSNLNGLLSVRQGKQGLGLYGQVRLDEGRFAAYGQDLLIRKGNISFAGSPSQPYLDIEAVRNPDAMEDPTITAGVRVTGLADAPNVKVFSDPAMSQNEALSYILTGRSLESSGDAGSSNAVAAALLSMSLSKSSKLVGDVGSAFGLKDLSVSTAGIGDNTKVEFSASLSPRFRVKYGVGVFAPLTELTLRYNLTPRLYLQWVSNVNQAVDLMYRFQFDKLF
>CP030062.1|AWW34853.1|1732068_1733937_-|outer-membrane-protein-assembly-factor
MKTKLHFLTICCLVAFASMAQAEQPQTNEQAQNNQQDRITDVDQERIGELEDTLSYDLDDEEKLEALVDLEVKGIHDKEAKKNVDLYLAQISNEYADGSERHQYLVQTTVDKALRALGYYNSQYQFVQLPRSGKKPLLVLNVELDKETVKIDETDIVLQGEAKNDEDFMALIKKAPKQGSRLNHKIYENFKGNIESNAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYDSGIRYRYGQINFVDSQIKEEYLRNILKINSGEHYFADDLSNLTQDYLSSNWFSSVMVEPHLNEQDKTVDLNVLFQPKKKNEVEIGIGYETEVGPRLQFNWKKPWRNKRGHSIDTRTYISAPEQRFEFGYNIPLKKDPLHYYYQISGTVENEDQKDTKSTAASFSLQRFWTRTTGWSFSAGVRARYDSFTQANDKFKTLLVYPTASLNRTRTDGKPYPLWGDSQKLTVNWGSKIFGSDVNFYSYKASTSFVRTYAGNHRFYLRAELGYLKANQFERIPPALRFFAGGDMSVRGFGYKDISPRDPANGKRVGGSHLATGTLEYQYQVYPNWWGAAFYDVGLAANKFETKQLHHGTGLGVRWASPIGAIKFDVGMPVKSPDNKRGFQIYIGLGSDI
>CP030062.1|AWW34854.1|1733946_1734807_-|divergent-polysaccharide-deacetylase-family-protein
MLKQIYKRLNFTTFLQITLILQLFLLFAPLAQAAKIAIVIDDVGYRVKEDREILSLPKEVSVAIIPDAPYATERARESYAQKRDILIHLPMEPKSRQFIEKNSIKIGDGEEKIRKLIGDSRGQVPYAIGLNNHTGSGATADVATMQPLMKVLKEQSLFFLDSKTIGNSIAAKTAREFGIPTLERNIFLDDSDELADVKKQFSQSIQYARRNGVAVVIGHPRKNTIAILKQHLATLPADIELIGIGTLWRNEKVVPEKPLIMLFEQEPALSSIPPYESIPLLRGIPR

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Crispr_ID: CP030062_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030062_2

1878767-1879935

TypeI

Consensus_repeat	Method
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	PILER-CR
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CRISPRCasFinder
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CRT

17 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of CP030062_2

>merge|CP030062|2|1878767-1879935|PILER-CR,CRISPRCasFinder,CRT
GTTTCAACTCACAGCCACGCGAACGTGGCTGCTCACAGACTGAAAATCACGCTTTTGAGAAAATAAGTTTCAACTCACAGCCACGCGAACGTGGCTGCCACCTTGAAAAGTAACCATAAATTTCAAGACGGCTTGTTTCAACTCACAGCCACGCGAACGTGGCTGCGCCCCTAATTCGTCCGTTGAACCGCTATTAAGTGGTTTCAACTCACAGCCACGCGAACGTGGCTGCTTATGTTGAGGTGGGAACAACAAAATCATTGCGAGTTTCAACTCACAGCCACGCGAACGTGGCTGCACATAGAGGGGTAGTAGTTGATAATAAAGACCCTGTTTCAACTCACAGCCACGCGAACGTGGCTGCGTATTATCTGTTTGAATTACTTGAAAATATTGAGGTTTCAACTCACAGCCACGCGAACGTGGCTGCTTATTTACGCCATCGACAGCTAAAATCTTTTTACGGTTTCAACTCACAGCCACGCGAACGTGGCTGCAGCTTATACTAAAGATATTAATTCAGATAAAGTCGTTTCAACTCACAGCCACGCGAACGTGGCTGCTGGTGGCAACCTCAAGCCAATTTGCTCATTACCTAGTTTCAACTCACAGCCACGCGAACGTGGCTGCAAGAACTCTGGTATATTTTCTGGTTTATTGTAATGTTTGTTTCAACTCACAGCCACGCGAACGTGGCTGCGTGTAGGTTCTCTGCTCCATCTTATTCATCGCGAGTTTCAACTCACAGCCACGCGAACGTGGCTGCAAATTTCATTTTTCGTCATTCGAGGGGGAGAAAATGGTTTCAACTCACAGCCACGCGAACGTGGCTGCCTCAACGCTCATAACTTTCTACTCCTCTTGTTTGTGTTTCAACTCACAGCCACGCGAACGTGGCTGCCAATTTATATCAATACAAAAAAGGCTTAAGCGATCCGTTTCAACTCACAGCCACGCGAACGTGGCTGCTGCCGCCAAACGCAATGCTTCAGCATACGTTTGTGGTTTCAACTCACAGCCACGCGAACGTGGCTGCGCTGTTTTGGTGATTAACATTGAACAGGTAGACAGTTTCAACTCACAGCCACGCGAACGTGGCTGCTTAGGTAGTTTGCCTACATTGGACGGCTCGAAGCTGTTTCAACTCACAGCCACGCGAACGTGGCTGC

>CP030062|2|2|1878767-1879935|PILER-CR
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TCACAGACTGAAAATCACGCTTTTGAGAAAATAA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CACCTTGAAAAGTAACCATAAATTTCAAGACGGCTT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GCCCCTAATTCGTCCGTTGAACCGCTATTAAGTG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTATGTTGAGGTGGGAACAACAAAATCATTGCGA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	ACATAGAGGGGTAGTAGTTGATAATAAAGACCCT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GTATTATCTGTTTGAATTACTTGAAAATATTGAG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTATTTACGCCATCGACAGCTAAAATCTTTTTACG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AGCTTATACTAAAGATATTAATTCAGATAAAGTC
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TGGTGGCAACCTCAAGCCAATTTGCTCATTACCTA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AAGAACTCTGGTATATTTTCTGGTTTATTGTAATGTTT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GTGTAGGTTCTCTGCTCCATCTTATTCATCGCGA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AAATTTCATTTTTCGTCATTCGAGGGGGAGAAAATG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CTCAACGCTCATAACTTTCTACTCCTCTTGTTTGT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CAATTTATATCAATACAAAAAAGGCTTAAGCGATCC
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TGCCGCCAAACGCAATGCTTCAGCATACGTTTGTG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GCTGTTTTGGTGATTAACATTGAACAGGTAGACA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTAGGTAGTTTGCCTACATTGGACGGCTCGAAGCT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC

>CP030062|2|2|1878767-1879935|CRISPRCasFinder
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TCACAGACTGAAAATCACGCTTTTGAGAAAATAA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CACCTTGAAAAGTAACCATAAATTTCAAGACGGCTT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GCCCCTAATTCGTCCGTTGAACCGCTATTAAGTG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTATGTTGAGGTGGGAACAACAAAATCATTGCGA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	ACATAGAGGGGTAGTAGTTGATAATAAAGACCCT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GTATTATCTGTTTGAATTACTTGAAAATATTGAG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTATTTACGCCATCGACAGCTAAAATCTTTTTACG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AGCTTATACTAAAGATATTAATTCAGATAAAGTC
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TGGTGGCAACCTCAAGCCAATTTGCTCATTACCTA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AAGAACTCTGGTATATTTTCTGGTTTATTGTAATGTTT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GTGTAGGTTCTCTGCTCCATCTTATTCATCGCGA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AAATTTCATTTTTCGTCATTCGAGGGGGAGAAAATG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CTCAACGCTCATAACTTTCTACTCCTCTTGTTTGT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CAATTTATATCAATACAAAAAAGGCTTAAGCGATCC
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TGCCGCCAAACGCAATGCTTCAGCATACGTTTGTG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GCTGTTTTGGTGATTAACATTGAACAGGTAGACA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTAGGTAGTTTGCCTACATTGGACGGCTCGAAGCT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC

>CP030062|2|2|1878767-1879935|CRT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TCACAGACTGAAAATCACGCTTTTGAGAAAATAA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CACCTTGAAAAGTAACCATAAATTTCAAGACGGCTT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GCCCCTAATTCGTCCGTTGAACCGCTATTAAGTG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTATGTTGAGGTGGGAACAACAAAATCATTGCGA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	ACATAGAGGGGTAGTAGTTGATAATAAAGACCCT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GTATTATCTGTTTGAATTACTTGAAAATATTGAG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTATTTACGCCATCGACAGCTAAAATCTTTTTACG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AGCTTATACTAAAGATATTAATTCAGATAAAGTC
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TGGTGGCAACCTCAAGCCAATTTGCTCATTACCTA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AAGAACTCTGGTATATTTTCTGGTTTATTGTAATGTTT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GTGTAGGTTCTCTGCTCCATCTTATTCATCGCGA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	AAATTTCATTTTTCGTCATTCGAGGGGGAGAAAATG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CTCAACGCTCATAACTTTCTACTCCTCTTGTTTGT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	CAATTTATATCAATACAAAAAAGGCTTAAGCGATCC
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TGCCGCCAAACGCAATGCTTCAGCATACGTTTGTG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	GCTGTTTTGGTGATTAACATTGAACAGGTAGACA
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TTAGGTAGTTTGCCTACATTGGACGGCTCGAAGCT
GTTTCAACTCACAGCCACGCGAACGTGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
CP030062.1\|AWW34973.1\|1870612_1872118_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
CP030062.1\|AWW34976.1\|1873945_1874593_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
CP030062.1\|AWW34981.1\|1881689_1881881_-\|hypothetical-protein	unknown	unknown	unknown
CP030062.1\|AWW34978.1\|1876196_1878599_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
CP030062.1\|AWW34986.1\|1886291_1888721_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP030062.1\|AWW34979.1\|1880133_1880427_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP030062.1\|AWW34969.1\|1863759_1867284_-\|exodeoxyribonuclease-V-subunit-beta	unknown	unknown	gnl\|CDD\|236784
CP030062.1\|AWW34983.1\|1882632_1883475_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
CP030062.1\|AWW34980.1\|1880476_1881490_-\|subtype-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP030062.1\|AWW34977.1\|1874602_1875688_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
CP030062.1\|AWW34985.1\|1885549_1886272_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
CP030062.1\|AWW34982.1\|1881959_1882631_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
CP030062.1\|AWW34987.1\|1888904_1890668_+\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	unknown	unknown	gnl\|CDD\|132588
CP030062.1\|AWW34984.1\|1883495_1885553_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
CP030062.1\|AWW34988.1\|1890745_1891708_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
CP030062.1\|AWW34975.1\|1872734_1873934_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
CP030062.1\|AWW34971.1\|1868894_1869503_-\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|234990
CP030062.1\|AWW34974.1\|1872164_1872629_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
CP030062.1\|AWW34972.1\|1869641_1870556_+\|magnesium/cobalt-transporter-CorC	unknown	unknown	gnl\|CDD\|226910
CP030062.1\|AWW34970.1\|1867349_1868741_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981

Protein	Function_ID	Function_description	E-value
CP030062.1\|AWW34973.1\|1870612_1872118_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
CP030062.1\|AWW34976.1\|1873945_1874593_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	3.47317e-114
CP030062.1\|AWW34978.1\|1876196_1878599_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP030062.1\|AWW34986.1\|1886291_1888721_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.48124e-56
CP030062.1\|AWW34979.1\|1880133_1880427_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.34743e-32
CP030062.1\|AWW34969.1\|1863759_1867284_-\|exodeoxyribonuclease-V-subunit-beta	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
CP030062.1\|AWW34983.1\|1882632_1883475_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.50274e-112
CP030062.1\|AWW34980.1\|1880476_1881490_-\|subtype-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
CP030062.1\|AWW34977.1\|1874602_1875688_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.84966e-132
CP030062.1\|AWW34985.1\|1885549_1886272_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.15335e-92
CP030062.1\|AWW34982.1\|1881959_1882631_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.64672e-39
CP030062.1\|AWW34987.1\|1888904_1890668_+\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0
CP030062.1\|AWW34984.1\|1883495_1885553_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	1.57569e-165
CP030062.1\|AWW34988.1\|1890745_1891708_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
CP030062.1\|AWW34975.1\|1872734_1873934_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
CP030062.1\|AWW34971.1\|1868894_1869503_-\|DUF2057-domain-containing-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	4.32083e-67
CP030062.1\|AWW34974.1\|1872164_1872629_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	9.6766e-80
CP030062.1\|AWW34972.1\|1869641_1870556_+\|magnesium/cobalt-transporter-CorC	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	3.67736e-148
CP030062.1\|AWW34970.1\|1867349_1868741_-\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	5.02795e-173

>CP030062.1|AWW34978.1|1876196_1878599_+|endopeptidase-La
MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAMDSNKQLFLVTQQDPNKEDPSKDDMYSVGVTANIIQMLNLPDGTVKVLVEGQTRAKIEQIHDDENGFWAAIQPIYSEYDEENEELKTIAKTTLTEFENYVKNNKKIPAEIIPKLQKITLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRVKQQMEKNQRDYYLNEQIKAIQKELGNNDDVEQSELDKLKEKIDAAKLPTDVKDKLDGEFRKLKAMPQSSSEATVVRTYIDWILQMPWHKKSAVKKDLAKAQEVLDKDHYGLERVKDRIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAEIRGHRRTYIGAMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQNKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARDHLLAKQQENNGLKESELIVEDSAILSIIRYYTREAGVRGLEREIAKICRKAVKALVLDKKLKSIKVTESNIEDYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKGKFSYTGSLGDVMKESIQAAMVVVRSRADKLGIAADFHEKRDIHVHVPDGATPKDGPSAGIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPKENEKDLEEIPENAKAALRIHAVETIDEVLAIALENPPMGIEVLPKAEIKVKKSRTKATVQ
>CP030062.1|AWW34977.1|1874602_1875688_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTDAKYMAYAIELAKKAQGWTNPNPLVGCVIVKDGNIVAEGYHEKYGEWHAERNAILRSEQDLTGATAYVTLEPCCHYGRTPPCSDLLIERGIKKVFIGSRDPNPLVSGKGAKQLRAAGVEVVEDFMRAECDELNPIFFHYIQTKRPYVLLKYAMTADGKIATSTGESKWITGEQARAKVQETRHKYSSIMVGVETVLADDPMLNSRMPNAKQPVRIVCDSQLRTPLDCKLMQTAKEYRTVIATLNDDVKIHKAYQQFGVEIIVTKADNKRVDLLELLQKLGEMQIDSLLIEGGSSLNFSALKAGCVNRVHCYIAPKLIGGKEAKTPIGGEGISNLAEAVKLELKSTELIGDDILLDYVVK
>CP030062.1|AWW34976.1|1873945_1874593_-|riboflavin-synthase
MFTGIIEEVGQIAQIKKQGEFAVVTVKAKKVLTDVQLGDSIAVNGVCLTVTSFTKEQFTADVMSETLKRTSLGELSLNSPVNLERAMAANGRFGGHIVSGHIDGTGTVAEITPADNATWYRINASPKLLRYIIEKGSITIDGISLTVVDVNDESFRVSIIPHTIKETNLGSKKIGSLVNLENDIVGKYIEQFLLKKEPENQPSKLTVDFLKNAGF
>CP030062.1|AWW34975.1|1872734_1873934_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MFKFSTVEEAIQAIAAGKIILVSDDADRENEGDFICAAEFATPENINFMAKYGKGLICTPISTDIAERLDFHPMVVVNKDNHQTAFTVSVDHIETGTGISAFERSLTCLKMLDESAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAGLCCEIMAEDGTMMQMPELQAFAKEHNMPFITIQQLQEYRRKHDSLVDVVSVVNMPTKYGEFKAHSFVETLSGKEHVALVKGEIGNGENVLCRIHSECLTGDAFGSQRCDCGQQFAAAMSQVEAEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYYIAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHKMRHMFNF
>CP030062.1|AWW34974.1|1872164_1872629_-|6,7-dimethyl-8-ribityllumazine-synthase
MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVEAENIDTVWVPGALEISIAAKKMAQSGKYDAIICLGAVVRGSTSHYDVVVNESAKGISSSALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKMLG
>CP030062.1|AWW34973.1|1870612_1872118_+|apolipoprotein-N-acyltransferase
MNFAKNPPIITACIVALLLGAIGTFSYSPFDIWLLAFISCAGLIWAATLEQRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPVVVSYVAVFLLACYLAIYNLLFSVLSHQFKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPILGAEGLTFLVIVASGYFVKILKQESKTLPSLALLAVVFSLSFATRFLNFVQIDEEKQPLVVSLVQGNIEQKMKWDPQHFNFSVKTYEQLILPHLGKTDVIILPESAIPALENQIGGILNALDNLSRQTGSEIIIGTLYENEKEELFNSAVLLGKNEPYDLHASERYNKHHLVPFGEYVPFGSVLDWMREVFILPINLSQGSFIQSPMMAKNNRFNLAICYEIIFGDQVQQNQKSQNADYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVNANGKVIQQLPQFTTEVLTATIKPTKGNTPFKQFGTWLIYGLSLICLIISFLIRRR
>CP030062.1|AWW34972.1|1869641_1870556_+|magnesium/cobalt-transporter-CorC
MSDEQQSANISVNTTAEKSEKKSILHTLFGNLFQNEPKNREDLVEVIRDSVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLETFIDVIVESAHSRFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQEIIRPAVIVPESKRLDRMLKEFRSERFHMAVVVDEFGAVSGLVTIEDILEQIVGEIDDEFDEEEVKPIRQLSRHTYAVLPLTDIKKFNEFFATNFNDEEVDTIGGLVMKAFGYFPKRDEQIELEGLGFKVTSANSRRLIQLRVTLSDEQLEKMEQYSQSEEE
>CP030062.1|AWW34971.1|1868894_1869503_-|DUF2057-domain-containing-protein
MKLTKMALTAAALVVSSMSVAGTLSSSNMVEILAFDGQRVKKGTTSVQISDNKTHQVVIEIGGTVEGSFFTSDQIILTFQGTTENATIEPPRLKSKLDVRSFQDNQRVTIKSESGNVIAHKQDFLKGEGFLAKTRVEENLSKYNLGKNPASVEQFANAALEAKGQIIVDTNKVSESELQLLFQKADPKTQKRFLDWAKKNTK
>CP030062.1|AWW34970.1|1867349_1868741_-|MATE-family-efflux-transporter
MNLRWQEYPHNASKLFKLSLPIFISQLSASGMGLADIVMAGLVSDDDVSAIAVSNSIYFPLFLFVLGLLNAITPTVSYLNGSGNRHLIAHQIRQGVWLVLATSVPLIAIFLNSHLILDLMETPAEFSLKSQQYLAVMAVGLVPALLSINLRCMNDGLSNPKPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATVMVNWIMFLMMLHYCYTNPAQKDIRLFEKWIEAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVASHQAALQTSSLFFMIPMSFGIATTIMVGQTLGEKNVEGAKILSYHALITATILAIIAAIIIIVLKDLIPFAFTSNPISIAITANLLIFAAVYQIPDAIQAVVNGILRGYKHTQPILYVTLFCYWIISIPLGYTLARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRQIQSVPAEQLIAKLERIK
>CP030062.1|AWW34969.1|1863759_1867284_-|exodeoxyribonuclease-V-subunit-beta
MNNLNPITLPLNKSVLIEASAGTGKTFTIANIYLRLLLGVGCLPLTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDKVNGECIEGKSYANNLEFLEQFYPHIHHIHEALLRLSIAEREIDTASVFTIHSFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEDVWREQFYPQGVEESEIISTELATPESALSAVRNYLASELPEPNAFLNQDFSEHLVKYKQFIDEVKKEWIKNSKELTTLIREDLAAKKSLHGNKYRANKFEDIVTEMNVWVNTASLVLPKEFHRLTENMIVASTKDKCEPINSSYLAKNQTFLTAYKEQFENSLKAILLYQFLIGLKTKLAEYKQSHPERGFDDLLIMLNQALKNPQTGKALAQKIRSIYPFAMIDEFQDTDLTQYEIFSQIFMVEQSDNGFIMIGDPKQSIYKFRGADIFTYLRAAKQADEQFTLGKNWRSLPEVVQAVNNLFYFANKEKSPFLYDDIAFHPVESDDRKGKLISEQGHFVCYTSEKTKLDDVAEICAYQIHQQLNAMSEGNFGIEKNGEFKPFEPKDIAILVRKGSQAKRIKKALAKRNIKSVYLAESASVFGSEIATELCWILQAGLNPYNYKALLSALGSTLWGLSAAEIYRYKENEMLWDLKVNQFVEYSTIWKEQGILPMLHKIYLEQGIIERLKGLPNADRLITDLLHLTEILQETSQALESEAELVRWYEKQISSPDFNDEQQLRLESEEELIKIVTIHGSKGLQYPIVWLPFAAEKSEGDTKVNLGLYRNQKGDLDWYLGEEEVKEQIQNEAYAEDLRLFYVALTRAESQLNLVLPKMISGWSPLHYLLAEGELPKDKTSVVDYFNQKQISADIIEVAGHLPLSRWESGKTEESYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKAERVIDLAQDRDVHIELIEPDYTMETDAFSPFQFPHGIKVGTVLHSFLEHCRFSEQIDKESVAKVCEQLGLSEEWIEPTLGWFERIFATPLPEANFCLKEIDETKRLNEWQFYLRLKNDKALHQLNALLKQHSPLAKNLPELQLPQLEGFVRGFVDCIVQMNGKFYLIDYKSNFLGYLPQNYSAENIQREMGRQRYDLQYLLYTLAVHRYLTARLGENYDYDRDFGGVAYLFLRAMNGEDTSGVYFDKPCKKLIEEMDLLFG
>CP030062.1|AWW34979.1|1880133_1880427_-|CRISPR-associated-endonuclease-Cas2
MMMLITYDISFDDPEGQKRLRHIAKHCLDYGVRAQYSVFECDVTPDQWVKLKQKLLATYNPELDSLRFYHLGSKWRNKVEHHGAKKAVDLFKDTLIL
>CP030062.1|AWW34980.1|1880476_1881490_-|subtype-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPVHSIGNIFCFGNVLVSPFLLGFCGENNVNVAFFSENGRFLARLQGRQIGNVLLRRAQYKRSEENPVPIAKNIIAAKIQASKRVLQRRLRNHGDCEPVSQAVTALNISLKQLQKAENLELIRGIEGEAASRYFGVFQHLLSENVEFSFDGRNRRPPRDGVNALLSFLYSVLGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWVDRMVLSLINRGQIKPSDFIHESSGGVTLKPEARKLIFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQSMLLARHLRGDLAEYPPFLMR
>CP030062.1|AWW34981.1|1881689_1881881_-|hypothetical-protein
MHKRSEKSWFFHVEKDENNKYSLSWQGLSYRVLFLIIMASIIIAIIYNFPYLGKVMNYFLGGK
>CP030062.1|AWW34982.1|1881959_1882631_-|CRISPR-associated-protein-Cas4
MPTVLQNSEQIRPLAGQESNKETLLIPLSALQHYAFCPRQCALIHNEQAWAENYLTAQGRVLHERVDSGEPETRKGVRFERTVHLCAEQLGLTGIADMVEYELASGKFKPVEYKHGKPKPTGMDEIQLCAQALCLEEMTGQRIEEGALWYQQTRHRHTVLFSDELRTQTLSVIQAVRSLLQSGQTPPPNYSKHCNACSLLEICQPKLLRRDRSKEYVENFFSS
>CP030062.1|AWW34983.1|1882632_1883475_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLTKKIDFALIIQVKNANPNGDPLNGNRPRTDFEGFGEITDVCLKRKIRDRLQDDGESIFVQSDEKKTDGMTSLANRAKDKEVGLGNDAFNAKKSNRDETAKKACEKWLDVRSFGQVFAFGKSDDGAGVSIAVRGPVTIQSAFSVEPVLITSTQITKSVSGEGDGSKKSSDTMGMKHRVDGGIYVAYGAMSPQLAERTGFSDSDADKIKSVLTKLFEGDASSARPEGSMQVLKLIWWEHNCKSGQYSSAKVHGSLKVDADGSYTLSQLEGLKPQEIDGF
>CP030062.1|AWW34984.1|1883495_1885553_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWMQKLYRTYNEVEKNPELLDSDKLMFAPLWHSPQTAHINITLDGEGNFIRAKVLSDKPILMLPVTESSEGRTSGLAPHALADSLQYIAKDLGLTFSEEIVKEVEADNGKKKKIKEKVELPIFKLYSEQLDSWCAYTKNPKIHAIKKYVHKGTVLSDLIKAKVIPTDENGQLLNNWSEKENNGRLKPELFNVLTKEQGKFEIRKALVVWSVEIPNDLIPETWKDTEVQRDWGEYYQSTLKSQFCSILGKESEIRESHPAKLTYSGDKAKLISANDKEGYTFRGRFENANQASSISAEVSHKVHASLRWLIDRQGIRNGEQVTVAWAISGKEVPSPLQDPFQNFDFDNADTSAVENNAEFQTSADSETTPDWSANIGKEAANIIKKKYHGYKAKLEHHEQISLLMLDSATPGRMALTYYQEFLPKDYFANLDAWLDDFTWFQRHTFEVKGGKKNEKRTLWLELPPSPFAIAQAVYGKSLNDTLKKQLYARLLPVIAGGKSVPIPYDLVQKSFQVACNPHCCDTWEWQRNIGVACGLYRGWRARHHKESERRTYDMSLDIKNRSRDYLYGRLLAVAENIESYALYLAGEKRSTNAERYMQQFADRPYYTWRNLELALRPYQERLKNNGKDTGRQAISEIMELFATEDYLNDEKLSGEFLLGYHCQKMEIARQVAELKAKSAKQTEE
>CP030062.1|AWW34985.1|1885549_1886272_-|type-I-C-CRISPR-associated-protein-Cas5
MNNKISFRVWGRQALFTDPVTKIGGEKFSYPVPTYEALKGILRSIYWKPTLIWHIDRVRIMKQIRTQTKSTKPLDWNGGNTLAIYTFLQEVEYQVEAHFTWNEHWDELAGDRNPGKHMAIAERMLARGGRQDIFLGTRDCQGYVEPCQFGEGKSFYDGTGELDFGLMFHSFGYPEETGKHELISRFWNATMQNGVIEFPSVNDQSGRLKKRFIREMKPFKPFKRGENVKPVEDEEKELEL
>CP030062.1|AWW34986.1|1886291_1888721_-|CRISPR-associated-helicase/endonuclease-Cas3
MKNEYFAHIRKSDEVIQSVLTHLLETAQIARILATKLDLAEAGELLGLMHDFGKYSEKFQKYIRRVTGMLNQADLDSEDETNGGDHSTAGAQWIYRRLIKYGSNGIGELCGQVLGLCIASHHGAGLIDCLSPEGRAVWRDRFNKDDKDAHLSECEQKADKSILERAEQLASESLIQSLRKPIAAILSQQDVPFKIKELYLACLTRFLFSCLIDADRINSADFEREAQKEIRRFNEKPNWQQAIETLENYLSHFEMKYQIDQIRRNISNDCLMRAGDKQGIYSLTVPTGGGKTLATLRYALHHAQTHQLDRIIYIIPYTSIIDQNAQNVREILGDDWVLEHHSNIEPEKQTWQNKVLSENWDKPIIFTTMVQFLDAWFGGGTRGVRHIHAMTRSVLIFDEIQTLPIKCVHLFSNVLNWLAQFGKSTAVLCTATQPLLNQLKKPELGQVKLAENAELMGNQQNLTTLFDDLSRVEIHYRSQAGGFSLENAGEFLLEQFKLHSSCLFIVNTKKWAQDLYRYCQEHHIPQNALFHLSTNQCSAHRKVIFEQIKTRLQNKEPVICISTQLIEAGVDISMACVIRALGGLDSIAQAAGRCNRHGEKEGKGQVYVLNLKEPNLEEVLPDITIGQDKAVRVFGEYEGKDILQPAAMTQYFKYYFHDRSDEMVYPLKNSTSGSLLDWLSDNCHNVYTPKNDRRTQPFPLLMQSFKSAGREFQVIDAPTQAVIVPYGEGKEIITTLCSVEDNKKKYEALAKAQRYSVNVFPNVWRKLAEAEALQETQAGSGIYYLDERHYLDEYGLCTDRAGNMTCYDF
>CP030062.1|AWW34987.1|1888904_1890668_+|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO
MSEQTFITGKDAALEDSISTFQHKLKTLGFNIEEASWLNPVPNVWSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANGDFVHYPTEKWFPIEDEDVPPPEMMDNFLWEYFDPNGELTPELLVDLQSSNYDRGIVTLPYVRQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKHRIITEAISLPEIPQEVIDGYPTIKASIEKLEQEGFPILCYDASLGGEFPVICVILLNPQNGTCFASFGAHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANMETHFIDSSGLISWDLFKRDADYPFVHWDFSGTTEQEFSNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMSNIYPSDDLIYANNNMGLDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFIGVVAEKGSAMQTLRIGELKSMLHLALGNLEQALDWANWTANMNASVFTAERNNYYRCLISTIELFLDENREPTQYRSVFEKMYGEEAVEFAWNAVQGGNPFHGLTASDETLENMIAHQKLLNAYRKVQKAKVNPIAR
>CP030062.1|AWW34988.1|1890745_1891708_+|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDFRPFYQQIATTSLSAWLETLPLQLKQWEKTTHADYVKWAKVADFLPNSPACINLKDKVESIPTAPLSEGEIKQITHHLKQLMPWRKGPYHLHGIHIDTEWRSDFKWDRVLPHLAPLEGRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFEAVRKLLGNNRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVKGGELVLETLVIDGDVNDVLVPADRYAKMKNVYFIPSVPALINWLEKVGFKNVRCVDEAITTLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030062_2	2.12\|1879533\|36\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879533-1879568	36	CP030062.1	1537239-1537274	0	1.0

1. spacer 2.12|1879533|36|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to position: 1537239-1537274, mismatch: 0, identity: 1.0

aaatttcatttttcgtcattcgagggggagaaaatg	CRISPR spacer
aaatttcatttttcgtcattcgagggggagaaaatg	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030062_2	2.14\|1879668\|36\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879668-1879703	36	NC_028853	Mannheimia phage vB_MhS_535AP2, complete genome	19455-19490	0	1.0
CP030062_2	2.14\|1879668\|36\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879668-1879703	36	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	19455-19490	0	1.0
CP030062_2	2.11\|1879467\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879467-1879500	34	NC_028766	Mannheimia phage vB_MhM_3927AP2, complete genome	29212-29245	2	0.941
CP030062_2	2.6\|1879131\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879131-1879164	34	NZ_CP033124	Acinetobacter wuhouensis strain WCHAW010062 plasmid p4_010062, complete sequence	8285-8318	6	0.824
CP030062_2	2.8\|1879264\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879264-1879297	34	MN694434	Marine virus AFVG_250M173, complete genome	10203-10236	7	0.794
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	LR597655	Escherichia phage T5_ev219 genome assembly, chromosome: 1	54742-54776	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MF431732	Bacteriophage T5-like pork29, complete genome	54377-54411	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	LR597659	Escherichia phage T5_ev212 genome assembly, chromosome: 1	54350-54384	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MF431731	Bacteriophage T5-like pork27, complete genome	54376-54410	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MK373796	Escherichia phage vB_EcoS_HdH2, complete genome	53200-53234	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MF431733	Bacteriophage T5-like saus47N, complete genome	54377-54411	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MF431735	Bacteriophage T5-like poul124, complete genome	54386-54420	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	AP019559	Escherichia phage SP15 DNA, complete genome	52798-52832	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MN956514	Salmonella phage L6jm, complete genome	53374-53408	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MF431734	Bacteriophage T5-like saus111K, complete genome	54377-54411	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	CP000917	Enterobacteria phage EPS7, complete genome	57290-57324	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	NC_047885	Bacteriophage T5-like chee24, complete genome	54377-54411	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MT311645	Salmonella phage vB_Sen-E22, complete genome	101013-101047	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MH370378	Salmonella phage S131, complete genome	53224-53258	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	NC_047754	Escherichia phage APCEc03, complete genome	88822-88856	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MH370377	Salmonella phage S130, partial genome	53224-53258	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	NC_048865	Salmonella phage oldekolle, complete genome	66550-66584	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	NC_048011	Salmonella phage S133, complete genome	50593-50627	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MH370367	Salmonella phage S114, complete genome	50593-50627	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	NC_047822	Escherichia phage phiLLS, complete genome	29143-29177	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	LR027384	Escherichia virus vB_Eco_mar004NP2 genome assembly, chromosome: 1	11558-11592	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	LR597655	Escherichia phage T5_ev219 genome assembly, chromosome: 1	54742-54776	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MF431732	Bacteriophage T5-like pork29, complete genome	54377-54411	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	LR597659	Escherichia phage T5_ev212 genome assembly, chromosome: 1	54350-54384	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MF431731	Bacteriophage T5-like pork27, complete genome	54376-54410	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MK373796	Escherichia phage vB_EcoS_HdH2, complete genome	53200-53234	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MF431733	Bacteriophage T5-like saus47N, complete genome	54377-54411	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MF431735	Bacteriophage T5-like poul124, complete genome	54386-54420	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	AP019559	Escherichia phage SP15 DNA, complete genome	52798-52832	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MN956514	Salmonella phage L6jm, complete genome	53374-53408	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MF431734	Bacteriophage T5-like saus111K, complete genome	54377-54411	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	CP000917	Enterobacteria phage EPS7, complete genome	57290-57324	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	NC_047885	Bacteriophage T5-like chee24, complete genome	54377-54411	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MT311645	Salmonella phage vB_Sen-E22, complete genome	101013-101047	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MH370378	Salmonella phage S131, complete genome	53224-53258	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	NC_047754	Escherichia phage APCEc03, complete genome	88822-88856	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MH370377	Salmonella phage S130, partial genome	53224-53258	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	NC_048865	Salmonella phage oldekolle, complete genome	66550-66584	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	NC_048011	Salmonella phage S133, complete genome	50593-50627	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MH370367	Salmonella phage S114, complete genome	50593-50627	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	NC_047822	Escherichia phage phiLLS, complete genome	29143-29177	8	0.771
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	LR027384	Escherichia virus vB_Eco_mar004NP2 genome assembly, chromosome: 1	11558-11592	8	0.771
CP030062_2	2.4\|1878999\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1878999-1879032	34	MT713136	Aeromonas phage AP1, complete genome	58725-58758	8	0.765
CP030062_2	2.4\|1878999\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1878999-1879032	34	MF498773	Aeromonas phage AS-szw, complete genome	137241-137274	8	0.765
CP030062_2	2.6\|1879131\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879131-1879164	34	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	269854-269887	8	0.765
CP030062_2	2.13\|1879601\|35\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879601-1879635	35	NC_017732	Enterococcus phage EF62phi, complete genome	20080-20114	8	0.771
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	MN026741	Salmonella phage Th1, complete genome	53989-54023	9	0.743
CP030062_1	1.1\|1717172\|35\|CP030062\|CRISPRCasFinder,CRT	1717172-1717206	35	NC_015269	Enterobacteria phage SPC35, complete genome	52784-52818	9	0.743
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	MN026741	Salmonella phage Th1, complete genome	53989-54023	9	0.743
CP030062_1	1.8\|1717173\|35\|CP030062\|PILER-CR	1717173-1717207	35	NC_015269	Enterobacteria phage SPC35, complete genome	52784-52818	9	0.743
CP030062_2	2.6\|1879131\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879131-1879164	34	NZ_CP034564	Flammeovirga pectinis strain L12M1 plasmid unnamed1, complete sequence	46506-46539	9	0.735
CP030062_2	2.8\|1879264\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879264-1879297	34	MN693853	Marine virus AFVG_250M299, complete genome	33914-33947	11	0.676
CP030062_2	2.11\|1879467\|34\|CP030062\|PILER-CR,CRISPRCasFinder,CRT	1879467-1879500	34	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	174092-174125	11	0.676

1. spacer 2.14|1879668|36|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 0, identity: 1.0

caatttatatcaatacaaaaaaggcttaagcgatcc	CRISPR spacer
caatttatatcaatacaaaaaaggcttaagcgatcc	Protospacer
************************************

2. spacer 2.14|1879668|36|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

caatttatatcaatacaaaaaaggcttaagcgatcc	CRISPR spacer
caatttatatcaatacaaaaaaggcttaagcgatcc	Protospacer
************************************

3. spacer 2.11|1879467|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to NC_028766 (Mannheimia phage vB_MhM_3927AP2, complete genome) position: , mismatch: 2, identity: 0.941

gtgtaggttctctgctccatcttattcatcgcga	CRISPR spacer
gtgtaggttctctgctccatcttattcaacgtga	Protospacer
**************************** **.**

4. spacer 2.6|1879131|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033124 (Acinetobacter wuhouensis strain WCHAW010062 plasmid p4_010062, complete sequence) position: , mismatch: 6, identity: 0.824

-gtattatctgtttgaattacttgaaaatattgag	CRISPR spacer
agcgttttct-tttgaactacttgaatatattgag	Protospacer
 *..** *** ******.******** ********

5. spacer 2.8|1879264|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to MN694434 (Marine virus AFVG_250M173, complete genome) position: , mismatch: 7, identity: 0.794

agcttata----ctaaagatattaattcagataaagtc	CRISPR spacer
----tatagttgctaaagatattaagtcaaataaagta	Protospacer
    ****    ************* ***.*******

6. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to LR597655 (Escherichia phage T5_ev219 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

7. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MF431732 (Bacteriophage T5-like pork29, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

8. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to LR597659 (Escherichia phage T5_ev212 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

9. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MF431731 (Bacteriophage T5-like pork27, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

10. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MK373796 (Escherichia phage vB_EcoS_HdH2, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

11. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MF431733 (Bacteriophage T5-like saus47N, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

12. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MF431735 (Bacteriophage T5-like poul124, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

13. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to AP019559 (Escherichia phage SP15 DNA, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

14. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MN956514 (Salmonella phage L6jm, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

15. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MF431734 (Bacteriophage T5-like saus111K, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

16. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to CP000917 (Enterobacteria phage EPS7, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

17. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to NC_047885 (Bacteriophage T5-like chee24, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

18. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MT311645 (Salmonella phage vB_Sen-E22, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

19. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MH370378 (Salmonella phage S131, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

20. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to NC_047754 (Escherichia phage APCEc03, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

21. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MH370377 (Salmonella phage S130, partial genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

22. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to NC_048865 (Salmonella phage oldekolle, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

23. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to NC_048011 (Salmonella phage S133, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

24. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MH370367 (Salmonella phage S114, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

25. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to NC_047822 (Escherichia phage phiLLS, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

26. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to LR027384 (Escherichia virus vB_Eco_mar004NP2 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

27. spacer 1.8|1717173|35|CP030062|PILER-CR matches to LR597655 (Escherichia phage T5_ev219 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

28. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MF431732 (Bacteriophage T5-like pork29, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

29. spacer 1.8|1717173|35|CP030062|PILER-CR matches to LR597659 (Escherichia phage T5_ev212 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

30. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MF431731 (Bacteriophage T5-like pork27, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

31. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MK373796 (Escherichia phage vB_EcoS_HdH2, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

32. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MF431733 (Bacteriophage T5-like saus47N, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

33. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MF431735 (Bacteriophage T5-like poul124, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

34. spacer 1.8|1717173|35|CP030062|PILER-CR matches to AP019559 (Escherichia phage SP15 DNA, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

35. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MN956514 (Salmonella phage L6jm, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

36. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MF431734 (Bacteriophage T5-like saus111K, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

37. spacer 1.8|1717173|35|CP030062|PILER-CR matches to CP000917 (Enterobacteria phage EPS7, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

38. spacer 1.8|1717173|35|CP030062|PILER-CR matches to NC_047885 (Bacteriophage T5-like chee24, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

39. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MT311645 (Salmonella phage vB_Sen-E22, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

40. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MH370378 (Salmonella phage S131, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

41. spacer 1.8|1717173|35|CP030062|PILER-CR matches to NC_047754 (Escherichia phage APCEc03, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

42. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MH370377 (Salmonella phage S130, partial genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

43. spacer 1.8|1717173|35|CP030062|PILER-CR matches to NC_048865 (Salmonella phage oldekolle, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

44. spacer 1.8|1717173|35|CP030062|PILER-CR matches to NC_048011 (Salmonella phage S133, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

45. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MH370367 (Salmonella phage S114, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

46. spacer 1.8|1717173|35|CP030062|PILER-CR matches to NC_047822 (Escherichia phage phiLLS, complete genome) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

47. spacer 1.8|1717173|35|CP030062|PILER-CR matches to LR027384 (Escherichia virus vB_Eco_mar004NP2 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.771

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
gctgtttaataatgccaataaaccctcagaacgtt	Protospacer
*********.************* **. .* * *

48. spacer 2.4|1878999|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to MT713136 (Aeromonas phage AP1, complete genome) position: , mismatch: 8, identity: 0.765

ttatgttgaggtgggaacaacaaaatcattgcga	CRISPR spacer
atctattgtggtaggaacaacaaaatcattataa	Protospacer
 * *.*** ***.*****************...*

49. spacer 2.4|1878999|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to MF498773 (Aeromonas phage AS-szw, complete genome) position: , mismatch: 8, identity: 0.765

ttatgttgaggtgggaacaacaaaatcattgcga	CRISPR spacer
atctattgtggtaggaacaacaaaatcattataa	Protospacer
 * *.*** ***.*****************...*

50. spacer 2.6|1879131|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.765

gtattat-ctgtttgaattacttgaaaatattgag	CRISPR spacer
-gaccatactgtttccattacttgaaaatattcac	Protospacer
  *..** ******  **************** *

51. spacer 2.13|1879601|35|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to NC_017732 (Enterococcus phage EF62phi, complete genome) position: , mismatch: 8, identity: 0.771

ctcaa---cgctcataactttctactcctcttgtttgt	CRISPR spacer
---aaatccattcataattttctactcctcttcttttt	Protospacer
   **   *..******.************** *** *

52. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to MN026741 (Salmonella phage Th1, complete genome) position: , mismatch: 9, identity: 0.743

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
actgtttaataatgccaataaaccctcagaacgtt	Protospacer
.********.************* **. .* * *

53. spacer 1.1|1717172|35|CP030062|CRISPRCasFinder,CRT matches to NC_015269 (Enterobacteria phage SPC35, complete genome) position: , mismatch: 9, identity: 0.743

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
actgtttaataatgccaataaaccctcagaacgtt	Protospacer
.********.************* **. .* * *

54. spacer 1.8|1717173|35|CP030062|PILER-CR matches to MN026741 (Salmonella phage Th1, complete genome) position: , mismatch: 9, identity: 0.743

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
actgtttaataatgccaataaaccctcagaacgtt	Protospacer
.********.************* **. .* * *

55. spacer 1.8|1717173|35|CP030062|PILER-CR matches to NC_015269 (Enterobacteria phage SPC35, complete genome) position: , mismatch: 9, identity: 0.743

gctgtttaacaatgccaataaacgctttaatcctg	CRISPR spacer
actgtttaataatgccaataaaccctcagaacgtt	Protospacer
.********.************* **. .* * *

56. spacer 2.6|1879131|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034564 (Flammeovirga pectinis strain L12M1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gtattatctgtttgaattacttgaaaatattgag	CRISPR spacer
tgaagataagtctgaagtacttgaaaatattgat	Protospacer
  *  **  **.**** ****************

57. spacer 2.8|1879264|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to MN693853 (Marine virus AFVG_250M299, complete genome) position: , mismatch: 11, identity: 0.676

agcttatactaaagatattaattcagataaagtc	CRISPR spacer
catattaactaaagatattaatttagattaaaaa	Protospacer
 .. *  ****************.**** **.

58. spacer 2.11|1879467|34|CP030062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

gtgtaggttctctgctccatcttattcatcgcga	CRISPR spacer
aaaatggttttcagctccatcttattcatcttct	Protospacer
. .  ****.** ***************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

770880 : 780565

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW34032.1\|770880_772590_+	hypothetical protein	F2Y0P4	Organic_Lake_phycodnavirus	2.0e-14	31.0
AWW34033.1\|772579_773479_+	rhamnosyltransferase	NA	NA	NA	NA
AWW34034.1\|773493_774555_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-99	51.9
AWW34035.1\|774563_775442_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.1e-109	66.0
AWW34036.1\|775441_776317_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.8e-41	38.5
AWW34037.1\|776325_776868_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.4e-51	52.5
AWW34038.1\|776917_778174_-	O-antigen ligase family protein	NA	NA	NA	NA
AWW34039.1\|778422_778638_+	30S ribosomal protein S21	NA	NA	NA	NA
AWW34040.1\|778792_780565_+	DNA primase	A0A1B0WMR3	Flavobacterium_phage	1.2e-38	30.4

DBSCAN-SWA_2

1808838 : 1818801

Chrysochromulina_ericina_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW34923.1\|1808838_1810692_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.5e-108	42.6
AWW34924.1\|1810751_1811384_-	hypothetical protein	NA	NA	NA	NA
AWW34925.1\|1811418_1811940_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
AWW34926.1\|1811949_1812273_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.7e-23	46.7
AWW34927.1\|1812381_1812765_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.3e-51	75.0
AWW34928.1\|1812904_1814125_-	IscS subfamily cysteine desulfurase	A0A2K9L679	Tupanvirus	1.3e-15	23.7
AWW34929.1\|1814181_1814634_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
AWW34930.1\|1814987_1816328_+	hypothetical protein	NA	NA	NA	NA
AWW34931.1\|1816392_1816947_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.3e-28	44.0
AWW34932.1\|1816959_1818801_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	3.5e-41	29.8

DBSCAN-SWA_3

2070695 : 2078513

Pandoravirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW35150.1\|2070695_2071454_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	1.7e-13	28.0
AWW35151.1\|2071533_2073465_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.6e-52	29.4
AWW35152.1\|2073563_2076254_-	DNA gyrase subunit A	A0A172JHV7	Bacillus_phage	1.7e-108	31.3
AWW35153.1\|2076351_2076732_-	deoxyribonuclease	A0A023NGV8	Nitrincola_phage	1.6e-28	52.3
AWW35154.1\|2076795_2077509_+	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	A0A1X9I669	Streptococcus_phage	7.8e-05	28.3
AWW35155.1\|2077571_2078513_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.0e-125	84.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection