CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,csa3,RT,DEDDh,DinG	0	5	20	0
CP030839	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 plasmid pLC0541_17, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030838_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030838_2

943633-944088

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

cas3

The CRISPR arrays of CP030838_2

>merge|CP030838|2|943633-944088|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTAATGTTTACCGCGCCCATGCGTTATGGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTCGATTCGGTCTATAAACCAGAATTTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAATATTTTACCCCGTATTGTGTACAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTATTCCTTTAAATGAACGGTAGAACGTTATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGTGTAGGTTTCGGGTGCGTGATCTTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGATCTACGGCGGGCGCTGGGTAAGGTGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGAGCAGATTCGAAAAATATCAGAAGAGTAGTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP030838|2|1|943633-944088|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAATGTTTACCGCGCCCATGCGTTATGGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTCGATTCGGTCTATAAACCAGAATTTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAATATTTTACCCCGTATTGTGTACAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATTCCTTTAAATGAACGGTAGAACGTTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTGTAGGTTTCGGGTGCGTGATCTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCTACGGCGGGCGCTGGGTAAGGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAGCAGATTCGAAAAATATCAGAAGAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP030838|2|2|943633-944088|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAATGTTTACCGCGCCCATGCGTTATGGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTCGATTCGGTCTATAAACCAGAATTTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAATATTTTACCCCGTATTGTGTACAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATTCCTTTAAATGAACGGTAGAACGTTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTGTAGGTTTCGGGTGCGTGATCTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCTACGGCGGGCGCTGGGTAAGGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAGCAGATTCGAAAAATATCAGAAGAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP030838|2|1|943633-944088|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAATGTTTACCGCGCCCATGCGTTATGGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTCGATTCGGTCTATAAACCAGAATTTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAATATTTTACCCCGTATTGTGTACAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATTCCTTTAAATGAACGGTAGAACGTTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTGTAGGTTTCGGGTGCGTGATCTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCTACGGCGGGCGCTGGGTAAGGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAGCAGATTCGAAAAATATCAGAAGAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030838.1\|AXB18593.1\|939510_941148_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
CP030838.1\|AXB18601.1\|950338_951082_-\|Secreted-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP030838.1\|AXB18605.1\|955206_956115_+\|Sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030838.1\|AXB18598.1\|945929_947729_+\|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP030838.1\|AXB18588.1\|934336_934780_-\|Signal-transduction-histidine-protein-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP030838.1\|AXB18592.1\|938491_939283_+\|Nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP030838.1\|AXB18595.1\|942664_943336_+\|7-carboxy-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|275126
CP030838.1\|AXB18589.1\|934837_936133_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP030838.1\|AXB18591.1\|938078_938417_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP030838.1\|AXB18600.1\|949516_950251_+\|Phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030838.1\|AXB18594.1\|941230_942529_+\|Enolase	unknown	unknown	gnl\|CDD\|234617
CP030838.1\|AXB18602.1\|951071_951290_-\|Secreted-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP030838.1\|AXB18603.1\|951669_953472_-\|CRISPR-associated-endonuclease/helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030838.1\|AXB18596.1\|944246_945044_+\|Ribonuclease-BN	unknown	unknown	gnl\|CDD\|224158
CP030838.1\|AXB18586.1\|930839_931982_+\|Glycerate-2-kinase	unknown	unknown	gnl\|CDD\|224840
CP030838.1\|AXB18590.1\|936184_938098_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP030838.1\|AXB18597.1\|945133_945496_-\|6-carboxy-5,6,7,8-tetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|238264
CP030838.1\|AXB18587.1\|932025_934398_-\|Signal-transduction-histidine-protein-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP030838.1\|AXB18604.1\|953909_954956_-\|Aminopeptidase-YwaD	unknown	unknown	gnl\|CDD\|182299
CP030838.1\|AXB18599.1\|947728_949441_+\|Sulfite-reductase-[NADPH]-hemoprotein-beta-component	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
CP030838.1\|AXB18593.1\|939510_941148_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030838.1\|AXB18601.1\|950338_951082_-\|Secreted-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030838.1\|AXB18605.1\|955206_956115_+\|Sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030838.1\|AXB18598.1\|945929_947729_+\|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030838.1\|AXB18588.1\|934336_934780_-\|Signal-transduction-histidine-protein-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.15618e-68
CP030838.1\|AXB18592.1\|938491_939283_+\|Nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.93674e-157
CP030838.1\|AXB18595.1\|942664_943336_+\|7-carboxy-7-deazaguanine-synthase	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	8.35348e-155
CP030838.1\|AXB18589.1\|934837_936133_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP030838.1\|AXB18591.1\|938078_938417_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	1.72603e-76
CP030838.1\|AXB18600.1\|949516_950251_+\|Phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	6.74132e-137
CP030838.1\|AXB18594.1\|941230_942529_+\|Enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030838.1\|AXB18602.1\|951071_951290_-\|Secreted-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	1.22737e-43
CP030838.1\|AXB18603.1\|951669_953472_-\|CRISPR-associated-endonuclease/helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	9.32877e-110
CP030838.1\|AXB18596.1\|944246_945044_+\|Ribonuclease-BN	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.05049e-102
CP030838.1\|AXB18586.1\|930839_931982_+\|Glycerate-2-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP030838.1\|AXB18590.1\|936184_938098_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP030838.1\|AXB18597.1\|945133_945496_-\|6-carboxy-5,6,7,8-tetrahydropterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030838.1\|AXB18587.1\|932025_934398_-\|Signal-transduction-histidine-protein-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP030838.1\|AXB18604.1\|953909_954956_-\|Aminopeptidase-YwaD	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030838.1\|AXB18599.1\|947728_949441_+\|Sulfite-reductase-[NADPH]-hemoprotein-beta-component	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>CP030838.1|AXB18595.1|942664_943336_+|7-carboxy-7-deazaguanine-synthase
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSEALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030838.1|AXB18594.1|941230_942529_+|Enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030838.1|AXB18593.1|939510_941148_+|CTP-synthase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030838.1|AXB18592.1|938491_939283_+|Nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLNIMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030838.1|AXB18591.1|938078_938417_+|GTP-pyrophosphokinase
MHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP030838.1|AXB18590.1|936184_938098_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGGDFRAPGRL
>CP030838.1|AXB18589.1|934837_936133_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVGIDLQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLVPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP030838.1|AXB18588.1|934336_934780_-|Signal-transduction-histidine-protein-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLTLTDAASRRSAVSTSSERRSPRRYYDSAHPDYLGELFAGRVSDC
>CP030838.1|AXB18587.1|932025_934398_-|Signal-transduction-histidine-protein-kinase-BarA
MILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP030838.1|AXB18586.1|930839_931982_+|Glycerate-2-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP030838.1|AXB18596.1|944246_945044_+|Ribonuclease-BN
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSVLFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030838.1|AXB18597.1|945133_945496_-|6-carboxy-5,6,7,8-tetrahydropterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030838.1|AXB18598.1|945929_947729_+|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKLPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSILAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDESVTVDGKALPLAEALEWHFELTVNTANIVENYATLTRSEPLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAAGVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030838.1|AXB18599.1|947728_949441_+|Sulfite-reductase-[NADPH]-hemoprotein-beta-component
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKSDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAHDFWE
>CP030838.1|AXB18600.1|949516_950251_+|Phosphoadenosine-phosphosulfate-reductase
MPQLDLNALNELPKVDRVLALTETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELMDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030838.1|AXB18601.1|950338_951082_-|Secreted-effector-protein-SopD
MEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP030838.1|AXB18602.1|951071_951290_-|Secreted-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGELRDGS
>CP030838.1|AXB18603.1|951669_953472_-|CRISPR-associated-endonuclease/helicase-Cas3
MTVYPRWRGEHAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>CP030838.1|AXB18604.1|953909_954956_-|Aminopeptidase-YwaD
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030838.1|AXB18605.1|955206_956115_+|Sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF

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Crispr_ID: CP030838_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030838_3

953440-953895

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

The CRISPR arrays of CP030838_3

>merge|CP030838|3|953440-953895|CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTCATGGCGTCATTCGGTGCTGATATGCAGATGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAGCGCCGGAGTTGATTAGTGGTGCCGGGGAGTGTTCCACGCGCCAGCGGGGATAAACCGTGAGTATGGTGAACCCTCATCTGTCACTGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCATCGCGTTCAGAGTGAAGATAAATCCATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTGGTAAGGCTATGCGCCGCGGTGATAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGAACCAACTCAGTCAGAAAACGCCCACAACGTGTTCCCCGCGCCAGTGGGGATAAACCGAAGATAACTCCTGTCTTTCCATCATTCGAAGCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030838|3|3|953440-953895|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGGCGTCATTCGGTGCTGATATGCAGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA
GTGTTCCACGCGCCAGCGGGGATAAACCG	TGAGTATGGTGAACCCTCATCTGTCACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCGCGTTCAGAGTGAAGATAAATCCATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGGTAAGGCTATGCGCCGCGGTGATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGAACCAACTCAGTCAGAAAACGCCCACAAC
GTGTTCCCCGCGCCAGTGGGGATAAACCG	AAGATAACTCCTGTCTTTCCATCATTCGAAGC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030838|3|2|953440-953895|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGGCGTCATTCGGTGCTGATATGCAGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA
GTGTTCCACGCGCCAGCGGGGATAAACCG	TGAGTATGGTGAACCCTCATCTGTCACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCGCGTTCAGAGTGAAGATAAATCCATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGGTAAGGCTATGCGCCGCGGTGATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGAACCAACTCAGTCAGAAAACGCCCACAAC
GTGTTCCCCGCGCCAGTGGGGATAAACCG	AAGATAACTCCTGTCTTTCCATCATTCGAAGC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030838.1\|AXB18610.1\|959050_959761_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030838.1\|AXB18593.1\|939510_941148_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
CP030838.1\|AXB18601.1\|950338_951082_-\|Secreted-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP030838.1\|AXB18605.1\|955206_956115_+\|Sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030838.1\|AXB18613.1\|961266_962028_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030838.1\|AXB18599.1\|947728_949441_+\|Sulfite-reductase-[NADPH]-hemoprotein-beta-component	unknown	unknown	gnl\|CDD\|237402
CP030838.1\|AXB18612.1\|960236_961286_+\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
CP030838.1\|AXB18595.1\|942664_943336_+\|7-carboxy-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|275126
CP030838.1\|AXB18596.1\|944246_945044_+\|Ribonuclease-BN	unknown	unknown	gnl\|CDD\|224158
CP030838.1\|AXB18607.1\|957550_958156_+\|Adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030838.1\|AXB18606.1\|956124_957564_+\|Sulfate-adenylyltransferase-subunit-1	unknown	unknown	gnl\|CDD\|235349
CP030838.1\|AXB18594.1\|941230_942529_+\|Enolase	unknown	unknown	gnl\|CDD\|234617
CP030838.1\|AXB18611.1\|959760_960240_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030838.1\|AXB18602.1\|951071_951290_-\|Secreted-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP030838.1\|AXB18600.1\|949516_950251_+\|Phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030838.1\|AXB18597.1\|945133_945496_-\|6-carboxy-5,6,7,8-tetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|238264
CP030838.1\|AXB18609.1\|958720_959032_+\|Cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030838.1\|AXB18598.1\|945929_947729_+\|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP030838.1\|AXB18604.1\|953909_954956_-\|Aminopeptidase-YwaD	unknown	unknown	gnl\|CDD\|182299
CP030838.1\|AXB18608.1\|958206_958530_+\|Inner-membrane-protein-YgbE	unknown	unknown	gnl\|CDD\|371891

Protein	Function_ID	Function_description	E-value
CP030838.1\|AXB18610.1\|959050_959761_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.27466e-119
CP030838.1\|AXB18593.1\|939510_941148_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030838.1\|AXB18601.1\|950338_951082_-\|Secreted-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030838.1\|AXB18605.1\|955206_956115_+\|Sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030838.1\|AXB18613.1\|961266_962028_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP030838.1\|AXB18599.1\|947728_949441_+\|Sulfite-reductase-[NADPH]-hemoprotein-beta-component	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030838.1\|AXB18612.1\|960236_961286_+\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030838.1\|AXB18595.1\|942664_943336_+\|7-carboxy-7-deazaguanine-synthase	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	8.35348e-155
CP030838.1\|AXB18596.1\|944246_945044_+\|Ribonuclease-BN	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.05049e-102
CP030838.1\|AXB18607.1\|957550_958156_+\|Adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
CP030838.1\|AXB18606.1\|956124_957564_+\|Sulfate-adenylyltransferase-subunit-1	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030838.1\|AXB18594.1\|941230_942529_+\|Enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030838.1\|AXB18611.1\|959760_960240_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP030838.1\|AXB18602.1\|951071_951290_-\|Secreted-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	1.22737e-43
CP030838.1\|AXB18600.1\|949516_950251_+\|Phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	6.74132e-137
CP030838.1\|AXB18597.1\|945133_945496_-\|6-carboxy-5,6,7,8-tetrahydropterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030838.1\|AXB18609.1\|958720_959032_+\|Cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP030838.1\|AXB18598.1\|945929_947729_+\|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030838.1\|AXB18604.1\|953909_954956_-\|Aminopeptidase-YwaD	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030838.1\|AXB18608.1\|958206_958530_+\|Inner-membrane-protein-YgbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48

>CP030838.1|AXB18602.1|951071_951290_-|Secreted-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGELRDGS
>CP030838.1|AXB18601.1|950338_951082_-|Secreted-effector-protein-SopD
MEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP030838.1|AXB18600.1|949516_950251_+|Phosphoadenosine-phosphosulfate-reductase
MPQLDLNALNELPKVDRVLALTETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELMDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030838.1|AXB18599.1|947728_949441_+|Sulfite-reductase-[NADPH]-hemoprotein-beta-component
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKSDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAHDFWE
>CP030838.1|AXB18598.1|945929_947729_+|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKLPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSILAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDESVTVDGKALPLAEALEWHFELTVNTANIVENYATLTRSEPLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAAGVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030838.1|AXB18597.1|945133_945496_-|6-carboxy-5,6,7,8-tetrahydropterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030838.1|AXB18596.1|944246_945044_+|Ribonuclease-BN
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSVLFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030838.1|AXB18595.1|942664_943336_+|7-carboxy-7-deazaguanine-synthase
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSEALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030838.1|AXB18594.1|941230_942529_+|Enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030838.1|AXB18593.1|939510_941148_+|CTP-synthase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030838.1|AXB18604.1|953909_954956_-|Aminopeptidase-YwaD
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030838.1|AXB18605.1|955206_956115_+|Sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030838.1|AXB18606.1|956124_957564_+|Sulfate-adenylyltransferase-subunit-1
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030838.1|AXB18607.1|957550_958156_+|Adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030838.1|AXB18608.1|958206_958530_+|Inner-membrane-protein-YgbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030838.1|AXB18609.1|958720_959032_+|Cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030838.1|AXB18610.1|959050_959761_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030838.1|AXB18611.1|959760_960240_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030838.1|AXB18612.1|960236_961286_+|tRNA-pseudouridine-synthase-D
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030838.1|AXB18613.1|961266_962028_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030838_2	2.6\|943967\|32\|CP030838\|PILER-CR,CRISPRCasFinder,CRT	943967-943998	32	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	64585-64616	7	0.781
CP030838_2	2.6\|943967\|32\|CP030838\|PILER-CR,CRISPRCasFinder,CRT	943967-943998	32	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	116237-116268	8	0.75
CP030838_2	2.7\|944028\|32\|CP030838\|PILER-CR,CRISPRCasFinder,CRT	944028-944059	32	MK415407	Phage FAKO27_000271F, complete genome	28863-28894	8	0.75
CP030838_2	2.5\|943906\|32\|CP030838\|PILER-CR,CRISPRCasFinder,CRT	943906-943937	32	NZ_CP021331	Maritalea myrionectae strain HL2708#5 plasmid pHL2708X3, complete sequence	63900-63931	9	0.719
CP030838_2	2.5\|943906\|32\|CP030838\|PILER-CR,CRISPRCasFinder,CRT	943906-943937	32	MK376347	Pseudomonas sp. strain ANT_H46 plasmid pA46H1, complete sequence	1820-1851	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	37177-37208	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	DQ289555	Bacillus anthracis phage W Beta, complete genome	39977-40008	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	NC_007814	Bacillus phage Fah, complete genome	37075-37106	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	KY963370	Bacillus phage Negev_SA, complete genome	39488-39519	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	37075-37106	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	DQ222853	Bacillus anthracis phage Gamma isolate 51, complete genome	36354-36385	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	35184-35215	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	DQ222851	Bacillus anthracis phage Cherry, complete genome	35716-35747	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	DQ289556	Bacillus anthracis phage Gamma isolate d'Herelle, complete genome	36483-36514	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	NC_007734	Bacillus phage WBeta, complete genome	39977-40008	9	0.719
CP030838_3	3.7\|953835\|32\|CP030838\|CRISPRCasFinder,CRT	953835-953866	32	NC_007458	Bacillus phage Gamma, complete genome	36354-36385	9	0.719
CP030838_2	2.6\|943967\|32\|CP030838\|PILER-CR,CRISPRCasFinder,CRT	943967-943998	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1125487-1125518	10	0.688
CP030838_3	3.5\|953713\|32\|CP030838\|CRISPRCasFinder,CRT	953713-953744	32	NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	5834-5865	11	0.656

1. spacer 2.6|943967|32|CP030838|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.781

gggatctacggcg----ggcgctgggtaaggtgctg	CRISPR spacer
----tcgccggcgggcaggcgctgggtcaggtgctg	Protospacer
    **  *****    ********** ********

2. spacer 2.6|943967|32|CP030838|PILER-CR,CRISPRCasFinder,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gggatctacggcgggcgctgggtaaggtgctg	CRISPR spacer
cggatgaacggcgggcgctgggtaatttttgg	Protospacer
 ****  ******************  * . *

3. spacer 2.7|944028|32|CP030838|PILER-CR,CRISPRCasFinder,CRT matches to MK415407 (Phage FAKO27_000271F, complete genome) position: , mismatch: 8, identity: 0.75

ggggagcagattcgaaaaatatcagaagagta	CRISPR spacer
agtgagcagatgccaaaaatatcagacaataa	Protospacer
.* ******** * ************ .*  *

4. spacer 2.5|943906|32|CP030838|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021331 (Maritalea myrionectae strain HL2708#5 plasmid pHL2708X3, complete sequence) position: , mismatch: 9, identity: 0.719

ccggtgtaggtttcgggtgcgtgatctttgat	CRISPR spacer
attccgtaggtttcggtcgcgtgatctttggc	Protospacer
 .  .*********** .************..

5. spacer 2.5|943906|32|CP030838|PILER-CR,CRISPRCasFinder,CRT matches to MK376347 (Pseudomonas sp. strain ANT_H46 plasmid pA46H1, complete sequence) position: , mismatch: 9, identity: 0.719

ccggtgtaggtttcgggtgcgtgatctttgat	CRISPR spacer
gcacaataggtttagtgtgcgtgatctttaac	Protospacer
 *.  .******* * *************.*.

6. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

7. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to DQ289555 (Bacillus anthracis phage W Beta, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

8. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

9. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to KY963370 (Bacillus phage Negev_SA, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

10. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

11. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to DQ222853 (Bacillus anthracis phage Gamma isolate 51, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

12. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

13. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to DQ222851 (Bacillus anthracis phage Cherry, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

14. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to DQ289556 (Bacillus anthracis phage Gamma isolate d'Herelle, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

15. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to NC_007734 (Bacillus phage WBeta, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

16. spacer 3.7|953835|32|CP030838|CRISPRCasFinder,CRT matches to NC_007458 (Bacillus phage Gamma, complete genome) position: , mismatch: 9, identity: 0.719

aagataactcctgtctttccatcattcgaagc	CRISPR spacer
atgttaactcctgtccttccatccttcatcct	Protospacer
* * ***********.******* ***.   .

17. spacer 2.6|943967|32|CP030838|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

gggatctacggcgggcgctgggtaaggtgctg	CRISPR spacer
cgttagcggggcgggcgctggatacggtgctg	Protospacer
 *    .. ************.** *******

18. spacer 3.5|953713|32|CP030838|CRISPRCasFinder,CRT matches to NC_015579 (Novosphingobium sp. PP1Y plasmid Lpl, complete sequence) position: , mismatch: 11, identity: 0.656

aaattggtaaggctatgcgccgcggtgatagc	CRISPR spacer
tcgcaaaagaggctatgtgcggcggtgatagc	Protospacer
  .. .. .********.** ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1116068 : 1124458

Enterobacteria_phage(62.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB18769.1\|1116068_1116569_-	hypothetical protein	A0A2H4J2P5	uncultured_Caudovirales_phage	8.9e-40	61.3
AXB18770.1\|1117006_1119349_-	DNA primase TraC	Q7M2A8	Enterobacteria_phage	0.0e+00	84.5
AXB18771.1\|1119363_1119684_-	hypothetical protein	NA	NA	NA	NA
AXB18772.1\|1119680_1119908_-	hypothetical protein	NA	NA	NA	NA
AXB18773.1\|1119904_1120099_-	hypothetical protein	Q7M2A7	Enterobacteria_phage	2.5e-22	87.1
AXB18774.1\|1120449_1120716_-	hypothetical protein	Q7M299	Enterobacteria_phage	2.6e-30	71.6
AXB18775.1\|1121256_1122000_+	hypothetical protein	NA	NA	NA	NA
AXB18776.1\|1122003_1122243_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
AXB18777.1\|1122258_1122825_+	hypothetical protein	Q7M2A1	Enterobacteria_phage	8.7e-60	65.4
AXB18778.1\|1122788_1122974_-	hypothetical protein	NA	NA	NA	NA
AXB18779.1\|1123097_1123250_+	hypothetical protein	NA	NA	NA	NA
AXB18780.1\|1123310_1123589_+	hypothetical protein	U5P4I9	Shigella_phage	9.0e-34	93.8
AXB18781.1\|1123645_1124458_+	hypothetical protein	U5P429	Shigella_phage	8.5e-149	93.7

DBSCAN-SWA_2

1148508 : 1185968

Salmonella_phage(86.05%)

integrase,tail

attL 1140997:1141013|attR 1157503:1157519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1140997:1141013	attL	NA	NA	NA	NA
AXB18808.1\|1148508_1149390_-	hypothetical protein	A0A097BYB4	Enterococcus_phage	4.3e-29	41.0
AXB18809.1\|1149470_1151054_-	hypothetical protein	NA	NA	NA	NA
AXB18810.1\|1151257_1151383_-	hypothetical protein	NA	NA	NA	NA
AXB18811.1\|1151539_1152766_-\|integrase	Prophage integrase IntA	A0A1B5FPC6	Escherichia_phage	2.0e-189	81.0
AXB18812.1\|1152952_1153207_+	hypothetical protein	NA	NA	NA	NA
AXB18813.1\|1153096_1154122_-	Tyrosine recombinase XerH	A0A1S6L016	Salmonella_phage	1.4e-193	95.3
AXB18814.1\|1154123_1154756_-	hypothetical protein	A0A1S6KZZ7	Salmonella_phage	6.9e-106	90.5
AXB18815.1\|1154875_1155124_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	3.4e-24	71.6
AXB18816.1\|1155156_1155666_+	hypothetical protein	A0A1S6L008	Salmonella_phage	1.7e-86	95.9
AXB18817.1\|1155673_1155874_+	hypothetical protein	A0A1S6L005	Salmonella_phage	1.3e-29	92.3
AXB18818.1\|1155837_1156188_+	hypothetical protein	E5G6L5	Salmonella_phage	3.3e-33	64.3
AXB18819.1\|1156242_1156671_+	hypothetical protein	Q71TK7	Escherichia_phage	1.1e-57	86.7
AXB18820.1\|1156670_1156820_+	hypothetical protein	A0A0A0YRI9	Escherichia_phage	2.2e-07	61.7
AXB18821.1\|1156922_1157156_+	hypothetical protein	A0A1S6L021	Salmonella_phage	2.7e-31	94.8
AXB18822.1\|1157155_1157383_+	putative protein YbiI	A0A1S6L007	Salmonella_phage	8.1e-33	88.0
AXB18823.1\|1157379_1157964_+	Exodeoxyribonuclease 10	A0A1S6L012	Salmonella_phage	2.4e-84	76.7
1157503:1157519	attR	NA	NA	NA	NA
AXB18824.1\|1157960_1158257_+	hypothetical protein	C9E2N9	Enterococcus_phage	8.7e-11	46.8
AXB18825.1\|1158253_1159111_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.4e-133	82.8
AXB18826.1\|1159101_1161510_+	hypothetical protein	A0A1S6L028	Salmonella_phage	0.0e+00	95.4
AXB18827.1\|1161491_1161857_+	hypothetical protein	A0A1S6L006	Salmonella_phage	9.1e-26	98.4
AXB18828.1\|1161868_1162102_+	DNA damage-inducible protein I	A0A1S6L014	Salmonella_phage	3.7e-33	92.2
AXB18829.1\|1162238_1163132_+	hypothetical protein	NA	NA	NA	NA
AXB18830.1\|1163134_1163398_+	hypothetical protein	NA	NA	NA	NA
AXB18831.1\|1163390_1163807_+	hypothetical protein	NA	NA	NA	NA
AXB18832.1\|1164120_1165176_-	hypothetical protein	A0A1S6KZW5	Salmonella_phage	1.8e-175	88.5
AXB18833.1\|1165172_1165898_-	hypothetical protein	Q9ZXM5	Pseudomonas_virus	3.9e-20	39.6
AXB18834.1\|1165897_1167616_-	hypothetical protein	E5G6M4	Salmonella_phage	0.0e+00	98.3
AXB18835.1\|1167806_1168640_+	hypothetical protein	E5G6M5	Salmonella_phage	6.9e-130	99.6
AXB18836.1\|1168656_1169721_+	hypothetical protein	A0A1S6KZZ3	Salmonella_phage	1.9e-196	99.7
AXB18837.1\|1169724_1170375_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	2.2e-115	100.0
AXB18838.1\|1170468_1170933_+	hypothetical protein	A0A1S6KZW8	Salmonella_phage	4.2e-84	98.1
AXB18839.1\|1170932_1171136_+	hypothetical protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AXB18840.1\|1171139_1171355_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AXB18841.1\|1171335_1171845_+	Lysozyme RrrD	A0A1S6KZY9	Salmonella_phage	6.4e-94	98.8
AXB18842.1\|1171849_1172224_+	hypothetical protein	NA	NA	NA	NA
AXB18843.1\|1172220_1172649_+	hypothetical protein	A0A1S6KZX8	Salmonella_phage	7.5e-64	94.3
AXB18844.1\|1172744_1173176_+	hypothetical protein	E5G6N3	Salmonella_phage	1.7e-76	100.0
AXB18845.1\|1173168_1173615_+	hypothetical protein	E5G6N4	Salmonella_phage	8.7e-71	98.6
AXB18846.1\|1173616_1174468_-	hypothetical protein	E5G6N5	Salmonella_phage	1.1e-162	99.6
AXB18847.1\|1174545_1175124_+	hypothetical protein	E5G6N6	Salmonella_phage	1.4e-108	100.0
AXB18848.1\|1175120_1175486_+	hypothetical protein	A0A1S6KZZ4	Salmonella_phage	2.9e-56	95.0
AXB18849.1\|1175472_1176381_+	hypothetical protein	E5G6N8	Salmonella_phage	5.9e-159	99.7
AXB18850.1\|1176373_1176979_+	hypothetical protein	E5G6N9	Salmonella_phage	5.4e-116	98.5
AXB18851.1\|1176975_1178742_+	hypothetical protein	A0A1S6KZZ8	Salmonella_phage	1.2e-136	52.0
AXB18852.1\|1178744_1179272_+	hypothetical protein	NA	NA	NA	NA
AXB18853.1\|1179400_1180573_+\|tail	Putative prophage major tail sheath protein	A0A1S6KZY7	Salmonella_phage	6.8e-216	96.4
AXB18854.1\|1180582_1181098_+	hypothetical protein	E5G6P8	Salmonella_phage	2.3e-91	98.8
AXB18855.1\|1181152_1181455_+	hypothetical protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
AXB18856.1\|1181581_1184389_+	Chromosome partition protein Smc	E5G6Q1	Salmonella_phage	0.0e+00	99.1
AXB18857.1\|1184385_1184871_+	hypothetical protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
AXB18858.1\|1184867_1185968_+	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	2.8e-195	99.2

DBSCAN-SWA_3

1255971 : 1262991

Salmonella_phage(33.33%)

integrase

attL 1250327:1250340|attR 1258217:1258230

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1250327:1250340	attL	NA	NA	NA	NA
AXB18912.1\|1255971_1257201_+\|integrase	Prophage integrase IntA	H6WRW7	Salmonella_phage	6.0e-231	93.4
AXB18913.1\|1257320_1257578_+	hypothetical protein	U5P4I9	Shigella_phage	5.4e-33	92.4
AXB18914.1\|1257656_1258244_-	hypothetical protein	Q6H9S3	Enterobacteria_phage	1.5e-17	40.3
1258217:1258230	attR	NA	NA	NA	NA
AXB18915.1\|1258414_1258816_-	hypothetical protein	NA	NA	NA	NA
AXB18916.1\|1259557_1259788_+	hypothetical protein	U5P429	Shigella_phage	1.8e-35	96.1
AXB18917.1\|1260280_1260457_+	hypothetical protein	NA	NA	NA	NA
AXB18918.1\|1260447_1260747_+	DNA-invertase hin	S4TTF2	Salmonella_phage	1.0e-27	92.6
AXB18919.1\|1261191_1262991_+	Elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9

DBSCAN-SWA_4

1479441 : 1488361

Salmonella_phage(33.33%)

integrase

attL 1479337:1479351|attR 1487270:1487284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1479337:1479351	attL	NA	NA	NA	NA
AXB19106.1\|1479441_1479645_-	Response regulator inhibitor for tor operon	C6ZR24	Salmonella_phage	2.7e-32	97.0
AXB19107.1\|1479613_1479739_-	hypothetical protein	NA	NA	NA	NA
AXB19108.1\|1479741_1480377_-	hypothetical protein	A0A075B8I7	Enterobacteria_phage	5.7e-108	89.1
AXB19109.1\|1480413_1480917_-	hypothetical protein	A0A1R3Y5P7	Salmonella_virus	6.4e-14	33.3
AXB19110.1\|1480943_1481222_+	hypothetical protein	U5P4I9	Shigella_phage	9.0e-34	93.8
AXB19111.1\|1481476_1482091_+	hypothetical protein	U5P429	Shigella_phage	1.3e-106	93.6
AXB19112.1\|1482053_1483070_+	hypothetical protein	T1SBJ2	Salmonella_phage	6.6e-175	94.7
AXB19113.1\|1483105_1485028_-	O-acetyltransferase OatA	A0A1R3Y5Q6	Salmonella_virus	0.0e+00	97.3
AXB19114.1\|1485936_1487106_-\|integrase	Prophage integrase IntS	C6ZR22	Salmonella_phage	1.7e-214	92.8
AXB19115.1\|1487419_1488361_-	Inner membrane protein YfdC	E7DYY8	Enterobacteria_phage	1.4e-147	88.2
1487270:1487284	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1720284 : 1729453

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB19331.1\|1720284_1721232_+	Glycine betaine uptake system ATP-binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AXB19332.1\|1721215_1721947_+	Glycine betaine uptake system permease protein YehW	NA	NA	NA	NA
AXB19333.1\|1721927_1722035_-	hypothetical protein	NA	NA	NA	NA
AXB19334.1\|1722094_1722826_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXB19335.1\|1723048_1724734_+	Sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AXB19336.1\|1724730_1725450_+	Transcriptional regulatory protein BtsR	NA	NA	NA	NA
AXB19337.1\|1725496_1725964_+	hypothetical protein	Q9EYF4	Enterobacteria_phage	6.7e-74	89.7
AXB19338.1\|1726132_1726549_-	putative lipoprotein YehR	NA	NA	NA	NA
AXB19339.1\|1726720_1727179_-	putative lipoprotein YehR	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXB19340.1\|1727419_1729453_-\|tRNA	Methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.3e-54	27.4

DBSCAN-SWA_6

1945735 : 1962726

Enterobacteria_phage(26.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB19557.1\|1945735_1946986_+	Isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	5.1e-20	92.6
AXB19558.1\|1947099_1948242_-	hypothetical protein	O21929	Phage_21	6.9e-173	80.0
AXB19559.1\|1948231_1948468_-	hypothetical protein	NA	NA	NA	NA
AXB19560.1\|1948517_1948949_-	hypothetical protein	Q5G8V2	Enterobacteria_phage	3.0e-12	85.0
AXB19561.1\|1949086_1950655_+	hypothetical protein	K7PKJ2	Enterobacteria_phage	1.4e-155	76.9
AXB19562.1\|1950693_1950936_+	hypothetical protein	NA	NA	NA	NA
AXB19563.1\|1950989_1953560_+	hypothetical protein	Q6K1H2	Salmonella_virus	4.2e-133	64.5
AXB19564.1\|1953562_1954096_+	hypothetical protein	A0A1S6KZZ1	Salmonella_phage	2.5e-80	83.1
AXB19565.1\|1954617_1954998_-	hypothetical protein	A0A1B0VCD0	Salmonella_phage	1.7e-19	66.2
AXB19566.1\|1955092_1957099_+	E3 ubiquitin-protein ligase SspH2	Q9MBL9	Phage_Gifsy-2	7.4e-61	78.9
AXB19567.1\|1957409_1958081_-	Putative SOS response-associated peptidase YedK	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	61.3
AXB19568.1\|1958228_1958507_+	hypothetical protein	U5P4I9	Shigella_phage	9.0e-34	93.8
AXB19569.1\|1958570_1959374_+	hypothetical protein	U5P429	Shigella_phage	7.1e-140	93.4
AXB19570.1\|1959666_1960209_+	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AXB19571.1\|1960356_1960734_-	hypothetical protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AXB19572.1\|1960806_1961430_-	Cytolethal distending toxin subunit B	A5LH53	Enterobacteria_phage	1.9e-44	47.6
AXB19573.1\|1961485_1961614_-	Cytolethal distending toxin subunit B	NA	NA	NA	NA
AXB19574.1\|1962486_1962726_-	DNA damage-inducible protein I	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_7

2193487 : 2199346

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB19819.1\|2193487_2194102_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	4.3e-28	36.8
AXB19820.1\|2194143_2195001_-	Anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA
AXB19821.1\|2195002_2195620_-	Anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	2.5e-76	60.1
AXB19822.1\|2195630_2196869_-	Dimethyl sulfoxide reductase DmsA	A0A077SK27	Escherichia_phage	2.8e-103	46.4
AXB19823.1\|2196923_2198060_-	Dimethyl sulfoxide reductase DmsA	A0A077SK27	Escherichia_phage	1.9e-90	48.9
AXB19824.1\|2198198_2199011_-	hypothetical protein	U5P429	Shigella_phage	8.5e-149	93.7
AXB19825.1\|2199067_2199346_-	hypothetical protein	U5P4I9	Shigella_phage	2.6e-33	92.5

DBSCAN-SWA_8

2408382 : 2418311

Escherichia_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20034.1\|2408382_2410821_+	Putative dimethyl sulfoxide reductase chain YnfE	A0A077SK27	Escherichia_phage	1.4e-218	49.4
AXB20035.1\|2410919_2413355_+	putative dimethyl sulfoxide reductase chain YnfF	A0A077SK27	Escherichia_phage	6.0e-206	48.3
AXB20036.1\|2413365_2413983_+	Anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	1.6e-75	59.6
AXB20037.1\|2413984_2414839_+	Anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA
AXB20038.1\|2414881_2415496_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.5e-28	38.1
AXB20039.1\|2415603_2415834_+	HTH-type transcriptional regulator DsdC	NA	NA	NA	NA
AXB20040.1\|2415856_2416114_+	hypothetical protein	U5P4I9	Shigella_phage	5.4e-33	92.4
AXB20041.1\|2416032_2416779_-	hypothetical protein	Q6H9S3	Enterobacteria_phage	1.7e-18	34.5
AXB20042.1\|2417018_2417342_-	hypothetical protein	NA	NA	NA	NA
AXB20043.1\|2417369_2418311_+	hypothetical protein	U5P429	Shigella_phage	9.2e-147	93.0

DBSCAN-SWA_9

2585023 : 2591356

Shigella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20207.1\|2585023_2585419_+	putative protein YdfO	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
AXB20208.1\|2585747_2586224_+	hypothetical protein	NA	NA	NA	NA
AXB20209.1\|2586611_2587031_-	Acetyltransferase	NA	NA	NA	NA
AXB20210.1\|2587364_2587664_+	hypothetical protein	U5P4I9	Shigella_phage	4.8e-41	90.9
AXB20211.1\|2587701_2588514_+	hypothetical protein	U5P429	Shigella_phage	8.5e-149	93.7
AXB20212.1\|2588751_2589882_+	Phytochrome-like protein cph2	NA	NA	NA	NA
AXB20213.1\|2590167_2590563_-	hypothetical protein	A0A088CBK9	Shigella_phage	2.9e-17	38.1
AXB20214.1\|2590881_2591082_+	Protein RecT	A0A1P8DTF2	Proteus_phage	3.5e-16	73.2
AXB20215.1\|2591026_2591356_+	hypothetical protein	A0A2H4IYC8	uncultured_Caudovirales_phage	4.2e-22	48.2

DBSCAN-SWA_10

2596147 : 2608361

Edwardsiella_phage(46.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20218.1\|2596147_2596717_-\|tail	Prophage tail fiber assembly protein TfaE	A0A0M4RTP2	Salmonella_phage	2.9e-95	89.9
AXB20219.1\|2596706_2597501_-	O-acetyl-ADP-ribose deacetylase	A0A0M4QWS3	Salmonella_phage	1.2e-134	87.9
AXB20220.1\|2597497_2598949_-	hypothetical protein	E5G6P0	Salmonella_phage	2.3e-48	74.3
AXB20221.1\|2598938_2599541_-	hypothetical protein	A0A2R3UAM9	Myoviridae_environmental_samples	4.3e-33	38.9
AXB20222.1\|2599542_2600784_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	6.5e-100	49.4
AXB20223.1\|2600780_2601137_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	2.1e-19	49.1
AXB20224.1\|2601149_2601827_-	hypothetical protein	A0A077KAY0	Edwardsiella_phage	5.4e-32	36.4
AXB20225.1\|2601807_2602677_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	2.0e-31	32.4
AXB20226.1\|2602673_2602976_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
AXB20227.1\|2602975_2603686_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	4.7e-26	34.3
AXB20228.1\|2603682_2604726_-	Membrane-bound lytic murein transglycosylase D	A0A0M4REK7	Salmonella_phage	6.8e-50	67.1
AXB20229.1\|2604747_2605851_-	hypothetical protein	NA	NA	NA	NA
AXB20230.1\|2606058_2606463_-	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
AXB20231.1\|2606462_2606909_-	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
AXB20232.1\|2606909_2607461_-	hypothetical protein	A0A077KGV4	Edwardsiella_phage	1.1e-43	47.2
AXB20233.1\|2607821_2608361_-	Lysozyme RrrD	S5MQK2	Escherichia_phage	5.2e-78	74.7

DBSCAN-SWA_11

2612655 : 2618845

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20236.1\|2612655_2613018_-	hypothetical protein	Q777W5	Enterobacteria_phage	1.3e-53	80.8
AXB20237.1\|2613017_2613335_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	4.9e-36	79.3
AXB20238.1\|2613316_2613511_-	hypothetical protein	S4TNP0	Salmonella_phage	1.0e-12	59.6
AXB20239.1\|2613507_2613945_-	hypothetical protein	G8C7V3	Escherichia_phage	8.0e-53	69.4
AXB20240.1\|2614115_2614283_-	hypothetical protein	NA	NA	NA	NA
AXB20241.1\|2614705_2615518_-	hypothetical protein	U5P429	Shigella_phage	3.6e-147	93.3
AXB20242.1\|2615574_2615853_-	hypothetical protein	U5P4I9	Shigella_phage	9.0e-34	93.8
AXB20243.1\|2616048_2616474_+	hypothetical protein	A0A2H4IYC8	uncultured_Caudovirales_phage	1.2e-29	48.9
AXB20244.1\|2616856_2617210_-	hypothetical protein	NA	NA	NA	NA
AXB20245.1\|2617226_2618102_-	Inner membrane protein YebZ	NA	NA	NA	NA
AXB20246.1\|2618102_2618477_-	Protein YobA	NA	NA	NA	NA
AXB20247.1\|2618614_2618845_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_12

2647669 : 2661030

Salmonella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20279.1\|2647669_2647960_+	Putative SOS response-associated peptidase YedK	A0A2H4J5W2	uncultured_Caudovirales_phage	1.3e-22	50.0
AXB20280.1\|2648279_2650382_-	E3 ubiquitin-protein ligase SspH1	Q9MBL9	Phage_Gifsy-2	6.2e-26	46.9
AXB20281.1\|2650552_2651593_-	hypothetical protein	A0A077SLK2	Escherichia_phage	3.1e-180	86.4
AXB20282.1\|2652918_2653329_-	hypothetical protein	A0A1B0V844	Salmonella_phage	2.0e-61	86.6
AXB20283.1\|2653427_2654429_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.1e-56	97.3
AXB20284.1\|2654415_2654868_-	hypothetical protein	A0A192Y5V3	Salmonella_phage	3.7e-85	99.3
AXB20285.1\|2655320_2655725_+	hypothetical protein	NA	NA	NA	NA
AXB20286.1\|2655840_2656644_-	hypothetical protein	F1C595	Cronobacter_phage	5.7e-105	71.9
AXB20287.1\|2656787_2657066_+	hypothetical protein	U5P4I9	Shigella_phage	9.0e-34	93.8
AXB20288.1\|2657320_2657935_+	hypothetical protein	U5P429	Shigella_phage	1.3e-106	93.6
AXB20289.1\|2658605_2659046_+	Putative defective protein IntQ	Q8W658	Enterobacteria_phage	7.7e-64	81.4
AXB20290.1\|2659282_2659798_+	hypothetical protein	Q859D1	Escherichia_coli_phage	2.8e-20	77.6
AXB20291.1\|2659850_2660246_+	Inner membrane protein YecN	NA	NA	NA	NA
AXB20292.1\|2660286_2661030_+	Carboxy-S-adenosyl-L-methionine synthase	F5B419	Synechococcus_phage	5.4e-25	30.4

DBSCAN-SWA_13

2733995 : 2748951

Salmonella_phage(46.15%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20373.1\|2733995_2735426_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
AXB20374.1\|2735499_2736195_-	putative protein YedJ	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AXB20375.1\|2736273_2736585_-	Inner membrane protein YedR	NA	NA	NA	NA
AXB20376.1\|2737234_2738434_+	Outer membrane protein N	Q1MVN1	Enterobacteria_phage	1.1e-109	56.7
AXB20377.1\|2738798_2739011_-	Cold shock-like protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXB20378.1\|2739466_2740735_-	Protein UmuC	I6RSM4	Salmonella_phage	1.9e-224	91.2
AXB20379.1\|2740737_2741157_-	Protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXB20380.1\|2741726_2742476_+	hypothetical protein	NA	NA	NA	NA
AXB20381.1\|2743822_2744830_+	hypothetical protein	Q8HAB2	Salmonella_phage	7.9e-197	100.0
AXB20382.1\|2744830_2744980_-	hypothetical protein	S4TRX2	Salmonella_phage	4.7e-05	61.0
AXB20383.1\|2745114_2745684_-	hypothetical protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
AXB20384.1\|2745683_2746565_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.8e-166	100.0
AXB20385.1\|2746611_2746749_-	hypothetical protein	A0A0M4S639	Salmonella_phage	2.9e-09	64.4
AXB20386.1\|2746918_2747458_-	Lysozyme RrrD	S5MQK2	Escherichia_phage	5.2e-78	74.7
AXB20387.1\|2747435_2747744_-	hypothetical protein	NA	NA	NA	NA
AXB20388.1\|2747933_2748176_+	hypothetical protein	NA	NA	NA	NA
AXB20389.1\|2748217_2748589_-	hypothetical protein	NA	NA	NA	NA
AXB20390.1\|2748585_2748951_-	hypothetical protein	A0A1I9KFD3	Aeromonas_phage	5.1e-21	59.5

DBSCAN-SWA_14

2755724 : 2765413

Salmonella_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20397.1\|2755724_2755880_+	hypothetical protein	M4QQ57	Salicola_phage	8.0e-08	55.3
AXB20398.1\|2755985_2756216_+	hypothetical protein	NA	NA	NA	NA
AXB20399.1\|2756181_2756379_-	hypothetical protein	NA	NA	NA	NA
AXB20400.1\|2756919_2757126_+	Killing protein KilR	I6PBM9	Cronobacter_phage	3.0e-10	45.6
AXB20401.1\|2757201_2757534_+	hypothetical protein	NA	NA	NA	NA
AXB20402.1\|2757674_2760641_+	Exodeoxyribonuclease 8	A0A0U2I1R6	Escherichia_phage	1.2e-195	40.8
AXB20403.1\|2760637_2761858_+	hypothetical protein	A0A2H4JAZ0	uncultured_Caudovirales_phage	5.6e-80	58.5
AXB20404.1\|2762204_2762702_+	hypothetical protein	Q8HAA6	Salmonella_phage	4.8e-78	75.7
AXB20405.1\|2762698_2763409_+	hypothetical protein	C6ZR26	Salmonella_phage	6.7e-33	97.1
AXB20406.1\|2763396_2763576_+	Double-strand break reduction protein	A0A0U2QL97	Escherichia_phage	4.3e-13	62.1
AXB20407.1\|2763674_2764091_+	hypothetical protein	NA	NA	NA	NA
AXB20408.1\|2764170_2764407_+	hypothetical protein	NA	NA	NA	NA
AXB20409.1\|2764390_2765413_+	hypothetical protein	A0A192Y7M7	Salmonella_phage	3.3e-89	50.6

DBSCAN-SWA_15

2849680 : 2860187

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20497.1\|2849680_2850994_-	GDP-4-keto-6-deoxy-D-mannose 3-dehydratase	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AXB20498.1\|2851020_2852100_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.0e-16	24.1
AXB20499.1\|2852104_2852878_-	Glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXB20500.1\|2852893_2853868_-	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase	NA	NA	NA	NA
AXB20501.1\|2853873_2854422_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
AXB20502.1\|2854425_2855304_-	Glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.0e-108	65.2
AXB20503.1\|2855351_2856251_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.7e-31	36.3
AXB20504.1\|2856250_2857336_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXB20505.1\|2857712_2858606_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXB20506.1\|2858789_2860187_-	hypothetical protein	A0A291LBB9	Klebsiella_phage	8.9e-21	26.3

DBSCAN-SWA_16

2946390 : 2957434

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20579.1\|2946390_2947008_-	Anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	4.3e-76	59.6
AXB20580.1\|2947018_2948725_-	Dimethyl sulfoxide reductase DmsA	A0A077SK27	Escherichia_phage	6.7e-164	51.0
AXB20581.1\|2948721_2949462_-	Dimethyl sulfoxide reductase DmsA	A0A077SK27	Escherichia_phage	1.4e-49	49.0
AXB20582.1\|2949699_2950992_-\|tRNA	Serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
AXB20583.1\|2951250_2952594_-	Replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.6e-80	40.9
AXB20584.1\|2952603_2953215_-	Outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
AXB20585.1\|2953357_2957434_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5

DBSCAN-SWA_17

2970004 : 2978693

Thermus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20599.1\|2970004_2970880_+	hypothetical protein	S6BFN8	Thermus_phage	4.3e-05	35.2
AXB20600.1\|2971016_2972030_+	hypothetical protein	NA	NA	NA	NA
AXB20601.1\|2972329_2974606_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AXB20602.1\|2974636_2974957_-\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AXB20603.1\|2975280_2975502_+	Cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AXB20604.1\|2975631_2977578_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	1.6e-39	42.0
AXB20605.1\|2977574_2978693_-	Macrolide export protein MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_18

3184881 : 3211212

Enterobacteria_phage(75.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20813.1\|3184881_3186597_-	E3 ubiquitin-protein ligase SspH2	Q9MBM1	Phage_Gifsy-1	8.3e-138	54.9
AXB20814.1\|3186955_3187132_+	hypothetical protein	A0A0M4S5U3	Salmonella_phage	2.5e-05	62.8
AXB20815.1\|3187212_3187644_-	hypothetical protein	NA	NA	NA	NA
AXB20816.1\|3187643_3188693_-	hypothetical protein	A0A0A7NPT9	Enterobacteria_phage	2.5e-153	73.4
AXB20817.1\|3188692_3190426_-	hypothetical protein	A0A0A7NV54	Enterobacteria_phage	1.9e-262	74.8
AXB20818.1\|3190582_3191419_+	hypothetical protein	A0A0A7NRY7	Enterobacteria_phage	3.4e-100	65.8
AXB20819.1\|3191442_3192528_+	hypothetical protein	A0A0A7NQ82	Enterobacteria_phage	2.2e-136	68.4
AXB20820.1\|3192574_3193405_+	hypothetical protein	A0A0A7NPX9	Enterobacteria_phage	4.5e-89	64.7
AXB20821.1\|3193506_3194001_+	hypothetical protein	A0A0A7NPU2	Enterobacteria_phage	1.4e-50	58.9
AXB20822.1\|3194000_3194201_+	hypothetical protein	A0A0A7NV57	Enterobacteria_phage	1.9e-22	80.3
AXB20823.1\|3194191_3194569_+	hypothetical protein	NA	NA	NA	NA
AXB20824.1\|3194565_3195009_+	Lysozyme RrrD	A0A075B8L0	Enterobacteria_phage	2.4e-44	64.6
AXB20825.1\|3195015_3195507_+	hypothetical protein	S4TNN7	Salmonella_phage	1.3e-32	56.2
AXB20826.1\|3195493_3195742_+	hypothetical protein	A0A0A7NPU6	Enterobacteria_phage	6.6e-20	52.4
AXB20827.1\|3195742_3196426_-	hypothetical protein	Q6H9S3	Enterobacteria_phage	2.6e-18	34.5
AXB20828.1\|3196428_3196995_-	hypothetical protein	NA	NA	NA	NA
AXB20829.1\|3197278_3197914_+	hypothetical protein	A0A0A7NV60	Enterobacteria_phage	1.0e-64	59.8
AXB20830.1\|3197910_3198501_+	hypothetical protein	A0A0A7NRZ3	Enterobacteria_phage	3.1e-68	68.1
AXB20831.1\|3198497_3198866_+	hypothetical protein	A0A0A7NQ90	Enterobacteria_phage	6.5e-40	71.3
AXB20832.1\|3198852_3199749_+	hypothetical protein	A0A0A7NPY5	Enterobacteria_phage	1.5e-106	69.1
AXB20833.1\|3199741_3200269_+	hypothetical protein	A0A0A7NPV1	Enterobacteria_phage	7.1e-56	61.2
AXB20834.1\|3200274_3202026_+	hypothetical protein	A0A0M3ULF6	Salmonella_phage	9.3e-177	61.3
AXB20835.1\|3202022_3202847_+	O-acetyl-ADP-ribose deacetylase	A0A0M4QWS3	Salmonella_phage	8.9e-146	91.6
AXB20836.1\|3202836_3203406_+\|tail	Prophage tail fiber assembly protein TfaE	A0A0M4RTP2	Salmonella_phage	1.6e-98	92.0
AXB20837.1\|3203533_3204022_-	hypothetical protein	A0A0A7NV65	Enterobacteria_phage	2.5e-71	79.5
AXB20838.1\|3204035_3207032_-	hypothetical protein	A0A0A7NRZ9	Enterobacteria_phage	2.7e-256	51.6
AXB20839.1\|3207146_3207503_-	hypothetical protein	A0A0A7NPZ0	Enterobacteria_phage	4.4e-17	52.6
AXB20840.1\|3207545_3208058_-	hypothetical protein	A0A0A7NPV8	Enterobacteria_phage	7.6e-63	68.0
AXB20841.1\|3208058_3209246_-\|tail	Putative prophage major tail sheath protein	A0A0A7NV69	Enterobacteria_phage	3.7e-185	82.2
AXB20842.1\|3209404_3210532_+	hypothetical protein	A0A0A7NQ97	Enterobacteria_phage	9.9e-156	77.0
AXB20843.1\|3210577_3210838_+	hypothetical protein	NA	NA	NA	NA
AXB20844.1\|3211071_3211212_+	Protein HokA	S5M7Q0	Escherichia_phage	4.1e-11	69.6

DBSCAN-SWA_19

3343441 : 3358747

Salmonella_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB20970.1\|3343441_3343654_+	Cold shock protein YdfK	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
AXB20971.1\|3343650_3344064_+	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.5e-72	98.5
AXB20972.1\|3344299_3344533_+	Cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.4e-35	97.4
AXB20973.1\|3344806_3345448_+	Glutathione S-transferase GST-6.0	NA	NA	NA	NA
AXB20974.1\|3345618_3346137_-	hypothetical protein	A0A0U2QV64	Escherichia_phage	5.6e-45	51.4
AXB20975.1\|3346356_3346467_-	hypothetical protein	NA	NA	NA	NA
AXB20976.1\|3346444_3346753_-	hypothetical protein	NA	NA	NA	NA
AXB20977.1\|3346938_3347181_+	hypothetical protein	NA	NA	NA	NA
AXB20978.1\|3347222_3347594_-	hypothetical protein	NA	NA	NA	NA
AXB20979.1\|3347590_3347956_-	hypothetical protein	A0A1I9KFD3	Aeromonas_phage	5.1e-21	59.5
AXB20980.1\|3348357_3349041_+	hypothetical protein	Q9MBM0	Phage_Gifsy-2	4.7e-92	74.4
AXB20981.1\|3349192_3349975_-	hypothetical protein	F1C595	Cronobacter_phage	5.2e-95	67.4
AXB20982.1\|3350161_3352180_-	hypothetical protein	A0A1W6JPG0	Morganella_phage	2.8e-177	58.8
AXB20983.1\|3352189_3352837_-	hypothetical protein	A0A1B5FPB4	Escherichia_phage	3.1e-29	42.9
AXB20984.1\|3352829_3353213_-	hypothetical protein	NA	NA	NA	NA
AXB20985.1\|3353302_3353605_-	hypothetical protein	NA	NA	NA	NA
AXB20986.1\|3353601_3354396_-	hypothetical protein	F1C5A3	Cronobacter_phage	1.2e-46	66.0
AXB20987.1\|3354406_3354667_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	2.8e-21	73.1
AXB20988.1\|3354709_3354937_-	hypothetical protein	NA	NA	NA	NA
AXB20989.1\|3354929_3355100_-	hypothetical protein	NA	NA	NA	NA
AXB20990.1\|3355092_3355491_-	DNA primase	A0A286SGR4	Klebsiella_phage	2.4e-11	55.9
AXB20991.1\|3355483_3355645_-	hypothetical protein	NA	NA	NA	NA
AXB20992.1\|3355637_3355925_-	hypothetical protein	A0A2H4JGW3	uncultured_Caudovirales_phage	6.0e-17	53.2
AXB20993.1\|3356108_3356294_+	hypothetical protein	NA	NA	NA	NA
AXB20994.1\|3356556_3357855_-	hypothetical protein	NA	NA	NA	NA
AXB20995.1\|3357851_3358448_-	hypothetical protein	A0A1X9SFL9	Acinetobacter_phage	4.6e-19	47.7
AXB20996.1\|3358549_3358747_-	hypothetical protein	A0A1V0E8E5	Vibrio_phage	6.6e-07	36.4

DBSCAN-SWA_20

4011676 : 4021620

Enterobacteria_phage(88.89%)

integrase

attL 4011308:4011321|attR 4021790:4021803

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4011308:4011321	attL	NA	NA	NA	NA
AXB21625.1\|4011676_4014010_-	DNA primase TraC	Q7M2A8	Enterobacteria_phage	0.0e+00	82.0
AXB21626.1\|4014024_4014345_-	hypothetical protein	NA	NA	NA	NA
AXB21627.1\|4014341_4014602_-	hypothetical protein	NA	NA	NA	NA
AXB21628.1\|4014673_4015123_-	hypothetical protein	Q7M298	Enterobacteria_phage	5.7e-46	68.1
AXB21629.1\|4015115_4015415_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	5.9e-31	67.7
AXB21630.1\|4015407_4015962_-	hypothetical protein	Q7M2A7	Enterobacteria_phage	3.0e-36	74.8
AXB21631.1\|4016016_4016223_-	hypothetical protein	Q7M299	Enterobacteria_phage	3.0e-10	58.1
AXB21632.1\|4016775_4017579_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	6.7e-13	25.8
AXB21633.1\|4017575_4017818_+	hypothetical protein	Q7M294	Enterobacteria_phage	2.4e-19	56.8
AXB21634.1\|4017834_4018410_+	hypothetical protein	Q7M2A1	Enterobacteria_phage	6.6e-39	51.4
AXB21635.1\|4018801_4019107_+	hypothetical protein	NA	NA	NA	NA
AXB21636.1\|4019081_4019726_+	hypothetical protein	NA	NA	NA	NA
AXB21637.1\|4019725_4020304_+	hypothetical protein	NA	NA	NA	NA
AXB21638.1\|4020342_4021620_-\|integrase	Prophage integrase IntA	B7SYF8	Stenotrophomonas_phage	1.3e-74	40.5
4021790:4021803	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030838

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection