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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029642 Arthrobacter sp. DCT-5 chromosome, complete genome 9 crisprs NA 2 3 0 0
CP029643 Arthrobacter sp. DCT-5 plasmid pDCT5, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP029642
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_1 60284-60357 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_2 152537-152631 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_3 781628-781716 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_4 1006202-1006264 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_5 2434977-2435067 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_6 2560264-2560342 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_7 3429047-3429127 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_8 3612034-3612143 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029642_9 3622115-3622223 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029642_1 1.1|60307|28|CP029642|CRISPRCasFinder 60307-60334 28 CP029642.1 466862-466889 0 1.0
CP029642_4 4.1|1006226|15|CP029642|CRISPRCasFinder 1006226-1006240 15 CP029643.1 16490-16504 1 0.933

1. spacer 1.1|60307|28|CP029642|CRISPRCasFinder matches to position: 466862-466889, mismatch: 0, identity: 1.0

ggcgggctcagcgacagcgacagtaacg	CRISPR spacer
ggcgggctcagcgacagcgacagtaacg	Protospacer
****************************

2. spacer 4.1|1006226|15|CP029642|CRISPRCasFinder matches to position: 16490-16504, mismatch: 1, identity: 0.933

gggcgccgggttccg	CRISPR spacer
gggcgccgggtttcg	Protospacer
************.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NZ_CP044987 Deinococcus sp. AJ005 plasmid p96k, complete sequence 72187-72211 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 MH015258 Ruegeria phage vB_RpoS-V16, complete genome 49749-49773 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 MH015249 Ruegeria phage vB_RpoS-V7, complete genome 47053-47077 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 KM581061 Ruegeria phage DSS3-P1, complete genome 47076-47100 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 HQ632855 Silicibacter phage DSS3-P1, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces 13368-13392 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 MH015254 Ruegeria phage vB_RpoS-V11, complete genome 46613-46637 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 MH015252 Ruegeria phage vB_RpoS-V18, complete genome 46737-46761 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NC_023555 Edwardsiella phage eiAU-183, complete genome 18303-18327 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NC_042029 Edwardsiella phage eiAU, complete genome 18302-18326 3 0.88
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NZ_CP054606 Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed7, complete sequence 136110-136134 4 0.84
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 AP021850 Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome 167184-167208 4 0.84
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NC_005241 Cupriavidus necator H16 megaplasmid pHG1, complete sequence 243766-243790 4 0.84
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NZ_CP039289 Cupriavidus necator H16 plasmid pHG1, complete sequence 243765-243789 4 0.84
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NZ_CP016463 Bosea sp. RAC05 plasmid pBSY19_1, complete sequence 117067-117091 4 0.84
CP029642_2 2.1|152572|25|CP029642|CRISPRCasFinder 152572-152596 25 NZ_CP015738 Shinella sp. HZN7 plasmid pShin-02, complete sequence 411998-412022 5 0.8
CP029642_3 3.1|781656|33|CP029642|CRISPRCasFinder 781656-781688 33 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 388729-388761 7 0.788
CP029642_3 3.1|781656|33|CP029642|CRISPRCasFinder 781656-781688 33 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 176015-176047 8 0.758
CP029642_3 3.1|781656|33|CP029642|CRISPRCasFinder 781656-781688 33 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 592132-592164 8 0.758
CP029642_3 3.1|781656|33|CP029642|CRISPRCasFinder 781656-781688 33 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 506354-506386 9 0.727
CP029642_6 6.1|2560288|31|CP029642|CRISPRCasFinder 2560288-2560318 31 NZ_MH220287 Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence 193415-193445 9 0.71
CP029642_6 6.1|2560288|31|CP029642|CRISPRCasFinder 2560288-2560318 31 NZ_MH220286 Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence 159270-159300 9 0.71
CP029642_6 6.1|2560288|31|CP029642|CRISPRCasFinder 2560288-2560318 31 NZ_MH220285 Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence 155311-155341 9 0.71

1. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NZ_CP044987 (Deinococcus sp. AJ005 plasmid p96k, complete sequence) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
tcgtcgcggctgccctggccggtgc	Protospacer
 ****************.******.

2. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to MH015258 (Ruegeria phage vB_RpoS-V16, complete genome) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgaccgctgg	Protospacer
*** ***************** ** 

3. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to MH015249 (Ruegeria phage vB_RpoS-V7, complete genome) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgaccgctgg	Protospacer
*** ***************** ** 

4. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to KM581061 (Ruegeria phage DSS3-P1, complete genome) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgaccgctgg	Protospacer
*** ***************** ** 

5. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to HQ632855 (Silicibacter phage DSS3-P1, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgaccgctgg	Protospacer
*** ***************** ** 

6. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to MH015254 (Ruegeria phage vB_RpoS-V11, complete genome) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgaccgctgg	Protospacer
*** ***************** ** 

7. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to MH015252 (Ruegeria phage vB_RpoS-V18, complete genome) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgaccgctgg	Protospacer
*** ***************** ** 

8. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NC_023555 (Edwardsiella phage eiAU-183, complete genome) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgacctgttt	Protospacer
*** **************** ** *

9. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NC_042029 (Edwardsiella phage eiAU, complete genome) position: , mismatch: 3, identity: 0.88

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcggcgcggctgccctgacctgttt	Protospacer
*** **************** ** *

10. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NZ_CP054606 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed7, complete sequence) position: , mismatch: 4, identity: 0.84

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
acgtcgcggctgagctgaccggtga	Protospacer
.***********  ********** 

11. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 4, identity: 0.84

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
ccgtcgcggcggccctgaccggcct	Protospacer
 ********* ***********. *

12. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NC_005241 (Cupriavidus necator H16 megaplasmid pHG1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
tcgtcgcggctgccctgacgggcgg	Protospacer
 ****************** **.* 

13. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NZ_CP039289 (Cupriavidus necator H16 plasmid pHG1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
tcgtcgcggctgccctgacgggcgg	Protospacer
 ****************** **.* 

14. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcgtcgaggcggccctgaccggtca	Protospacer
****** *** ************  

15. spacer 2.1|152572|25|CP029642|CRISPRCasFinder matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 5, identity: 0.8

gcgtcgcggctgccctgaccggtgt	CRISPR spacer
gcgtcgcggctgccttgaccgtatc	Protospacer
**************.******   .

16. spacer 3.1|781656|33|CP029642|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

gattttcc---ggggccctcgggcgcgtgggcccat	CRISPR spacer
---ttcgcgtggggcccctcgggcgcgtgggcccaa	Protospacer
   **. *   *** ******************** 

17. spacer 3.1|781656|33|CP029642|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

gattttccggggccctcgggcgcgtgggcccat	CRISPR spacer
ctcgtgtcgggtccctcgggcgcgtgggcccaa	Protospacer
  . * .**** ******************** 

18. spacer 3.1|781656|33|CP029642|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

-----gattttccggggccctcgggcgcgtgggcccat	CRISPR spacer
ataaaga-----cggggccctcgcgcgcgggggcccaa	Protospacer
     **     *********** ***** ******* 

19. spacer 3.1|781656|33|CP029642|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

gattttccggggccctcgggcgcgtgggcccat	CRISPR spacer
ttcggttggggcccctcgggcgcgtgggcccaa	Protospacer
  .  *. *** ******************** 

20. spacer 6.1|2560288|31|CP029642|CRISPRCasFinder matches to NZ_MH220287 (Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence) position: , mismatch: 9, identity: 0.71

ctcgggcgcgtgggcccaccacgccctccca	CRISPR spacer
tataggcgcgtgtgcccaccacgcccttgat	Protospacer
. ..******** **************.   

21. spacer 6.1|2560288|31|CP029642|CRISPRCasFinder matches to NZ_MH220286 (Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence) position: , mismatch: 9, identity: 0.71

ctcgggcgcgtgggcccaccacgccctccca	CRISPR spacer
tataggcgcgtgtgcccaccacgcccttgat	Protospacer
. ..******** **************.   

22. spacer 6.1|2560288|31|CP029642|CRISPRCasFinder matches to NZ_MH220285 (Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence) position: , mismatch: 9, identity: 0.71

ctcgggcgcgtgggcccaccacgccctccca	CRISPR spacer
tataggcgcgtgtgcccaccacgcccttgat	Protospacer
. ..******** **************.   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP029643
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage