CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	10 crisprs	WYL,csa3,DEDDh,cas3,DinG	5	2	11	1
CP030324	Staphylococcus aureus strain AR_475 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030323_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_1

501411-501496

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_1

>merge|CP030323|1|501411-501496|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>CP030323|1|1|501411-501496|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ62697.1\|496185_497565_+\|tRNA-modification-GTPase-TrmE	unknown	unknown	gnl\|CDD\|235392
CP030323.1\|AWZ63420.1\|505826_506018_-\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ64746.1\|504074_504266_-\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ63808.1\|504302_504644_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|225382
CP030323.1\|AWZ64515.1\|504722_505220_+\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ63207.1\|490192_491305_-\|DNA-replication-and-repair-RecF-family-protein	unknown	unknown	gnl\|CDD\|273173
CP030323.1\|AWZ62673.1\|493338_494700_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
CP030323.1\|AWZ62786.1\|491927_493061_-\|DNA-polymerase-III,-beta-subunit	unknown	unknown	gnl\|CDD\|235541
CP030323.1\|AWZ63443.1\|491301_491538_-\|S4-domain-protein	unknown	unknown	gnl\|CDD\|274378
CP030323.1\|AWZ64783.1\|502786_503356_+\|helix-turn-helix-family-protein	unknown	unknown	gnl\|CDD\|238045
CP030323.1\|AWZ62799.1\|499508_500228_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-GidB	unknown	unknown	gnl\|CDD\|234637
CP030323.1\|AWZ63774.1\|495430_495568_+\|ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
CP030323.1\|AWZ62727.1\|502140_502536_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288237
CP030323.1\|AWZ64155.1\|497631_499509_+\|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA	unknown	unknown	gnl\|CDD\|235362
CP030323.1\|AWZ63343.1\|506110_507991_-\|ftsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|376899
CP030323.1\|AWZ63185.1\|505287_505689_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|225382
CP030323.1\|AWZ62458.1\|501719_502073_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288237
CP030323.1\|AWZ64866.1\|495694_496042_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782
CP030323.1\|AWZ63599.1\|503482_503683_-\|cold-shock-protein-CspC	unknown	unknown	gnl\|CDD\|224197
CP030323.1\|AWZ63922.1\|500270_501110_+\|nucleoid-occlusion-protein	unknown	unknown	gnl\|CDD\|275105

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ62697.1\|496185_497565_+\|tRNA-modification-GTPase-TrmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
CP030323.1\|AWZ63808.1\|504302_504644_-\|integrase-core-domain-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.5864e-28
CP030323.1\|AWZ63207.1\|490192_491305_-\|DNA-replication-and-repair-RecF-family-protein	gnl\|CDD\|273173	TIGR00611, DNA_replication_and_repair_protein_RecF, recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.72951e-173
CP030323.1\|AWZ62673.1\|493338_494700_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
CP030323.1\|AWZ62786.1\|491927_493061_-\|DNA-polymerase-III,-beta-subunit	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	3.87922e-156
CP030323.1\|AWZ63443.1\|491301_491538_-\|S4-domain-protein	gnl\|CDD\|274378	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage. [DNA metabolism, DNA replication, recombination, and repair].	4.30013e-25
CP030323.1\|AWZ64783.1\|502786_503356_+\|helix-turn-helix-family-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.69728e-16
CP030323.1\|AWZ62799.1\|499508_500228_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-GidB	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	3.12556e-96
CP030323.1\|AWZ63774.1\|495430_495568_+\|ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	8.39798e-10
CP030323.1\|AWZ62727.1\|502140_502536_+\|hypothetical-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	6.39285e-39
CP030323.1\|AWZ64155.1\|497631_499509_+\|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
CP030323.1\|AWZ63343.1\|506110_507991_-\|ftsX-like-permease-family-protein	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	3.10596e-06
CP030323.1\|AWZ63185.1\|505287_505689_-\|integrase-core-domain-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.1422e-30
CP030323.1\|AWZ62458.1\|501719_502073_+\|hypothetical-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.88155e-38
CP030323.1\|AWZ64866.1\|495694_496042_+\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	6.56083e-51
CP030323.1\|AWZ63599.1\|503482_503683_-\|cold-shock-protein-CspC	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.4289e-30
CP030323.1\|AWZ63922.1\|500270_501110_+\|nucleoid-occlusion-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.327e-113

>CP030323.1|AWZ63922.1|500270_501110_+|nucleoid-occlusion-protein
MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESIHEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGKITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
>CP030323.1|AWZ62799.1|499508_500228_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-GidB
MTVEWLAEQLKEHNIELTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIAPSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
>CP030323.1|AWZ64155.1|497631_499509_+|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA
MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQRVSD
>CP030323.1|AWZ62697.1|496185_497565_+|tRNA-modification-GTPase-TrmE
MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINHLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
>CP030323.1|AWZ64866.1|495694_496042_+|ribonuclease-P-protein-component
MEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK
>CP030323.1|AWZ63774.1|495430_495568_+|ribosomal-protein-L34
MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA
>CP030323.1|AWZ62673.1|493338_494700_-|chromosomal-replication-initiator-protein-DnaA
MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEIIQAILFDVVGYEVKPHFITTEELANYSNNETATPKETTKPSTETTEDNHVLGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEIRNV
>CP030323.1|AWZ62786.1|491927_493061_-|DNA-polymerase-III,-beta-subunit
MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTY
>CP030323.1|AWZ63443.1|491301_491538_-|S4-domain-protein
MVQEVVVEGDINLGQFLKTEGIIESGGQAKWFLQDVEVLINGVRETRRGKKLEHQDRIDIPELPEDAGSFLIIHQGEQ
>CP030323.1|AWZ63207.1|490192_491305_-|DNA-replication-and-repair-RecF-family-protein
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYTQNEAARLEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK
>CP030323.1|AWZ62458.1|501719_502073_+|hypothetical-protein
MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSLYINHKGYRKGAIFTVVCWFVISLAIFSIRHL
>CP030323.1|AWZ62727.1|502140_502536_+|hypothetical-protein
MKLTLMKFFVGGFAVLLSYIVSVTLPWKEFGGIFATFPAVFLVSMFITGMQYGDKVAVHVSRGAVFGMTGVLVCILVTWMMLHMTHMWLISIIVGLLSWFISAVCIFEAVEFIAQKRLEKHSWKAGKTNSK
>CP030323.1|AWZ64783.1|502786_503356_+|helix-turn-helix-family-protein
MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDLVKGTIPFVPDIKVQRSLNLWAYVMIIFMTLAAILTGPLIVYWNWAWGITVMVIYGIGYYASMKIEDFKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNIKTSVLSFIAFVGAIILVALISMYLANKFL
>CP030323.1|AWZ63599.1|503482_503683_-|cold-shock-protein-CspC
MNNGTVKWFNAEKGFGFIEQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQRGDQAVNVQTV
>CP030323.1|AWZ64746.1|504074_504266_-|hypothetical-protein
MKFRELVKQSYEDLKNLTVTWYNVIALAMIVIVLSVVTTPIIGIPVGLLGGAYYLKRREEKGK
>CP030323.1|AWZ63808.1|504302_504644_-|integrase-core-domain-protein
MHLSILPSHIFKSITFDCGKEFSNWKTICNCHDISIFFADPGTPSQRGLNEHSNGILRRSGLDKELDFNLVTDDHIISVAQKINHRLRKSLGYRTPLEVFMSFIEDDKLSSLI
>CP030323.1|AWZ64515.1|504722_505220_+|hypothetical-protein
MIINLETQQIHFDLEHETPYFQSPEKNRIRLDIDVLNKKQISNIINVIFNNQSKTKCTFLSEYLYPVKFREKTRIGRFFNITNWYEEIHSTDEKYVIATIKNIKNKDLIDYSLYIKKGLVEPFIVFYNQENIFYISNTVIDIISVSKDTLGYIKSEFNDHCASPY
>CP030323.1|AWZ63185.1|505287_505689_-|integrase-core-domain-protein
MIITLRPLGRKATDIENTLHSMFSSLPSHIFKSITFDCGKEFSNWKTICNCHDISIFFADPGTPSQRGLNEHSNGILRRSGLDKELDFNLITDNHIISVVQNINHRPRKSLGYRTPLEVFMSFIEDDKLSSLI
>CP030323.1|AWZ63420.1|505826_506018_-|hypothetical-protein
MKFRELVKQSYEDLKNLTVTWYNVIALAMIVIVLSSVTTPIIGIPAGLLGGAYYLKRREEKGK
>CP030323.1|AWZ63343.1|506110_507991_-|ftsX-like-permease-family-protein
MTFNHIVLKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGVNNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRRTREFALFQLIGLTRQNILKMLALEQMIVFLITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTILMLIIAYILILFQSSLFLKRRSILSMMKDSIKTDVTTAKVTTAEVISGVLGIAMIALGYYMATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVVFTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLISMAPNEFNVVASQDAQQFESKLSQQHITFTKNYYETITVNNVKDQVITLENGSDSGRTNSILSANTKLTGNNAIITNTKSLPNIINIHLNKDLVVKGTKNETFRVTQEDKGKVYPLNLSFNSPVVEVSPEKYQQLKTQNNVHTFYGYDIKQTSQKEKAQAIAKQFGDKVITYDDMKKEVDATNGILIFVTSFLGLAFLVAAGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNFGLPLLIAILHAVFAAIAFMKLMGNISFMPVIIVIIVYTLIYIVFALIAFVHSNKLIKKTI

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Crispr_ID: CP030323_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_4

844474-844566

Orphan

Consensus_repeat	Method
CTTTCTAACAAATAAATTTGAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_4

>merge|CP030323|4|844474-844566|CRISPRCasFinder
CTTTCTAACAAATAAATTTGAAGAAGACAAAGGAACGTAGTAGGACGTAAAACGTCAACTGCATAAGCCTTTCTAACAAATAAATTTGAAGAA

>CP030323|4|2|844474-844566|CRISPRCasFinder
CTTTCTAACAAATAAATTTGAAGAA	GACAAAGGAACGTAGTAGGACGTAAAACGTCAACTGCATAAGC
CTTTCTAACAAATAAATTTGAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ64103.1\|847085_848525_+\|H+-antiporter-2-family-protein	unknown	unknown	gnl\|CDD\|129794
CP030323.1\|AWZ62840.1\|842768_844079_-\|immunoglobulin-binding-protein-sbi	unknown	unknown	gnl\|CDD\|288473
CP030323.1\|AWZ64183.1\|835520_836528_+\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755
CP030323.1\|AWZ64175.1\|841158_841284_-\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ64920.1\|850121_850853_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224051
CP030323.1\|AWZ64995.1\|836508_837621_+\|aminotransferase-class-V-family-protein	unknown	unknown	gnl\|CDD\|223234
CP030323.1\|AWZ64088.1\|838853_839831_-\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|273388
CP030323.1\|AWZ62968.1\|853705_853957_+\|antitoxin-YefM	unknown	unknown	gnl\|CDD\|225072
CP030323.1\|AWZ64502.1\|848645_849425_+\|bacterial-extracellular-solute-binding,-3-family-protein	unknown	unknown	gnl\|CDD\|270429
CP030323.1\|AWZ63495.1\|845967_846654_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184518
CP030323.1\|AWZ63860.1\|852454_852817_+\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|291399
CP030323.1\|AWZ64805.1\|852835_853435_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|224565
CP030323.1\|AWZ62740.1\|850949_852200_-\|femAB-family-protein	unknown	unknown	gnl\|CDD\|367067
CP030323.1\|AWZ64802.1\|837631_838324_+\|6-carboxyhexanoate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|224342
CP030323.1\|AWZ63790.1\|834160_835519_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
CP030323.1\|AWZ64473.1\|844775_845642_+\|cation-diffusion-facilitator-transporter-family-protein	unknown	unknown	gnl\|CDD\|223131
CP030323.1\|AWZ64224.1\|839832_840780_-\|gamma-hemolysin-component-C	unknown	unknown	gnl\|CDD\|369625
CP030323.1\|AWZ62875.1\|838334_838802_+\|queT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
CP030323.1\|AWZ62854.1\|849405_850125_+\|L-cystine-transport-system-permease-protein-TcyB	unknown	unknown	gnl\|CDD\|223836
CP030323.1\|AWZ64694.1\|841347_842277_-\|gamma-hemolysin-component-A	unknown	unknown	gnl\|CDD\|369625

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ64103.1\|847085_848525_+\|H+-antiporter-2-family-protein	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.87495e-92
CP030323.1\|AWZ62840.1\|842768_844079_-\|immunoglobulin-binding-protein-sbi	gnl\|CDD\|288473	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI. This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold.	1.40953e-27
CP030323.1\|AWZ64183.1\|835520_836528_+\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
CP030323.1\|AWZ64920.1\|850121_850853_+\|ABC-transporter-family-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.36888e-142
CP030323.1\|AWZ64995.1\|836508_837621_+\|aminotransferase-class-V-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	2.59996e-138
CP030323.1\|AWZ64088.1\|838853_839831_-\|gamma-hemolysin-component-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
CP030323.1\|AWZ62968.1\|853705_853957_+\|antitoxin-YefM	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	5.66738e-21
CP030323.1\|AWZ64502.1\|848645_849425_+\|bacterial-extracellular-solute-binding,-3-family-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.11829e-100
CP030323.1\|AWZ63495.1\|845967_846654_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184518	PRK14119, gpmA, phosphoglyceromutase; Provisional.	3.52864e-167
CP030323.1\|AWZ63860.1\|852454_852817_+\|putative-lipoprotein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	2.57351e-31
CP030323.1\|AWZ64805.1\|852835_853435_+\|thioredoxin-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	1.74649e-30
CP030323.1\|AWZ62740.1\|850949_852200_-\|femAB-family-protein	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
CP030323.1\|AWZ64802.1\|837631_838324_+\|6-carboxyhexanoate--CoA-ligase-family-protein	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	3.38132e-130
CP030323.1\|AWZ63790.1\|834160_835519_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
CP030323.1\|AWZ64473.1\|844775_845642_+\|cation-diffusion-facilitator-transporter-family-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	6.59628e-89
CP030323.1\|AWZ64224.1\|839832_840780_-\|gamma-hemolysin-component-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	8.96448e-91
CP030323.1\|AWZ62875.1\|838334_838802_+\|queT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00179425
CP030323.1\|AWZ62854.1\|849405_850125_+\|L-cystine-transport-system-permease-protein-TcyB	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.98247e-78
CP030323.1\|AWZ64694.1\|841347_842277_-\|gamma-hemolysin-component-A	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.31528e-96

>CP030323.1|AWZ62840.1|842768_844079_-|immunoglobulin-binding-protein-sbi
MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYTDKYFKYKGTIDKTVLSVFGNGYKSYIQPLKVEDQKNYVSKSYAQVRNYVTETLNTGKVLYAFYQNPNVVKAAITTAETAASIKNIFSSFTSFFK
>CP030323.1|AWZ64694.1|841347_842277_-|gamma-hemolysin-component-A
MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDLINYLPKNKIDSADVSQKLGYNIGGNFHSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFITTLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK
>CP030323.1|AWZ64175.1|841158_841284_-|hypothetical-protein
MNQPHNIKLFYRTLNLIITTDFYKNKVSRHGRYTNNTDEAI
>CP030323.1|AWZ64224.1|839832_840780_-|gamma-hemolysin-component-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKNTNHIKSMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSDLPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRIHNAFVNRNYTVKYEVNWKTHEIKVKGQN
>CP030323.1|AWZ64088.1|838853_839831_-|gamma-hemolysin-component-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>CP030323.1|AWZ62875.1|838334_838802_+|queT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPVALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLILASVLGSLISRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>CP030323.1|AWZ64802.1|837631_838324_+|6-carboxyhexanoate--CoA-ligase-family-protein
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYIKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDDRIDLNHYISFLESTPKQVVYETV
>CP030323.1|AWZ64995.1|836508_837621_+|aminotransferase-class-V-family-protein
MFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAECPNQNIQKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDVDRLFEILHQED
>CP030323.1|AWZ64183.1|835520_836528_+|biotin-synthase
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKEKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>CP030323.1|AWZ63790.1|834160_835519_+|adenosylmethionine-8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIVIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMAAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYDAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSQIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRNCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>CP030323.1|AWZ64473.1|844775_845642_+|cation-diffusion-facilitator-transporter-family-protein
MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADALNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQNAPRLFKEDDVVPNAITIIVSLISGLIMLIVFAVNQSLAKRTKSSSLNSAAKDNLSDSLVSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAYRNDILEVDEVQKVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGISSVYVHPEPDHL
>CP030323.1|AWZ63495.1|845967_846654_+|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
>CP030323.1|AWZ64103.1|847085_848525_+|H+-antiporter-2-family-protein
MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGIVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILAHASKNFSPTMSDYNGMNKIDMMNQIKVDTMLHGYHAGFLFALLITVVSFFCSFMLQGKKKEVDSRQ
>CP030323.1|AWZ64502.1|848645_849425_+|bacterial-extracellular-solute-binding,-3-family-protein
MKRLLFVMIAFVFILAACGNNSSKDKEANKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK
>CP030323.1|AWZ62854.1|849405_850125_+|L-cystine-transport-system-permease-protein-TcyB
MFLNLNSEQQHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKILRSISRVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYGQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS
>CP030323.1|AWZ64920.1|850121_850853_+|ABC-transporter-family-protein
MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLELLEKVGLTLVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVINEE
>CP030323.1|AWZ62740.1|850949_852200_-|femAB-family-protein
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEENPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPLLYKVQTYLNHKRR
>CP030323.1|AWZ63860.1|852454_852817_+|putative-lipoprotein
MKRFVAMVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
>CP030323.1|AWZ64805.1|852835_853435_+|thioredoxin-family-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
>CP030323.1|AWZ62968.1|853705_853957_+|antitoxin-YefM
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKDIDV

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Crispr_ID: CP030323_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_5

999048-999132

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_5

>merge|CP030323|5|999048-999132|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGACAAAAGTCAGCATACAATAATGTGCAAGTTGG

>CP030323|5|3|999048-999132|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGACA
AAAGTCAGCATACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ64868.1\|1001162_1001603_-\|marR-family-protein	unknown	unknown	gnl\|CDD\|197670
CP030323.1\|AWZ64451.1\|997847_998870_+\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
CP030323.1\|AWZ62787.1\|1003161_1004427_+\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP030323.1\|AWZ63970.1\|997228_997828_+\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP030323.1\|AWZ64079.1\|996536_996983_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP030323.1\|AWZ63300.1\|1004543_1007711_+\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP030323.1\|AWZ63410.1\|1008459_1008624_-\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ63330.1\|996037_996523_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP030323.1\|AWZ64988.1\|993716_994223_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP030323.1\|AWZ64925.1\|1007897_1008215_-\|putative-membrane-protein	unknown	unknown	unknown
CP030323.1\|AWZ62860.1\|991907_992513_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226628
CP030323.1\|AWZ62981.1\|992681_993686_+\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP030323.1\|AWZ63540.1\|994781_996041_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP030323.1\|AWZ63641.1\|999506_999857_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP030323.1\|AWZ63328.1\|1001765_1002530_+\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP030323.1\|AWZ63313.1\|996988_997222_+\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP030323.1\|AWZ63996.1\|999958_1001170_-\|major-Facilitator-Superfamily-protein	unknown	unknown	gnl\|CDD\|341042
CP030323.1\|AWZ64671.1\|1008756_1009665_+\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP030323.1\|AWZ63032.1\|994224_994719_-\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP030323.1\|AWZ62646.1\|1002570_1002690_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ64868.1\|1001162_1001603_-\|marR-family-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.06862e-14
CP030323.1\|AWZ64451.1\|997847_998870_+\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.93513e-164
CP030323.1\|AWZ62787.1\|1003161_1004427_+\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	8.95714e-143
CP030323.1\|AWZ63970.1\|997228_997828_+\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
CP030323.1\|AWZ64079.1\|996536_996983_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
CP030323.1\|AWZ63300.1\|1004543_1007711_+\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP030323.1\|AWZ63330.1\|996037_996523_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	1.17898e-50
CP030323.1\|AWZ64988.1\|993716_994223_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	9.7838e-65
CP030323.1\|AWZ62860.1\|991907_992513_+\|ABC-transporter-family-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114
CP030323.1\|AWZ62981.1\|992681_993686_+\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	1.97231e-131
CP030323.1\|AWZ63540.1\|994781_996041_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	6.25944e-158
CP030323.1\|AWZ63641.1\|999506_999857_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	6.89365e-20
CP030323.1\|AWZ63328.1\|1001765_1002530_+\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	2.21672e-37
CP030323.1\|AWZ63313.1\|996988_997222_+\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	1.33137e-25
CP030323.1\|AWZ63996.1\|999958_1001170_-\|major-Facilitator-Superfamily-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.14251e-72
CP030323.1\|AWZ64671.1\|1008756_1009665_+\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.09941e-42
CP030323.1\|AWZ63032.1\|994224_994719_-\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.70933e-97

>CP030323.1|AWZ64451.1|997847_998870_+|molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLNVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEEHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP030323.1|AWZ63970.1|997228_997828_+|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP030323.1|AWZ63313.1|996988_997222_+|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQGLTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP030323.1|AWZ64079.1|996536_996983_+|molybdopterin-synthase-catalytic-subunit
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP030323.1|AWZ63330.1|996037_996523_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP030323.1|AWZ63540.1|994781_996041_+|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKTVKAKVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP030323.1|AWZ63032.1|994224_994719_-|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP030323.1|AWZ64988.1|993716_994223_+|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP030323.1|AWZ62981.1|992681_993686_+|thiF-family-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDIPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP030323.1|AWZ62860.1|991907_992513_+|ABC-transporter-family-protein
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP030323.1|AWZ63641.1|999506_999857_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSEMDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP030323.1|AWZ63996.1|999958_1001170_-|major-Facilitator-Superfamily-protein
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAINLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP030323.1|AWZ64868.1|1001162_1001603_-|marR-family-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKYQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP030323.1|AWZ63328.1|1001765_1002530_+|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIETVKNKLQSEQVEVVGPIQMERDTHKDGKAKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP030323.1|AWZ62646.1|1002570_1002690_+|hypothetical-protein
MASTMERIVNVLFNRDDLIKMKKIDNINVKKISITRKLK
>CP030323.1|AWZ62787.1|1003161_1004427_+|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEIQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP030323.1|AWZ63300.1|1004543_1007711_+|swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSVQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGGNLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQYQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATMVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP030323.1|AWZ64925.1|1007897_1008215_-|putative-membrane-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP030323.1|AWZ63410.1|1008459_1008624_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP030323.1|AWZ64671.1|1008756_1009665_+|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIRATIKYLCLHYGLALIAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV

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Crispr_ID: CP030323_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_6

1246636-1246721

Orphan

Consensus_repeat	Method
ACAATGTAAGTTGGGGTGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_6

>merge|CP030323|6|1246636-1246721|CRISPRCasFinder
ACAATGTAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAAACAATGTAAGTTGGGGTGGGGCCTCAACA

>CP030323|6|4|1246636-1246721|CRISPRCasFinder
ACAATGTAAGTTGGGGTGGGGCCCCAACA	TAGAGAATTTCGAAAAGAAATTCTACAA
ACAATGTAAGTTGGGGTGGGGCCTCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ64132.1\|1245187_1246495_-\|ktr-system-potassium-uptake-protein-B	unknown	unknown	gnl\|CDD\|223246
CP030323.1\|AWZ64950.1\|1257120_1257501_+\|bacterial-regulatory,-gntR-family-protein	unknown	unknown	gnl\|CDD\|224639
CP030323.1\|AWZ62999.1\|1236935_1237076_-\|cyclic-lactone-autoinducer-peptide-family-protein	unknown	unknown	gnl\|CDD\|368676
CP030323.1\|AWZ63341.1\|1241752_1242496_-\|CAAX-protease-self-immunity-family-protein	unknown	unknown	gnl\|CDD\|376806
CP030323.1\|AWZ63676.1\|1238610_1239396_-\|hydrolase,-carbon-nitrogen-family	unknown	unknown	gnl\|CDD\|143607
CP030323.1\|AWZ64695.1\|1237877_1238012_+\|delta-hemolysin-domain-protein	unknown	unknown	gnl\|CDD\|173213
CP030323.1\|AWZ63579.1\|1242670_1242955_+\|10-kDa-chaperonin	unknown	unknown	gnl\|CDD\|178988
CP030323.1\|AWZ64803.1\|1251180_1252173_-\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
CP030323.1\|AWZ62630.1\|1248594_1249650_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369625
CP030323.1\|AWZ64300.1\|1246935_1248159_-\|putative-succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP030323.1\|AWZ62969.1\|1257497_1258394_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224054
CP030323.1\|AWZ64743.1\|1249671_1250688_+\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|369625
CP030323.1\|AWZ62856.1\|1256403_1256580_+\|putative-membrane-protein	unknown	unknown	unknown
CP030323.1\|AWZ64567.1\|1243030_1244647_+\|chaperonin-GroL	unknown	unknown	gnl\|CDD\|234573
CP030323.1\|AWZ63264.1\|1254122_1254299_+\|MAP-domain-protein	unknown	unknown	gnl\|CDD\|367591
CP030323.1\|AWZ62453.1\|1252561_1253998_+\|protein-map	unknown	unknown	gnl\|CDD\|367591
CP030323.1\|AWZ64292.1\|1240579_1241728_+\|putative-ser-Asp-rich-fibrinogen/bone-sialoprotein-binding-protein-SdrH	unknown	unknown	gnl\|CDD\|236768
CP030323.1\|AWZ64215.1\|1254577_1255864_-\|aminotransferase-class-I-and-II-family-protein	unknown	unknown	gnl\|CDD\|181512
CP030323.1\|AWZ64886.1\|1237072_1237642_-\|accessory-gene-regulator-protein-B	unknown	unknown	gnl\|CDD\|214819
CP030323.1\|AWZ63823.1\|1239756_1240383_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ64132.1\|1245187_1246495_-\|ktr-system-potassium-uptake-protein-B	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.39244e-80
CP030323.1\|AWZ64950.1\|1257120_1257501_+\|bacterial-regulatory,-gntR-family-protein	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	7.00479e-47
CP030323.1\|AWZ62999.1\|1236935_1237076_-\|cyclic-lactone-autoinducer-peptide-family-protein	gnl\|CDD\|368676	pfam05931, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	4.80574e-21
CP030323.1\|AWZ63341.1\|1241752_1242496_-\|CAAX-protease-self-immunity-family-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.12966e-11
CP030323.1\|AWZ63676.1\|1238610_1239396_-\|hydrolase,-carbon-nitrogen-family	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.11308e-126
CP030323.1\|AWZ64695.1\|1237877_1238012_+\|delta-hemolysin-domain-protein	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	4.75617e-14
CP030323.1\|AWZ63579.1\|1242670_1242955_+\|10-kDa-chaperonin	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP030323.1\|AWZ64803.1\|1251180_1252173_-\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	2.38027e-136
CP030323.1\|AWZ62630.1\|1248594_1249650_+\|hypothetical-protein	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.0236e-77
CP030323.1\|AWZ64300.1\|1246935_1248159_-\|putative-succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP030323.1\|AWZ64743.1\|1249671_1250688_+\|gamma-hemolysin-component-B	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	2.97231e-99
CP030323.1\|AWZ62969.1\|1257497_1258394_+\|ABC-transporter-family-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.46612e-72
CP030323.1\|AWZ64567.1\|1243030_1244647_+\|chaperonin-GroL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP030323.1\|AWZ63264.1\|1254122_1254299_+\|MAP-domain-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	2.73197e-17
CP030323.1\|AWZ62453.1\|1252561_1253998_+\|protein-map	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	1.9425e-33
CP030323.1\|AWZ64292.1\|1240579_1241728_+\|putative-ser-Asp-rich-fibrinogen/bone-sialoprotein-binding-protein-SdrH	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	2.32411e-07
CP030323.1\|AWZ64215.1\|1254577_1255864_-\|aminotransferase-class-I-and-II-family-protein	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	0
CP030323.1\|AWZ64886.1\|1237072_1237642_-\|accessory-gene-regulator-protein-B	gnl\|CDD\|214819	smart00793, AgrB, Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein. AgrB is involved in the proteolytic processing of AgrD and may have both proteolytic enzyme activity and a transporter facilitating the export of the processed AgrD peptide.	1.73876e-47
CP030323.1\|AWZ63823.1\|1239756_1240383_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	4.41942e-115

>CP030323.1|AWZ64132.1|1245187_1246495_-|ktr-system-potassium-uptake-protein-B
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITTSILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQNMGLVEKIGNSFFQSVTTRTAGFNSIDIAIINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP030323.1|AWZ64567.1|1243030_1244647_+|chaperonin-GroL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGANLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP030323.1|AWZ63579.1|1242670_1242955_+|10-kDa-chaperonin
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP030323.1|AWZ63341.1|1241752_1242496_-|CAAX-protease-self-immunity-family-protein
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEHKKYIIPWALLGFALVMIYQMVVSIVYTQIFGTQQTSPNTERLIVIARKIPLFIFFVSIVGPLLEEYVFRKVIFGELFNAIKGNRIVAFAIATTVSSLIFALAHNDYKFIPIYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP030323.1|AWZ64292.1|1240579_1241728_+|putative-ser-Asp-rich-fibrinogen/bone-sialoprotein-binding-protein-SdrH
MSYHWFTKMLLSTSILILSSSSLGLATDTVEAKDNLNGEKPTTNLNHNVTSPSVNSEINNNETGTPPESNQTGNEGTDSNSRDANPDSNNVKPDSNNQNPSPDSKPDPNNPNPVPNPKPDPDKPKPNPEPKPDPDNPKPKPDPKPDPDKPKPNPNPSPDPNQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP030323.1|AWZ63823.1|1239756_1240383_-|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKSFNPVEDRFVIKK
>CP030323.1|AWZ63676.1|1238610_1239396_-|hydrolase,-carbon-nitrogen-family
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNDEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP030323.1|AWZ64695.1|1237877_1238012_+|delta-hemolysin-domain-protein
MSCLILRIFILIKEGVISMAQDIISTISDLVKWIIDTVNKFTKK
>CP030323.1|AWZ64886.1|1237072_1237642_-|accessory-gene-regulator-protein-B
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTLAYILNIFLFTLITNLTFYLIRRHAHGAHAPSSFWCYVESILLFILLPLVILNFHINPLIMIILTVISLGVISVYAPAATKKKPIPVRLIKRKKYYAIIVSLTFFIITLIIKEPFAQFIQLGIIIEAITLLPIFFIKEDLK
>CP030323.1|AWZ62999.1|1236935_1237076_-|cyclic-lactone-autoinducer-peptide-family-protein
MNTLFNLFFDFITGILKNIGNIAAYSTCDFIMDEVEVPKELTQLHE
>CP030323.1|AWZ64300.1|1246935_1248159_-|putative-succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKNGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLEDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINNVDSNKLSLDIPSNHRPVTSDKNNKLITTIKDVASSYVDKDDIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP030323.1|AWZ62630.1|1248594_1249650_+|hypothetical-protein
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSPVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP030323.1|AWZ64743.1|1249671_1250688_+|gamma-hemolysin-component-B
MIKQLYKNITICSLAISTVLTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDEGKSKFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP030323.1|AWZ64803.1|1251180_1252173_-|sphingomyelin-phosphodiesterase
MVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>CP030323.1|AWZ62453.1|1252561_1253998_+|protein-map
MKFKSLITTTLALGVLASTGANFNNNEASAGAKPLDKSSSSLHHGYSKVHVPYAITVNGTSQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAEYTVYFKNGAKRVIDLKAGIYTADLINTSEIKAININVDTKKHIEDKKKDKANYQVPYTITVNGTSQNILSNLTFNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKAGIYTANLINSSDIKSININVDTKKHVENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWKNYKDLTRQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGPKAKADRYVPYTIAVNGTSTPILSKLKFSGDPRVGYSDITKKVKSVLKYDRGISDRELKFAKKATYTLHFKNGKKQVVNLNSNIFTPNLFSAKDIKKIDINVKQHTKSKKK
>CP030323.1|AWZ63264.1|1254122_1254299_+|MAP-domain-protein
MANDQGITKHDIGLAERAVYKVYFKNGSSKYVDLKTEYKDGKVFKATDIKKVDIELKF
>CP030323.1|AWZ64215.1|1254577_1255864_-|aminotransferase-class-I-and-II-family-protein
MNPLAQSLNEQLQQSNATAFAMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHEEVTTIVNAIKALADKGTKVIAVVDDAYYGLFYEDVYTQSLFTALSNLNSNAILPVRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHDVDPEELRKHLIEKYSIGVIALNATDIRIAFSCVEKEDIPHVFDSIAKAIDDLR
>CP030323.1|AWZ62856.1|1256403_1256580_+|putative-membrane-protein
MKHLTKIFVVLAIILFIVGYYLQATNHESQGIKLLLAAIMFMICAFISRSNDRRKNNK
>CP030323.1|AWZ64950.1|1257120_1257501_+|bacterial-regulatory,-gntR-family-protein
MKIILKNNSDFPIYEQIKQQVKQNILKGHVAPGEHLPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSSILKEKQFFTIENLVKELVNEAQAIEMSLEELQDILTFIYEEESS
>CP030323.1|AWZ62969.1|1257497_1258394_+|ABC-transporter-family-protein
MNAIELSNVNYSSDQFNLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVIRVLEEDMALNPIELKNRIGFVYAENYFNERWTTKQLEKMIAPFYRKWDHQVFEFYLEKFDLPINKSIKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDENKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRYQVVSGAIEDLDDELASLLIFEEHKRTGFIGLTEHAQVFKEILGHKVNITTPSIENLMVYLEKRKPKYHENIKLMEEGF

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Crispr_ID: CP030323_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_7

1306355-1306436

Orphan

Consensus_repeat	Method
AATGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP030323_7

>merge|CP030323|7|1306355-1306436|CRISPRCasFinder
AATGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCGAAAAAAGAAATTCTACAGGTAATGCAGGTTGGCGGGGCCCCAACA

>CP030323|7|5|1306355-1306436|CRISPRCasFinder
AATGCAAGTTGGCGGGGCCCCAACA	TAGAGAATTTCGAAAAAAGAAATTCTACAGGT
AATGCAGGTTGGCGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ63320.1\|1310467_1311685_-\|yihY-family-inner-membrane-domain-protein	unknown	unknown	gnl\|CDD\|224214
CP030323.1\|AWZ64229.1\|1301986_1303300_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223840
CP030323.1\|AWZ63056.1\|1307593_1307980_+\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ63003.1\|1312244_1312709_-\|low-molecular-weight-protein-tyrosine-phosphatase-PtpA	unknown	unknown	gnl\|CDD\|319971
CP030323.1\|AWZ64092.1\|1311962_1312238_-\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ64323.1\|1308692_1309736_+\|sensor-protein-VraS	unknown	unknown	gnl\|CDD\|226951
CP030323.1\|AWZ63174.1\|1301194_1301695_-\|ferritin	unknown	unknown	gnl\|CDD\|224445
CP030323.1\|AWZ63854.1\|1305103_1306090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226614
CP030323.1\|AWZ63600.1\|1298335_1298866_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378690
CP030323.1\|AWZ63186.1\|1312855_1313056_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227177
CP030323.1\|AWZ64318.1\|1295776_1296724_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982
CP030323.1\|AWZ64204.1\|1296804_1298166_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|225174
CP030323.1\|AWZ63172.1\|1300249_1300804_-\|exonuclease-family-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
CP030323.1\|AWZ63515.1\|1306618_1307377_+\|methionine-aminopeptidase,-type-I	unknown	unknown	gnl\|CDD\|235576
CP030323.1\|AWZ64145.1\|1299112_1300183_+\|impB/mucB/samB-family-protein	unknown	unknown	gnl\|CDD\|235035
CP030323.1\|AWZ63737.1\|1304218_1304671_+\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ64534.1\|1309725_1310355_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
CP030323.1\|AWZ64419.1\|1313067_1313730_+\|thermophilic-metalloprotease-family-protein	unknown	unknown	gnl\|CDD\|376723
CP030323.1\|AWZ63938.1\|1303301_1304033_+\|cobB/CobQ-like-glutamine-amidotransferase-domain-protein	unknown	unknown	gnl\|CDD\|225974
CP030323.1\|AWZ64617.1\|1307994_1308696_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227100

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ63320.1\|1310467_1311685_-\|yihY-family-inner-membrane-domain-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	7.61989e-85
CP030323.1\|AWZ63172.1\|1300249_1300804_-\|exonuclease-family-protein	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
CP030323.1\|AWZ64534.1\|1309725_1310355_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.44874e-79
CP030323.1\|AWZ63003.1\|1312244_1312709_-\|low-molecular-weight-protein-tyrosine-phosphatase-PtpA	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
CP030323.1\|AWZ64323.1\|1308692_1309736_+\|sensor-protein-VraS	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
CP030323.1\|AWZ63174.1\|1301194_1301695_-\|ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
CP030323.1\|AWZ64617.1\|1307994_1308696_+\|hypothetical-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
CP030323.1\|AWZ63186.1\|1312855_1313056_+\|hypothetical-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
CP030323.1\|AWZ64318.1\|1295776_1296724_+\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
CP030323.1\|AWZ64204.1\|1296804_1298166_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
CP030323.1\|AWZ63515.1\|1306618_1307377_+\|methionine-aminopeptidase,-type-I	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
CP030323.1\|AWZ64145.1\|1299112_1300183_+\|impB/mucB/samB-family-protein	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP030323.1\|AWZ63600.1\|1298335_1298866_+\|hypothetical-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.50924e-11
CP030323.1\|AWZ64419.1\|1313067_1313730_+\|thermophilic-metalloprotease-family-protein	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	8.18086e-81
CP030323.1\|AWZ63938.1\|1303301_1304033_+\|cobB/CobQ-like-glutamine-amidotransferase-domain-protein	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.79354e-120
CP030323.1\|AWZ63854.1\|1305103_1306090_-\|hypothetical-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.82639e-75
CP030323.1\|AWZ64229.1\|1301986_1303300_+\|hypothetical-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.56502e-98

>CP030323.1|AWZ63854.1|1305103_1306090_-|hypothetical-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYDRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKAHEISGENQIKSHILYEVLMIYRLLDSRYA
>CP030323.1|AWZ63737.1|1304218_1304671_+|hypothetical-protein
MQHEKMNDERNLTMKPTKVILRDASYVHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEIKFEFALFDSDMDNLKHMEYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVTKSDFNKFINELASLH
>CP030323.1|AWZ63938.1|1303301_1304033_+|cobB/CobQ-like-glutamine-amidotransferase-domain-protein
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>CP030323.1|AWZ64229.1|1301986_1303300_+|hypothetical-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>CP030323.1|AWZ63174.1|1301194_1301695_-|ferritin
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>CP030323.1|AWZ63172.1|1300249_1300804_-|exonuclease-family-protein
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>CP030323.1|AWZ64145.1|1299112_1300183_+|impB/mucB/samB-family-protein
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>CP030323.1|AWZ63600.1|1298335_1298866_+|hypothetical-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADAYFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>CP030323.1|AWZ64204.1|1296804_1298166_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>CP030323.1|AWZ64318.1|1295776_1296724_+|diacylglycerol-kinase
MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE
>CP030323.1|AWZ63515.1|1306618_1307377_+|methionine-aminopeptidase,-type-I
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>CP030323.1|AWZ63056.1|1307593_1307980_+|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>CP030323.1|AWZ64617.1|1307994_1308696_+|hypothetical-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>CP030323.1|AWZ64323.1|1308692_1309736_+|sensor-protein-VraS
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>CP030323.1|AWZ64534.1|1309725_1310355_+|response-regulator
MTIKVLFVDDHEMVRIGISSYLSTQRDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>CP030323.1|AWZ63320.1|1310467_1311685_-|yihY-family-inner-membrane-domain-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKEDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYAEDTNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>CP030323.1|AWZ64092.1|1311962_1312238_-|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>CP030323.1|AWZ63003.1|1312244_1312709_-|low-molecular-weight-protein-tyrosine-phosphatase-PtpA
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>CP030323.1|AWZ63186.1|1312855_1313056_+|hypothetical-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>CP030323.1|AWZ64419.1|1313067_1313730_+|thermophilic-metalloprotease-family-protein
MTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKTTMRYIMYLKVLI

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Crispr_ID: CP030323_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_8

1500984-1501063

Orphan

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_8

>merge|CP030323|8|1500984-1501063|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGTCCCACCCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCT

>CP030323|8|6|1500984-1501063|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTATGTTGGGTCCCACCCCAACTTGCATTGTT
TGTAGAATTTCTTTTCGAAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ64568.1\|1497922_1498612_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234811
CP030323.1\|AWZ64161.1\|1492134_1493082_+\|N-6-DNA-Methylase-family-protein	unknown	unknown	gnl\|CDD\|223897
CP030323.1\|AWZ64845.1\|1495258_1496377_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
CP030323.1\|AWZ62526.1\|1496692_1497748_-\|metallopeptidase-M24-family-protein	unknown	unknown	gnl\|CDD\|223085
CP030323.1\|AWZ64989.1\|1509468_1510437_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
CP030323.1\|AWZ63058.1\|1491517_1492012_+\|putative-thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
CP030323.1\|AWZ62973.1\|1493169_1494372_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
CP030323.1\|AWZ64675.1\|1508255_1509200_+\|acetyl-CoA-carboxylase,-carboxyl-transferase,-alpha-subunit	unknown	unknown	gnl\|CDD\|235580
CP030323.1\|AWZ64239.1\|1501365_1502307_+\|bifunctional-oligoribonuclease-and-PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
CP030323.1\|AWZ64083.1\|1496500_1496614_+\|putative-membrane-protein	unknown	unknown	unknown
CP030323.1\|AWZ63527.1\|1515441_1516710_+\|isocitrate-dehydrogenase,-NADP-dependent	unknown	unknown	gnl\|CDD\|180792
CP030323.1\|AWZ62851.1\|1512562_1513924_-\|amino-acid-permease-family-protein	unknown	unknown	gnl\|CDD\|224038
CP030323.1\|AWZ64070.1\|1498999_1499413_-\|universal-stress-family-protein	unknown	unknown	gnl\|CDD\|366180
CP030323.1\|AWZ63456.1\|1505974_1507204_+\|malic-enzyme,-NAD-binding-domain-protein	unknown	unknown	gnl\|CDD\|235976
CP030323.1\|AWZ64107.1\|1494617_1495118_-\|universal-stress-family-protein	unknown	unknown	gnl\|CDD\|366180
CP030323.1\|AWZ64418.1\|1510458_1512216_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
CP030323.1\|AWZ64015.1\|1514271_1515393_+\|citrate-synthase-2	unknown	unknown	gnl\|CDD\|184468
CP030323.1\|AWZ63027.1\|1502327_1505525_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
CP030323.1\|AWZ62781.1\|1507398_1508256_+\|acetyl-CoA-carboxylase,-carboxyl-transferase,-beta-subunit	unknown	unknown	gnl\|CDD\|235547
CP030323.1\|AWZ62877.1\|1499617_1500916_+\|DRTGG-domain-protein	unknown	unknown	gnl\|CDD\|226594

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ64568.1\|1497922_1498612_+\|hypothetical-protein	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.09103e-133
CP030323.1\|AWZ64161.1\|1492134_1493082_+\|N-6-DNA-Methylase-family-protein	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	2.04137e-56
CP030323.1\|AWZ64845.1\|1495258_1496377_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
CP030323.1\|AWZ62526.1\|1496692_1497748_-\|metallopeptidase-M24-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	6.97695e-126
CP030323.1\|AWZ64989.1\|1509468_1510437_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
CP030323.1\|AWZ63058.1\|1491517_1492012_+\|putative-thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	5.93419e-100
CP030323.1\|AWZ62973.1\|1493169_1494372_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
CP030323.1\|AWZ64675.1\|1508255_1509200_+\|acetyl-CoA-carboxylase,-carboxyl-transferase,-alpha-subunit	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
CP030323.1\|AWZ64239.1\|1501365_1502307_+\|bifunctional-oligoribonuclease-and-PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	3.24199e-98
CP030323.1\|AWZ63456.1\|1505974_1507204_+\|malic-enzyme,-NAD-binding-domain-protein	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
CP030323.1\|AWZ63527.1\|1515441_1516710_+\|isocitrate-dehydrogenase,-NADP-dependent	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
CP030323.1\|AWZ64070.1\|1498999_1499413_-\|universal-stress-family-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
CP030323.1\|AWZ62851.1\|1512562_1513924_-\|amino-acid-permease-family-protein	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
CP030323.1\|AWZ64107.1\|1494617_1495118_-\|universal-stress-family-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
CP030323.1\|AWZ64418.1\|1510458_1512216_+\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
CP030323.1\|AWZ64015.1\|1514271_1515393_+\|citrate-synthase-2	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
CP030323.1\|AWZ62877.1\|1499617_1500916_+\|DRTGG-domain-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
CP030323.1\|AWZ62781.1\|1507398_1508256_+\|acetyl-CoA-carboxylase,-carboxyl-transferase,-beta-subunit	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
CP030323.1\|AWZ63027.1\|1502327_1505525_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0

>CP030323.1|AWZ62877.1|1499617_1500916_+|DRTGG-domain-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>CP030323.1|AWZ64070.1|1498999_1499413_-|universal-stress-family-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>CP030323.1|AWZ64568.1|1497922_1498612_+|hypothetical-protein
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>CP030323.1|AWZ62526.1|1496692_1497748_-|metallopeptidase-M24-family-protein
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>CP030323.1|AWZ64083.1|1496500_1496614_+|putative-membrane-protein
MNDIDLIHYMLLMNVPAYVFLACLLYIAVRLGQKFMF
>CP030323.1|AWZ64845.1|1495258_1496377_+|alanine-dehydrogenase
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>CP030323.1|AWZ64107.1|1494617_1495118_-|universal-stress-family-protein
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>CP030323.1|AWZ62973.1|1493169_1494372_+|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLVERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>CP030323.1|AWZ64161.1|1492134_1493082_+|N-6-DNA-Methylase-family-protein
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGVGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEKGHSYSHYLLIEQAINALKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>CP030323.1|AWZ63058.1|1491517_1492012_+|putative-thiol-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSEASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>CP030323.1|AWZ64239.1|1501365_1502307_+|bifunctional-oligoribonuclease-and-PAP-phosphatase-NrnA
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGSKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNVLLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVNSWDEFEQLATALRTKLN
>CP030323.1|AWZ63027.1|1502327_1505525_+|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTIETVVLAKDNNGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKENGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSHEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKMFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSHIDTFEEMIKATKENANDVVLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>CP030323.1|AWZ63456.1|1505974_1507204_+|malic-enzyme,-NAD-binding-domain-protein
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVNPQDVYDKTMKLTDLQ
>CP030323.1|AWZ62781.1|1507398_1508256_+|acetyl-CoA-carboxylase,-carboxyl-transferase,-beta-subunit
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIPLTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYIEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>CP030323.1|AWZ64675.1|1508255_1509200_+|acetyl-CoA-carboxylase,-carboxyl-transferase,-alpha-subunit
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVEQLDSLESLSRDEIANDRFEKFRNIGSYIE
>CP030323.1|AWZ64989.1|1509468_1510437_+|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>CP030323.1|AWZ64418.1|1510458_1512216_+|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVTNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>CP030323.1|AWZ62851.1|1512562_1513924_-|amino-acid-permease-family-protein
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFTKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLGFMYLRYKRIAAKSNK
>CP030323.1|AWZ64015.1|1514271_1515393_+|citrate-synthase-2
MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>CP030323.1|AWZ63527.1|1515441_1516710_+|isocitrate-dehydrogenase,-NADP-dependent
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALTEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK

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Crispr_ID: CP030323_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_9

1855927-1856006

Orphan

Consensus_repeat	Method
CAGCTTACAATAAAGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_9

>merge|CP030323|9|1855927-1856006|CRISPRCasFinder
CAGCTTACAATAAAGTGCAAGTTGGCGGGTCCCCAACATAGTAGCTGCGGAAAGCCAGCTTACAATAATGTGCAAGTTGG

>CP030323|9|7|1855927-1856006|CRISPRCasFinder
CAGCTTACAATAAAGTGCAAGTTGG	CGGGTCCCCAACATAGTAGCTGCGGAAAGC
CAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ63384.1\|1864321_1864525_+\|putative-hypothetical-protein-YozC	unknown	unknown	unknown
CP030323.1\|AWZ63856.1\|1861635_1862904_+\|dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
CP030323.1\|AWZ62782.1\|1865510_1867397_+\|cobalamin-biosynthesis-CobT-VWA-domain-protein	unknown	unknown	gnl\|CDD\|226921
CP030323.1\|AWZ64681.1\|1850356_1850857_+\|glucose-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|225101
CP030323.1\|AWZ63271.1\|1853680_1854751_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|171505
CP030323.1\|AWZ64747.1\|1853159_1853669_+\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|366181
CP030323.1\|AWZ62694.1\|1849916_1850345_+\|methionine-R-sulfoxide-reductase	unknown	unknown	gnl\|CDD\|234692
CP030323.1\|AWZ64455.1\|1854767_1855382_+\|PAP2-superfamily-protein	unknown	unknown	gnl\|CDD\|239486
CP030323.1\|AWZ64376.1\|1869038_1870175_-\|telA-like-protein	unknown	unknown	gnl\|CDD\|377557
CP030323.1\|AWZ64797.1\|1863483_1864293_+\|glyoxalase/Bleomycin-resistance-/Dioxygenase-superfamily-protein	unknown	unknown	gnl\|CDD\|319934
CP030323.1\|AWZ64478.1\|1856523_1857183_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
CP030323.1\|AWZ63835.1\|1848457_1849297_+\|EDD,-DegV-family-domain-protein	unknown	unknown	gnl\|CDD\|273257
CP030323.1\|AWZ64903.1\|1850856_1851078_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226885
CP030323.1\|AWZ63944.1\|1858823_1861622_+\|oxoglutarate-dehydrogenase-(succinyl-transferring),-E1-component	unknown	unknown	gnl\|CDD\|236499
CP030323.1\|AWZ63258.1\|1857179_1858535_+\|signal-transduction-histidine-protein-kinase-ArlS	unknown	unknown	gnl\|CDD\|223715
CP030323.1\|AWZ63885.1\|1851269_1852760_+\|putative-CtpA-like-serine-protease	unknown	unknown	gnl\|CDD\|223864
CP030323.1\|AWZ62553.1\|1864705_1865497_+\|ATPase-associated-with-various-cellular-activities-family-protein	unknown	unknown	gnl\|CDD\|223786
CP030323.1\|AWZ63232.1\|1849390_1849924_+\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|237269
CP030323.1\|AWZ63871.1\|1847963_1848443_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
CP030323.1\|AWZ64632.1\|1867621_1868965_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|224039

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ63856.1\|1861635_1862904_+\|dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
CP030323.1\|AWZ62782.1\|1865510_1867397_+\|cobalamin-biosynthesis-CobT-VWA-domain-protein	gnl\|CDD\|226921	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism].	0
CP030323.1\|AWZ64681.1\|1850356_1850857_+\|glucose-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|225101	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism].	9.03019e-68
CP030323.1\|AWZ63271.1\|1853680_1854751_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|171505	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed.	3.82367e-132
CP030323.1\|AWZ64747.1\|1853159_1853669_+\|acetyltransferase-domain-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.78214e-09
CP030323.1\|AWZ62694.1\|1849916_1850345_+\|methionine-R-sulfoxide-reductase	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	9.76591e-81
CP030323.1\|AWZ64455.1\|1854767_1855382_+\|PAP2-superfamily-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.60547e-49
CP030323.1\|AWZ64376.1\|1869038_1870175_-\|telA-like-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	2.13715e-131
CP030323.1\|AWZ64797.1\|1863483_1864293_+\|glyoxalase/Bleomycin-resistance-/Dioxygenase-superfamily-protein	gnl\|CDD\|319934	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	8.74417e-08
CP030323.1\|AWZ64478.1\|1856523_1857183_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.42624e-89
CP030323.1\|AWZ63835.1\|1848457_1849297_+\|EDD,-DegV-family-domain-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	8.59745e-119
CP030323.1\|AWZ64903.1\|1850856_1851078_+\|hypothetical-protein	gnl\|CDD\|226885	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown].	1.53726e-28
CP030323.1\|AWZ63944.1\|1858823_1861622_+\|oxoglutarate-dehydrogenase-(succinyl-transferring),-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
CP030323.1\|AWZ63258.1\|1857179_1858535_+\|signal-transduction-histidine-protein-kinase-ArlS	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.73222e-49
CP030323.1\|AWZ63885.1\|1851269_1852760_+\|putative-CtpA-like-serine-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	7.13135e-124
CP030323.1\|AWZ62553.1\|1864705_1865497_+\|ATPase-associated-with-various-cellular-activities-family-protein	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.42262e-45
CP030323.1\|AWZ63232.1\|1849390_1849924_+\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|237269	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional.	4.15064e-107
CP030323.1\|AWZ63871.1\|1847963_1848443_+\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	8.71869e-81
CP030323.1\|AWZ64632.1\|1867621_1868965_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|224039	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism].	1.47543e-160

>CP030323.1|AWZ64455.1|1854767_1855382_+|PAP2-superfamily-protein
MSQWKRISLLIVFTLVFGIIAFFHESRLGKWIDNEVYEFIYSSESFITTSIMLGATKVGEVWAMLCISLLLVAYLMLKRHKIEALFFALTMALSGILNPALKNIFDRERPTLLRLIDITGFSFPSGHAMGSTAYFGSGIYLLNRLNQGNSKGILIGLCAAMILLISISRVYLGVHYPTDIIAGIIGGVFCIILSTLLLRNKLIN
>CP030323.1|AWZ63271.1|1853680_1854751_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MTKIAFTGGGTVGHVSVNLSLIPTALSQGYEALYIGSKNGIEREMIESQLPEIKYYPISSGKLRRYISLENAKDVFKVLKGILDARKVLKKEKPDLLFSKGGFVSVPVVIAAKSLNIPTIIHESDLTPGLANKIALKFAKKIYTTFEETLNYLPKEKADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSKKLNSIIRENLDALLQQYQVIHLTGKGLKDDQVKKSGYIQYEFVKEDLTDLLAITDTVISRAGSNAIYEFLTLRIPMLLVPLGLDQSRGDQIDNANHFADKGYAKAIDEEQLTAQILLQELNEMEQERTRIINNMKSYEQSYTKEALFDKMIKDALN
>CP030323.1|AWZ64747.1|1853159_1853669_+|acetyltransferase-domain-protein
MIRLGKMSDLDQILNLVEEAKELMKEHDNEQWDDQYPLLEHFEEDIAKDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFVIHRLTGSKEYKGAATELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKVGEQLMEYPPYDKGEPFYAYYKNLKE
>CP030323.1|AWZ63885.1|1851269_1852760_+|putative-CtpA-like-serine-protease
MDDKQHKSSSDDERAEIATSNQDQQTNSSKRVHLKRWQFISILIGTILITAVITVVAYIFINQKISGLNKTDQANLNKIENVYKILNSDYFKKQNSDKLSKAAIDGMVKELKDPYSEYLTKEQTKSFNEGVSGDFVGIGAEMQKKNDQIMVTSPMKGSPAERAGIRPKDVITKVNGKSIKGKALDEVVKDVRGKENTEVTLTVQRGSEEKDVKIKREKIHVKSVEYKKKGKVGIITINKFQNDTSGELKDAVLKAHKDGLKKIVLDLRNNPGGLLDEAVKMANIFIDKGKTVVKLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASASEVFTGALKDYHKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPDVTIDTPKYQSLNVIPNTKTFKVGDDDKNIKTIKIGLSALGYKVDNESTQFDQALENQVKAFQQANKLEVTGEFNKETNNKFTELLVEKANKHDDVLDKLINILK
>CP030323.1|AWZ64903.1|1850856_1851078_+|hypothetical-protein
MKNYSFYQFVMTVRGRHDDKGRLAEEIFDDLAFPKHDDDFNILSDYIETHGDFTLPMSVFDDLYEEYTEWLKF
>CP030323.1|AWZ64681.1|1850356_1850857_+|glucose-specific-phosphotransferase-enzyme-IIA-component
MFKKLFGKGKEVQKDIAIYAPLTGEYVKIEDIPDPVFAQKMMGEGFGINPTEGEVVSPIAGRVDNVFPTKHAIGLKADNGLELLVHIGLDTVQLDGEGFEVLVSSGDEVNVGDPLVRFNLEYINNNAKSVISPIIITNTDQAASINIYDENAVIKGETKVIDVTMN
>CP030323.1|AWZ62694.1|1849916_1850345_+|methionine-R-sulfoxide-reductase
MLKKDKSELTDIEYIVTQENGTEPPFMNEYWNHFAKGIYVDKISGKPLFTSEEKFHSECGWPSFSKALDDDEIIELVDKSFGMLRTEVRSEESNSHLGHVFNDGPKESGGLRYCINSAAIQFIPYEKLEELGYGDLISHFDK
>CP030323.1|AWZ63232.1|1849390_1849924_+|peptide-methionine-(S)-S-oxide-reductase
MTKEYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYEQVCTNQTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDEHQKKAAEFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKKNPVHYYQYQRGSGRKAFIESHWGNQNA
>CP030323.1|AWZ63835.1|1848457_1849297_+|EDD,-DegV-family-domain-protein
MTKQIIVTDSTSDLSKEYLEANNIHVIPLSLTIEGASYVDQVDITSEEFINHIENDEDVKTSQPAIGEFISAYEELGKDGAEIISIHLSSGLSGTFNTAYQASQMVDANVTVIDSKSISFGLGYQIQHLVELVKEGVSTSEIVNKLNHLRENIKLFVVIGQLNQLIKGGRISKTKGLIGNLMKIKPIGTLDDGRLELVHNARTQNSSIQYLKKEIAEFIGDHEIKSVGVAHANVIEYVDKLKKVFNEAFHVNNYDINVTTPVISAHTGQGAIGLVVLKK
>CP030323.1|AWZ63871.1|1847963_1848443_+|dihydrofolate-reductase
MTLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK
>CP030323.1|AWZ64478.1|1856523_1857183_+|response-regulator
MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR
>CP030323.1|AWZ63258.1|1857179_1858535_+|signal-transduction-histidine-protein-kinase-ArlS
MTKRKLRNNWIIVTTMITFVTIFLFCLIIIFFLKDTLHNSELDDAERSSSDINNLFHSKPVKDISALDLNASLGNFQEIIIYDEHNNKLFETSNDNTVRVEPGYEHRYFDRVIKKRYKGIDYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYIIALAFGVIATMITATISYVFSTQITKPLVSLSNKMIEIRRDGFQNKLQLNTNYEEIDNLANTFNEMMSQIEESFNQQRQFVEDASHELRTPLQIIQGHLNLIQRWGKKDPAVLEESLNISIEEMNRIIKLVEELLELTKGDVNDISSEAQTVHINDEIRSRIHSLKQLHPDYQFDTDLTSKNLEIKMKPHQFEQLFLIFIDNAIKYDVKNKKIKVKTRLKNKQKIIEITDNGIGIPEEDQDFIFDRFYRVDKSRSRSQGGNGLGLSIAQKIIQLNGGSIKIKSEINKGTTFKIIF
>CP030323.1|AWZ63944.1|1858823_1861622_+|oxoglutarate-dehydrogenase-(succinyl-transferring),-E1-component
MTNERKEVSEAPVNFGANLGLMLDLYDDFLQDPSSVPEDLQVLFSTIKNDDSIVPALKSTSSQNSDGTIKRVMRLIDNIRQYGHLKADIYPVNPPKRKHVPKLEIEDFDLDQQTLEGISAGIVSDHFADIYDNAYEAILRMEKRYKGPIAFEYTHINNNTERGWLKRRIETPYKVTLNNNEKRALFKQLAYVEGFEKYLHKNFVGAKRFSIEGVDALVPMLQRTITIAAKEGIKNIQIGMAHRGRLNVLTHVLEKPYEMMISEFMHTDPMKFLPEDGSLQLTAGWTGDVKYHLGGIKTTDSYGTMQRIALANNPSHLEIVAPVVEGRTRAAQDDTQRAGAPTTDHHKAMPIIIHGDAAYPGQGINFETMNLGNLKGYSTGGSLHIITNNRIGFTTEPIDARSTTYSTDVAKGYDVPIFHVNADDVEATIEAIDIAMEFRKEFHKDVVIDLVGYRRFGHNEMDEPSITNPVPYQNIRKHDSVEYVFGKKLVNEGVISEDEMNSFIEQVQKELRQAHDKINKADKMDNPDMEKPADLALPLQADEQSFTFDHLKEINDALLTYPDGFNILKKLNKVLEKRHEPFNKEDGLVDWAQAEQLAFATILQDGTPIRLTGQDSERGTFSHRHAVLHDEQTGETYTPLHHVPDQKATFDIHNSPLSEAAVVGFEYGYNVENKKSFNIWEAQYGDFANMSQMIFDNFLFSSRSKWGERSGLTLFLPHAYEGQGPEHSSARLERFLQLAAENNCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTSGGFEPILTESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYPYVKVLVADKYDLSYHGRIQRAAPAEGDGEIHKLVQNKIIENALKNN
>CP030323.1|AWZ63856.1|1861635_1862904_+|dihydrolipoyllysine-residue-succinyltransferase
MPEVKVPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLTEQLASEGDTVEVGQAIAVIGEGSGNASKENSNDNTPQQNEETNNKKEETTNKSADKAEVNQTTDDNQQRVNATPSARRYARENGVNLAEVSPKTNDLVRKEDIDKKQQAPASTQTTQQAPAKEEKKYNQYPTKPVIREKMSRRKKTAAKKLLEVSNNTAMLTTFNEVDMTNVMELRKRKKDQFMKDHDGTKLGFMSFFTKASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLES
>CP030323.1|AWZ64797.1|1863483_1864293_+|glyoxalase/Bleomycin-resistance-/Dioxygenase-superfamily-protein
MCGLRSITLGTTNIEQTKHFMVDILGLNCEELLENSIRFGDADISPGTRLQFIQVPSEQLEESHFVGIGLRTPTDSGLEEYAEILSSKEIPFTTTKELNGNKYFSFEDNNGHIFSIYSNENNYGVGLGMPSFESAVNPLHQVQGLGPVILKVNHVDITGQILTNIFGLEVFAEYQPFDNADYHVQVFKIGTGGLGGEIHLMPVETEMTMPEYGAVDQVEFETKDADFFNQAKSRLDEVEIPYQTLEQDDIESIRITENSGLSFIFTLQK
>CP030323.1|AWZ63384.1|1864321_1864525_+|putative-hypothetical-protein-YozC
MLHETWKERTPIKKVEVINTDAKKFTVSDMLTVGKQYDVINETEEYYQIIDNSGLIGGYYKTYFKEV
>CP030323.1|AWZ62553.1|1864705_1865497_+|ATPase-associated-with-various-cellular-activities-family-protein
MALKHYKNSDSTVFNDAKALFDLNKNILLKGPTGSGKTKLAETLSEVVDTPMHQVNCSVDLDTESLLGFKTIKTNAEGQQEIVFVDGPVIKAMKEGHILYIDEINMAKPETLPVLNGVLDYRRQITNPYTGEVIKAVPGFNVIAAINEGYVGTLPMNEALKNRFVVIHVDYIDGDILKNVIKEQSLLQDDKQIEQIIKFNEDLRTMSKQGQISEEAASIRALLDLCDLITVMPVERAIKRTIIDKLEDEREQQAIYNAVELNF
>CP030323.1|AWZ62782.1|1865510_1867397_+|cobalamin-biosynthesis-CobT-VWA-domain-protein
MSDRFIKFNDEQLDAKQVMMLQDLARLLLKNEQTQVKIQKFPYYNPVQNVLITSWFWSHRPSHIEMAGLKTDVMLAAYGYHMMDVQIVNEVVQDKTFKHPKFYQQLFKLLEDMRVLNSIKVERPSTAKLIDLRLDTRISYTESQIKVYRTKTQYTDLLFLYLEHAFLSQDFFDIPSIHSDLDDILVNMFLYLPNFFQNQNSEDNMYLAQRIMYQVDDILKEDMLNEYYYLPKTLYNTLASPEFEDLKRTDASQVDGQDDTSEDDDNQSEKADSKSADSESKGGAYLEMELHEGQNSETLGNDEAREGDATDDMTDMMTKKGKGSNDTLNREEGDAVGQSQAFQLDGVNKNVEIKWQIPEIEPQYVLEYQESKQDVQYEIKDLIQIIKKTIEREQRDARFNLTKGRLQKDLINWFIDDQYKLFYKKQDLSKSFDATFTLLIDASASMHDKMAETKKGVVLFHETLKALNIKHEILSFSEDAFDSDEHAQPNIINEIINYDYSTFEKDGPRIMALEPQDDNRDGVAIRVASERLMRRNQHQRFLIVFSDGEPSAFNYSQDGIIDTYEAVEMSRKFGIEVFNVFLSQDPITEDVEQTIHNIYGQYAIFVEGVAHLPGHLSPLLKKLLLKSL
>CP030323.1|AWZ64632.1|1867621_1868965_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MNKNTWVIGFTLFAMFFGAGNLIFPPNLGLDSGQFFWPAILAFVLTGIGLPLLGVIVGALDKEGYIGALNKISPKFSILFLIIIYLTIGPLFAIPRTASTSFEMTITPIIHSNSSIALFIFTIIYFIVVLYICLNPSKLIDRIGSLLTPLLLITILAMIIKGYLDFSGNSAGKGNEALYHSNFSSFAEGFTQGYLTMDAIAAIAFSMIVVNAVKLTGITKTNQIFKQTLTAGLIAAVALIFIYISLGYIGNHMPVSDMTLDQLKSKDRNIGTYLLTTMASTGFGSFGKYLLGIIVALACLTTACGLIVAVSEYFHRIVPKVSYKAFVLVFILMSFIIANQGLNAVISMSIPVLSIVYPVAITVVLLILIAKFIPTKRISQQIPVIIVFILSIFSVISKLGWLKINFIESLPLRAYSLEWFPVAIIATILGYLVGIFVKQDPIKYQQE
>CP030323.1|AWZ64376.1|1869038_1870175_-|telA-like-protein
MTENKSFKESHPLDDFISDKELSNTTIQKEKLTIEQQKQVDTISKQINPLDNEGLLAFGSGLQKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSVNPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSAQVDRITIQLQKHQTHLTRDIELLDTLYDKNKQYFDDLSLHIIAAQQKKLQLENEKLPQLQQQAQQSTNQMDIQQVADMQQFIDRLDKRIYDLQLSRQIALQTAPQIRMIQNVNQALAEKIQSSILTSIPLWKNQMAIALTLMRQRNAVAAQRAVTDTTNDLLTANAEMLKQNAIETATENERGIVDLDTLKRTQRNIIETIEETLIIQQHGREERQLAEKELQQLEQDLKSHLVNIKGPNKQS

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Crispr_ID: CP030323_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_10

2065269-2065361

Unclear

Consensus_repeat	Method
AGTTATCAATTTATTGATTACTGTTTCTTA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP030323_10

>merge|CP030323|10|2065269-2065361|CRISPRCasFinder
AGTTATCAATTTATTGATTACTGTTTCTTATGCATGAGCTTTAGCTCAGGCGTTCCGCTTATTAGTTATCAATTTATTGATTACTGTTTCTTA

>CP030323|10|8|2065269-2065361|CRISPRCasFinder
AGTTATCAATTTATTGATTACTGTTTCTTA	TGCATGAGCTTTAGCTCAGGCGTTCCGCTTATT
AGTTATCAATTTATTGATTACTGTTTCTTA

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ62482.1\|2059135_2060386_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
CP030323.1\|AWZ64202.1\|2073623_2073812_+\|ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
CP030323.1\|AWZ64185.1\|2065484_2066219_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
CP030323.1\|AWZ63017.1\|2057423_2058791_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
CP030323.1\|AWZ63631.1\|2056111_2056615_-\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|234650
CP030323.1\|AWZ64918.1\|2068121_2068679_-\|thioesterase-superfamily-protein	unknown	unknown	gnl\|CDD\|179847
CP030323.1\|AWZ64438.1\|2072806_2073181_-\|asp23-family-protein	unknown	unknown	gnl\|CDD\|224221
CP030323.1\|AWZ64919.1\|2067130_2068117_-\|fatty-acid/phospholipid-synthesis-protein-PlsX	unknown	unknown	gnl\|CDD\|235414
CP030323.1\|AWZ62936.1\|2074841_2075486_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
CP030323.1\|AWZ63552.1\|2064098_2064830_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
CP030323.1\|AWZ64301.1\|2058816_2059149_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234647
CP030323.1\|AWZ62751.1\|2064945_2065179_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
CP030323.1\|AWZ64859.1\|2071145_2072792_-\|DAK2-domain-fusion-YloV-family-protein	unknown	unknown	gnl\|CDD\|224378
CP030323.1\|AWZ63853.1\|2066211_2067138_-\|malonyl-CoA-acyl-carrier-protein-transacylase	unknown	unknown	gnl\|CDD\|223408
CP030323.1\|AWZ64734.1\|2074193_2074835_-\|thiamine-pyrophosphokinase	unknown	unknown	gnl\|CDD\|224480
CP030323.1\|AWZ64116.1\|2060385_2063952_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
CP030323.1\|AWZ62709.1\|2056802_2057078_-\|ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
CP030323.1\|AWZ64584.1\|2054921_2055272_-\|ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
CP030323.1\|AWZ64799.1\|2055374_2056112_-\|tRNA-(guanine(37)-N(1))-methyltransferase	unknown	unknown	gnl\|CDD\|234581
CP030323.1\|AWZ64069.1\|2068895_2070956_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ62482.1\|2059135_2060386_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
CP030323.1\|AWZ64202.1\|2073623_2073812_+\|ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
CP030323.1\|AWZ64185.1\|2065484_2066219_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.68137e-140
CP030323.1\|AWZ63017.1\|2057423_2058791_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
CP030323.1\|AWZ63631.1\|2056111_2056615_-\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	7.15666e-69
CP030323.1\|AWZ64918.1\|2068121_2068679_-\|thioesterase-superfamily-protein	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	2.33658e-99
CP030323.1\|AWZ64438.1\|2072806_2073181_-\|asp23-family-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
CP030323.1\|AWZ64919.1\|2067130_2068117_-\|fatty-acid/phospholipid-synthesis-protein-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	6.04516e-178
CP030323.1\|AWZ62936.1\|2074841_2075486_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.67332e-114
CP030323.1\|AWZ63552.1\|2064098_2064830_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
CP030323.1\|AWZ64301.1\|2058816_2059149_-\|hypothetical-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
CP030323.1\|AWZ62751.1\|2064945_2065179_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
CP030323.1\|AWZ64859.1\|2071145_2072792_-\|DAK2-domain-fusion-YloV-family-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
CP030323.1\|AWZ63853.1\|2066211_2067138_-\|malonyl-CoA-acyl-carrier-protein-transacylase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.79536e-133
CP030323.1\|AWZ64734.1\|2074193_2074835_-\|thiamine-pyrophosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.16343e-81
CP030323.1\|AWZ64116.1\|2060385_2063952_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
CP030323.1\|AWZ62709.1\|2056802_2057078_-\|ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
CP030323.1\|AWZ64584.1\|2054921_2055272_-\|ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
CP030323.1\|AWZ64799.1\|2055374_2056112_-\|tRNA-(guanine(37)-N(1))-methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.74382e-164
CP030323.1\|AWZ64069.1\|2068895_2070956_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0

>CP030323.1|AWZ62751.1|2064945_2065179_-|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>CP030323.1|AWZ63552.1|2064098_2064830_-|ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>CP030323.1|AWZ64116.1|2060385_2063952_-|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLIELLENISNEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIKSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKSSLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>CP030323.1|AWZ62482.1|2059135_2060386_-|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGAK
>CP030323.1|AWZ64301.1|2058816_2059149_-|hypothetical-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>CP030323.1|AWZ63017.1|2057423_2058791_-|signal-recognition-particle-protein
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>CP030323.1|AWZ62709.1|2056802_2057078_-|ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>CP030323.1|AWZ63631.1|2056111_2056615_-|16S-rRNA-processing-protein-RimM
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>CP030323.1|AWZ64799.1|2055374_2056112_-|tRNA-(guanine(37)-N(1))-methyltransferase
MKIDYLTLFPEMFAGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>CP030323.1|AWZ64584.1|2054921_2055272_-|ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>CP030323.1|AWZ64185.1|2065484_2066219_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>CP030323.1|AWZ63853.1|2066211_2067138_-|malonyl-CoA-acyl-carrier-protein-transacylase
MNKIAIIFPGQGAQKVGMAQDLYNNNDQATEILTSAANTLDFDILETMFTDEDGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>CP030323.1|AWZ64919.1|2067130_2068117_-|fatty-acid/phospholipid-synthesis-protein-PlsX
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYKLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKLAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>CP030323.1|AWZ64918.1|2068121_2068679_-|thioesterase-superfamily-protein
MKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
>CP030323.1|AWZ64069.1|2068895_2070956_-|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQNQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDCLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDNVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD
>CP030323.1|AWZ64859.1|2071145_2072792_-|DAK2-domain-fusion-YloV-family-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAVEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKLDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLIEMLAEDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>CP030323.1|AWZ64438.1|2072806_2073181_-|asp23-family-protein
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>CP030323.1|AWZ64202.1|2073623_2073812_+|ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>CP030323.1|AWZ64734.1|2074193_2074835_-|thiamine-pyrophosphokinase
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>CP030323.1|AWZ62936.1|2074841_2075486_-|ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLVLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG

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Crispr_ID: CP030323_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_11

2478131-2478216

Unclear

Consensus_repeat	Method
AGAGAAATTGGATTCCCAATTTCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_11

>merge|CP030323|11|2478131-2478216|CRISPRCasFinder
AGAGAAATTGGATTCCCAATTTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACACAGAGAAATTGGATTCCCAATTTCTACA

>CP030323|11|9|2478131-2478216|CRISPRCasFinder
AGAGAAATTGGATTCCCAATTTCTACA	GGCAATGCGAGTTGGGGTGTGGGCCCCAACAC
AGAGAAATTGGATTCCCAATTTCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ64285.1\|2481473_2482313_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP030323.1\|AWZ64771.1\|2469382_2470012_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
CP030323.1\|AWZ63973.1\|2471950_2473585_-\|malic-enzyme,-NAD-binding-domain-protein	unknown	unknown	gnl\|CDD\|237414
CP030323.1\|AWZ64136.1\|2467478_2468492_-\|glycolytic-operon-regulator	unknown	unknown	gnl\|CDD\|225263
CP030323.1\|AWZ64964.1\|2488968_2489157_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP030323.1\|AWZ63475.1\|2480980_2481466_-\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100053
CP030323.1\|AWZ63543.1\|2474923_2475868_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP030323.1\|AWZ63177.1\|2489201_2489852_-\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP030323.1\|AWZ64330.1\|2473766_2474354_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP030323.1\|AWZ63986.1\|2470714_2471617_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP030323.1\|AWZ64086.1\|2486714_2488700_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP030323.1\|AWZ64525.1\|2476970_2477882_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP030323.1\|AWZ64852.1\|2483860_2486707_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP030323.1\|AWZ63733.1\|2466415_2467426_-\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	unknown	unknown	gnl\|CDD\|273675
CP030323.1\|AWZ64156.1\|2469006_2469237_+\|hypothetical-protein	unknown	unknown	unknown
CP030323.1\|AWZ63037.1\|2475978_2476974_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP030323.1\|AWZ63741.1\|2482318_2483251_-\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP030323.1\|AWZ63907.1\|2478531_2479467_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP030323.1\|AWZ62769.1\|2490025_2490865_-\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451
CP030323.1\|AWZ63750.1\|2479533_2480973_-\|TPR-repeat-family-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ64285.1\|2481473_2482313_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	7.90899e-120
CP030323.1\|AWZ64771.1\|2469382_2470012_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	4.1716e-05
CP030323.1\|AWZ63973.1\|2471950_2473585_-\|malic-enzyme,-NAD-binding-domain-protein	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
CP030323.1\|AWZ64136.1\|2467478_2468492_-\|glycolytic-operon-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP030323.1\|AWZ64964.1\|2488968_2489157_-\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.07739e-27
CP030323.1\|AWZ63475.1\|2480980_2481466_-\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	9.46387e-30
CP030323.1\|AWZ63543.1\|2474923_2475868_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP030323.1\|AWZ63177.1\|2489201_2489852_-\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP030323.1\|AWZ64330.1\|2473766_2474354_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP030323.1\|AWZ63986.1\|2470714_2471617_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	5.99111e-153
CP030323.1\|AWZ64086.1\|2486714_2488700_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP030323.1\|AWZ64525.1\|2476970_2477882_-\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	2.63933e-170
CP030323.1\|AWZ64852.1\|2483860_2486707_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP030323.1\|AWZ63733.1\|2466415_2467426_-\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP030323.1\|AWZ63037.1\|2475978_2476974_-\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	7.82391e-173
CP030323.1\|AWZ63741.1\|2482318_2483251_-\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP030323.1\|AWZ63907.1\|2478531_2479467_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	1.60472e-153
CP030323.1\|AWZ62769.1\|2490025_2490865_-\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	3.51633e-42
CP030323.1\|AWZ63750.1\|2479533_2480973_-\|TPR-repeat-family-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	8.447e-06

>CP030323.1|AWZ64525.1|2476970_2477882_-|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKKSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP030323.1|AWZ63037.1|2475978_2476974_-|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNPQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP030323.1|AWZ63543.1|2474923_2475868_-|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP030323.1|AWZ64330.1|2473766_2474354_-|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP030323.1|AWZ63973.1|2471950_2473585_-|malic-enzyme,-NAD-binding-domain-protein
MKGIELLNNPFLNKGTAFTNEERKQLGLEGLLPANVRTLEQQAEQCYEQFKAKQTDFEKRLFLMAIFNRNRTLFYKLTSEHLVEFMPIIYDPVIAQSIEQYNENFSRPQDAVFLSVDRQDQIEQELRNVANGRDIRLIVVTDAEGILGIGDWGVDGVDIAIGKLIVYTAAAGINPSQVLPVSLDVGTNNEQLLKDDLYLGNRHKRVDDETYYAFVDKFVSAVRKEYPNALLHWEDFGRGHAKNILDKYEDTLPTFNDDIQGTGIVTLAGVLGALNISKVDYTNQTFLVYGGGTAGMGITNILKDELIKQGVSEEKANQHFYIMDKQGLLFDDMDDLTEAQQVFAKNRNEFSNTVNWKNLKEVIENIKPTVLIGTSTQTGAFTEDAVKEMLKHTERPMIFPLSNPTKLAEATAQDLLKWTNGKALIGTGIPYNDIEYNGVNYSIGQANNALMYPGLGLGLIASKAKKVNQQILSAASHALGGMVNPDEPGAAVLPPVEKIHQCSRAIAKAVAQSVIDQGLNAETIDDIDKAIEAEIWYPEYKSYI
>CP030323.1|AWZ63986.1|2470714_2471617_+|NAD-dependent-epimerase/dehydratase-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPNLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLISK
>CP030323.1|AWZ64771.1|2469382_2470012_-|hypothetical-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDETKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQSNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>CP030323.1|AWZ64156.1|2469006_2469237_+|hypothetical-protein
MGPNTEADEKSAYNNVQVGDGPQHSEIGFPISTDNASWRGPNTEAGGKSAYNNVQVGVGRRNKFCENIISVPPHSK
>CP030323.1|AWZ64136.1|2467478_2468492_-|glycolytic-operon-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP030323.1|AWZ63733.1|2466415_2467426_-|glyceraldehyde-3-phosphate-dehydrogenase,-type-I
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP030323.1|AWZ63907.1|2478531_2479467_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIMTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP030323.1|AWZ63750.1|2479533_2480973_-|TPR-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWEIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP030323.1|AWZ63475.1|2480980_2481466_-|bacterial-transferase-hexapeptide-family-protein
MRKFLSKTYHHTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANAIILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP030323.1|AWZ64285.1|2481473_2482313_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIVARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP030323.1|AWZ63741.1|2482318_2483251_-|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP030323.1|AWZ64852.1|2483860_2486707_-|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGAPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKLKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP030323.1|AWZ64086.1|2486714_2488700_-|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP030323.1|AWZ64964.1|2488968_2489157_-|hypothetical-protein
MFSVITRSKWIGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP030323.1|AWZ63177.1|2489201_2489852_-|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP030323.1|AWZ62769.1|2490025_2490865_-|staphyloxanthin-biosynthesis-protein,-putative
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKVVKSPVRKASQAKKVVKQPVQQASKKVVVNQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH

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Crispr_ID: CP030323_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030323_12

2524516-2524600

Orphan

Consensus_repeat	Method
TGTTGGGGCCCACCCCAACTCGCATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030323_12

>merge|CP030323|12|2524516-2524600|CRISPRCasFinder
TGTTGGGGCCCACCCCAACTCGCATTGCCTGTAGAAATTGGCGTTCCAATTTCTCTGTGTTGGGGCCCCACCCCAACTCGCATTG

>CP030323|12|10|2524516-2524600|CRISPRCasFinder
TGTTGGGGCCCACCCCAACTCGCATTG	CCTGTAGAAATTGGCGTTCCAATTTCTCTGT
GTTGGGGCCCCACCCCAACTCGCATTG

Protein	Signature genes	Signature genes Name	Protein_function
CP030323.1\|AWZ64048.1\|2513639_2514611_-\|fecCD-transport-family-protein	unknown	unknown	gnl\|CDD\|226965
CP030323.1\|AWZ63310.1\|2536497_2537502_-\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
CP030323.1\|AWZ62675.1\|2529393_2531172_-\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP030323.1\|AWZ64065.1\|2526687_2528202_-\|substrate-binding-domain-of-ABC-type-glycine-betaine-transport-system-family-protein	unknown	unknown	gnl\|CDD\|270328
CP030323.1\|AWZ64101.1\|2521386_2522892_+\|H+-symporter-family-protein	unknown	unknown	gnl\|CDD\|225646
CP030323.1\|AWZ64304.1\|2537485_2538196_-\|allophanate-hydrolase-subunit-1-family-protein	unknown	unknown	gnl\|CDD\|224960
CP030323.1\|AWZ63621.1\|2519660_2520527_+\|eamA-like-transporter-family-protein	unknown	unknown	gnl\|CDD\|223769
CP030323.1\|AWZ64483.1\|2511938_2512700_-\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226963
CP030323.1\|AWZ64122.1\|2534083_2536024_-\|lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
CP030323.1\|AWZ63175.1\|2525389_2526448_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
CP030323.1\|AWZ64881.1\|2528194_2529172_-\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224050
CP030323.1\|AWZ62846.1\|2523163_2524081_+\|putative-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
CP030323.1\|AWZ63949.1\|2518461_2518860_-\|nrdI-protein	unknown	unknown	gnl\|CDD\|224694
CP030323.1\|AWZ64757.1\|2512696_2513653_-\|fecCD-transport-family-protein	unknown	unknown	gnl\|CDD\|226964
CP030323.1\|AWZ62872.1\|2524688_2525231_-\|putative-5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
CP030323.1\|AWZ64081.1\|2516393_2518499_-\|ribonucleoside-diphosphate-reductase,-alpha-subunit	unknown	unknown	gnl\|CDD\|236069
CP030323.1\|AWZ63436.1\|2533414_2533900_-\|transposase-IS200-like-family-protein	unknown	unknown	gnl\|CDD\|376616
CP030323.1\|AWZ64922.1\|2515304_2516276_-\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
CP030323.1\|AWZ63637.1\|2520546_2521047_+\|7-cyano-7-deazaguanine-reductase	unknown	unknown	gnl\|CDD\|223851
CP030323.1\|AWZ62843.1\|2531186_2533064_-\|heme-ABC-exporter,-ATP-binding-protein-CcmA	unknown	unknown	gnl\|CDD\|223562

Protein	Function_ID	Function_description	E-value
CP030323.1\|AWZ64048.1\|2513639_2514611_-\|fecCD-transport-family-protein	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.32603e-150
CP030323.1\|AWZ63310.1\|2536497_2537502_-\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
CP030323.1\|AWZ62675.1\|2529393_2531172_-\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP030323.1\|AWZ64065.1\|2526687_2528202_-\|substrate-binding-domain-of-ABC-type-glycine-betaine-transport-system-family-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.75128e-152
CP030323.1\|AWZ64101.1\|2521386_2522892_+\|H+-symporter-family-protein	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
CP030323.1\|AWZ64304.1\|2537485_2538196_-\|allophanate-hydrolase-subunit-1-family-protein	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
CP030323.1\|AWZ63621.1\|2519660_2520527_+\|eamA-like-transporter-family-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
CP030323.1\|AWZ64483.1\|2511938_2512700_-\|ABC-transporter-family-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.44449e-150
CP030323.1\|AWZ64122.1\|2534083_2536024_-\|lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
CP030323.1\|AWZ63175.1\|2525389_2526448_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
CP030323.1\|AWZ64881.1\|2528194_2529172_-\|ABC-transporter-family-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	3.31335e-155
CP030323.1\|AWZ62846.1\|2523163_2524081_+\|putative-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.47588e-77
CP030323.1\|AWZ63949.1\|2518461_2518860_-\|nrdI-protein	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
CP030323.1\|AWZ64757.1\|2512696_2513653_-\|fecCD-transport-family-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.103e-121
CP030323.1\|AWZ62872.1\|2524688_2525231_-\|putative-5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	3.14113e-108
CP030323.1\|AWZ64081.1\|2516393_2518499_-\|ribonucleoside-diphosphate-reductase,-alpha-subunit	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP030323.1\|AWZ63436.1\|2533414_2533900_-\|transposase-IS200-like-family-protein	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	2.23101e-46
CP030323.1\|AWZ64922.1\|2515304_2516276_-\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.0974e-164
CP030323.1\|AWZ63637.1\|2520546_2521047_+\|7-cyano-7-deazaguanine-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
CP030323.1\|AWZ62843.1\|2531186_2533064_-\|heme-ABC-exporter,-ATP-binding-protein-CcmA	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0

>CP030323.1|AWZ62846.1|2523163_2524081_+|putative-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILSANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>CP030323.1|AWZ64101.1|2521386_2522892_+|H+-symporter-family-protein
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>CP030323.1|AWZ63637.1|2520546_2521047_+|7-cyano-7-deazaguanine-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>CP030323.1|AWZ63621.1|2519660_2520527_+|eamA-like-transporter-family-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>CP030323.1|AWZ63949.1|2518461_2518860_-|nrdI-protein
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>CP030323.1|AWZ64081.1|2516393_2518499_-|ribonucleoside-diphosphate-reductase,-alpha-subunit
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>CP030323.1|AWZ64922.1|2515304_2516276_-|ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEESEFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>CP030323.1|AWZ64048.1|2513639_2514611_-|fecCD-transport-family-protein
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>CP030323.1|AWZ64757.1|2512696_2513653_-|fecCD-transport-family-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFIITLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITIFLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>CP030323.1|AWZ64483.1|2511938_2512700_-|ABC-transporter-family-protein
MIQVGNLTKTINNQTILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFDNGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMDIQIEHIRNQRICLYFKD
>CP030323.1|AWZ62872.1|2524688_2525231_-|putative-5'(3')-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>CP030323.1|AWZ63175.1|2525389_2526448_-|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISSHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEHFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>CP030323.1|AWZ64065.1|2526687_2528202_-|substrate-binding-domain-of-ABC-type-glycine-betaine-transport-system-family-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRLMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>CP030323.1|AWZ64881.1|2528194_2529172_-|ABC-transporter-family-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTTMSAYPIVYDNQQIEVLYQHLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>CP030323.1|AWZ62675.1|2529393_2531172_-|ATP-dependent-DNA-helicase-RecQ
MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFVLDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>CP030323.1|AWZ62843.1|2531186_2533064_-|heme-ABC-exporter,-ATP-binding-protein-CcmA
MEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQEAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNVLSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>CP030323.1|AWZ63436.1|2533414_2533900_-|transposase-IS200-like-family-protein
MSSDTNSLAHTKWNCKYHIVFAPKYRRQVIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRNFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEKNRKRKKKE
>CP030323.1|AWZ64122.1|2534083_2536024_-|lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>CP030323.1|AWZ63310.1|2536497_2537502_-|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>CP030323.1|AWZ64304.1|2537485_2538196_-|allophanate-hydrolase-subunit-1-family-protein
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	2002669-2002694	0	1.0
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	2139645-2139670	0	1.0
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	2679170-2679195	0	1.0
CP030323_11	11.1\|2478158\|32\|CP030323\|CRISPRCasFinder	2478158-2478189	32	CP030323.1	964813-964844	0	1.0
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	964746-964771	1	0.962
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	1081526-1081551	1	0.962
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	1256742-1256767	1	0.962
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	1441577-1441602	1	0.962
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	2469121-2469146	1	0.962
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	2515058-2515083	1	0.962
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	2515114-2515139	1	0.962
CP030323_5	5.1\|999078\|25\|CP030323\|CRISPRCasFinder	999078-999102	25	CP030323.1	999022-999046	1	0.96
CP030323_5	5.1\|999078\|25\|CP030323\|CRISPRCasFinder	999078-999102	25	CP030323.1	1412733-1412757	1	0.96
CP030323_5	5.1\|999078\|25\|CP030323\|CRISPRCasFinder	999078-999102	25	CP030323.1	2139760-2139784	1	0.96
CP030323_8	8.1\|1501008\|32\|CP030323\|CRISPRCasFinder	1501008-1501039	32	CP030323.1	2143903-2143934	1	0.969
CP030323_11	11.1\|2478158\|32\|CP030323\|CRISPRCasFinder	2478158-2478189	32	CP030323.1	2002536-2002567	1	0.969
CP030323_11	11.1\|2478158\|32\|CP030323\|CRISPRCasFinder	2478158-2478189	32	CP030323.1	2002594-2002625	1	0.969
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	1160540-1160565	2	0.923
CP030323_1	1.1\|501441\|26\|CP030323\|CRISPRCasFinder	501441-501466	26	CP030323.1	1160878-1160903	2	0.923
CP030323_5	5.1\|999078\|25\|CP030323\|CRISPRCasFinder	999078-999102	25	CP030323.1	2139816-2139840	2	0.92
CP030323_11	11.1\|2478158\|32\|CP030323\|CRISPRCasFinder	2478158-2478189	32	CP030323.1	501367-501398	2	0.938
CP030323_12	12.1\|2524543\|31\|CP030323\|CRISPRCasFinder	2524543-2524573	31	CP030323.1	2483506-2483536	2	0.935

1. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 2002669-2002694, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

2. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 2139645-2139670, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

3. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 2679170-2679195, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

4. spacer 11.1|2478158|32|CP030323|CRISPRCasFinder matches to position: 964813-964844, mismatch: 0, identity: 1.0

ggcaatgcgagttggggtgtgggccccaacac	CRISPR spacer
ggcaatgcgagttggggtgtgggccccaacac	Protospacer
********************************

5. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 964746-964771, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

6. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 1081526-1081551, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

7. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 1256742-1256767, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctgtcgg	Protospacer
********************** ***

8. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 1441577-1441602, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagtagctggcgg	Protospacer
**************** *********

9. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 2469121-2469146, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

10. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 2515058-2515083, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

11. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 2515114-2515139, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

12. spacer 5.1|999078|25|CP030323|CRISPRCasFinder matches to position: 999022-999046, mismatch: 1, identity: 0.96

cggggccccaacacagaagctgaca	CRISPR spacer
cggggccccaacatagaagctgaca	Protospacer
*************.***********

13. spacer 5.1|999078|25|CP030323|CRISPRCasFinder matches to position: 1412733-1412757, mismatch: 1, identity: 0.96

cggggccccaacacagaagctgaca	CRISPR spacer
cggggccccaacatagaagctgaca	Protospacer
*************.***********

14. spacer 5.1|999078|25|CP030323|CRISPRCasFinder matches to position: 2139760-2139784, mismatch: 1, identity: 0.96

cggggccccaacacagaagctgaca	CRISPR spacer
cggggccccaacacagaagctggca	Protospacer
**********************.**

15. spacer 8.1|1501008|32|CP030323|CRISPRCasFinder matches to position: 2143903-2143934, mismatch: 1, identity: 0.969

ctatgttgggtcccaccccaacttgcattgtt	CRISPR spacer
ctatgttggggcccaccccaacttgcattgtt	Protospacer
********** *********************

16. spacer 11.1|2478158|32|CP030323|CRISPRCasFinder matches to position: 2002536-2002567, mismatch: 1, identity: 0.969

ggcaatgcgagttggggtgtgggccccaacac	CRISPR spacer
ggcaatgcaagttggggtgtgggccccaacac	Protospacer
********.***********************

17. spacer 11.1|2478158|32|CP030323|CRISPRCasFinder matches to position: 2002594-2002625, mismatch: 1, identity: 0.969

ggcaatgcgagttggggtgtgggccccaacac	CRISPR spacer
ggcaatgcaagttggggtgtgggccccaacac	Protospacer
********.***********************

18. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 1160540-1160565, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
*************.*.**********

19. spacer 1.1|501441|26|CP030323|CRISPRCasFinder matches to position: 1160878-1160903, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaagacagaagctggcgg	Protospacer
*********** *.************

20. spacer 5.1|999078|25|CP030323|CRISPRCasFinder matches to position: 2139816-2139840, mismatch: 2, identity: 0.92

cggggccccaacacagaagctgaca	CRISPR spacer
cggggccccaacatagaagctggca	Protospacer
*************.********.**

21. spacer 11.1|2478158|32|CP030323|CRISPRCasFinder matches to position: 501367-501398, mismatch: 2, identity: 0.938

ggcaatgcgagttggggtgtgggccccaacac	CRISPR spacer
ggcaatgcgagttggggtgagggccctaacac	Protospacer
******************* ******.*****

22. spacer 12.1|2524543|31|CP030323|CRISPRCasFinder matches to position: 2483506-2483536, mismatch: 2, identity: 0.935

cctgtagaaattggcgttccaatttctctgt	CRISPR spacer
cctgtagaaattggtgttccaatttctttgt	Protospacer
**************.************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030323_12	12.1\|2524543\|31\|CP030323\|CRISPRCasFinder	2524543-2524573	31	KC139649	Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds	9668-9698	7	0.774
CP030323_12	12.1\|2524543\|31\|CP030323\|CRISPRCasFinder	2524543-2524573	31	KC139636	Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds	9668-9698	7	0.774
CP030323_12	12.1\|2524543\|31\|CP030323\|CRISPRCasFinder	2524543-2524573	31	NC_025443	Salmonella phage 9NA, complete genome	7834-7864	7	0.774
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP024776	Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence	3826-3857	9	0.719
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP009062	Borreliella afzelii K78 plasmid lp28-1, complete sequence	16532-16563	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP018749	Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7	15178-15209	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP028869	Borreliella garinii strain 20047 plasmid lp28-7, complete sequence	11910-11941	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP028878	Borreliella bavariensis PBi plasmid lp28-7, complete sequence	4741-4772	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP028879	Borreliella bavariensis PBi plasmid lp28-9, complete sequence	11876-11907	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NC_018987	Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence	12713-12744	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NC_017412	Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence	17252-17283	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NC_017419	Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence	17030-17061	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NC_017408	Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence	14812-14843	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NC_015920	Borreliella bissettii DN127 plasmid lp56, complete sequence	16601-16632	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NC_011779	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence	16934-16965	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NC_001852	Borreliella burgdorferi B31 plasmid lp28-2, complete sequence	16891-16922	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP017219	Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence	14876-14907	10	0.688
CP030323_7	7.1\|1306380\|32\|CP030323\|CRISPRCasFinder	1306380-1306411	32	NZ_CP017215	Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence	11994-12025	15	0.531

1. spacer 12.1|2524543|31|CP030323|CRISPRCasFinder matches to KC139649 (Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds) position: , mismatch: 7, identity: 0.774

cctgtagaaattggcgttccaatt-tctctgt	CRISPR spacer
gatgtagaaattggcgtaccaattaaagctg-	Protospacer
  *************** ******    ***

2. spacer 12.1|2524543|31|CP030323|CRISPRCasFinder matches to KC139636 (Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds) position: , mismatch: 7, identity: 0.774

cctgtagaaattggcgttccaatt-tctctgt	CRISPR spacer
gatgtagaaattggcgtaccaattaaagctg-	Protospacer
  *************** ******    ***

3. spacer 12.1|2524543|31|CP030323|CRISPRCasFinder matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 7, identity: 0.774

cctgtagaaattggcgttccaatt-tctctgt	CRISPR spacer
gatgtagaaattggcgtaccaattaaagctg-	Protospacer
  *************** ******    ***

4. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP024776 (Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence) position: , mismatch: 9, identity: 0.719

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
tcaaggatttcgaaaaaagaaatcctaatttg	Protospacer
* .**.*****************.***

5. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP009062 (Borreliella afzelii K78 plasmid lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctatttcc	Protospacer
  .******** ****** ********.   .

6. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP018749 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctatttcc	Protospacer
  .******** ****** ********.   .

7. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP028869 (Borreliella garinii strain 20047 plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctatttcc	Protospacer
  .******** ****** ********.   .

8. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP028878 (Borreliella bavariensis PBi plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctatttcc	Protospacer
  .******** ****** ********.   .

9. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP028879 (Borreliella bavariensis PBi plasmid lp28-9, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctatttcc	Protospacer
  .******** ****** ********.   .

10. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

11. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NC_017412 (Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

12. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NC_017419 (Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

13. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

14. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NC_015920 (Borreliella bissettii DN127 plasmid lp56, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

15. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NC_011779 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

16. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NC_001852 (Borreliella burgdorferi B31 plasmid lp28-2, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

17. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP017219 (Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
acaagaatttctaaaaaacaaattctgttgcc	Protospacer
  .******** ****** *******.. * .

18. spacer 7.1|1306380|32|CP030323|CRISPRCasFinder matches to NZ_CP017215 (Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence) position: , mismatch: 15, identity: 0.531

---tagagaatttcgaaaaaagaaattctacaggt	CRISPR spacer
ggcaacagaatttgttttttagaaattcttgt---	Protospacer
    * *******       *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1374699 : 1385402

Staphylococcus_phage(63.64%)

transposase,integrase

attL 1371625:1371642|attR 1379964:1379981

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1371625:1371642	attL	NA	NA	NA	NA
AWZ63165.1\|1374699_1376346_+\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.6e-292	99.1
AWZ64740.1\|1377087_1377876_-	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	7.0e-140	95.4
AWZ62706.1\|1378269_1379562_+\|integrase	integrase core domain protein	A0A2L1IVA1	Escherichia_phage	2.6e-14	30.8
AWZ64749.1\|1379554_1380316_+	bacterial dnaA family protein	A0A059NT77	Lactococcus_phage	1.1e-54	44.2
1379964:1379981	attR	NA	NA	NA	NA
AWZ64041.1\|1380656_1380953_+	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWZ64935.1\|1381047_1381497_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AWZ63506.1\|1382181_1382532_+	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWZ63646.1\|1382584_1382776_-	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWZ63538.1\|1382920_1383076_+	hypothetical protein	A0A1P8L6A1	Staphylococcus_phage	1.4e-20	100.0
AWZ63323.1\|1383766_1384297_+	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	1.7e-09	32.5
AWZ63392.1\|1384547_1385402_+	peptidase M23 family protein	E5G070	Clostridium_phage	6.4e-06	37.9

DBSCAN-SWA_2

1390956 : 1433929

Staphylococcus_phage(94.29%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ64205.1\|1390956_1391529_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
AWZ64635.1\|1391629_1391971_-	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	2.8e-53	93.8
AWZ64461.1\|1392011_1392638_-	putative lipoprotein	A0A2H4PQM7	Staphylococcus_phage	5.8e-81	84.6
AWZ62607.1\|1392713_1393709_-	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	1.7e-66	92.7
AWZ64609.1\|1393789_1394404_-	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	1.7e-24	66.2
AWZ63277.1\|1394715_1395198_+	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	4.2e-79	97.9
AWZ63502.1\|1395357_1396836_+	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.4e-281	96.7
AWZ64815.1\|1396840_1397842_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.1e-185	97.6
AWZ62964.1\|1397838_1398096_-	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AWZ64733.1\|1398155_1398635_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.1e-84	98.7
AWZ63897.1\|1398615_1399386_+	prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	8.0e-141	98.0
AWZ63905.1\|1399679_1401272_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
AWZ62496.1\|1401643_1402837_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AWZ64382.1\|1402961_1403870_+	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AWZ64549.1\|1404081_1404915_+	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	1.3e-157	99.3
AWZ62992.1\|1405164_1405518_-	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
AWZ64487.1\|1405514_1405880_-	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	6.2e-59	98.3
AWZ63610.1\|1406135_1406438_-	putative membrane protein	NA	NA	NA	NA
AWZ63227.1\|1406695_1407409_+	transaldolase	M1PR54	Cyanophage	1.2e-18	34.5
AWZ64960.1\|1407877_1408498_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWZ64992.1\|1408664_1409300_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWZ63079.1\|1409597_1410041_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AWZ63784.1\|1410027_1410171_-	hypothetical protein	NA	NA	NA	NA
AWZ63870.1\|1410583_1411054_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	4.4e-81	97.4
AWZ64806.1\|1411252_1411477_+	hypothetical protein	NA	NA	NA	NA
AWZ62560.1\|1411752_1412607_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	4.9e-38	38.1
AWZ64024.1\|1413011_1413404_-	arsenate reductase	A0A2H4PQT9	Staphylococcus_phage	1.3e-70	98.5
AWZ63160.1\|1413421_1414711_-	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	4.8e-223	97.4
AWZ63349.1\|1415549_1417052_+	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	1.1e-29	98.6
AWZ62529.1\|1417532_1418576_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-195	98.5
AWZ63614.1\|1418582_1419215_+	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	2.4e-111	98.6
AWZ63577.1\|1419225_1420407_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	1.6e-225	99.2
AWZ64053.1\|1420419_1420884_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AWZ64931.1\|1421005_1422007_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	1.7e-183	98.8
AWZ64696.1\|1422121_1422238_+	hypothetical protein	NA	NA	NA	NA
AWZ63379.1\|1422240_1423068_+	alpha/beta hydrolase family protein	NA	NA	NA	NA
AWZ64821.1\|1423639_1424041_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWZ63512.1\|1424160_1424724_-	methyltransferase domain protein	A0A2H4PQV0	Staphylococcus_phage	3.5e-101	98.4
AWZ62791.1\|1424720_1425674_-	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWZ64735.1\|1425783_1426965_+	major Facilitator Superfamily protein	A0A2H4PQR6	Staphylococcus_phage	1.2e-217	99.5
AWZ64864.1\|1427256_1429671_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AWZ63051.1\|1429692_1430004_+	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	5.3e-51	98.1
AWZ64427.1\|1430329_1433929_+	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	2.6e-258	91.0

DBSCAN-SWA_3

1562864 : 1571907

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ64112.1\|1562864_1563869_+	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AWZ64108.1\|1563870_1564896_+\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AWZ62920.1\|1564918_1566058_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWZ63066.1\|1566076_1566337_+	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWZ64221.1\|1566611_1568891_+	protein-export membrane protein SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AWZ62848.1\|1569093_1571367_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.1e-64	29.5
AWZ63449.1\|1571388_1571907_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8

DBSCAN-SWA_4

1642550 : 1650862

Caulobacter_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ62813.1\|1642550_1644350_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0
AWZ63998.1\|1644573_1645680_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AWZ63302.1\|1645810_1646488_+	hypothetical protein	NA	NA	NA	NA
AWZ63721.1\|1646490_1647591_+	NIF3 family protein	A0A1S5V250	Saudi_moumouvirus	1.0e-08	30.6
AWZ64410.1\|1647704_1649051_+	helicase domain protein	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AWZ62491.1\|1649060_1649951_+	putative endonuclease 4	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	33.1
AWZ64684.1\|1650076_1650862_+	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-19	28.3

DBSCAN-SWA_5

1781586 : 1873311

Staphylococcus_phage(89.04%)

capsid,portal,holin,integrase,tail,protease,lysis,head

attL 1779616:1779640|attR 1825014:1825038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1779616:1779640	attL	NA	NA	NA	NA
AWZ62719.1\|1781586_1782624_-\|integrase	integrase	Q38086	Staphylococcus_phage	5.9e-179	99.7
AWZ62616.1\|1782796_1783336_-	pemK-like family protein	U5U4R0	Staphylococcus_phage	9.0e-14	33.1
AWZ64032.1\|1783475_1783643_-	hypothetical protein	Q4ZDJ4	Staphylococcus_virus	1.7e-24	100.0
AWZ63620.1\|1783842_1784028_-	hypothetical protein	A0A2I6PDS4	Staphylococcus_phage	2.3e-25	100.0
AWZ62892.1\|1784014_1784170_-	hypothetical protein	A0A2I6PDR9	Staphylococcus_phage	6.3e-21	100.0
AWZ62641.1\|1784181_1784889_-	helix-turn-helix family protein	G4KNM8	Staphylococcus_phage	1.0e-129	99.6
AWZ63867.1\|1785059_1785299_+	helix-turn-helix family protein	G4KNM9	Staphylococcus_phage	2.3e-38	100.0
AWZ64365.1\|1785311_1785572_+	putative transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
AWZ62907.1\|1785595_1786135_-	putative phi PVL orf 33-like protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
AWZ63147.1\|1786191_1786944_+	phage antirepressor KilAC domain protein	A0A1X9H0A0	Staphylococcus_phage	8.7e-140	100.0
AWZ63260.1\|1786960_1787155_+	hypothetical protein	A0A1X9H0A2	Staphylococcus_phage	1.5e-19	100.0
AWZ63431.1\|1787185_1787326_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
AWZ64503.1\|1787340_1787973_-	putative phage protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
AWZ63470.1\|1788031_1788352_+	hypothetical protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
AWZ63819.1\|1788602_1788863_+	hypothetical protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
AWZ64804.1\|1789143_1791087_+	AAA domain protein	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	99.2
AWZ64900.1\|1791088_1792009_+	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	3.0e-166	99.7
AWZ62492.1\|1792221_1792698_+	beta-lactamase superfamily domain protein	A0A1W6JPL3	Staphylococcus_phage	6.8e-82	96.9
AWZ64933.1\|1792698_1793169_+	single-stranded DNA-binding family protein	S4V682	Staphylococcus_phage	3.1e-79	96.2
AWZ63002.1\|1793198_1794083_+	dnaD domain protein	S4V6D4	Staphylococcus_phage	3.1e-136	96.6
AWZ64542.1\|1794089_1794308_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AWZ63050.1\|1794316_1794721_+	endodeoxyribonuclease RusA family protein	A0A0E3XBN4	Staphylococcus_phage	1.0e-70	98.5
AWZ63378.1\|1794733_1795102_+	PVL ORF-50-like family protein	I1W656	Staphylococcus_phage	6.3e-51	100.0
AWZ64174.1\|1795105_1795348_+	phage family protein	A0A1P8L6E3	Staphylococcus_phage	3.0e-41	100.0
AWZ62837.1\|1795362_1795614_+	hypothetical protein	G4KNP4	Staphylococcus_phage	4.1e-38	96.4
AWZ63788.1\|1795802_1795931_+	hypothetical protein	A0A2I6PDX3	Staphylococcus_phage	1.6e-14	95.2
AWZ63377.1\|1796060_1796222_+	hypothetical protein	W5R9K6	Staphylococcus_phage	1.4e-23	100.0
AWZ62836.1\|1796236_1796770_+	dUTPase family protein	A0A0H3U2Z8	Staphylococcus_phage	5.1e-94	98.9
AWZ63319.1\|1796806_1797013_+	hypothetical protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
AWZ62494.1\|1797009_1797159_+	transcriptional activator RinB family protein	R9QSU6	Staphylococcus_phage	1.8e-17	100.0
AWZ63662.1\|1797365_1797968_+	hypothetical protein	D2JLD8	Staphylococcus_phage	4.5e-107	99.5
AWZ64468.1\|1797964_1798168_+	hypothetical protein	R9QT57	Staphylococcus_phage	6.3e-29	100.0
AWZ63664.1\|1798195_1798612_+	phage transcriptional regulator, RinA family protein	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
AWZ62570.1\|1798843_1799143_+	HNH endonuclease family protein	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AWZ64501.1\|1799273_1799618_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWZ62938.1\|1799614_1801276_+	phage Terminase family protein	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AWZ62861.1\|1801291_1802479_+\|portal	phage portal protein, HK97 family	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AWZ63523.1\|1802462_1803200_+\|protease	clp protease family protein	C8CH20	Staphylococcus_phage	2.3e-129	100.0
AWZ63955.1\|1803223_1804369_+\|capsid	phage major capsid protein, HK97 family	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
AWZ64346.1\|1804388_1804673_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AWZ62578.1\|1804662_1804947_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWZ64274.1\|1804930_1805293_+\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
AWZ63154.1\|1805289_1805694_+	hypothetical protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
AWZ63437.1\|1805690_1806098_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AWZ62901.1\|1806098_1806743_+\|tail	phage major tail, phi13 family protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
AWZ64942.1\|1806868_1807009_+	bacterial Ig-like domain family protein	W5R8L9	Staphylococcus_phage	1.1e-16	100.0
AWZ63929.1\|1807058_1807409_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AWZ64833.1\|1807462_1807597_+	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	9.6e-18	100.0
AWZ64335.1\|1807653_1812165_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A1X9H084	Staphylococcus_phage	0.0e+00	90.8
AWZ63744.1\|1812161_1813646_+\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AWZ63238.1\|1813661_1817447_+	phage minor structural, N-terminal region domain protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.4
AWZ62985.1\|1817436_1817589_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AWZ63604.1\|1817635_1817923_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AWZ64773.1\|1818046_1818277_+	hypothetical protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
AWZ62493.1\|1818468_1818603_+	putative membrane protein	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
AWZ63997.1\|1818814_1819069_+\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AWZ62770.1\|1819080_1819836_+	CHAP domain protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AWZ63134.1\|1820026_1820518_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AWZ64130.1\|1821206_1821503_+	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWZ64037.1\|1821597_1822047_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AWZ64111.1\|1822727_1823078_+	complement inhibitor	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
AWZ64856.1\|1823130_1823322_-	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWZ64630.1\|1823466_1823622_+	hypothetical protein	A0A1P8L6A1	Staphylococcus_phage	1.4e-20	100.0
AWZ64892.1\|1824361_1837480_+	GA module family protein	NA	NA	NA	NA
1825014:1825038	attR	NA	NA	NA	NA
AWZ63625.1\|1837666_1837909_+	hypothetical protein	NA	NA	NA	NA
AWZ63809.1\|1837930_1842661_+	hypothetical protein	NA	NA	NA	NA
AWZ64817.1\|1842719_1843121_-	RNase H family protein	NA	NA	NA	NA
AWZ63732.1\|1843362_1844067_-	conserved hypothetical integral membrane family protein	A0A2H4J2N7	uncultured_Caudovirales_phage	8.4e-12	23.8
AWZ64158.1\|1844517_1844769_+	scaffold Nfu/NifU N terminal family protein	NA	NA	NA	NA
AWZ62613.1\|1844806_1845931_+	conserved virulence factor C	NA	NA	NA	NA
AWZ64543.1\|1845946_1846384_+	bacillithiol system oxidoreductase, YphP/YqiW family protein	NA	NA	NA	NA
AWZ64641.1\|1846807_1847764_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.6e-167	85.2
AWZ63871.1\|1847963_1848443_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	2.0e-73	79.9
AWZ63835.1\|1848457_1849297_+	EDD, DegV family domain protein	A0A0N9SI50	Staphylococcus_phage	3.0e-48	76.5
AWZ63232.1\|1849390_1849924_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AWZ62694.1\|1849916_1850345_+	methionine-R-sulfoxide reductase	NA	NA	NA	NA
AWZ64681.1\|1850356_1850857_+	glucose-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA
AWZ64903.1\|1850856_1851078_+	hypothetical protein	NA	NA	NA	NA
AWZ63885.1\|1851269_1852760_+\|protease	putative CtpA-like serine protease	A0A0R6PIZ1	Moraxella_phage	8.6e-22	28.5
AWZ64747.1\|1853159_1853669_+	acetyltransferase domain protein	NA	NA	NA	NA
AWZ63271.1\|1853680_1854751_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
AWZ64455.1\|1854767_1855382_+	PAP2 superfamily protein	NA	NA	NA	NA
AWZ64478.1\|1856523_1857183_+	response regulator	W8CYM9	Bacillus_phage	1.1e-34	33.8
AWZ63258.1\|1857179_1858535_+	signal transduction histidine-protein kinase ArlS	A0A1V0SGX0	Hokovirus	8.9e-10	25.0
AWZ63944.1\|1858823_1861622_+	oxoglutarate dehydrogenase (succinyl-transferring), E1 component	NA	NA	NA	NA
AWZ63856.1\|1861635_1862904_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
AWZ64797.1\|1863483_1864293_+	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein	NA	NA	NA	NA
AWZ63384.1\|1864321_1864525_+	putative hypothetical protein YozC	NA	NA	NA	NA
AWZ62553.1\|1864705_1865497_+	ATPase associated with various cellular activities family protein	R4TG24	Halovirus	3.3e-12	34.2
AWZ62782.1\|1865510_1867397_+	cobalamin biosynthesis CobT VWA domain protein	NA	NA	NA	NA
AWZ64632.1\|1867621_1868965_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
AWZ64376.1\|1869038_1870175_-	telA-like protein	A0A291I9K4	Lactobacillus_phage	7.4e-34	28.3
AWZ64812.1\|1870206_1870830_-\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	NA	NA	NA	NA
AWZ64306.1\|1870854_1871124_-	acylphosphatase family protein	NA	NA	NA	NA
AWZ63469.1\|1871282_1871591_+	hypothetical protein	NA	NA	NA	NA
AWZ64344.1\|1871761_1871962_+	cold shock protein CspA	Q9AZD3	Lactococcus_phage	8.4e-18	66.2
AWZ64383.1\|1872158_1872560_+	putative membrane protein	NA	NA	NA	NA
AWZ63735.1\|1872693_1873311_+\|protease	protease synthase and sporulation protein PAI 2	NA	NA	NA	NA

DBSCAN-SWA_6

1963755 : 1972531

Staphylococcus_phage(70.0%)

head,integrase

attL 1960831:1960848|attR 1979145:1979162

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1960831:1960848	attL	NA	NA	NA	NA
AWZ64563.1\|1963755_1964289_-\|head	putative phage head morphogenesis protein	M1Q184	Streptococcus_phage	7.8e-18	32.6
AWZ64899.1\|1964491_1964614_-	hypothetical protein	NA	NA	NA	NA
AWZ64319.1\|1964941_1965220_-	hypothetical protein	NA	NA	NA	NA
AWZ63091.1\|1965375_1965570_-	LSM domain protein	A0A1J0MG79	Staphylococcus_phage	2.8e-18	71.4
AWZ62889.1\|1965569_1965827_-	hypothetical protein	A0A1J0MF61	Staphylococcus_phage	1.4e-25	62.7
AWZ63987.1\|1965820_1966093_-	putative phage F-like protein	A0A1J0MFV1	Staphylococcus_phage	8.8e-26	62.5
AWZ64459.1\|1966297_1966549_-	hypothetical protein	NA	NA	NA	NA
AWZ64160.1\|1966565_1966721_-	hypothetical protein	NA	NA	NA	NA
AWZ63255.1\|1967291_1967477_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
AWZ62906.1\|1967810_1969103_+\|integrase	integrase core domain protein	A0A2L1IVA1	Escherichia_phage	2.6e-14	30.8
AWZ64004.1\|1969095_1969857_+	istB-like ATP binding family protein	A0A059NT77	Lactococcus_phage	1.1e-54	44.2
AWZ64530.1\|1970917_1971124_-	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.9e-12	56.7
AWZ63704.1\|1971419_1971632_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	3.1e-18	71.0
AWZ62927.1\|1972333_1972531_-	cro/C1-type HTH DNA-binding domain protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4
1979145:1979162	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2233092 : 2241565

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ63472.1\|2233092_2233659_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1
AWZ63237.1\|2233661_2234690_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
AWZ62512.1\|2234682_2236167_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.6e-44	31.5
AWZ63325.1\|2236145_2238335_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.8e-140	39.7
AWZ64133.1\|2238327_2238999_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWZ63544.1\|2239000_2239264_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWZ63931.1\|2239263_2239968_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	1.4e-46	41.2
AWZ64013.1\|2239971_2241096_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWZ63971.1\|2241082_2241565_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7

DBSCAN-SWA_8

2272777 : 2319464

Streptococcus_phage(28.57%)

tRNA,transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ64626.1\|2272777_2273419_-\|bacteriocin	putative bacteriocin ABC transporter family protein	G9BWD6	Planktothrix_phage	1.7e-19	33.7
AWZ64965.1\|2273415_2273736_-	hypothetical protein	NA	NA	NA	NA
AWZ64380.1\|2273738_2275703_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
AWZ62821.1\|2275746_2276034_-\|bacteriocin	bacteriocin family protein	NA	NA	NA	NA
AWZ62788.1\|2277023_2278670_-\|transposase	transposase DDE domain protein	A0A146ICT8	Staphylococcus_phage	3.7e-292	99.3
AWZ63785.1\|2279065_2279596_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWZ64377.1\|2279682_2279859_-	hypothetical protein	NA	NA	NA	NA
AWZ64871.1\|2280057_2281044_+	lipoyltransferase and lipoate-ligase family protein	NA	NA	NA	NA
AWZ63560.1\|2281124_2281343_-	IDEAL domain protein	NA	NA	NA	NA
AWZ63586.1\|2281552_2282122_+	comK family protein	NA	NA	NA	NA
AWZ62574.1\|2282610_2284122_-	5'-nucleotidase, C-terminal domain protein	NA	NA	NA	NA
AWZ63876.1\|2284260_2285619_-	cation transport family protein	NA	NA	NA	NA
AWZ64835.1\|2285635_2287945_-	trypsin-like peptidase domain protein	W5SAB9	Pithovirus	2.1e-11	27.4
AWZ62980.1\|2288175_2288973_-	integral membrane, YkoY family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
AWZ63981.1\|2289280_2290843_-	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.2e-36	28.2
AWZ63107.1\|2290842_2291094_-	yueH-like family protein	NA	NA	NA	NA
AWZ63140.1\|2291083_2292568_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
AWZ62986.1\|2293000_2294176_+	processive diacylglycerol glucosyltransferase	NA	NA	NA	NA
AWZ64262.1\|2294257_2294473_-	hypothetical protein	NA	NA	NA	NA
AWZ63556.1\|2294561_2295344_+	putative glycolipid permease LtaA	NA	NA	NA	NA
AWZ63116.1\|2295456_2295966_-	hypothetical protein	NA	NA	NA	NA
AWZ64758.1\|2296700_2297552_-	hhH-GPD superbase excision DNA repair family protein	NA	NA	NA	NA
AWZ63223.1\|2297553_2298279_-	hypothetical protein	NA	NA	NA	NA
AWZ62827.1\|2298444_2299203_-	esterase family protein	NA	NA	NA	NA
AWZ63371.1\|2299345_2300914_-	amino acid carrier family protein	NA	NA	NA	NA
AWZ62638.1\|2301255_2302341_+	hypothetical protein	NA	NA	NA	NA
AWZ64325.1\|2302537_2303308_-	enoyl-[acyl-carrier-protein] reductase [NADPH] FabI	NA	NA	NA	NA
AWZ64423.1\|2303586_2305431_-	sodium/hydrogen exchanger family protein	NA	NA	NA	NA
AWZ64793.1\|2305440_2306826_-	magnesium transporter	NA	NA	NA	NA
AWZ62662.1\|2306846_2307701_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA
AWZ64055.1\|2307697_2308507_-	ATP-NAD kinase family protein	NA	NA	NA	NA
AWZ63485.1\|2308523_2309159_-	putative RelA/SpoT domain protein	NA	NA	NA	NA
AWZ63293.1\|2309175_2309523_-	hypothetical protein	NA	NA	NA	NA
AWZ63419.1\|2309708_2310302_+	CYTH domain protein	NA	NA	NA	NA
AWZ64430.1\|2310405_2310771_+	globin family protein	NA	NA	NA	NA
AWZ63001.1\|2310793_2311600_+	thioredoxin family protein	NA	NA	NA	NA
AWZ64827.1\|2312059_2313868_-	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	5.5e-47	24.5
AWZ64237.1\|2313915_2314902_-	competence CoiA-like family protein	NA	NA	NA	NA
AWZ64177.1\|2315022_2315742_-	adapter protein MecA	NA	NA	NA	NA
AWZ63468.1\|2316112_2316508_-	regulatory protein spx	NA	NA	NA	NA
AWZ63862.1\|2316802_2317792_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AWZ64276.1\|2317817_2319464_-\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.6e-292	99.1

DBSCAN-SWA_9

2411359 : 2429368

Staphylococcus_phage(79.17%)

integrase,terminase,coat

attL 2410377:2410398|attR 2431041:2431062

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2410377:2410398	attL	NA	NA	NA	NA
AWZ64828.1\|2411359_2411545_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AWZ64157.1\|2412253_2412811_+	putative penicillin binding protein	A0A1W6JQE5	Staphylococcus_phage	1.4e-70	73.8
AWZ64195.1\|2412888_2413689_-	enterotoxin type B	A0A097PAT7	Streptococcus_pyogenes_phage	1.0e-53	49.4
AWZ64689.1\|2413996_2414566_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.0e-100	97.9
AWZ62707.1\|2414562_2414904_-	putative pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	3.8e-58	99.1
AWZ64072.1\|2414906_2415434_-\|coat	putative spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
AWZ63465.1\|2415484_2415703_-	hypothetical protein	NA	NA	NA	NA
AWZ64203.1\|2415720_2416299_-	putative pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	1.4e-28	38.4
AWZ63537.1\|2416310_2416652_-	putative saPI1 ORF8-like protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
AWZ64687.1\|2417168_2417810_-	putative saPI1 ORF9-like protein	Q4ZE67	Staphylococcus_phage	1.5e-108	91.5
AWZ63214.1\|2417806_2418091_-	putative pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.9e-47	95.7
AWZ63152.1\|2418092_2418455_-	putative interference protein with phage growth	A0A1W6JQD5	Staphylococcus_phage	8.9e-66	99.2
AWZ63458.1\|2418740_2420210_-	virulence-associated E family protein	A0A1W6JQD6	Staphylococcus_phage	2.9e-288	99.0
AWZ64857.1\|2420226_2421096_-	primase C terminal 1 family protein	A0A1W6JQL5	Staphylococcus_phage	3.4e-156	92.7
AWZ64642.1\|2421159_2421480_-	hypothetical protein	Q4ZE75	Staphylococcus_phage	1.3e-20	51.9
AWZ63589.1\|2421482_2421692_-	putative pathogenicity island protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
AWZ63085.1\|2421684_2421831_-	putative membrane protein	NA	NA	NA	NA
AWZ62586.1\|2421842_2422115_-	putative pathogenicity island DNA-binding protein	Q4ZE77	Staphylococcus_phage	9.7e-41	90.0
AWZ62592.1\|2422107_2422371_-	helix-turn-helix family protein	A0A2H4J9X2	uncultured_Caudovirales_phage	3.1e-36	94.8
AWZ64608.1\|2422563_2422896_+	helix-turn-helix family protein	A0A1J0MFC1	Staphylococcus_phage	1.6e-37	74.5
AWZ63553.1\|2422907_2423366_+	hypothetical protein	A0A0H4J322	Staphylococcus_phage	5.1e-66	83.0
AWZ63505.1\|2423382_2423814_+	hypothetical protein	Q4ZCB6	Staphylococcus_virus	5.1e-36	56.0
AWZ62857.1\|2423883_2424612_+	toxin beta-grasp domain protein	A0EX09	Staphylococcus_phage	2.3e-28	35.4
AWZ64374.1\|2424635_2425364_+	toxin beta-grasp domain protein	A0EX09	Staphylococcus_phage	5.5e-22	31.8
AWZ62859.1\|2425452_2426673_+\|integrase	phage integrase family protein	Q4ZE80	Staphylococcus_phage	6.4e-100	47.5
AWZ62576.1\|2426815_2427637_-	NLPA lipofamily protein	NA	NA	NA	NA
AWZ62891.1\|2427654_2428308_-	methionine import system permease protein MetP	NA	NA	NA	NA
AWZ64094.1\|2428342_2429368_-	methionine import ATP-binding protein MetN 2	G9BWD6	Planktothrix_phage	9.4e-28	36.8
2431041:2431062	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2511938 : 2536024

uncultured_Caudovirales_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ64483.1\|2511938_2512700_-	ABC transporter family protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6
AWZ64757.1\|2512696_2513653_-	fecCD transport family protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWZ64048.1\|2513639_2514611_-	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AWZ64922.1\|2515304_2516276_-	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	2.7e-170	91.0
AWZ64081.1\|2516393_2518499_-	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWZ63949.1\|2518461_2518860_-	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWZ63621.1\|2519660_2520527_+	eamA-like transporter family protein	NA	NA	NA	NA
AWZ63637.1\|2520546_2521047_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWZ64101.1\|2521386_2522892_+	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWZ62846.1\|2523163_2524081_+	putative lipid kinase	A0A1V0SBJ0	Catovirus	6.2e-07	22.0
AWZ62872.1\|2524688_2525231_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWZ63175.1\|2525389_2526448_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	1.4e-21	26.4
AWZ64065.1\|2526687_2528202_-	substrate binding domain of ABC-type glycine betaine transport system family protein	NA	NA	NA	NA
AWZ64881.1\|2528194_2529172_-	ABC transporter family protein	G3M9Y6	Bacillus_virus	5.4e-25	33.3
AWZ62675.1\|2529393_2531172_-	ATP-dependent DNA helicase RecQ	A0A2P1EM61	Moumouvirus	6.5e-77	36.8
AWZ62843.1\|2531186_2533064_-	heme ABC exporter, ATP-binding protein CcmA	A0A2K9L3Z8	Tupanvirus	4.3e-55	30.6
AWZ63436.1\|2533414_2533900_-\|transposase	transposase IS200 like family protein	A0A1P8BMC0	Lactococcus_phage	3.8e-19	35.4
AWZ64122.1\|2534083_2536024_-	lipoteichoic acid synthase	W6LM83	Streptococcus_phage	1.3e-110	39.5

DBSCAN-SWA_11

2539172 : 2546992

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ62902.1\|2539172_2540324_-	aminodeoxychorismate synthase, component I	S4VNU7	Pandoravirus	2.1e-23	36.1
AWZ63764.1\|2540307_2540901_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	6.8e-39	44.0
AWZ64513.1\|2541251_2541920_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWZ63817.1\|2541921_2542341_+	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWZ62555.1\|2542344_2543058_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWZ64150.1\|2543156_2543741_+	putative membrane protein	NA	NA	NA	NA
AWZ63263.1\|2544020_2544461_+	electron transfer DM13 family protein	NA	NA	NA	NA
AWZ63855.1\|2544802_2545276_+	doxX family protein	NA	NA	NA	NA
AWZ63919.1\|2545250_2545937_+	response regulator	NA	NA	NA	NA
AWZ63572.1\|2545936_2546992_+	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

Anti-CRISPR protein detection

Acr_ID: CP030323.1|AWZ64806.1|1411252_1411477_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP030323.1|AWZ64806.1|1411252_1411477_+|hypothetical-protein

1411252_1411477_+

74 aa aa

1390956-1433929

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP030323_5	Orphan	5.1\|999078\|25\|CP030323\|CRISPRCasFinder	999078-999102	25	1412733-1412757	1

1. spacer 5.1|999078|25|CP030323|CRISPRCasFinder matches to CP030323 position: 1412733-1412757, mismatch: 1

cggggccccaacacagaagctgaca	CRISPR spacer
cggggccccaacatagaagctgaca	Protospacer
*************.***********

2. CP030324

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1161 : 16355

Staphylococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWZ65000.1\|1161_2628_-	ABC transporter family protein	A0A2I4R674	Erysipelothrix_phage	3.9e-67	37.9
AWZ65023.1\|3101_3776_+\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	1.7e-126	97.3
AWZ65024.1\|3915_4590_+	response regulator	NA	NA	NA	NA
AWZ65018.1\|4586_4769_+	putative membrane protein	NA	NA	NA	NA
AWZ65012.1\|4865_5468_+	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	Q6XLV6	Feldmannia_irregularis_virus	2.8e-08	29.6
AWZ65030.1\|5592_6513_+	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-41	42.2
AWZ65025.1\|6553_7243_+	ABC-2 transporter family protein	NA	NA	NA	NA
AWZ65001.1\|7256_7460_+	bacitracin resistance BacA family protein	NA	NA	NA	NA
AWZ65017.1\|7489_8164_+\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	1.7e-126	97.3
AWZ65011.1\|8340_8940_+	streptomycin adenylyltransferase family protein	E4ZFP8	Streptococcus_phage	1.2e-115	99.5
AWZ65016.1\|8936_9479_+	acetyltransferase family protein	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
AWZ65021.1\|9571_10366_+	aminoglycoside 3'-phosphotransferase	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
AWZ65008.1\|10848_10977_+	putative hTH domain protein	E4ZFP5	Streptococcus_phage	6.2e-14	100.0
AWZ65005.1\|11018_11693_-	DDE domain protein	A0A0N9SKD3	Staphylococcus_phage	6.8e-128	99.6
AWZ65019.1\|12433_13012_-	resolvase, N terminal domain protein	A0A0A7NPV4	Enterobacteria_phage	4.9e-42	51.7
AWZ65027.1\|13275_13656_-	methicillin resistance regulatory protein MecI	NA	NA	NA	NA
AWZ65015.1\|13645_15403_-	regulatory protein BlaR1	NA	NA	NA	NA
AWZ65026.1\|15509_16355_+	beta-lactamase	A0A1B0VBP7	Salmonella_phage	5.7e-31	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030323

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. CP030324

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection