CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027431	Oenococcus oeni strain 19 chromosome, complete genome	0 crisprs	cas3,DEDDh	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

71 : 23242

Oenococcus_phage(34.78%)

portal,capsid,tail,integrase,head,terminase

attL 4878:4892|attR 27909:27923

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW98022.1\|71_275_-	hypothetical protein	Q38221	Leuconostoc_phage	8.3e-21	88.1
AWW98023.1\|324_462_-	hypothetical protein	Q38221	Leuconostoc_phage	1.6e-07	90.6
AWW98024.1\|1247_1607_-\|head,tail	head-tail adaptor protein	A0A286QS10	Streptococcus_phage	2.0e-09	36.5
AWW98025.1\|2010_3267_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	4.0e-137	62.4
AWW98026.1\|4024_5179_-\|portal	phage portal protein	Q5K5J5	Oenococcus_phage	2.2e-150	72.0
4878:4892	attL	NA	NA	NA	NA
AWW98027.1\|5178_5376_-	DUF1056 domain-containing protein	Q5K5J6	Oenococcus_phage	1.7e-15	69.8
AWW98028.1\|7271_7736_-\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	5.0e-29	46.3
AWW98029.1\|8574_8823_-	hypothetical protein	Q5K5K0	Oenococcus_phage	1.7e-36	91.2
AWW98030.1\|8819_9068_-	hypothetical protein	Q5K5K1	Oenococcus_phage	1.6e-42	97.6
AWW98031.1\|10365_10578_-	hypothetical protein	Q5K5K3	Oenococcus_phage	1.6e-27	97.1
AWW98032.1\|10605_10827_-	NrdH-redoxin	Q5K5J3	Oenococcus_phage	2.7e-33	97.1
AWW98033.1\|10958_11453_-	hypothetical protein	V5USI2	Oenococcus_phage	2.2e-19	41.0
AWW98034.1\|11564_11921_-	VRR-NUC domain-containing protein	L0P7E5	Lactobacillus_phage	4.5e-30	53.6
AWW98035.1\|13357_14161_-	DNA primase	A0A2P0ZLB0	Lactobacillus_phage	2.2e-64	51.5
AWW98036.1\|14141_14714_-	hypothetical protein	A0A0A1ELK1	Lactobacillus_phage	2.9e-26	44.0
AWW98037.1\|14716_15418_-	NTP-binding protein	A0A0A1ENB5	Lactobacillus_phage	6.6e-57	51.2
AWW98038.1\|15414_16674_-	ATP-dependent helicase	A0A0A1ENT0	Lactobacillus_phage	1.6e-114	49.9
AWW98039.1\|16793_17333_-	HNH endonuclease	A0A249XVQ5	Enterococcus_phage	6.4e-20	40.6
AWW98040.1\|17325_17727_-	hypothetical protein	Q0GXW8	Lactococcus_phage	1.6e-07	31.7
AWW98041.1\|17989_18277_-	hypothetical protein	NA	NA	NA	NA
AWW98042.1\|18609_18792_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AWW98043.1\|18801_19041_-	XRE family transcriptional regulator	NA	NA	NA	NA
AWW98044.1\|19193_19841_+	helix-turn-helix domain-containing protein	A0A2I7SCV6	Paenibacillus_phage	1.8e-21	34.5
AWW98045.1\|19883_20147_+	hypothetical protein	NA	NA	NA	NA
AWW98046.1\|20175_20421_+	SHOCT domain-containing protein	NA	NA	NA	NA
AWW98047.1\|20424_20604_+	hypothetical protein	Q6A1Z5	Oenococcus_phage	2.2e-17	88.1
AWW98048.1\|20642_21689_+\|integrase	site-specific integrase	Q9ZXG6	Leuconostoc_phage	4.2e-193	100.0
AWW98049.1\|22038_22428_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
AWW98050.1\|22582_23242_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	1.8e-48	46.4
27909:27923	attR	NA	NA	NA	NA

DBSCAN-SWA_2

301889 : 309356

Streptococcus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW98319.1\|301889_304052_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.6e-117	36.9
AWW98320.1\|304067_304292_-	transcriptional regulator	NA	NA	NA	NA
AWW98321.1\|304408_305005_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.1e-48	53.0
AWW98322.1\|305058_306006_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.2e-30	32.7
AWW98323.1\|306002_306986_-	hypothetical protein	A1IMD5	Streptococcus_phage	5.4e-73	44.3
AWW98324.1\|306982_307414_-	hypothetical protein	NA	NA	NA	NA
AWW98325.1\|307430_308372_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.5e-80	48.2
AWW98326.1\|308480_309356_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	2.6e-71	48.6

DBSCAN-SWA_3

1245357 : 1253100

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW99150.1\|1245357_1245825_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.0e-34	49.3
AWW99151.1\|1245818_1246343_-	hypothetical protein	NA	NA	NA	NA
AWW99152.1\|1246376_1247057_+	uracil-DNA glycosylase	Q53CZ3	Macaca_fuscata_rhadinovirus	1.6e-36	41.9
AWW99153.1\|1247102_1248092_+	phosphate acetyltransferase	NA	NA	NA	NA
AWW99712.1\|1248088_1248409_-	lactoylglutathione lyase	NA	NA	NA	NA
AWW99154.1\|1248459_1250031_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	2.7e-50	28.0
AWW99155.1\|1250104_1250689_+	guanylate kinase	A0A218KC48	Bacillus_phage	3.0e-07	28.7
AWW99156.1\|1250777_1251683_+	trypsin	A0A1B1IRH0	uncultured_Mediterranean_phage	4.6e-10	28.3
AWW99157.1\|1251987_1253100_+	LysM peptidoglycan-binding domain-containing protein	K4ID66	Lactobacillus_phage	4.9e-06	48.5

DBSCAN-SWA_4

1288270 : 1296848

uncultured_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW99191.1\|1288270_1289134_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	4.3e-74	53.2
AWW99192.1\|1289126_1289876_+	acyl-ACP thioesterase	NA	NA	NA	NA
AWW99193.1\|1289910_1290909_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.7e-53	40.0
AWW99194.1\|1290905_1291631_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AWW99195.1\|1291614_1292130_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA
AWW99196.1\|1292126_1293152_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.3e-47	35.8
AWW99197.1\|1293235_1293901_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
AWW99198.1\|1294013_1294289_+	co-chaperone GroES	A0A221S452	uncultured_virus	2.6e-09	35.5
AWW99199.1\|1294292_1295927_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.5e-157	54.8
AWW99200.1\|1296077_1296848_+	nicotinamide mononucleotide transporter	A0A1B1SDZ0	Weissella_phage	5.0e-82	63.9

DBSCAN-SWA_5

1533054 : 1550692

Prochlorococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW99396.1\|1533054_1533549_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	9.1e-21	41.4
AWW99397.1\|1533541_1534660_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AWW99398.1\|1534656_1535382_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	5.1e-36	38.2
AWW99399.1\|1535383_1535647_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AWW99400.1\|1535649_1536315_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AWW99401.1\|1536314_1538540_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.4e-137	38.0
AWW99402.1\|1538550_1540062_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.3e-49	32.1
AWW99403.1\|1540063_1541113_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-69	45.1
AWW99404.1\|1541109_1541697_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-29	40.3
AWW99405.1\|1541693_1543223_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.5e-69	46.9
AWW99406.1\|1543235_1544507_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AWW99407.1\|1544732_1545881_+	guanosine monophosphate reductase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	3.7e-41	35.9
AWW99408.1\|1545968_1547279_+	adenylosuccinate synthase	G5CQQ4	Megavirus	7.4e-70	38.1
AWW99409.1\|1547275_1548577_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	9.1e-20	31.1
AWW99410.1\|1548573_1549137_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	3.3e-11	28.3
AWW99411.1\|1549138_1550692_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.7e-17	31.1

DBSCAN-SWA_6

1762437 : 1825499

Lactobacillus_phage(24.14%)

capsid,holin,tail,head,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWW99602.1\|1762437_1764138_-\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	4.3e-78	32.1
AWW99603.1\|1764213_1764495_-	hypothetical protein	NA	NA	NA	NA
AWW99604.1\|1764521_1766021_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
AWW99605.1\|1766112_1767306_-	adenylyltransferase	A0A2K9VDE3	Lactobacillus_phage	1.7e-97	48.2
AWW99606.1\|1767304_1768486_+	aspartate aminotransferase	NA	NA	NA	NA
AWW99607.1\|1768478_1769657_+	aspartate aminotransferase	NA	NA	NA	NA
AWW99608.1\|1769692_1770265_+	LemA family protein	NA	NA	NA	NA
AWW99609.1\|1770522_1771956_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	1.2e-36	27.2
AWW99610.1\|1772098_1772563_+	nucleoside 2-deoxyribosyltransferase	A0A2K9VD79	Lactobacillus_phage	1.0e-34	44.2
AWW99611.1\|1772722_1774150_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.1e-106	45.7
AWW99612.1\|1774152_1776435_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.9e-121	31.4
AWW99613.1\|1776728_1777211_+	glutathione peroxidase	NA	NA	NA	NA
AWW99614.1\|1778979_1780365_-	MFS transporter	NA	NA	NA	NA
AWW99615.1\|1780449_1780641_-	hypothetical protein	NA	NA	NA	NA
AWW99616.1\|1780718_1781462_-	DNA-binding response regulator	A0A2R2ZGH8	Clostridioides_phage	2.1e-13	26.4
AWW99617.1\|1781458_1783198_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.9e-53	33.3
AWW99618.1\|1784892_1785501_-	hypothetical protein	NA	NA	NA	NA
AWW99619.1\|1785729_1787265_+	amino acid permease	NA	NA	NA	NA
AWW99620.1\|1787286_1788534_-	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	NA	NA	NA	NA
AWW99621.1\|1788739_1789297_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
AWW99622.1\|1789725_1790580_-	metallophosphoesterase	NA	NA	NA	NA
AWW99623.1\|1790772_1791237_-	MerR family transcriptional regulator	NA	NA	NA	NA
AWW99624.1\|1791408_1792899_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	1.3e-14	24.9
AWW99625.1\|1792898_1793627_+	DUF4811 domain-containing protein	NA	NA	NA	NA
AWW99626.1\|1793742_1794300_-	NADPH-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.2e-10	29.4
AWW99627.1\|1794579_1794726_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
AWW99628.1\|1795107_1795332_+	hypothetical protein	NA	NA	NA	NA
AWW99629.1\|1795498_1795729_+	hypothetical protein	NA	NA	NA	NA
AWW99630.1\|1795782_1797030_-	hypothetical protein	NA	NA	NA	NA
AWW99631.1\|1797831_1799115_+	MFS transporter	NA	NA	NA	NA
AWW99632.1\|1799191_1799716_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWW99633.1\|1799755_1799971_-	hypothetical protein	NA	NA	NA	NA
AWW99634.1\|1801120_1801327_+	hypothetical protein	NA	NA	NA	NA
AWW99741.1\|1801592_1802234_-	acyltransferase	NA	NA	NA	NA
AWW99635.1\|1802309_1802810_-	acyltransferase	NA	NA	NA	NA
AWW99636.1\|1802978_1803818_-	hypothetical protein	NA	NA	NA	NA
AWW99637.1\|1803908_1804187_-	hypothetical protein	V9QIY2	Oenococcus_phage	8.4e-40	94.6
AWW99638.1\|1804413_1804701_+	DUF3892 domain-containing protein	NA	NA	NA	NA
AWW99639.1\|1805374_1805578_+	XRE family transcriptional regulator	A0A059NT51	Lactococcus_phage	4.9e-05	37.5
AWW99640.1\|1805857_1806073_+	CsbD family protein	NA	NA	NA	NA
AWW99641.1\|1806346_1806673_+	DUF3892 domain-containing protein	NA	NA	NA	NA
AWW99642.1\|1806939_1807263_+	hypothetical protein	NA	NA	NA	NA
AWW99643.1\|1807458_1807632_+	hypothetical protein	NA	NA	NA	NA
AWW99644.1\|1808370_1808586_+	XRE family transcriptional regulator	Q6EVM2	Oenoccocus_phage	1.1e-10	46.4
AWW99645.1\|1808640_1808925_+	hypothetical protein	A0A2K9VCM1	Lactobacillus_phage	1.5e-07	30.4
AWW99646.1\|1809636_1810128_-\|holin	holin	Q6A203	Oenococcus_phage	8.4e-51	99.1
AWW99742.1\|1810207_1811512_-	1,4-beta-N-acetylmuramidase	Q9ZXB4	Leuconostoc_phage	1.4e-209	87.8
AWW99647.1\|1811595_1812015_-	hypothetical protein	NA	NA	NA	NA
AWW99648.1\|1812024_1812531_-	hypothetical protein	Q6A205	Oenococcus_phage	1.2e-68	78.0
AWW99649.1\|1812530_1812788_-	hypothetical protein	Q5K5I2	Oenococcus_phage	8.6e-31	79.8
AWW99650.1\|1813630_1814722_-	hypothetical protein	Q5K5I4	Oenococcus_phage	5.0e-197	96.4
AWW99651.1\|1814718_1815636_-	hypothetical protein	Q5K5I5	Oenococcus_phage	9.1e-75	78.0
AWW99652.1\|1815635_1820489_-\|tail	phage tail protein	E9LUR1	Lactobacillus_phage	8.2e-199	43.9
AWW99653.1\|1820504_1820741_-	hypothetical protein	NA	NA	NA	NA
AWW99654.1\|1820704_1821142_-	hypothetical protein	Q38222	Leuconostoc_phage	1.2e-72	100.0
AWW99655.1\|1821250_1821871_-\|tail	phage tail protein	Q38221	Leuconostoc_phage	1.1e-111	100.0
AWW99656.1\|1821870_1822254_-	DUF806 domain-containing protein	Q38220	Leuconostoc_phage	1.7e-67	100.0
AWW99657.1\|1822250_1822667_-\|head,tail	phage head-tail adapter protein	Q38219	Leuconostoc_phage	8.4e-68	80.5
AWW99658.1\|1822659_1823019_-\|head,tail	head-tail adaptor protein	A0A286QS10	Streptococcus_phage	2.0e-09	36.5
AWW99659.1\|1823008_1823356_-\|head,tail	phage gp6-like head-tail connector protein	Q38218	Leuconostoc_phage	1.0e-47	89.2
AWW99660.1\|1823424_1824681_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	4.0e-137	62.4
AWW99661.1\|1824677_1825499_-\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	5.7e-44	43.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage