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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP021644 Glaesserella parasuis 29755 chromosome, complete genome 2 crisprs PD-DExK,DEDDh,WYL,cas3,cas2 7 3 11 0

Results visualization

1. CP021644
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021644_4 1287627-1287729 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021644_5 1657422-1657591 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 CP021644.1 1657674-1657709 0 1.0
CP021644_2 2.3|1056523|38|CP021644|CRT 1056523-1056560 38 CP021644.1 1056289-1056326 0 1.0
CP021644_2 2.3|1056523|38|CP021644|CRT 1056523-1056560 38 CP021644.1 1084675-1084712 0 1.0
CP021644_2 2.3|1056523|38|CP021644|CRT 1056523-1056560 38 CP021644.1 1657377-1657414 0 1.0
CP021644_2 2.3|1056523|38|CP021644|CRT 1056523-1056560 38 CP021644.1 1657611-1657648 0 1.0
CP021644_2 2.4|1056586|38|CP021644|CRT 1056586-1056623 38 CP021644.1 1657674-1657711 0 1.0
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 CP021644.1 1657674-1657709 0 1.0
CP021644_2 2.2|1056440|46|CP021644|PILER-CR 1056440-1056485 46 CP021644.1 1084575-1084620 1 0.978
CP021644_2 2.5|1056649|38|CP021644|CRT 1056649-1056686 38 CP021644.1 1433082-1433119 1 0.974
CP021644_2 2.5|1056649|38|CP021644|CRT 1056649-1056686 38 CP021644.1 1657737-1657774 1 0.974
CP021644_5 5.2|1657528|46|CP021644|PILER-CR 1657528-1657573 46 CP021644.1 1084575-1084620 1 0.978
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 CP021644.1 14630-14665 2 0.944
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 CP021644.1 194028-194063 2 0.944
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 CP021644.1 1215291-1215326 2 0.944
CP021644_2 2.3|1056523|38|CP021644|CRT 1056523-1056560 38 CP021644.1 669943-669980 2 0.947
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 CP021644.1 14630-14665 2 0.944
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 CP021644.1 194028-194063 2 0.944
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 CP021644.1 1215291-1215326 2 0.944

1. spacer 2.1|1056369|36|CP021644|PILER-CR matches to position: 1657674-1657709, mismatch: 0, identity: 1.0

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtatt	Protospacer
************************************

2. spacer 2.3|1056523|38|CP021644|CRT matches to position: 1056289-1056326, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

3. spacer 2.3|1056523|38|CP021644|CRT matches to position: 1084675-1084712, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

4. spacer 2.3|1056523|38|CP021644|CRT matches to position: 1657377-1657414, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

5. spacer 2.3|1056523|38|CP021644|CRT matches to position: 1657611-1657648, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

6. spacer 2.4|1056586|38|CP021644|CRT matches to position: 1657674-1657711, mismatch: 0, identity: 1.0

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtattcc	Protospacer
**************************************

7. spacer 5.1|1657457|36|CP021644|PILER-CR matches to position: 1657674-1657709, mismatch: 0, identity: 1.0

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtatt	Protospacer
************************************

8. spacer 2.2|1056440|46|CP021644|PILER-CR matches to position: 1084575-1084620, mismatch: 1, identity: 0.978

gcagggaacagcgggtgctcagggacctaagggggataaaggcgaa	CRISPR spacer
gcagggaacaacgggtgctcagggacctaagggggataaaggcgaa	Protospacer
**********.***********************************

9. spacer 2.5|1056649|38|CP021644|CRT matches to position: 1433082-1433119, mismatch: 1, identity: 0.974

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccagtgggaccaca	Protospacer
****************************.*********

10. spacer 2.5|1056649|38|CP021644|CRT matches to position: 1657737-1657774, mismatch: 1, identity: 0.974

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccaacgggaccaca	Protospacer
***************************.**********

11. spacer 5.2|1657528|46|CP021644|PILER-CR matches to position: 1084575-1084620, mismatch: 1, identity: 0.978

gcagggaacagcgggtgctcagggacctaagggggataaaggcgaa	CRISPR spacer
gcagggaacaacgggtgctcagggacctaagggggataaaggcgaa	Protospacer
**********.***********************************

12. spacer 2.1|1056369|36|CP021644|PILER-CR matches to position: 14630-14665, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

13. spacer 2.1|1056369|36|CP021644|PILER-CR matches to position: 194028-194063, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

14. spacer 2.1|1056369|36|CP021644|PILER-CR matches to position: 1215291-1215326, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccaggtcctagaggtgaacaaggtatt	Protospacer
***********.*******.****************

15. spacer 2.3|1056523|38|CP021644|CRT matches to position: 669943-669980, mismatch: 2, identity: 0.947

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcgggtccaaaaggtgatacaggtcagaaaggtgaaac	Protospacer
**.*************************.*********

16. spacer 5.1|1657457|36|CP021644|PILER-CR matches to position: 14630-14665, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

17. spacer 5.1|1657457|36|CP021644|PILER-CR matches to position: 194028-194063, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

18. spacer 5.1|1657457|36|CP021644|PILER-CR matches to position: 1215291-1215326, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccaggtcctagaggtgaacaaggtatt	Protospacer
***********.*******.****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 MT774376 CrAssphage cr55_1, complete genome 95725-95760 7 0.806
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 MT774376 CrAssphage cr55_1, complete genome 95725-95760 7 0.806
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 MT774380 CrAssphage cr1_1, complete genome 22-57 9 0.75
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 MT774380 CrAssphage cr1_1, complete genome 99826-99861 9 0.75
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 GU339467 Mycobacterium phage RedRock, complete genome 4988-5023 9 0.75
CP021644_2 2.4|1056586|38|CP021644|CRT 1056586-1056623 38 MT774376 CrAssphage cr55_1, complete genome 95723-95760 9 0.763
CP021644_2 2.4|1056586|38|CP021644|CRT 1056586-1056623 38 MT774380 CrAssphage cr1_1, complete genome 20-57 9 0.763
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 MT774380 CrAssphage cr1_1, complete genome 22-57 9 0.75
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 MT774380 CrAssphage cr1_1, complete genome 99826-99861 9 0.75
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 GU339467 Mycobacterium phage RedRock, complete genome 4988-5023 9 0.75
CP021644_2 2.1|1056369|36|CP021644|PILER-CR 1056369-1056404 36 MT774380 CrAssphage cr1_1, complete genome 1-30 12 0.667
CP021644_5 5.1|1657457|36|CP021644|PILER-CR 1657457-1657492 36 MT774380 CrAssphage cr1_1, complete genome 1-30 12 0.667

1. spacer 2.1|1056369|36|CP021644|PILER-CR matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 7, identity: 0.806

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggggaacctggtcctaaaggtgaaccgggagct	Protospacer
***** ***** **************** .** ..*

2. spacer 5.1|1657457|36|CP021644|PILER-CR matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 7, identity: 0.806

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggggaacctggtcctaaaggtgaaccgggagct	Protospacer
***** ***** **************** .** ..*

3. spacer 2.1|1056369|36|CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
cagggagaacctggtcctaaaggtgaaccgggagaa	Protospacer
 **** ***** **************** .** .  

4. spacer 2.1|1056369|36|CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccgggagct	Protospacer
  *** ***** **************** .** ..*

5. spacer 2.1|1056369|36|CP021644|PILER-CR matches to GU339467 (Mycobacterium phage RedRock, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgatccgggtccgaaaggtgacaccggcagc	Protospacer
******** ******** ********    **.* .

6. spacer 2.4|1056586|38|CP021644|CRT matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 9, identity: 0.763

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
aagggggaacctggtcctaaaggtgaaccgggagctga	Protospacer
***** ***** **************** .** ..*  

7. spacer 2.4|1056586|38|CP021644|CRT matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.763

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
cagggagaacctggtcctaaaggtgaaccgggagaacc	Protospacer
 **** ***** **************** .** .  **

8. spacer 5.1|1657457|36|CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
cagggagaacctggtcctaaaggtgaaccgggagaa	Protospacer
 **** ***** **************** .** .  

9. spacer 5.1|1657457|36|CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccgggagct	Protospacer
  *** ***** **************** .** ..*

10. spacer 5.1|1657457|36|CP021644|PILER-CR matches to GU339467 (Mycobacterium phage RedRock, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgatccgggtccgaaaggtgacaccggcagc	Protospacer
******** ******** ********    **.* .

11. spacer 2.1|1056369|36|CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 12, identity: 0.667

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccg------	Protospacer
  *** ***** **************** .      

12. spacer 5.1|1657457|36|CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 12, identity: 0.667

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccg------	Protospacer
  *** ***** **************** .      

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 578926 : 587307 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 591740 : 672589 84 Mannheimia_phage(28.95%) terminase,transposase,tail,portal,integrase,tRNA attL 591662:591711|attR 628162:628211
DBSCAN-SWA_3 753171 : 788769 36 Pseudomonas_phage(12.5%) transposase,tRNA,protease NA
DBSCAN-SWA_4 884922 : 895848 10 Mollivirus(11.11%) transposase,tRNA NA
DBSCAN-SWA_5 918676 : 1031764 141 Mannheimia_phage(39.29%) terminase,transposase,tail,tRNA,head,plate,bacteriocin,holin,capsid NA
DBSCAN-SWA_6 1036497 : 1042119 12 Mannheimia_phage(100.0%) tail,capsid NA
DBSCAN-SWA_7 1153769 : 1208105 78 Mannheimia_phage(67.39%) terminase,tail,tRNA,integrase,bacteriocin,holin,capsid attL 1156893:1156914|attR 1212884:1212905
DBSCAN-SWA_8 1239423 : 1254450 11 Bacillus_virus(11.11%) transposase NA
DBSCAN-SWA_9 1813707 : 1883843 55 Bacillus_phage(12.5%) transposase,tail,portal,tRNA,head,protease NA
DBSCAN-SWA_10 2074088 : 2137903 57 Acinetobacter_phage(17.65%) transposase,tRNA,protease NA
DBSCAN-SWA_11 2145256 : 2249058 113 Haemophilus_phage(78.57%) transposase,tail,head,plate,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage