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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP030339 Escherichia coli strain AR_451 plasmid unnamed3 0 crisprs NA 0 0 0 0
CP030334 Escherichia coli strain AR_451 plasmid unnamed7 0 crisprs NA 0 0 0 0
CP030337 Escherichia coli strain AR_451 chromosome, complete genome 2 crisprs cas3,RT,DEDDh,DinG,csa3,c2c9_V-U4 0 1 18 0
CP030336 Escherichia coli strain AR_451 plasmid unnamed4 0 crisprs NA 0 0 1 0
CP030338 Escherichia coli strain AR_451 plasmid unnamed5, complete sequence 0 crisprs NA 0 0 0 0
CP030340 Escherichia coli strain AR_451 plasmid unnamed2 0 crisprs NA 0 0 0 0
CP030335 Escherichia coli strain AR_451 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0
CP030333 Escherichia coli strain AR_451 plasmid unnamed6, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP030336
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 6198 : 14291 11 Macacine_betaherpesvirus(14.29%) integrase attL 4226:4239|attR 10563:10576
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP030337
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP030337_1 455699-455840 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP030337_2 621906-621988 Orphan I-F
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12111-12158 8 0.833
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 424237-424284 8 0.833
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7391-7438 10 0.792
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84215-84262 10 0.792
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87125-87172 10 0.792
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229237-229284 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229338-229385 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229439-229486 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239731-239778 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239832-239879 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239933-239980 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 15006-15053 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230643-230690 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230744-230791 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230845-230892 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211613-211660 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211714-211761 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211815-211862 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31250-31297 11 0.771
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3371-3418 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4012-4059 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4113-4160 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208980-209027 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3370-3417 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4011-4058 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4112-4159 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219474-219521 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3370-3417 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4011-4058 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4112-4159 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210308-210355 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3370-3417 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4011-4058 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4112-4159 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191263-191310 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 270-317 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 101195-101242 12 0.75
CP030337_1 1.1|455746|48|CP030337|CRISPRCasFinder 455746-455793 48 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 158-205 13 0.729

1. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

2. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . . 

3. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

4. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

5. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

6. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

7. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

8. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..  

9. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

10. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

11. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..  

12. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

13. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

14. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

15. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..  

16. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

17. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..  

18. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..  

19. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

20. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..  

21. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

22. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

23. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ... 

24. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..  

25. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

26. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

27. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ... 

28. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..  

29. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

30. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

31. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ... 

32. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..  

33. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

34. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..  

35. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ... 

36. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

37. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

38. spacer 1.1|455746|48|CP030337|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 38221 : 85968 39 Staphylococcus_phage(22.22%) transposase,holin,integrase attL 53084:53098|attR 89053:89067
DBSCAN-SWA_2 619066 : 690201 81 Burkholderia_virus(34.62%) tRNA,plate,tail,protease,integrase,terminase,head attL 675799:675814|attR 695120:695135
DBSCAN-SWA_3 960735 : 975260 18 Shigella_phage(50.0%) transposase,integrase attL 969987:970000|attR 975640:975653
DBSCAN-SWA_4 1019133 : 1109486 98 Escherichia_phage(22.41%) tRNA,capsid,tail,protease,integrase,portal,transposase,terminase,head,lysis attL 1081225:1081240|attR 1112472:1112487
DBSCAN-SWA_5 1323689 : 1332516 10 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_6 1601433 : 1690456 102 Escherichia_phage(20.0%) tRNA,capsid,plate,tail,integrase,portal,transposase,terminase,head attL 1647130:1647189|attR 1690518:1690642
DBSCAN-SWA_7 1740008 : 1786694 59 Escherichia_phage(40.0%) tRNA,capsid,tail,protease,integrase,portal,terminase,head,lysis attL 1765778:1765792|attR 1787383:1787397
DBSCAN-SWA_8 1843800 : 1882224 40 Stx2-converting_phage(28.57%) transposase,integrase attL 1837518:1837534|attR 1882518:1882534
DBSCAN-SWA_9 1913550 : 1919935 6 Enterobacteria_phage(50.0%) transposase NA
DBSCAN-SWA_10 2014111 : 2023556 9 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_11 2141855 : 2152037 7 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_12 2538033 : 2544856 9 Enterobacteria_phage(100.0%) capsid NA
DBSCAN-SWA_13 2614016 : 2621120 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_14 2821244 : 2829086 10 Shigella_phage(33.33%) transposase,tRNA,integrase attL 2819762:2819777|attR 2833559:2833574
DBSCAN-SWA_15 2895955 : 2956498 61 Stx2-converting_phage(33.33%) tRNA,protease,integrase,transposase attL 2933070:2933101|attR 2952971:2953002
DBSCAN-SWA_16 4004572 : 4082204 94 Escherichia_phage(45.24%) tRNA,capsid,plate,tail,protease,integrase,portal,transposase,terminase,head,holin,lysis attL 4034421:4034467|attR 4066261:4066307
DBSCAN-SWA_17 4502957 : 4560673 62 Stx2-converting_phage(25.0%) tRNA,holin,integrase,transposase attL 4538783:4538797|attR 4553552:4553566
DBSCAN-SWA_18 4577535 : 4612191 38 Shigella_phage(63.64%) transposase,integrase attL 4595288:4595301|attR 4618793:4618806
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP030335
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 20508 : 64553 51 Burkholderia_phage(15.0%) integrase,transposase attL 13701:13714|attR 67595:67608
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage