CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029712	Pasteurella multocida strain 3358 chromosome, complete genome	3 crisprs	cas3,cas8f,cas5f,cas7f,cas6f,cas1,cas3-cas2,DEDDh,DinG,csa3	0	9	1	0

1. CP029712

CRISPR-Cas detection and classification

Crispr_ID: CP029712_1

• CRISPR_ID: CP029712_1
• CRISPR_location: 337492-337616
• CRISPR_type: TypeI-F
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas6f,cas7f,cas5f,cas8f,cas1,cas3-cas2

Consensus repeat of CP029712_1

Consensus_repeat	Method
GTTCACCATCGTGTAGATGGCTTAGAAAA	CRISPRCasFinder

spacers of CP029712_1

>1.1|337521|67|CP029712|CRISPRCasFinder
TTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAAGTTAAAGCTAAGAAACTAACGGATATTGCGA

CRISPR arrays and Neighbor proteins around CP029712_1

CRISPR arrays

The CRISPR arrays of CP029712_1

>merge|CP029712|1|337492-337616|CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAATTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAAGTTAAAGCTAAGAAACTAACGGATATTGCGAGTTCACCATCGTGTAGATGGCTTAAAAAA

>CP029712|1|1|337492-337616|CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAAT	TTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAAGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029712.1|AWW51176.1|327176_327446_+|30S-ribosomal-protein-S15	unknown	unknown	gnl|CDD|180170
CP029712.1|AWW51182.1|335780_336788_+|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl|CDD|378222
CP029712.1|AWW51183.1|336790_337351_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl|CDD|274202
CP029712.1|AWW51186.1|342123_343980_+|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl|CDD|236842
CP029712.1|AWW51187.1|344120_344711_+|hypothetical-protein	unknown	unknown	unknown
CP029712.1|AWW51193.1|349000_349324_+|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl|CDD|213674
CP029712.1|AWW51190.1|346586_347051_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl|CDD|273927
CP029712.1|AWW51180.1|333450_334785_+|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl|CDD|274203
CP029712.1|AWW51174.1|323549_324065_+|heme-utilization-protein-HutZ	unknown	unknown	gnl|CDD|200361
CP029712.1|AWW51184.1|337784_338765_+|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl|CDD|187849
CP029712.1|AWW51192.1|348544_348931_+|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl|CDD|183087
CP029712.1|AWW51188.1|344774_345578_-|inositol-1-monophosphatase	unknown	unknown	gnl|CDD|236753
CP029712.1|AWW51185.1|338745_342066_+|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl|CDD|187804
CP029712.1|AWW51178.1|328878_330927_+|methionine--tRNA-ligase	unknown	unknown	gnl|CDD|234655
CP029712.1|AWW51177.1|327584_328697_-|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl|CDD|183270
CP029712.1|AWW51191.1|347098_348313_+|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl|CDD|184450
CP029712.1|AWW51179.1|331060_333220_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl|CDD|236981
CP029712.1|AWW51181.1|334794_335778_+|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl|CDD|274204
CP029712.1|AWW51175.1|324106_327010_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl|CDD|273808
CP029712.1|AWW51189.1|345791_346508_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl|CDD|223639

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP029712.1|AWW51182.1|335780_336788_+|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	2e-151	498.8	1.0
CP029712.1|AWW51183.1|336790_337351_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	1.7e-72	237.9	0.0
CP029712.1|AWW51185.1|338745_342066_+|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	0	1806.7	16.6
CP029712.1|AWW51180.1|333450_334785_+|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	4.9e-143	471.3	1.8
CP029712.1|AWW51181.1|334794_335778_+|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	8.8e-134	440.1	0.0
CP029712.1|AWW51184.1|337784_338765_+|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	1.6e-156	514.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029712.1|AWW51176.1|327176_327446_+|30S-ribosomal-protein-S15	gnl|CDD|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.85836e-50
CP029712.1|AWW51182.1|335780_336788_+|type-I-F-CRISPR-associated-protein-Csy3	gnl|CDD|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP029712.1|AWW51183.1|336790_337351_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl|CDD|274202	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.09974e-90
CP029712.1|AWW51186.1|342123_343980_+|hybrid-sensor-histidine-kinase/response-regulator	gnl|CDD|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
CP029712.1|AWW51192.1|348544_348931_+|Fe-S-cluster-assembly-scaffold-IscU	gnl|CDD|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.51567e-94
CP029712.1|AWW51193.1|349000_349324_+|iron-sulfur-cluster-assembly-protein-IscA	gnl|CDD|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.36459e-65
CP029712.1|AWW51190.1|346586_347051_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl|CDD|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	5.78928e-83
CP029712.1|AWW51180.1|333450_334785_+|type-I-F-CRISPR-associated-protein-Csy1	gnl|CDD|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	5.29485e-151
CP029712.1|AWW51174.1|323549_324065_+|heme-utilization-protein-HutZ	gnl|CDD|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	2.01653e-97
CP029712.1|AWW51184.1|337784_338765_+|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
CP029712.1|AWW51188.1|344774_345578_-|inositol-1-monophosphatase	gnl|CDD|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	9.50997e-153
CP029712.1|AWW51185.1|338745_342066_+|type-I-F-CRISPR-associated-helicase-Cas3	gnl|CDD|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
CP029712.1|AWW51178.1|328878_330927_+|methionine--tRNA-ligase	gnl|CDD|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
CP029712.1|AWW51177.1|327584_328697_-|iron-sulfur-cluster-carrier-protein-ApbC	gnl|CDD|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
CP029712.1|AWW51191.1|347098_348313_+|IscS-subfamily-cysteine-desulfurase	gnl|CDD|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
CP029712.1|AWW51179.1|331060_333220_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl|CDD|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
CP029712.1|AWW51181.1|334794_335778_+|type-I-F-CRISPR-associated-protein-Csy2	gnl|CDD|274204	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.3086e-151
CP029712.1|AWW51175.1|324106_327010_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl|CDD|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.24483e-109
CP029712.1|AWW51189.1|345791_346508_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl|CDD|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.89077e-117

Protein sequences

>CP029712.1|AWW51183.1|336790_337351_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTTHYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEGRVGVAFPAYGLGRTLGGIVRLFANQEDCNQLHQQLLRSGLSDYALISEVSKTPLSTECRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVAFFPHCHLKSASTGQRFILAVKENRMPQSCVGVFNAYGLSNSATVPHF
>CP029712.1|AWW51182.1|335780_336788_+|type-I-F-CRISPR-associated-protein-Csy3
MSKLSTPSVLAFERNLDISDAIFAQKDSKNDKDAPVPLRIREKSVRGTISNRLKNTITNDPAKLDAETEKANLQRVDVATLDDDKDTLVATFSVKVLPFTGRPNVCNDQDYQHQVMTTVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKIKIEVTCGENTLHFDDAKQFSLNHFDHQDDKIHQIAKEIKQGLLGEKFVILYVTAYANMGYGQEVYPSQELVLDNSTNNRKSKILYEINQKAGMHSQKVGNAIRTIDTWYAEEVAFPIAAEPYGAVTTLGTAFRQPKTKKNDFYTLFDNWLLKGEVPPVEQQHYVMSVLIRGGVFGASGKE
>CP029712.1|AWW51181.1|334794_335778_+|type-I-F-CRISPR-associated-protein-Csy2
MFQTDFYILFDHIKVQSANAISGPLSYGFPALTGLTGAMHALNRKLTHHPVQFGGVMVACHDYELQTYQNSAFSDRTFKQTRNPIKRNGETASIIEEGKIHLDLSLVVEVHVQDDRVFEALTDKTSQASQDFLQTCKNLLWQQRIAGGSVLEIGNVQLFNLEEDQDIPLALMPAFVLMDAKQELTNITEELKTGLRIGQLDEEGNVQKSCLPSCPDATALDALLEMATVHHIPEHANATASAWQTYSVKKGRGWLVPLPVGYQAISPLFAPGQLQHCRTQQYPSQYVETLYSLGKWVFPLSLPENLSQCFWRYTALQNNLYLISQGE
>CP029712.1|AWW51180.1|333450_334785_+|type-I-F-CRISPR-associated-protein-Csy1
MSHTFRKRIDLFLQEQNLKKSESDRKKLAKATDPTEIEQLTQLIQEFDQKYQFDTWIANAANVMAKQLKFGTHIAKGIHPDTKGDNVNFQPSDSLPPEYVGSQSVSHLVLDANGNAAALPLASFFNFIVDEEKQVKLRDLLLADDPRLAGCFSDDLALSDVYKKQFQQALTGDLTQPETHERNKQVFWANGENPIEDDDYTCLIPLYPSSLTHAFYQKVNNNRYSEQNKQARENRQKKTVEQTHYLSINQLATVVLGGSKPQNISQLMSAQGGRNYLLPSLPPIIPSSRYFRLSPLQTTIFNDRLAYACRYGLRQLFEVVEARKNVYQVRDSRIDALNNILRTFLFHANLLQKQPAGWSKDSQLEMCEKYWLDPKRVHLPDEEAFRAEYEKGEWVAEVERRFALWLNKRLQKRFPHIAKDFDDVEYHEWRRNIRRTLRYRLRHP
>CP029712.1|AWW51179.1|331060_333220_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MKQLFATTARGFEELLKVELTDLGAMDCQITQGGVHFHADEETQYRVLLWTRLASRILLPIVTCKVYSDLDLYSAVVGQNWLDYFDEKAHFMVDFNGTNREIRHTQFGAMRVKDGIVDYFERVGKPRPNVDKSQPDIRIHAYLNREELVISLDLSGDALHMRGYREDTGKAPLRETLAAAIVLRSGWQLGTPLVDPMCGSGTLLIEAAQMQANIAPQLHRLHWGFDFWKGHNQQAWDKVKGEAIELAEQTFNQNQKANFYGCDLDHRVLQKAKRNAQNAGVAHLIQWRQGDVAALKNPFVEAKGTVICNPPYGERLGTTPALIALYSVFGQRLKQQFADWNVSIFSGEPALLDCLRLRSHRQFKAKNGPLDCVQKNYHISARATASDENTQNLPEIDRTLSATQVAVDFANRLQKNSKKIEKWARQQGINAYRLYDADLPEYNLAVDRYDDHIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQYEKLANKGDYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMLGKMAKGKDVLNLFAYTGSATVHMALGGAKSTTTVDMSNTYLNWAEQNLLLNDLEGKQHKLIQADCLQWLARCDRQFDLIFVDPPTFSNSKRMEDSWDVQRDHIKLMTQLKRILRPNGTIVFSNNKRGFKMDVEGLETLGLSAVDITAKTLPLDFERNKQIHNCWVVRLKADL
>CP029712.1|AWW51178.1|328878_330927_+|methionine--tRNA-ligase
MANSARDILVTCALPYANGAIHLGHLLEHIQADIWVRFQRMRGHKVHFICADDAHGTPIMLNADKLGITPEALIARSKADHVADFEGFNISYDNYHSTHSPENEALTAEMYKKLRANGFIKSRTISQLFDPEKGMFLPDRFVKGTCPKCKAEDQYGDNCEVCSSTYSPTELINPRSVVSGATPVLKESEHFFFDLPAFEGMLKAWIKSGSLQPEIANKMQEWFESGLQQWDISRDAPYFGFKIPDTEDKYFYVWLDAPIGYMASFKNLCDKTGLNFDDFWKKDSSAELYHFIGKDIVYFHSLFWPAMLDGCDLRKPTNVFAHGYVTVNGVKMSKSRGTFIQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFITKRFDGKLSAEIAEPELLAEFVEKAAQIATYYEEREFGKVVREVMQLADKANKYIDDKAPWVMAKEEGREAELQAVCSMALQLFRVLAIYLKPVIPQIIARAEAFLQDELTWESLNRPLLNHAILPFKALAQRLDLKQIEAIVNETKEQFVAQQALEQKNSAKAEPASQVEPIAETISIEDFAKLDLRVAKVMKCEAVPESNKLLRFELDLGDHTRQVFSGIKEAYNNPAELEGRFVVVIANLAPRKMRFGVSEGMILSAGTGGDDLFLLNADQGVKPGMQVK
>CP029712.1|AWW51177.1|327584_328697_-|iron-sulfur-cluster-carrier-protein-ApbC
MGILFSDSLTDSQKQAIQNTFQQFQHPSLQKDLVSLNAIKKIEKGGETLRIEISMPFAWNTAFEQLKSALSTELLTLAECKDIKWQLNYQIATLKRANSHPAVKGVKNIIAVTSGKGGVGKSTISVNLALALQRQGARVGILDADIYGPSIPHMLGVADQRPTSPDNQHITPIQAHHIFANSIGFLMEPDNATIWRGPMASSALSQLLQETLWPDLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGVAMFERVSVPVLGIIENMSMHICSNCGHQETIFGTGGAERIAQKYNVKVLGQQALHIRLREDLDKGIPTVVAAPESDIAQSFMQLAEKVATELYWQGSVIPSEIMFKEVK
>CP029712.1|AWW51176.1|327176_327446_+|30S-ribosomal-protein-S15
MSLSTEKKAAIVAEFGRDAKDTGSSEVQIALLTAQINHLQSHFATHKKDHHGRRGLLRMVSRRRKLLDYLKRTNLELYTSTIARLGLRR
>CP029712.1|AWW51175.1|324106_327010_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MRTTTIKFSAITLALLSYCGTILADSHQEATELDTITVSSQQDEMNIKEKKIGETVKTASQLKRQQVQDSRDLVRYETGVTVVEAGRFGSSGYAIRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKVAKIAKGADSVKVGSGSLGGAVLFETKDARDFLTEKDWHIGYKAGYSTADNQGLNAVTLAGRYQMFDALIMHSKRHGHELENYDYKNGRDIQGKEREKADPYTITKESTLVKFSFSPTENHRFTVASDTYLQHSRGHDLSYNLVATTHIQLDEKESRHANDLTKRKNVSFTYENYTVTPFWDTLKLSYSQQRITTRARTEDYCDGNELCDSYKNPLGLQFKDGQILDPAGNKIKLQGSGLSTQIVDENGKPFPTTTGTNNAAFSNNLRLRPTGFWLDCSVFDCNKPFTVYNISNGTYQAREVLLSEEITVDGKLYKTAKEEGGLPNYLILPNSKGYLPYDYKERDLNTNTKQINLDLTKTFLTFNIENNLSYGGVYSRIEKEMINKAGYEGRNPTWWADRILGQSSYCGYNALKCPKHEPLTSFLIPVEATTQSLYFANILKVHNMISIDLGYRYDHIKYNPEYTPGVTPKIPDDMVKGLFIPMPKEPQLKDFDYNYAKFGEAYKKWKEYLPKNAEENIAYIAQDKTFKKHSYSLGATFDPLNFLRVQVKYSKGFRAPTSDELYFTFKHPDFTILPNPVLKPEEAKNQEIALTVHDNWGFVSTSVFQTKYRHFIDLAYLGSRNLSNSVGGQAQARDFQVYQNVNVDNAKVKGLEINARLNLGYFWHVLDGFNTSYKFTYQRGRLDGDRPMNAIQPKASVFGLGYDHKENKFGADLYITRVSEKKAKDTYNMFYKEQGYKDSAVRWRSDDYTLVDAVGYIKPIKNLTLQFGVYNLTDRKYLTWESARSIKPFGTSNLINQKTGAGINRFYSPGRNFKLSAEITF
>CP029712.1|AWW51174.1|323549_324065_+|heme-utilization-protein-HutZ
MTTNRQEVLQNRLGPEIQELKAQCKTVMLATVGEDGNPNVSYAPFAINNGEYQVFISTIARHARNLQEVPKVSLMLIEDESQSRQIFARRRLSFDAVARVVERESEEWHSGVEALKARHGALMDELSRMKDFHLFSFKPSQGLFVKGFGQAFQVSNDDLVSFVHLVEGHQE
>CP029712.1|AWW51184.1|337784_338765_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MRKTPYIPSSDLKTIMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRESLYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTPLFNGTEAEIGCEFFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEWVYSCEKLTALVTQYQHEFAQAAHSQALLAAEGRLTTKLYALANQATMNEPDFKRSERGKSIDLVNQFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLALQGASDEYFAG
>CP029712.1|AWW51185.1|338745_342066_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRRQFNDQGRVPTNRTQRNILRAEEEIAWQDAYSLQILTALSALLHDVGKSSVGFQTKLDKTKNAPRVADSYRHEWISVRLFEAMIEGCQTDQAWLERLANWQVFEETNPTWFSKIIQDRPNENHFSDFAYLPPLARRVIWLITSHHRLPFTHDISRSQDCIKNLRKYAKLTFESLFKAYKPAVGWVSNGAEHPTPQAFWQFQRVATQSQAWQKHMARWAKKALNHPALFSVSENADPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQPKQRLDEHLIGVCQTAVRFARLLPKFPRELPRIKQHKPFVQLAKDRFAWQNKAVNVARLLQKTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIALGLRVLTLQTGSALKKRLHLSDQDLAVLVGGSAVKKLYALQQEKQNQLAQQGSESAEDWLEDMQVEGATYIESAVENEAVLSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRVLLSSATLTPDFITGLFKAYQAGRKIYNQQKGIVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVRRQAEILSLPSLKPREGEDLHYGLLADTLLQKAMALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLAKALFALQASEKFADYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTPEQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAEQPNIALLPINWRGLKVRYQQKDVIYHRPGFESHQHKLATHKLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNHPSENLVNLYWDPRYCNYLLANLPLMSEFRKSMAELEVVCVPDEDSHWGFGFYRAQKRDEETLSALPEIQYEPIQQDKHAVVQPWLAAALDTVLSDLAEQLNVVSPEWIAPTYLCASLPQYDGKLDWHYNEVYGFW
>CP029712.1|AWW51186.1|342123_343980_+|hybrid-sensor-histidine-kinase/response-regulator
MKNIKYFTQKYVDWVIRLGRLRFSILGVIVLAILALCTQALLSLFIIGEVYWVDMIRSVVFGLISAPFVIYFFTVLVEKLERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPVRVQNQMPSTLNILLVEDIEVNVVVAKSVLEKLGYVVDVAMTGQQAIEKFEQQYYDLLLLDIQLPDMSGFAVAKYLREGYENGQYDFLPPLIALTANVMHDKKEYQAQGMDDVLRKPLSIEELTACLVEYFGHDVSLCLETPTTHQITQDATHFDVKMLSELVEMLGTDFVLKNLALFKETMPEYMQALMTAYSVYQQDESQKADVLSCAHKIKGAAASVGLKRIQQIAAQAQDPEQGEWTENIHDWVQQLAQYWLLDVEALERYLNKSV
>CP029712.1|AWW51187.1|344120_344711_+|hypothetical-protein
MKIFAVLSAFLMPFVVPNTTVNGYKDLRFGMTIEQAKETKLCEDQWHLPADDDWRRVVRGYWVCDKFRFDDGYAVARLRFIGGQLKSIELKMPEYPKYPAELLLHVLEEKYGKTIEVEQRDLIEEDILQGKIRKRRKNESALLDTYQFAKGTVSLTLLTYNGIPQPAEIIYSAPELLLLEKKLEDRPQRRTLLRDL
>CP029712.1|AWW51188.1|344774_345578_-|inositol-1-monophosphatase
MNPMLNIAIRAARKAGNVIAKGYERRDALQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPIRNELFTAVRGEGAKINDMRLRVENKRDLAGTVLTTGFPFKQTRLMPMQFAMMNNLIQDCADFRRMGSAALDLCYVAAGRVDGYFEVGVKAWDIAAGDLIVREAGGLVCDFNGGHSYLTSGHLVAAAPRIVKEILNKIQPCLSDEFKK
>CP029712.1|AWW51189.1|345791_346508_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIALSAGAEDVLKQAKIVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTHAIVYAKQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTHTEIEHFFQHTERLYTALGFIQNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKRLK
>CP029712.1|AWW51190.1|346586_347051_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRGPGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRGDCQEGTECLTHSLWKELSLRIEAFLNEITLEELVEKNRQKRATIEFRGDFDNLIILDN
>CP029712.1|AWW51191.1|347098_348313_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNHIADLIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVDATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNLNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRYTTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH
>CP029712.1|AWW51192.1|348544_348931_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSNKVIDHYENPRNVGSLDKKDANVGTGMVGAPACGDVMQLQIKVSEEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDEAQAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKKEAK
>CP029712.1|AWW51193.1|349000_349324_+|iron-sulfur-cluster-assembly-protein-IscA
MGISLTETAADRVRTFLANRGKGIGLRLGIKTSGCSGLAYVLEFVDELNPEDQVFEQHGVKIIVDAKSLVYLDGTELDFAKEGLNEGFKFNNPNVKDQCGCGESFHV

Crispr_ID: CP029712_2

• CRISPR_ID: CP029712_2
• CRISPR_location: 1546622-1546949
• CRISPR_type: Unclear
• Repeat_type: I-F
• Spacer_info: 5 spacers
• Cas_protein_info: cas3

Consensus repeat of CP029712_2

Consensus_repeat	Method
TTTCTAAGCTGCCTACACGGCAGTTAAC	CRISPRCasFinder
TTTCTAAGCTGCCTANACGGCAGTTAAC	CRT
TTTCTAAGCTGCCTACACGGCAGTTAAC	PILER-CR

spacers of CP029712_2

>2.1|1546650|32|CP029712|CRISPRCasFinder,CRT
ACCAATCTGATAATCGAGCCAAGATCGCTTTA
>2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR
AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
>2.3|1546770|32|CP029712|CRISPRCasFinder,CRT,PILER-CR
AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
>2.4|1546830|32|CP029712|CRISPRCasFinder,CRT,PILER-CR
GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
>2.5|1546890|32|CP029712|CRISPRCasFinder,CRT,PILER-CR
TTGATCCTTTTACGCGTAAACAGAATGCTTTT

CRISPR arrays and Neighbor proteins around CP029712_2

CRISPR arrays

The CRISPR arrays of CP029712_2

>merge|CP029712|2|1546622-1546949|CRISPRCasFinder,CRT,PILER-CR
AATTGAAACTGCCTATACGGCAGTTAACACCAATCTGATAATCGAGCCAAGATCGCTTTATTTCTAAGCTGCCTACACGGCAGTTAACAAGAGCAGAAAACAGAAGAATTGGAAGATGACTTTCTAAGCTACCTACACGGCAGTTAACAGTGTAATTCCGCTCCGTTGCTTAAAATAATCTTTCTAAGCTGCCTACACGGCAGTTAACGTATGAGTTCGGCATTTGCAGAGCTTAAAGCTTTTCTAAGCTGCCTACACGGCAGTTAACTTGATCCTTTTACGCGTAAACAGAATGCTTTTTTTCTAAGCTGCCTATACGGCAGTTAAC

>CP029712|2|2|1546622-1546949|CRISPRCasFinder
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC

>CP029712|2|1|1546622-1546949|CRT
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC

>CP029712|2|1|1546682-1546949|PILER-CR
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029712.1|AWW52200.1|1556447_1557116_+|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl|CDD|380324
CP029712.1|AWW52189.1|1544085_1544493_+|copper-chaperone-PCu(A)C	unknown	unknown	gnl|CDD|225403
CP029712.1|AWW52911.1|1538897_1539824_+|aminoimidazole-riboside-kinase	unknown	unknown	gnl|CDD|236514
CP029712.1|AWW52194.1|1549325_1550030_-|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl|CDD|225742
CP029712.1|AWW52183.1|1534760_1536347_-|L-lactate-permease	unknown	unknown	gnl|CDD|224535
CP029712.1|AWW52185.1|1538100_1538712_-|lysogenization-regulator-HflD	unknown	unknown	gnl|CDD|225467
CP029712.1|AWW52192.1|1547124_1548453_-|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl|CDD|236877
CP029712.1|AWW52201.1|1557211_1557547_-|XRE-family-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
CP029712.1|AWW52196.1|1553289_1553949_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl|CDD|236659
CP029712.1|AWW52188.1|1542545_1543970_+|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl|CDD|131051
CP029712.1|AWW52191.1|1545604_1546570_+|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl|CDD|236809
CP029712.1|AWW52187.1|1541329_1542349_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|131470
CP029712.1|AWW52184.1|1536705_1538073_-|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|236452
CP029712.1|AWW52193.1|1548564_1549278_+|tRNA-(adenosine(37)-N6)-methyltransferase-TrmM	unknown	unknown	gnl|CDD|226608
CP029712.1|AWW52195.1|1550305_1553209_+|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl|CDD|235319
CP029712.1|AWW52190.1|1544561_1545608_+|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl|CDD|182835
CP029712.1|AWW52198.1|1554587_1555016_+|DUF2489-domain-containing-protein	unknown	unknown	gnl|CDD|378470
CP029712.1|AWW52199.1|1555039_1556407_+|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl|CDD|236430
CP029712.1|AWW52197.1|1554012_1554582_+|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl|CDD|367878
CP029712.1|AWW52186.1|1539861_1541304_+|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl|CDD|224536

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP029712.1|AWW52192.1|1547124_1548453_-|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	3.1e-12	40.9	0.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029712.1|AWW52200.1|1556447_1557116_+|NAD(P)H-dependent-oxidoreductase	gnl|CDD|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	3.45531e-76
CP029712.1|AWW52189.1|1544085_1544493_+|copper-chaperone-PCu(A)C	gnl|CDD|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	1.12449e-42
CP029712.1|AWW52911.1|1538897_1539824_+|aminoimidazole-riboside-kinase	gnl|CDD|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0
CP029712.1|AWW52194.1|1549325_1550030_-|nicotinamide-riboside-transporter-PnuC	gnl|CDD|225742	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism].	5.27246e-73
CP029712.1|AWW52183.1|1534760_1536347_-|L-lactate-permease	gnl|CDD|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	6.14413e-167
CP029712.1|AWW52185.1|1538100_1538712_-|lysogenization-regulator-HflD	gnl|CDD|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	9.09394e-109
CP029712.1|AWW52192.1|1547124_1548453_-|ATP-dependent-RNA-helicase-SrmB	gnl|CDD|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
CP029712.1|AWW52201.1|1557211_1557547_-|XRE-family-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.65249e-05
CP029712.1|AWW52196.1|1553289_1553949_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl|CDD|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	6.19774e-102
CP029712.1|AWW52188.1|1542545_1543970_+|PTS-maltose-transporter-subunit-IIBC	gnl|CDD|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
CP029712.1|AWW52191.1|1545604_1546570_+|lipopolysaccharide-heptosyltransferase-RfaC	gnl|CDD|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
CP029712.1|AWW52187.1|1541329_1542349_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
CP029712.1|AWW52184.1|1536705_1538073_-|adenylosuccinate-lyase	gnl|CDD|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
CP029712.1|AWW52193.1|1548564_1549278_+|tRNA-(adenosine(37)-N6)-methyltransferase-TrmM	gnl|CDD|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.77606e-93
CP029712.1|AWW52195.1|1550305_1553209_+|RNA-polymerase-associated-protein-RapA	gnl|CDD|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP029712.1|AWW52190.1|1544561_1545608_+|lipopolysaccharide-heptosyltransferase-II	gnl|CDD|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
CP029712.1|AWW52198.1|1554587_1555016_+|DUF2489-domain-containing-protein	gnl|CDD|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	1.12596e-47
CP029712.1|AWW52199.1|1555039_1556407_+|oxygen-independent-coproporphyrinogen-III-oxidase	gnl|CDD|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
CP029712.1|AWW52197.1|1554012_1554582_+|Der-GTPase-activating-protein-YihI	gnl|CDD|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	8.55528e-59
CP029712.1|AWW52186.1|1539861_1541304_+|glycoside-hydrolase-family-32-protein	gnl|CDD|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	1.07246e-174

Protein sequences

>CP029712.1|AWW52191.1|1545604_1546570_+|lipopolysaccharide-heptosyltransferase-RfaC
MKICLIKTSSMGDILHSLPALTDAQRALPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTMPYVLFFHGTTRQDKFLPDKQWRTLAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQHYLVAESMDKIEADEIFQKLTALLSLNTI
>CP029712.1|AWW52190.1|1544561_1545608_+|lipopolysaccharide-heptosyltransferase-II
MHILIIGPSWVGDMMMSHSLYQTLKQQYPQCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGAFALGDRYRLGKALRHQYDMAIVLPNSLKSAFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPITQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYAIRLFGSAKDEAVGEEIRQALPETMRHFCINLAGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAVIIRLIEDGLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>CP029712.1|AWW52189.1|1544085_1544493_+|copper-chaperone-PCu(A)C
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDIRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNAGDSFPLRLLFDNGEIMHIEAKIIQY
>CP029712.1|AWW52188.1|1542545_1543970_+|PTS-maltose-transporter-subunit-IIBC
MNFSQIAQQVIDKLGGKDNISAAAHCATRLRIVVKNENLIDKKGIENIEGVKGQFAVAGQYQIIFGSGTVNKVYAELSKLLGIGDMTTSEVAAAGTEKQGLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAKGFFVEEKNVVDLYPAIADLVDFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALSDGWNYALTLTKGNIQYWHIFGLEIERVGYQGTVIPVLVASWVLATLEKNLRKVVPSFLDNLITPLFALFITGLLAFTVIGPIGREAGSLISTGLTWLYDTLGFVGGAIFGTLYAPIVITGMHQTFIAVETQLLAEVARTGGTFIFPIAAMSNIAQGAACLGAAYVMKDAKVRGIGVPSGISALLGITEPAMFGVNLRYRYPFISAMIGAGISSAVIALFNVKAIALGAAGLPGIPSIKPDSLAMYCVGMLISASIAFTLTVILGKRAQLKAE
>CP029712.1|AWW52187.1|1541329_1542349_+|LacI-family-DNA-binding-transcriptional-regulator
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIITCSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITALICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCDVIYRD
>CP029712.1|AWW52186.1|1539861_1541304_+|glycoside-hydrolase-family-32-protein
MYIFNQGKYKSLHAQEVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFITYDFHHFQAADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFSAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPTDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYAQCLPVHKYWVEGKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>CP029712.1|AWW52911.1|1538897_1539824_+|aminoimidazole-riboside-kinase
MGKIWVLGDAVVDLIPEGENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQLTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVVNQVVALADVLKFSEEELLFLTDSDTLSDATAKLTQHYPDKLIIVTLGKLGATYYLQGKSQLISSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKQANACGALATTAKGAMSALPNKQQLDAFLAE
>CP029712.1|AWW52185.1|1538100_1538712_-|lysogenization-regulator-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHDDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>CP029712.1|AWW52184.1|1536705_1538073_-|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAERIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>CP029712.1|AWW52183.1|1534760_1536347_-|L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGTKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY
>CP029712.1|AWW52192.1|1547124_1548453_-|ATP-dependent-RNA-helicase-SrmB
MTLATFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTDPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAPKEGEVKTVSKKQKARIKAKREEKQKQEQKKKVKLRHKDTKNIGKRRKSNTPPANAE
>CP029712.1|AWW52193.1|1548564_1549278_+|tRNA-(adenosine(37)-N6)-methyltransferase-TrmM
MSAKQNGFTFKQFHIEHHRCAMKVGTDGILLGAWADVSQAERILDLGTGTGLIALMLAQRSTKESEIHAVELDQAAYLQAQANIHASPWAQRVHVYQQDAAEFCRNAVNKFDLIVANPPYFPQGVDCATPQRDLARYTATHRHVDWLNWASHCLSEQGKISMVLPFEAGETLLKQTALYCIARCEVITKKGKAPQRLLLTFSLQAQPLQPSQLIIYDESNRYHPDFIGLTKDFYLAF
>CP029712.1|AWW52194.1|1549325_1550030_-|nicotinamide-riboside-transporter-PnuC
MNLQAVKNEFLGGWKPFEVAWLSLFLIAQIVIYIQNPDSILGMISGISGILCVVFVSKGKVSNYFFGLIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLKGWAIVLGTITIGTLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIALNVISIVLWTQAKEGSLAMVTMYSAYLLNSLYGYYNWTKLEKAHRQSVQ
>CP029712.1|AWW52195.1|1550305_1553209_+|RNA-polymerase-associated-protein-RapA
MTFAVGQRWMSESENNLGLGLIVAIDMRTVTILFPASEEQRIYALNSAPLTRVLFQIGDEIVHHEGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEHFTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTIEAGMILQQQLFAEKVERVLIIVPETLQHQWLVEMLRRFNLHFALFDEERCADFEDPASALWINPFSTESQIICALDWLCEKPKRVEQLLEAGFDMLIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRFYDYQAFVQEQQQYQPVADAVQSLLADKPLSTVEKNHIADLLSEQDVEPMLKVIDSQAHDEQKALARQELIDNLIDRHGTSRVLFRNTRQGVKSFPHRTYNQITLELPKQYNNAANVLAMLGEKSENDSFYPEQMFQKLNPDARWWEFDPRLAWLITFLKNHREEKVLVICRHANTAIQLEQALREKEAIRAAVFHEKLSIVERDRAAAYFAQQEDGAQVLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQSRDIQIHVPCFADTAQVVLARWYHEGLNAFEETCPMGMTLFETHQTQLNKFLQKPTALEGFAEFVSLTRKQQHELKQALEKGRDRLLELNSNGGEQAQQLATDIAEQDSTTELVNFTLNLFDIIGVDQEDLGEKSIVITPASNMLVPDFPGLKEEGATVTFDRQLSLAREDVEFMSWDHPLIRHGIDLITSGDIGKSAVSLLINKALPAGTLLLEMIYVVEAQAPKGLQLTRFLPPTPIRLLLDQKGNNLAEQVSFNALQKQLKPIGKNMANKVVKMVRPNIEQLVKLSEQKIVAQAQQIIHNTQQLADQTLSAELNRLTALQAVNKNIRQDEVDALENIRSQSLAQLQQATWRLDSLRVIVSNKE
>CP029712.1|AWW52196.1|1553289_1553949_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MALISYTPPTDPYLDIVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPAHRLDMSTSGLILFALSKAADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKFYAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF
>CP029712.1|AWW52197.1|1554012_1554582_+|Der-GTPase-activating-protein-YihI
MARKKKTRRVSDIMPARKVDKKVELPKGKPGKKLTRYELDAKAREDKKKKKRKGLASGSRHSATENNNKHQALEKKDPRIGSRKKVPLVVEFVNKPEKGMTIPPMKLEEKLPKQDPMLELELLESNECLNQLLDDLEAGKTLSAEDQQFVDDCLDRIAELMDELGISEDDDPEEDLLRTFEKIDINQFR
>CP029712.1|AWW52198.1|1554587_1555016_+|DUF2489-domain-containing-protein
MWTNILLILAVLVIVAMASYAGYLLLALQKQKKAIANMRTARSQRLTESIVIIAKAMQNGDCNHSEGVIRLKMLLDPLGKKLKNYQAMYQLYEVVMEMPTHEKRRELKKNERMRLDLQRESAEAELEQKIRLELQQLLIDMK
>CP029712.1|AWW52199.1|1555039_1556407_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSDIVWDLALIQKYNQSGPRYTSYPTALEFNENYTNQDFIQATKRYPNRPLSLYVHIPFCHKLCYFCACNKTITRHQHKADIYLDFLEREIENRASLFKNRIATQVHWGGGTPTYLTEQQSARLMAMLRKHFTIAPDAEISIEMDPREIELNMLDHLRRIGFNRMSMGVQDFNKDVQKAINRVQDEDFIEALLKRARELGFQSTNLDLIYGLPLQNVDSFMFTLQKVIALNPDRLSVFNYAHLPSRFAGQAKIKNEQLPAPETKLTILQKMIETLGDAGYKFIGMDHFAKPDDELAIAQKQGVLHRNFQGYTTQEECDLLGLGVSAISLLGDTYAQNQKELKHYYTAIDNTGIALHKGFAMSEEDCLRRDVIKQLICNFKLDYQPIEQQYGIQFTSHFAEDLKLLAPLSEDGLLTIGEKDIQVSAKGRLLIRNICLCFDTYSREQAKRQQFSRII
>CP029712.1|AWW52200.1|1556447_1557116_+|NAD(P)H-dependent-oxidoreductase
MSISKTDILNAFHFRHACKAYDPSKKISEEDFRFILETGRLSPSSFGFEPWKFLVIENPDIKALIRDTAWGAKDKVMDCSHFVVVLVRQPETLLADGEYVQHMMRDIHHIPEEMRKIRQNFYRTFSEQDFALTENPKAFYDWACRQSYIALANMLTSAAMIGIDSTPIEGFPLEKMDHIFVEQGLYDPKTYKLSVMIAFGYRLNEPKAKTRQAFDDVVEWVR
>CP029712.1|AWW52201.1|1557211_1557547_-|XRE-family-transcriptional-regulator
MQITRRNASTKGASVAEIDRKKVRNEIIQAMLMGELSQGEALRKLRIEMFGINQQHYIQLVKVSRQTLSNIENDKGNYSVETINKVFKPFGLELGLVPVSKALLKELFSTA

Crispr_ID: CP029712_3

• CRISPR_ID: CP029712_3
• CRISPR_location: 2296292-2296802
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 7 spacers

Consensus repeat of CP029712_3

Consensus_repeat	Method
GTTCACCATCGTGTAGATGGCTTAGAAA	CRISPRCasFinder
TGTTCACCATCGTGTAGATGGCTTAGAAAAAA	PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	CRT

spacers of CP029712_3

>3.1|2296320|32|CP029712|CRISPRCasFinder
GGATCGATGATTGCTAGCAAGTAATCTTTGAT
>3.2|2296380|32|CP029712|CRISPRCasFinder
TTCCGATTTTTGATAGTCAAAGACTACTGAGT
>3.3|2296440|64|CP029712|CRISPRCasFinder
AAATGTTCACCATCGTGTAGATGGCTTAGAAAAAACGGTCGTGCGTCGTTCGGGTTGTGATCTT
>3.4|2296532|32|CP029712|CRISPRCasFinder
GAAACACTAGAAGATTTAACGGTCATTGAAAA
>3.5|2296592|63|CP029712|CRISPRCasFinder
ACTGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACGTGTTCAACTAACGGCTGACAATC
>3.6|2296683|32|CP029712|CRISPRCasFinder,PILER-CR,CRT
CACAACATGTGCTGAAAGTGCGTGAGATTTGA
>3.7|2296743|32|CP029712|CRISPRCasFinder,PILER-CR,CRT
TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
>3.8|2296383|31|CP029712|PILER-CR
TTCCGATTTTTGATAGTCAAAGACTACTGAG
>3.9|2296446|60|CP029712|PILER-CR
TGTTCACCATCGTGTAGATGGCTTAGAAAAAACGGTCGTGCGTCGTTCGGGTTGTGATCT
>3.10|2296623|32|CP029712|PILER-CR,CRT
ATAATGACGTGTTCAACTAACGGCTGACAATC

CRISPR arrays and Neighbor proteins around CP029712_3

CRISPR arrays

The CRISPR arrays of CP029712_3

>merge|CP029712|3|2296292-2296802|CRISPRCasFinder,PILER-CR,PILER-CR,CRT
GTTCACCATCGTGTAGATGGCTTAGAAAGGATCGATGATTGCTAGCAAGTAATCTTTGATGTTCACCATCGTGTAGATGGCTTAGAAATTCCGATTTTTGATAGTCAAAGACTACTGAGTGTTCACCATCGTGTAGATGGCTTAGAAAAAATGTTCACCATCGTGTAGATGGCTTAGAAAAAACGGTCGTGCGTCGTTCGGGTTGTGATCTTGTTCACCATCGTGTAGATGGCTTAGAAAGAAACACTAGAAGATTTAACGGTCATTGAAAAGTTCACCATCGTGTAGATGGCTTAGAAAACTGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACGTGTTCAACTAACGGCTGACAATCGTTCACCATCGTGTAGATGGCTTAGAAACACAACATGTGCTGAAAGTGCGTGAGATTTGAGTTCACCATCGTGTAGATGGCTTAGAAATACCCGATGTTAGAGGCAATCAAAGTGGAGCTGTTCACCATCGTGTAGATGGCTTAGAAA

>CP029712|3|3|2296292-2296802|CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	GGATCGATGATTGCTAGCAAGTAATCTTTGAT
GTTCACCATCGTGTAGATGGCTTAGAAA	TTCCGATTTTTGATAGTCAAAGACTACTGAGT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAATGTTCACCATCGTGTAGATGGCTTAGAAAAAACGGTCGTGCGTCGTTCGGGTTGTGATCTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ACTGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA

>CP029712|3|2|2296351-2296534|PILER-CR
TGTTCACCATCGTGTAGATGGCTTAGAAATTC	CGATTTTTGATAGTCAAAGACTACTGAGTGT
TCACCATCGTGTAGATGGCTTAGAAAAAATGT	TCACCATCGTGTAGATGGCTTAGAAAAAACGGTCGTGCGTCGTTCGGGTTGTGATCTTGT
TCACCATCGTGTAGATGGCTTAGAAAGAAACACTAGAAGATTTAACGGTCATTGAAAAGTTCACCATCGTGTAGATGGCTTAGAAAACTGTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT


>CP029712|3|3|2296595-2296802|PILER-CR
	CGATTTTTGATAGTCAAAGACTACTGAGTGT
TCACCATCGTGTAGATGGCTTAGAAAAAATGT	TCACCATCGTGTAGATGGCTTAGAAAAAACGGTCGTGCGTCGTTCGGGTTGTGATCTTGT
TCACCATCGTGTAGATGGCTTAGAAAGAAACACTAGAAGATTTAACGGTCATTGAAAAGTTCACCATCGTGTAGATGGCTTAGAAAACTGTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA

>CP029712|3|2|2296595-2296802|CRT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029712.1|AWW52868.1|2276468_2277311_+|beta-1,4-galactosyltransferase	unknown	unknown	gnl|CDD|225843
CP029712.1|AWW52875.1|2284847_2285078_-|hypothetical-protein	unknown	unknown	unknown
CP029712.1|AWW52869.1|2277340_2278354_+|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|132997
CP029712.1|AWW52871.1|2279267_2280446_-|glycosyltransferase	unknown	unknown	gnl|CDD|340839
CP029712.1|AWW52874.1|2284094_2284274_-|hypothetical-protein	unknown	unknown	unknown
CP029712.1|AWW52876.1|2285463_2285694_-|hypothetical-protein	unknown	unknown	unknown
CP029712.1|AWW52873.1|2283468_2284092_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|172294
CP029712.1|AWW52870.1|2278362_2279271_+|glycosyltransferase-family-8-protein	unknown	unknown	gnl|CDD|133037
CP029712.1|AWW52872.1|2280601_2282815_+|primosomal-protein-N'	unknown	unknown	gnl|CDD|235514
CP029712.1|AWW52929.1|2286074_2286257_+|hypothetical-protein	unknown	unknown	unknown
CP029712.1|AWW52877.1|2297037_2297502_-|IS200/IS605-family-transposase	unknown	unknown	gnl|CDD|376616

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029712.1|AWW52868.1|2276468_2277311_+|beta-1,4-galactosyltransferase	gnl|CDD|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	1.85966e-73
CP029712.1|AWW52873.1|2283468_2284092_+|TetR-family-transcriptional-regulator	gnl|CDD|172294	PRK13756, PRK13756, TetR family transcriptional regulator.	4.95783e-140
CP029712.1|AWW52869.1|2277340_2278354_+|glycosyltransferase-family-2-protein	gnl|CDD|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	6.84569e-35
CP029712.1|AWW52871.1|2279267_2280446_-|glycosyltransferase	gnl|CDD|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	2.53389e-92
CP029712.1|AWW52877.1|2297037_2297502_-|IS200/IS605-family-transposase	gnl|CDD|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	5.24801e-42
CP029712.1|AWW52872.1|2280601_2282815_+|primosomal-protein-N'	gnl|CDD|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
CP029712.1|AWW52870.1|2278362_2279271_+|glycosyltransferase-family-8-protein	gnl|CDD|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	8.86752e-87

Protein sequences

>CP029712.1|AWW52929.1|2286074_2286257_+|hypothetical-protein
MEATLKYHPLTFDVLTKCLKRVLGQCLVGSLTGAVSSQSVTEEHEGLLMTVGHRQVSAMV
>CP029712.1|AWW52876.1|2285463_2285694_-|hypothetical-protein
MQPAGIFDLLHLHPRGTTITVSAPSPEVTVLFCLVPSPEFSQAPEYSLPDHLCRFSVRFRWNDCKCSHRLFSRLYE
>CP029712.1|AWW52875.1|2284847_2285078_-|hypothetical-protein
MLRSQRRGRDPPCWLSEKEPLVGKRRVNFQRCWLPVSRIGLHRRGVERVNCGPKLLDLGEKGVYSSYTSPRWDLNP
>CP029712.1|AWW52874.1|2284094_2284274_-|hypothetical-protein
MFIEPDSPLQLGSLMPENGVIFSDGIEDDYLQFNAGCIAHIGIADIQGQLISQKGRQRI
>CP029712.1|AWW52873.1|2283468_2284092_+|TetR-family-transcriptional-regulator
MAKLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAETILQKHHHHVLPLPNETWQDFLRNNAKSFRQALLMYRDGGKIHAGTRPSESQFETSEQQLQFLCDAGFSLSQAVYALSSIAHFTLGSVLETQEHQESQKEREKVETDTVAYPPLLTQAVAIMDSDNGDAAFLFVLDVMISGLETVLKSAK
>CP029712.1|AWW52872.1|2280601_2282815_+|primosomal-protein-N'
MQLIRVALAVPLYRFFDYLLPPELDAVIGGRVVVPFGRQQRVGIVVALPVETEVETAQLKSVIEVLDTQSVFNQDMWQLLHWAAGYYQTALGEVLFQALPVKLRQGESAVEKAKIFWQLTECGLQALAQHTDSGEFKRAKKQLEVLIALSQTPLEKGNNPFNSAIFSTLKQKDYVEDVEVQPQLHAWQTDFTDKPMVNDENRLRLNKQQALAFSQLVFHQGFAVWLLDGVTGSGKTEIYLQLIEEVLKKGKQILVLVPEIGLTPQTVQRFAARFQVVIDVLHSNLNDTQRLAVWQRARTGQSAVVIGTRSALFTQFADLGLIVIDEEHDASFKQQDNFRYHARDLSVVLAKQLNIPVLMGSATPSLESLNNVHNGKYRHIILSNRAGNAALLRHSVIDLKQQVVRNGLSEALLQRMEKHLQKGNQVLLFLNRRGFAPVMLCHECGWIAECQHCEKPYTYHQHQRALRCHHCAAQKPIPRQCGHCGSTHLITTGLGTEQLEQTLASRFPQYQITRIDRDSTARKGKLEDYLTDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEERLAQLYVQVAGRAGRVEKQGEVVLQTHYPDHPLLQRLLQQGYADFAEYALQLRQKMGLPPFSAQALFKAQSRHSEDAEQVLQQVAEYFYTWNQSSQCAIQILGPIAAPFSKKAGQYRWQLLLQHPSRAQLHHALSAFQATSTIKFGSVRCVLDVDPIDLN
>CP029712.1|AWW52871.1|2279267_2280446_-|glycosyltransferase
MNILFVHKSLVVGGAERILINYLNILSGFNEFKVTLLLLENKGEDNKNINQINKNINIDFILDNSESRKYTEFENKINQRSIFRKIYKYKLSKINKIEENRIKKYIKNKEFDLIVNFNSHLDFFLSNNQINIPIIRWIHGQAHLDDWCNRREWYQNILPKHTYFFAITKEMQKNAQKILLSYGIQEERIHILYNPIDINFIQEQSIKNTHDIHHKQYLINVSRLDIDKNHEQMINIYYQLKKRGIQEKLYIVWDGECREKLEKQIESLNLQEDCFLLGNKDNPYPLIKNAKLFLHTSLKEGLPTVILESMACGTPVISMDCPTGPKEILRGGEFGGLVNLGDENAFIQKTLSFLQNQDEYNHYCNKLEQAISPFRFEEISTILLSHLQKFNS
>CP029712.1|AWW52870.1|2278362_2279271_+|glycosyltransferase-family-8-protein
MNILFVSDDVYAKHLVVAIKSIINHNEKGISFYIFDLGIKDENKRNINDIVSSYGSEVNFIAVNEKEFESFPVQISYISLATYARLKAAEYLPDNLNKIIYLDVDVLVFNSLEMLWNVDVNNFLTAACYDSFIENEKSEHKKSISMSDKEYYFNAGVMLFNLDEWRKMDVFSRALDLLAMYPNQMIYQDQDILNILFRNKVCYLDCRFNFMPNQLERIKQYHKGKLSNLHSLEKTTMPVVISHYCGPEKAWHADCKHFNVYFYQKILAEITRGTDKERVLSIKTYLKALIRRIRYKFKYQVY
>CP029712.1|AWW52869.1|2277340_2278354_+|glycosyltransferase-family-2-protein
MSYLDQPLVSVLICAYNADKYIEECIDAILNQTYKNLEIVVVNDGSTDTTLSKLHYFAEKDPRIKIINNEENKGFIVSLNIGISSINGDYLARTDADDITKPEWIEKILGYMLSHPQIIAMGSYLTILSEDGNGSNLANYYEYGDEWRNPLSHREIVEAMLFRNPIHNNSMIVKSTVFREHGLRFDPAYQHTEDYQFWLEVSRLGELANYPESLVYYRLHNTQTSSLHNKYQNLMAKKIRKRAINYYLQDLGIIHRLGEDIFFHDIKTIQAELASLSLLDNCIIKRILYDCYLSLVDNKLINILYFLRDKNNSYFNRKQKIKIIKRIIRPYKYESVL
>CP029712.1|AWW52868.1|2276468_2277311_+|beta-1,4-galactosyltransferase
MPMTNYVISLSSARERRQHVMNEFSKHHVPFQFFDAVSPSSQLDFLIQRLVPNLNGTSLTGGEKGCLISHVALWHKCIQDNLPYIAIFEDDILLGRDARAFLAEDEWLFSRFNCDDIFIIRLETFLQETICEALPNPVSYCGRDFLALKDEHLGTAGYIISLGAAKYLLEIFKNMESNNIFPIDHLIFNRFLAGEELMVYQLSPALCIQELQLNENESLLDSQLESERKNYRLAEKARNKKTWREKVYHIFTKPQRMLKKRKERAEKNAKMKLKCIVKFE
>CP029712.1|AWW52877.1|2297037_2297502_-|IS200/IS605-family-transposase
MASKSNDDSSLSHTRWNCKYHIVFIPKYRRKAIYGKLRVDIGGILRQLCHYKNVEIIEAYAMKEHIHMLLRIPPKLAVSSFMGYLKGKSSLMIFERHANLKYKYGNRNFWAKGYYVSTVGLNTKIVEEYIRNQEKEDMIQDNLSKKEYMDPFKG

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029712_3	3.1|2296320|32|CP029712|CRISPRCasFinder	2296320-2296351	32	NC_008193	Pasteurella phage F108, complete genome	19962-19993	0	1.0
CP029712_3	3.1|2296320|32|CP029712|CRISPRCasFinder	2296320-2296351	32	DQ114220	Bacteriophage F108, complete genome	19962-19993	0	1.0
CP029712_2	2.1|1546650|32|CP029712|CRISPRCasFinder,CRT	1546650-1546681	32	MH238467	Pasteurella phage Pm86, complete genome	42601-42632	1	0.969
CP029712_2	2.4|1546830|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546830-1546861	32	MH238466	Pasteurella phage AFS-2018a, complete genome	23770-23801	1	0.969
CP029712_2	2.3|1546770|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546770-1546801	32	NC_008193	Pasteurella phage F108, complete genome	11445-11476	2	0.938
CP029712_2	2.3|1546770|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546770-1546801	32	DQ114220	Bacteriophage F108, complete genome	11445-11476	2	0.938
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_KX086582	Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence	25794-25825	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_KF831355	Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence	23170-23201	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_AP018563	Staphylococcus argenteus strain 58113 plasmid p1, complete sequence	18411-18442	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NC_013327	Staphylococcus aureus plasmid pWBG749, complete sequence	26168-26199	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	CP030569	Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence	12940-12971	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	CP030458	Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence	15652-15683	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_AP017923	Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence	17835-17866	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NC_013325	Staphylococcus aureus plasmid pWBG745, complete sequence	13088-13119	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	CP030696	Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence	28191-28222	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	CP030710	Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence	7547-7578	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_CP012757	Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence	37721-37752	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_CP042004	Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence	11471-11502	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_CP047857	Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence	26882-26913	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	9160-9191	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_MH587575	Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence	17922-17953	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	17842-17873	6	0.812
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	CP030603	Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence	34556-34587	6	0.812
CP029712_3	3.10|2296623|32|CP029712|PILER-CR,CRT	2296623-2296654	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	465830-465861	7	0.781
CP029712_3	3.10|2296623|32|CP029712|PILER-CR,CRT	2296623-2296654	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	650120-650151	7	0.781
CP029712_3	3.10|2296623|32|CP029712|PILER-CR,CRT	2296623-2296654	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1110688-1110719	7	0.781
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	MK905543	Vibrio phage USC-1, complete genome	55483-55514	8	0.75
CP029712_2	2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR	1546710-1546741	32	MK358448	Vibrio phage 5, complete genome	209261-209292	8	0.75
CP029712_3	3.2|2296380|32|CP029712|CRISPRCasFinder	2296380-2296411	32	NZ_MF770238	Aeromonas sobria strain JF2635 plasmid pJF2635-1, complete sequence	1753-1784	8	0.75
CP029712_3	3.4|2296532|32|CP029712|CRISPRCasFinder	2296532-2296563	32	MN694758	Marine virus AFVG_250M853, complete genome	27038-27069	8	0.75
CP029712_3	3.4|2296532|32|CP029712|CRISPRCasFinder	2296532-2296563	32	MN694774	Marine virus AFVG_250M941, complete genome	26488-26519	8	0.75
CP029712_3	3.4|2296532|32|CP029712|CRISPRCasFinder	2296532-2296563	32	MN694077	Marine virus AFVG_250M852, complete genome	27041-27072	8	0.75
CP029712_3	3.4|2296532|32|CP029712|CRISPRCasFinder	2296532-2296563	32	MN693487	Marine virus AFVG_25M100, complete genome	6473-6504	8	0.75
CP029712_3	3.4|2296532|32|CP029712|CRISPRCasFinder	2296532-2296563	32	MN694586	Marine virus AFVG_250M370, complete genome	8206-8237	8	0.75
CP029712_3	3.8|2296383|31|CP029712|PILER-CR	2296383-2296413	31	NZ_CP009919	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence	31215-31245	9	0.71
CP029712_3	3.8|2296383|31|CP029712|PILER-CR	2296383-2296413	31	NZ_CP035096	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence	3106-3136	9	0.71
CP029712_3	3.2|2296380|32|CP029712|CRISPRCasFinder	2296380-2296411	32	NZ_CP009919	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence	31214-31245	10	0.688
CP029712_3	3.2|2296380|32|CP029712|CRISPRCasFinder	2296380-2296411	32	NZ_CP035096	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence	3106-3137	10	0.688
CP029712_3	3.4|2296532|32|CP029712|CRISPRCasFinder	2296532-2296563	32	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	5680-5711	10	0.688
CP029712_3	3.4|2296532|32|CP029712|CRISPRCasFinder	2296532-2296563	32	GU943040	Uncultured phage MedDCM-OCT-S09-C28 genomic sequence	16896-16927	10	0.688

1. spacer 3.1|2296320|32|CP029712|CRISPRCasFinder matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 0, identity: 1.0

ggatcgatgattgctagcaagtaatctttgat	CRISPR spacer
ggatcgatgattgctagcaagtaatctttgat	Protospacer
********************************

2. spacer 3.1|2296320|32|CP029712|CRISPRCasFinder matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 0, identity: 1.0

ggatcgatgattgctagcaagtaatctttgat	CRISPR spacer
ggatcgatgattgctagcaagtaatctttgat	Protospacer
********************************

3. spacer 2.1|1546650|32|CP029712|CRISPRCasFinder,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

accaatctgataatcgagccaagatcgcttta	CRISPR spacer
accaatctgataatcgagccaaaatcgcttta	Protospacer
**********************.*********

4. spacer 2.4|1546830|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 1, identity: 0.969

gtatgagttcggcatttgcagagcttaaagct	CRISPR spacer
gcatgagttcggcatttgcagagcttaaagct	Protospacer
*.******************************

5. spacer 2.3|1546770|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

6. spacer 2.3|1546770|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

7. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX086582 (Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

8. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF831355 (Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

9. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018563 (Staphylococcus argenteus strain 58113 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

10. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NC_013327 (Staphylococcus aureus plasmid pWBG749, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

11. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to CP030569 (Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

12. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to CP030458 (Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

13. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017923 (Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

14. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NC_013325 (Staphylococcus aureus plasmid pWBG745, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

15. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to CP030696 (Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

16. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to CP030710 (Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

17. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012757 (Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

18. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042004 (Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

19. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047857 (Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

20. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012594 (Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

21. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587575 (Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

22. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

23. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to CP030603 (Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

24. spacer 3.10|2296623|32|CP029712|PILER-CR,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  ** 

25. spacer 3.10|2296623|32|CP029712|PILER-CR,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  ** 

26. spacer 3.10|2296623|32|CP029712|PILER-CR,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  ** 

27. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

28. spacer 2.2|1546710|32|CP029712|CRISPRCasFinder,CRT,PILER-CR matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

29. spacer 3.2|2296380|32|CP029712|CRISPRCasFinder matches to NZ_MF770238 (Aeromonas sobria strain JF2635 plasmid pJF2635-1, complete sequence) position: , mismatch: 8, identity: 0.75

ttccgatttttgatagtcaaagactactgagt	CRISPR spacer
ctccacggcttgatactcaaagactacttagt	Protospacer
.***.   .****** ************ ***

30. spacer 3.4|2296532|32|CP029712|CRISPRCasFinder matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

31. spacer 3.4|2296532|32|CP029712|CRISPRCasFinder matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

32. spacer 3.4|2296532|32|CP029712|CRISPRCasFinder matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

33. spacer 3.4|2296532|32|CP029712|CRISPRCasFinder matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

34. spacer 3.4|2296532|32|CP029712|CRISPRCasFinder matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

35. spacer 3.8|2296383|31|CP029712|PILER-CR matches to NZ_CP009919 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence) position: , mismatch: 9, identity: 0.71

ttccgatttttgatagtcaaagactactgag	CRISPR spacer
gcttcatttttgatagtcatagacaactgga	Protospacer
 ... ************** **** ****..

36. spacer 3.8|2296383|31|CP029712|PILER-CR matches to NZ_CP035096 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

ttccgatttttgatagtcaaagactactgag	CRISPR spacer
gcttcatttttgatagtcatagacaactgga	Protospacer
 ... ************** **** ****..

37. spacer 3.2|2296380|32|CP029712|CRISPRCasFinder matches to NZ_CP009919 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence) position: , mismatch: 10, identity: 0.688

ttccgatttttgatagtcaaagactactgagt	CRISPR spacer
gcttcatttttgatagtcatagacaactggaa	Protospacer
 ... ************** **** ****.. 

38. spacer 3.2|2296380|32|CP029712|CRISPRCasFinder matches to NZ_CP035096 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ttccgatttttgatagtcaaagactactgagt	CRISPR spacer
gcttcatttttgatagtcatagacaactggaa	Protospacer
 ... ************** **** ****.. 

39. spacer 3.4|2296532|32|CP029712|CRISPRCasFinder matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
tcgcggcaagaagatttaaccgtcatcgaaat	Protospacer
  .  .* ************ *****.**** 

40. spacer 3.4|2296532|32|CP029712|CRISPRCasFinder matches to GU943040 (Uncultured phage MedDCM-OCT-S09-C28 genomic sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
gaaacactagaacttttaacggttcaggcggt	Protospacer
************  *********.   * .. 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1092245 : 1101603	9	Sinorhizobium_phage(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP029712|1092245:1101603|DBSCAN-SWA
GATGAACAACAAGATAAAAATCTATTTAGTTGGAGGTGCTGTGCGAGATCAGCTCCTCAATCTTGTTGTGAAAGATCGTGATTGGGTCGTAGTTGGTGCAACGCCAGATGATTTACTATCACAAGGCTATCAACAAGTCGGCAAAGACTTTCCTGTTTTTCTGCATCCCCAAACAAAAGAAGAATATGCTCTCGCTAGAACAGAACGTAAAGCGGGTAGCGGCTATACTGGCTTCATTTGTGATTTTTCACCTACAATTTCTTTGGAACAAGATTTAAGTCGACGTGATTTAACTATCAATGCGCTCGCTCAAGATCTTGACGGAAAAATCTATGATTTTTATGGTGGTCTTACGGATTTAAAACAACGTCTTTTACGCCACGTTTCCCCCGCCTTTGCAGAAGATCCGCTACGCGTATTACGTGTGGCACGTTTTGCTGCTCGCTACCATACTCTTGGCTTCACTATTGCATCTGAAACCTGCGAATTGATGCAACAGTTATCACAAAGTGGTGAGCTGTCAAACCTAACCGCAGAACGTGTCTGGTTAGAAACAGAAAAAGCCTTATTAGAACCGCATCCTGAAGTGTATTTCCAAACGCTACAAGAGGTGGGCGCATTACAAGTACTGTTTCCTGAATTAGCTGCATTACAGGGCGTCCCCAATCCCGCGAAATACCATCCAGAAATAGATACGTTTGTGCATACTATGCTGGTCCTACAACAAGCAGTCTTGTTGACAGAAAACACGGACAGTGACAAAAGTGCGGTACGTTTTGCTGCAATTTGTCATGATTTAGGAAAAGCCTTAACACCAAAAGAAATATTGCCACATCATTATGGACATGAAAAAGCTGGTGTCATGCCGACAAGACGCTTATGTCAGCGCTTTAAATTACCTCACGCAATTCAAGATTTTGCAGAACTTTGTTGTGAATATCATTCGCACATACACAAAGCCTTTGAATTACGTGCGGAGACAATATTGAAATTATTCAATCGTCTAGATGTCTGGCGTAAGCCGGAACGTTTTAAAGCACTTTTGTTAGTCTGTATTGCAGACACGCGTGGTAGGACCGGATTTGAACAAGTTGACTATCCACAACGTGAATTTCTCTGGCAACTTTATCAAAGTGCTCTGCAGGTCAACGTGCAAGACATCATCCAACAAGGTTTCCAGCAGCAAGCCATTCGTGATGAACTCAATCGCCGTCGTATAATCGCGATTAAACAGACACGCGCGGAAATCCTCCCGCGCTTTACTAATCCGTGTTAAGCTCGTAAAATAATCACAATTTTGAGTACTTTTATTGGTTATGAAAAAACAACATTTTCTTTTGCCTATCATTGCAAGTTTCTTTTTATTTGCTTGTACCCTGGATACAGAACGTCCAACGGATGTGAAATATATCAGTCACACCGATCCCACGTGGCAACAACATTTATCTCAACTTAAGAAGATTCGCGATTACACTAACCAAGGTCAGTTAGGTTATATCAGTCAGAAAGAACGATTTTCTACTCGTTTTGACTGGCAATACCAAAATCCAACCAACTACCGTCTAACCTTGTCTTCCACACTGAGCCCAACAACCCTATCTATTGAAGTACGTCATAATGTTATGCACCTGTCTGATAATAAAGGACCTCTCCGCTCAGCACAGGATGCCAAGCGGTTACTGAAAGAGATTGTTGGGATGGATTTACCGCTTGACCAATTCGCCCTTTGGTTAAAAGGACAGCCTGATGAGAGTCGGGAATATCGAGTCGCTGAAAATCACTTACTCGCCCACTTTAGCTATCCTATCGATAATCAACAATGGACAGCGGATTACTTAAGCTATCATCAACTTCCACTTCCTTTACCGAAGGATATTTTGTTGAAGACAGAAGGGCAAACTTTAAAGATTCGTATCGATAACTGGACTTATTAATGCAACATTATCATTTTTCTCACTCACTTTTAGCACAACAAGAAAAACCATATCGTTTCCCTTGTCCGGCTAAACTTAACTTATTTCTCTACATTAATGGGAAACGTCAAGATGGTTATCACGAACTACAAACCCTTTTTCAATTTGTTGATTTTGGTGATTGGTTAGATATTGAGGTTCGCGAAGATAACGAAATCTGCCTAACGCCAGAACTCCCCTCACTAAAAAATGAAGATAATTTAGTCTATCGCGCAGCAAAATTACTGCAACAAAAAACCAATTGTGCTTTAGGCGCCAATCTGACACTTGATAAGATTCTACCGATGGGAAGTGGGCTCGGGGGAGGCTCGTCTAATGCGGCAACAGCATTAGTCGCATTAAATTACCTGTGGAATACGCAACTCAGCACAAAACAACTTGCTAAACTAGGATTAATGCTCGGTGCAGACGTACCAATTTTTGTCCATGGTCACGCGGCATTTGCTGAAGGAGTAGGTGAAAAAATTACTTATTGTGAGCCAAAAGAGAAATGGTATGTGGTTTTAAAGCCAAATGTGTCTATATCAACCGCGACCGTCTTTTCTGATCCAGATTTAATTCGTAATACCCCTAAGCAATCTCTGGAGCAACTCCTCAATCAAAAATATACAAACGATTGTGAAAAAGTTGTGTTAAATCATTATCCAGAGGTTGAAGAAATACTCCACAGATTGTTACAATATGCGCCATCAAGATTAACAGGCACCGGCGCTTGTGTATTTGCCGAATTTAATGACGAAGAAAGTGCACAACTCGCATTTCAAACAATACCCAAAAACTATTTTGGTTTTGTCGCACAAGGATTAAATAAATCACCTTTACATAATATGCTAGCGAAAATCAGCTAGCTCGATAATAACGAATTTACTCAACCATTTTTATTTCTTTACAATCTAAACCTCGAGGTTCAATTAACAATGCCTGATATAAAACTCTTTACTGGTAATGCAACACCAGAACTAGCAAAACGAATTTCTGAACGTTTATATCTCTCATTAGGTGATGCGACTGTTGGTCGTTTCAGTGATGGAGAAATTCAAGTTCAGATCAACGAAAACGTACGTGGTAGTGATGTGTTCATTATTCAATCTACTTGTGCCCCAACAAACGATAACCTAATGGAGTTGATTGTCATGGTTGATGCGTTACGTCGAGCATCTGCTGGTCGTATTACCGCGGTAATTCCTTATTTTGGTTATGCACGCCAAGATCGTCGTGTCCGCTCTGCTCGTGTACCGATTACAGCAAAAGTCGTGGCAGACTTCCTTTCTAGTGTAGGTGTCGATCGCGTGTTAACTTGTGATTTACACGCGGAACAAATCCAAGGTTTTTTTGATGTGCCTGTTGATAACGTCTTTGGTTCACCTGTATTAGTGCATGATATGTTAAAGAAAATCGACATGCAAAATCCGATTGTCGTTTCACCAGATATTGGAGGCGTCGTACGTGCCCGCGCTATCGCAAAATTACTGAATGATACCGATATGGCAATTATTGATAAACGTCGTCCACGTGCCAATGTAGCACAAGTCATGCATATTATCGGGGATGTTGCAGGTCGTGATTGTATTCTTGTGGATGATATGATTGATACTGGTGGGACATTATGTAAAGCGGCTGAAGCCTTAAAAGAACGCGGGGCTAAACGTGTTTTTGCCTATGCGACTCACGCAGTATTCTCTGGCTCGGCTGCGAAAAATCTTGCCAGTGATGCATTAGATGAGGTGGTAGTAACAGACACGATCCCCCTTTCACCAGAAATTAAAGCATTAAACAAAGTCCGCGTATTAACCCTTTCAGGTATGTTGGCTGAAGCTATTCGTCGTATCAGTAACGAAGAATCAATTTCTGCAATGTTCACCTAGTCAAATGACAAAAAAAGTGCGGTTAAAAATATTGAATTTTTAACCGCACTTTTTTATCTCGATAAGCGTCGTCTTTTATAGTCTGAGCTGCCGCTCAATTTCTTTCGCTTTCACTAAGAATTGTTTACGCTCAGCAGTTCCCATACCACTACTTGTTCCCGGTAATTTCACAGTCAATGGATTAACCGCGCGACCATTAATATGAAATTCATAATGTAAATGCGGTCCTGTCGAACGCCCTGTATTTCCCGAAAGAGCAATACGTTGACCACGTTTAACATTTTGCCCTGCTTTGACTAGAGCACGGCTTAAGTGCATATAAACGGTTTGATATTCACGCCCATGTCGTACCACAATATAACGTCCTGCGCCATTTGCTTGATACGCGACTTTTTCCACAATACCATCCGCCGGTGCAATGACCGGTGTACCAACGGGCATAGCAAAATCCACGCCTTTATGTGGTGCAATACGCCCAGTCACAGGGTGGCGTCGATAGGGATTAAAATGAGAAGAAACGCGAGCCTGACGTTGTAAAGGATAACGAGCAAAACCTTTGCCTAGCGTTTCGCCTTGGCGATTATAATAACGCCCATTACTCGCTTGAATCGCATAATAACTTTTGCCAGCTGAAATAATATGGATTCCATCCACATTACCTTGTCCCGTCAGCTTCCCTTCAATATATTCACGTGTCACTAATACCGCAAATTTATCGCCTTTTTTTAGCCGTTTTAAATTAATTTGCCATTGTAATGCATTCGCAAGTTGATTAATTTGGCGGATATCTAAACCTAATGTTCTTAATGCGGTATTAAAAGAACCGTCAATTCTGCCTTTTAACACCTCTTTTTTCCAAACACTTTGTTTCTTTAAAATTTCACGCTGATATTGACCATCTGCTGTTTTTTCGTAGATTTTTTCTTCTCTCTCTGAAACCAACCAATTAAGGTATTCGAGTTCGCCTTGGTTATCTAAGATCCAATAAAATTGCTGACCCGGCTTTAAGTTTTTAAATTCAGGATAGGCTTTAATTAAGCGCTCGCTTACACTGGCATCTAAGCCAGACAACTCTAAAACATCTTTTAAGGAATCCCCTTTTACCACCGTGTGGCTGAACTGATTTTTAATCCGCATTGCCTGATCCATAACATCAAACAAATCACTCAGCGCATGACGAACAGGTTCAGGAAAGGCTGCCAATTCATCTAGCATATCGGGTTTGATTTCATCAACCTCATCATCTTTTGCTTCTAAATCATCATAAAAAGACGTTGCATCTAGTGTATTTTCTGCGGGTTTTGCTGTCGTTTCTTGTGACGATGCATCTACTTGAGTGTCACTGTTTTTTTCATCCATACTGACAGCGGAAGACTCAGTATGATGTTCTGTTATCGCTTGCTTTTCTACTGATTCCGCGGATGAGGGAGGAGAAAGGGTGCTATCCGCTTGTACCGAAGAAGGCGATTCTACCGTGGCTGTAGATAAGGCAGGTTGCTTTTCAATTTGAGTTTCTGTTTGTGTTTGGCTATCTGCACTTGAATCTTGCCCTTCTTCTTTTTTTCCCAACGATACAACGAGAACGATGAATAAAATAATGCTAAAAAAAATTGCGATCTTAATCTGCAATTTTCTTCTTCGTCTATCTCTTGCTAATTTAACGTGCCGCACGCTTCTATTCCTTTGTTTCTCAATTCGTTTAATTATGACCAAGCAAACAATAAAAAATTCAACGGAATGTTAAAAAAGGCATATGAATGCCCAAATTGTATTCATCGTACTTATTTTCATTGGATAAACTTGTTAAACGAATCAAAATAAGCTATTTTTACTGCAACTTTAAGCCGTCAAGTCTAGCAAATAATGCACATTCATTCTATAAAATTACCCTTAGTTGAATTAAAAAACATCAATGTTGTTTTTGAACAGAAAAAAGCATTACAAAATATCAATTTAACCCTTTATCCCAATTCGATCATTACGATTGTCGGTCCTAATGGTGGCGGAAAATCAACCTTATTAAAGGTATTACTCAAATTGCTTCCCCCTACTTCGGGACAAGTTATTTACCATAAAAACTTACGTATTGGTTACGTGCCGCAAAAAATTCACTTAGATCATAGTCTGCCGATTACTGTTGAACGCTTTTTATCACTCAAAAAAGGGATTTCTCGCCAAGCTATCCAAGACGCTTTGTCATTATTGTCAATTAGTCACTTACATAAAAATAGCCTACAAAAATTATCTGGTGGAGAGATGCAACGGGTACTCTTAGCCCGCGCTATCTTGAATAAACCAAATTTATTGGTATTAGATGAACCAACGCAAGGCGTCGATATCAATGGGCAAGCAGAACTTTATCAGTTAATTCAACAAACACAGCAACAATTAAATTGTGCCATTCTCATGGTTTCTCACGATCTCAATATTGTGATGGCAGATACCAATGAAGTGCTCTGTATTAATCAACATATTTGCTGTGCGGGAACACCAGAAACGGTTTCAAATGATCCCACGTTTATTCATTTCTTTGGTGACCAATTTGCCAAAAATGTCGCACTATATACCCATAAACACAACCATAAACATGACATACATGGCGATATTTGCTGTACGTCAGATTTCCAATCTCAACAATGTACTCATAAAGAATAGGATAAATCATGTTTGAAATTCTTTTTCCCGCTTGGCTGACCGGTATGTTGCTTTCCCTGATTACAGCACCACTCGGTGCTTTTGTGGTCTGGCGAAAAATGGCTTACTTTGGTGATACACTTGCTCATTCCGCATTACTTGGAGTGGCATTGGGAATTTTCCTAGATATCAACCCTTACCTTTCGATTGTGCTGCTGACGTTAATCCTCGCCATCCTCATGGTATGGCTAGAAGGGAAAACACAATTTTCGGTGGATACATTACTTGGCATCATTGCGCACAGTTGTTTATCGCTGGGTGTGGTCACCGTTGGCTTATTGCAAAATGTCCGCGTGGATTTAATGGCTTATCTTTTTGGCGATCTATTAGCCATGAACTATGAGGATTTAGTGGTGATTGGTATAGGTGTTGTATTTGTGCTGGTGACATTATTGTATTTCTGGCATCCGCTCCTTTCGACCACAGTCAGTCCAGAACTTGCACAAGTTGAAGGGGTAAATGTGCAGAAAATGCGTTTTATTTTAATGATCTTAACCGCACTGACGATTGCACTTAGTATGAAATTTGTTGGTGCCTTAATTATCACCTCACTCCTGATTATTCCTTCCGCCACGGCAAGGCGGTTTGCCAAAACCCCAGAGAGTATGGTGTTCATTGCAATTCTTATAAGTATGCTTTCAATTAGTTTGGGCTTATTACTTTCCGCTTACTACGATACCGCAGCAGGTCCTTCTGTGGTCATCTGCGCTAGTTTGTTATTCTTGTTGTCATTAATGAAAAAAGAACATAATTAAACCGCTAAAGAGCGGTCCCATTTACACTTTTTTCACGAACATGAAAAAGCGAACCAAAGTTCGCTTTTTATTTGCATTAATCTAGCATAAAACAGGCAATCTTGCTGCCATCCTCATACTGTTTTAAAGCTGGTTTCTCGAGGGCACATTTTTCCATAGCAAAACGACAACGAGCATGGAAAGCACAGCCTTTAGGTGGACTTAATGGACTCGGCAACTCACCTGTCAGTTTAATTCTTTCGCGACGATGTTCAGCTTCCAAACGCGGTGTAGCTGAAAGTAAGGCTTGCGTGTAAGGATGACGAGGATGGTTAAAAATTGCCTTCGTTTCACCTTGTTCAACACAACGCCCTAAATACATAACCATCACTTCATCGGCAATGTGTTCCACCACCGAAAGATCGTGGGAAATAAACACATAAGATAATCCCATTTCTTCTTGCAGATCCATCATCAAGTTTAATACTTGGGCACGGACAGACACATCAAGCGCAGAAACCGGTTCATCCGCCACCACAATATCAGGACGCAACATTAACCCACGCGCAATCGCGATACGTTGACGTTGTCCCCCTGAGAACATGTGTGGATAGCGATCGTAAAACTCTGGTTTTAAGCCCACTTTTTCCATCATTTCCAACACTTGCTGCTTACGTTCTTTGGCATTCAAATCCGTATTGATCAACAACGGCTCTTCTAAAATCGTGCCAATTTTTTTGCGTGGATTTAAAGAAGCATAAGGATTTTGAAACACAATTTGAATTTTCTTACGACGCAATTTTTGTGTGGCCGTGTCATTTTCCAAAAAGTTTTGTCCTTTATAGAAAAGTTCACCTTCTGTTGGGGCTTCAATCATGGTTAGCATGCGACCAAGTGTAGATTTACCACAACCTGACTCCCCCACGATCGCCAATGTTTTACCGCGCTCTAAGGTAAATGAAACCCCATCTACCGCTTTCACTAACTTCGGCTTACTCAATATCCCTTTTTTAACGGGATAGTATTTTTTCAAATTCACTGCATCCAACAAAGGTGCTTGTCTCTCAAGTTCTTGCATATTGTTCTCTTTCTTATTATGACACTGCAAATTCTGTATAACTTGGCATACCTTGCGCATTCAACGGCGTATGACATTTGACGCGATGTCCATTCACCAAACGGGTTTCTGGTTCTTGCTCACGACAACGATCTGTGGCGTATGGGCAACGTGGATTTAATAAACAGCCTGTTGGGCGATCATATTTCCCCGGCACAACCCCCGGTAAAGATTGTAAACGTGATTTTCCTTCTGCAAATTCTGGTAACGCACGTAATAGCGCTTGAGTATATGGATGGCGTGGACATTTAAAAATTTCCTCCGCTCGTCCTTCTTCAACCACTTGCCCTGCATACATCACAATAATGCGGTGGGCTGCTTCCGCGACTAAGGCAAGATCATGGGTGATCAGGATTAACGCCATATTTTCTTTACGCTGTAATTCCAGCAATAAATCAATAATCTGTGCTTGAATCGTCACGTCTAACGCAGTTGTCGGTTCATCTGCAATTAATAATTTCGGATTACAGGCAATCGCCATCGCAATCATCACACGTTGACTCATACCCCCCGATAATTGATGCGGATACACATCTAAACGCGAACGCGGATCAGGAATGCCCACTAAGGTTAATAATTCGATAGCACGTTCTTTACGCCATGCTTTAGCCCCACCTTGATGAACTTTGAGTGCTTCCATAATTTGATAACCCACCGTATAACTTGGGTTTAAACTGGTCATCGCATCTTGGAAAATCATGGACACATCGGCTCCCACAATTTTCTGCTTTTGTTTTTCAGTCAAGGCAAGTAAATCACTTTGATTAAACAGCAATTGTTCCGCTTGTACACGCCCTGGATAATCAATTAGGCCCATAATCGCGAGTGAGCTCACCGATTTTCCTGAACCTGATTCGCCAACAATACCTAATACTTCACCTTCATTGACCGTGTAACTGAGGCGATCCACCGCTTTAAAAGGGGCATTTTCATCACCAAAATGCACCGAAAGATTTTCTACATTTAATAACGCCAT

Protein sequences of DBSCAN-SWA_1

>CP029712|1092245:1101603|1093560_1094178_+|AWW51803.1|DBSCAN-SWA
MKKQHFLLPIIASFFLFACTLDTERPTDVKYISHTDPTWQQHLSQLKKIRDYTNQGQLGYISQKERFSTRFDWQYQNPTNYRLTLSSTLSPTTLSIEVRHNVMHLSDNKGPLRSAQDAKRLLKEIVGMDLPLDQFALWLKGQPDESREYRVAENHLLAHFSYPIDNQQWTADYLSYHQLPLPLPKDILLKTEGQTLKIRIDNWTY
>CP029712|1092245:1101603|1092245_1093520_+|AWW51802.1|DBSCAN-SWA
MNNKIKIYLVGGAVRDQLLNLVVKDRDWVVVGATPDDLLSQGYQQVGKDFPVFLHPQTKEEYALARTERKAGSGYTGFICDFSPTISLEQDLSRRDLTINALAQDLDGKIYDFYGGLTDLKQRLLRHVSPAFAEDPLRVLRVARFAARYHTLGFTIASETCELMQQLSQSGELSNLTAERVWLETEKALLEPHPEVYFQTLQEVGALQVLFPELAALQGVPNPAKYHPEIDTFVHTMLVLQQAVLLTENTDSDKSAVRFAAICHDLGKALTPKEILPHHYGHEKAGVMPTRRLCQRFKLPHAIQDFAELCCEYHSHIHKAFELRAETILKLFNRLDVWRKPERFKALLLVCIADTRGRTGFEQVDYPQREFLWQLYQSALQVNVQDIIQQGFQQQAIRDELNRRRIIAIKQTRAEILPRFTNPC
>CP029712|1092245:1101603|1099607_1100588_-|AWW51809.1|DBSCAN-SWA
MQELERQAPLLDAVNLKKYYPVKKGILSKPKLVKAVDGVSFTLERGKTLAIVGESGCGKSTLGRMLTMIEAPTEGELFYKGQNFLENDTATQKLRRKKIQIVFQNPYASLNPRKKIGTILEEPLLINTDLNAKERKQQVLEMMEKVGLKPEFYDRYPHMFSGGQRQRIAIARGLMLRPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISHDLSVVEHIADEVMVMYLGRCVEQGETKAIFNHPRHPYTQALLSATPRLEAEHRRERIKLTGELPSPLSPPKGCAFHARCRFAMEKCALEKPALKQYEDGSKIACFMLD
>CP029712|1092245:1101603|1095134_1096082_+|AWW51805.1|DBSCAN-SWA
MPDIKLFTGNATPELAKRISERLYLSLGDATVGRFSDGEIQVQINENVRGSDVFIIQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLVHDMLKKIDMQNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVAQVMHIIGDVAGRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVFSGSAAKNLASDALDEVVVTDTIPLSPEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFT
>CP029712|1092245:1101603|1097945_1098737_+|AWW51807.1|DBSCAN-SWA
MHIHSIKLPLVELKNINVVFEQKKALQNINLTLYPNSIITIVGPNGGGKSTLLKVLLKLLPPTSGQVIYHKNLRIGYVPQKIHLDHSLPITVERFLSLKKGISRQAIQDALSLLSISHLHKNSLQKLSGGEMQRVLLARAILNKPNLLVLDEPTQGVDINGQAELYQLIQQTQQQLNCAILMVSHDLNIVMADTNEVLCINQHICCAGTPETVSNDPTFIHFFGDQFAKNVALYTHKHNHKHDIHGDICCTSDFQSQQCTHKE
>CP029712|1092245:1101603|1098745_1099531_+|AWW51808.1|DBSCAN-SWA
MFEILFPAWLTGMLLSLITAPLGAFVVWRKMAYFGDTLAHSALLGVALGIFLDINPYLSIVLLTLILAILMVWLEGKTQFSVDTLLGIIAHSCLSLGVVTVGLLQNVRVDLMAYLFGDLLAMNYEDLVVIGIGVVFVLVTLLYFWHPLLSTTVSPELAQVEGVNVQKMRFILMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPESMVFIAILISMLSISLGLLLSAYYDTAAGPSVVICASLLFLLSLMKKEHN
>CP029712|1092245:1101603|1094177_1095065_+|AWW51804.1|DBSCAN-SWA
MQHYHFSHSLLAQQEKPYRFPCPAKLNLFLYINGKRQDGYHELQTLFQFVDFGDWLDIEVREDNEICLTPELPSLKNEDNLVYRAAKLLQQKTNCALGANLTLDKILPMGSGLGGGSSNAATALVALNYLWNTQLSTKQLAKLGLMLGADVPIFVHGHAAFAEGVGEKITYCEPKEKWYVVLKPNVSISTATVFSDPDLIRNTPKQSLEQLLNQKYTNDCEKVVLNHYPEVEEILHRLLQYAPSRLTGTGACVFAEFNDEESAQLAFQTIPKNYFGFVAQGLNKSPLHNMLAKIS
>CP029712|1092245:1101603|1096157_1097711_-|AWW51806.1|DBSCAN-SWA
MQIKIAIFFSIILFIVLVVSLGKKEEGQDSSADSQTQTETQIEKQPALSTATVESPSSVQADSTLSPPSSAESVEKQAITEHHTESSAVSMDEKNSDTQVDASSQETTAKPAENTLDATSFYDDLEAKDDEVDEIKPDMLDELAAFPEPVRHALSDLFDVMDQAMRIKNQFSHTVVKGDSLKDVLELSGLDASVSERLIKAYPEFKNLKPGQQFYWILDNQGELEYLNWLVSEREEKIYEKTADGQYQREILKKQSVWKKEVLKGRIDGSFNTALRTLGLDIRQINQLANALQWQINLKRLKKGDKFAVLVTREYIEGKLTGQGNVDGIHIISAGKSYYAIQASNGRYYNRQGETLGKGFARYPLQRQARVSSHFNPYRRHPVTGRIAPHKGVDFAMPVGTPVIAPADGIVEKVAYQANGAGRYIVVRHGREYQTVYMHLSRALVKAGQNVKRGQRIALSGNTGRSTGPHLHYEFHINGRAVNPLTVKLPGTSSGMGTAERKQFLVKAKEIERQLRL
>CP029712|1092245:1101603|1100604_1101603_-|AWW51810.1|DBSCAN-SWA
MALLNVENLSVHFGDENAPFKAVDRLSYTVNEGEVLGIVGESGSGKSVSSLAIMGLIDYPGRVQAEQLLFNQSDLLALTEKQKQKIVGADVSMIFQDAMTSLNPSYTVGYQIMEALKVHQGGAKAWRKERAIELLTLVGIPDPRSRLDVYPHQLSGGMSQRVMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAEAAHRIIVMYAGQVVEEGRAEEIFKCPRHPYTQALLRALPEFAEGKSRLQSLPGVVPGKYDRPTGCLLNPRCPYATDRCREQEPETRLVNGHRVKCHTPLNAQGMPSYTEFAVS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW51802.1|1092245_1093520_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	1.8e-92	49.5
AWW51803.1|1093560_1094178_+	lipoprotein localization protein LolB	NA	NA	NA	NA
AWW51804.1|1094177_1095065_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA
AWW51805.1|1095134_1096082_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.9e-43	38.7
AWW51806.1|1096157_1097711_-	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	49.6
AWW51807.1|1097945_1098737_+	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-17	29.7
AWW51808.1|1098745_1099531_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AWW51809.1|1099607_1100588_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-15	26.4
AWW51810.1|1100604_1101603_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4