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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029052 Bacillus subtilis subsp. subtilis strain BS155 chromosome, complete genome 1 crisprs csa3,cas3,WYL,DinG,DEDDh 0 1 13 0

Results visualization

1. CP029052
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029052_2 3273757-3273864 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP029052_2 2.1|3273781|60|CP029052|CRISPRCasFinder 3273781-3273840 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|3273781|60|CP029052|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 152265 : 198245 43 Bacillus_phage(52.38%) capsid,tRNA,terminase,portal NA
DBSCAN-SWA_2 677473 : 721752 51 uncultured_Caudovirales_phage(34.62%) head,terminase,protease,portal,tRNA,tail NA
DBSCAN-SWA_3 1321260 : 1363632 37 Pandoravirus(50.0%) tRNA,coat NA
DBSCAN-SWA_4 1400263 : 1430036 25 uncultured_Caudovirales_phage(38.1%) portal,holin NA
DBSCAN-SWA_5 1964604 : 1971121 8 Bacillus_phage(100.0%) holin NA
DBSCAN-SWA_6 1981542 : 1991526 15 Bacillus_phage(92.31%) NA NA
DBSCAN-SWA_7 2006793 : 2015105 16 Bacillus_phage(91.67%) NA NA
DBSCAN-SWA_8 2018111 : 2034374 25 Bacillus_phage(100.0%) integrase attL 2017510:2017530|attR 2038559:2038579
DBSCAN-SWA_9 2050658 : 2058347 19 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_10 2062906 : 2073343 21 Bacillus_phage(87.5%) NA NA
DBSCAN-SWA_11 2278653 : 2288832 15 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_12 2710734 : 2856868 115 uncultured_Caudovirales_phage(26.47%) capsid,terminase,portal,coat,tRNA,holin NA
DBSCAN-SWA_13 3938978 : 3993609 35 Staphylococcus_phage(16.67%) coat,tRNA,protease,bacteriocin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage