CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP011848	Clostridioides difficile strain DSM 27640 chromosome, complete genome	12 crisprs	cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	0	47	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP011848_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_1

150328-150406

Orphan

Consensus_repeat	Method
TGTTTATAATGTGGATAATATTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011848_1

>merge|CP011848|1|150328-150406|CRISPRCasFinder
TGTTTATAATGTGGATAATATTTAATGTAATAAGTTAAAGCAATATGAATCAACTGTTTATAATGTGGATAATATTATA

>CP011848|1|1|150328-150406|CRISPRCasFinder
TGTTTATAATGTGGATAATATTTAA	TGTAATAAGTTAAAGCAATATGAATCAAC
TGTTTATAATGTGGATAATATTATA

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB66789.1\|162928_163768_+\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|224539
CP011848.1\|AXB66798.1\|170765_172112_+\|phosphoglucomutase/phosphomannomutase-mutase	unknown	unknown	gnl\|CDD\|237670
CP011848.1\|AXB66786.1\|145377_146562_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235596
CP011848.1\|AXB66779.1\|127578_128412_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|275313
CP011848.1\|AXB66792.1\|166173_167253_+\|butyrate-kinase	unknown	unknown	gnl\|CDD\|235099
CP011848.1\|AXB66781.1\|129259_130063_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223692
CP011848.1\|AXB66794.1\|167962_168178_+\|ferredoxin	unknown	unknown	gnl\|CDD\|225131
CP011848.1\|AXB66797.1\|170038_170596_+\|subunit-of-oxidoreductase	unknown	unknown	gnl\|CDD\|376567
CP011848.1\|AXB66791.1\|165249_166152_+\|phosphate-butyryltransferase	unknown	unknown	gnl\|CDD\|180267
CP011848.1\|AXB66795.1\|168206_169286_+\|2-ketoisovalerate-ferredoxin-reductase	unknown	unknown	gnl\|CDD\|235942
CP011848.1\|AXB66783.1\|130945_131377_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP011848.1\|AXB66787.1\|146934_149286_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|235937
CP011848.1\|AXB66785.1\|132256_133009_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|274337
CP011848.1\|AXB66780.1\|128399_129266_+\|cobalt-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|237455
CP011848.1\|AXB66790.1\|163764_164946_+\|membrane-associated-protein	unknown	unknown	gnl\|CDD\|227193
CP011848.1\|AXB66788.1\|149307_149847_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274161
CP011848.1\|AXB66793.1\|167242_167920_+\|ATP/GTP-binding-protein	unknown	unknown	unknown
CP011848.1\|AXB66796.1\|169285_170038_+\|subunit-of-oxidoreductase	unknown	unknown	gnl\|CDD\|239470
CP011848.1\|AXB66784.1\|131405_131798_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP011848.1\|AXB66782.1\|130094_130826_+\|tRNA-pseudouridine-synthase-1	unknown	unknown	gnl\|CDD\|234577

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB66789.1\|162928_163768_+\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	1.4029e-80
CP011848.1\|AXB66798.1\|170765_172112_+\|phosphoglucomutase/phosphomannomutase-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
CP011848.1\|AXB66786.1\|145377_146562_-\|aspartate-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	2.82682e-180
CP011848.1\|AXB66779.1\|127578_128412_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	2.34653e-173
CP011848.1\|AXB66792.1\|166173_167253_+\|butyrate-kinase	gnl\|CDD\|235099	PRK03011, PRK03011, butyrate kinase; Provisional.	0
CP011848.1\|AXB66781.1\|129259_130063_+\|ABC-transporter-permease	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.3503e-50
CP011848.1\|AXB66794.1\|167962_168178_+\|ferredoxin	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	6.6539e-10
CP011848.1\|AXB66797.1\|170038_170596_+\|subunit-of-oxidoreductase	gnl\|CDD\|376567	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase. This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganisms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.	1.49735e-43
CP011848.1\|AXB66791.1\|165249_166152_+\|phosphate-butyryltransferase	gnl\|CDD\|180267	PRK05805, PRK05805, phosphate butyryltransferase; Validated.	1.26101e-179
CP011848.1\|AXB66795.1\|168206_169286_+\|2-ketoisovalerate-ferredoxin-reductase	gnl\|CDD\|235942	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated.	0
CP011848.1\|AXB66783.1\|130945_131377_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.05591e-98
CP011848.1\|AXB66787.1\|146934_149286_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|235937	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
CP011848.1\|AXB66785.1\|132256_133009_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|274337	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	2.38976e-78
CP011848.1\|AXB66780.1\|128399_129266_+\|cobalt-transporter-ATP-binding-subunit	gnl\|CDD\|237455	PRK13637, cbiO, energy-coupling factor transporter ATPase.	0
CP011848.1\|AXB66790.1\|163764_164946_+\|membrane-associated-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	2.07958e-23
CP011848.1\|AXB66788.1\|149307_149847_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274161	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	3.78376e-50
CP011848.1\|AXB66796.1\|169285_170038_+\|subunit-of-oxidoreductase	gnl\|CDD\|239470	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.	1.15077e-77
CP011848.1\|AXB66784.1\|131405_131798_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.31674e-84
CP011848.1\|AXB66782.1\|130094_130826_+\|tRNA-pseudouridine-synthase-1	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	6.63504e-129

>CP011848.1|AXB66788.1|149307_149847_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MKIRMSSTISYDSIVDGPGLRMVIWTQGCIHNCKECHNPQTHDLCGGFYMDTEEIINKVKSLKLQKGITLSGGEPFLQPEPLEEIAREAKINGLDVWSYTGFTFEQLLDKKNRAYFKNLNLLKQIDILVDGKFIAEKKDISLKFRGSSNQRIIDVQKSLKYKKVFLVEQYMKDDLSIAE
>CP011848.1|AXB66787.1|146934_149286_+|anaerobic-ribonucleoside-triphosphate-reductase
MVEFVKKRDGRVIPFNEDRITRAIFLAATNVAEREGIVPDYKLSEQLTQEVIKFLNHKYSESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDADIKRENANINGNTAMGTMLQYGSTVSKEFCKTHILKPEHSFAHDNGDIHIHDMDFLNMGTLTCCQIDVKKLFNGGFSTGHGFLREPQDIISYGALAAIAIQSNQNDQHGGQSIPFFDYGLAEGVYKTFKKFYIGNLAKALKLFKGIENNDVIKNIVYNTEKETNQKVGLKRDELYLNLEKEKLIQTFDIDDELVNKMQNFAFEESYRETDKKTYQSMEAFIHNLNTMHSRAGAQVPFSSVNFGTDTSEEGRMVTKNLLLSQERGLGNGETPIFPILIFKVKEGINLNPEDPNYDLFKLSCRVSAKRLFPNFSFLDAPFNAKYYKKGEPDTEATYMGCRTRVLSNVCGSETVSGRGNISFTTVNLPRLGIKHGIINNEKANLDGFFEELDEKINLIIEQLLERFEVQGNKKMKNFPFLMGQGVWKGSDDLVPEDTLKEVIKQGTLTIGFIGLAECLIALIGKHHGESKEAQELGLKIVSHMRHKMDEATDKYKLNFSLMGTPAEGLSGRFTKIDKKVYGEIKGITDKEYYTNSFHVPVYYNISAYDKIEIEAPYHELTNAGHITYVELDGDPSDNLEAFETVIKAMKDLGIGYGSINHPVDRDPICGFSGVITSNICPVCGRNEDESDIKFERIRRITGYLVGTVDRFNNAKKAEVRDRVKHR
>CP011848.1|AXB66786.1|145377_146562_-|aspartate-aminotransferase
MLSKRLNFITPSYTIGISSKVKEMESNGVKVINLSIGEPDFNVPNNAKSYGIDSLNKDYTKYDLVPGLKILREEICKKLIEENNCNYSIDEIVVSSGAKNSITNTLLALTDEGDEVLLPKPYWVSYPEMIKLVNAVPVFIDTKKENGFKLTKEELEKSITDKTKILVINNPSNPTGSVYTKDELIEIVDVCIQNKIYILADEIYEKICYTGEFTSIASLSEEAKDITITINGFSKSAAMTGLRLGYTASNKTIAKAMSSIQGHLISHPSLTAQYIAYGALKDCSIDIDNMVKTYKSRRDLIKSKLDSIDNVGYVNPNGAFYIFIDLSKVSEKFEYKDSFSIEFCNQFLEEYNVAVVPGIAFGMDKYIRISYACSENTFLSGLDKLKEFVYKIMA
>CP011848.1|AXB66785.1|132256_133009_+|germination-specific-N-acetylmuramoyl-L-alanine-amidase
MEYYSVFISIHIQGDVVRKYIKHIIFSFAMICLVVVSIFEIKNISEDVIKYMPVTNKTIILDAGHGGIDPGALNKDKSTSEKDINLAITLKLRELIESSGGLVILTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLNAFEQSKYYGAQTFYPKDKQDSKELSKCIQEELKRVVDKTNNREVKPRDDIYLLKENNIPSVLIECGFLSNEKECKLLTDETYQEKIAWAIYIGIQKYLS
>CP011848.1|AXB66784.1|131405_131798_+|30S-ribosomal-protein-S9
MANVQYYGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETLIRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEGFLTRDARMKERKKYGLKAARRAPQFSKR
>CP011848.1|AXB66783.1|130945_131377_+|50S-ribosomal-protein-L13
MKSYIAKPADVQRKWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEHTHAAQNPEVLNFK
>CP011848.1|AXB66782.1|130094_130826_+|tRNA-pseudouridine-synthase-1
MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQIANFKINSGISIESIPMALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKKDDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKKVHY
>CP011848.1|AXB66781.1|129259_130063_+|ABC-transporter-permease
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMMTIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESVISRRDYMACVFQVVYLGAIIATRFIAI
>CP011848.1|AXB66780.1|128399_129266_+|cobalt-transporter-ATP-binding-subunit
MSIIVKNLTHIYNEGMPFASKALDDISFEIKDRDFVGLIGHTGSGKSTLIQHLNGLLKPSSGEIFINDFNITDKNLNLTEIRKRVGVVFQYPEYQLFEETIDKDIAFGPSNLGLEESEIHNRVKASMEAVGLDYEGFKDKSPFELSGGQKRRVAIAGVIAMNPEVLILDEPTAGLDPGGRDEIFNLIKDLHEKKNMTIILSSHSMDDMAKLAKTLIVMNHGSVEFMGTPREVFKSNASKLKDIGLDIPQVLELALKLREKGFDISEDILTLEEAKQEILKVVRGRGLC
>CP011848.1|AXB66779.1|127578_128412_+|ABC-transporter-ATP-binding-protein
MDNIVKVNNISFEYITDEAKLKAIDNLSLDVKKGEFVAIIGHNGSGKSTLSKNLNAILMPTEGNILIDDMDTKEEERLWDIRQTAGMVFQNPDNQIVATIVEEDVAFGPENLGIEPKEIRRIVEESLKSVGMYDLRDRQPHLLSGGQKQRVAIAGIIAMRPKCIIFDEATAMLDPSGRKEVMKTIKRLNKEENITVIHITHFMEEAVEADRVVVMEKGKKILEGTPREVFSKIKMLKEIGLDVPCMTELSSLLIEEGINISSDILTVDEMVMELCQL
>CP011848.1|AXB66789.1|162928_163768_+|DNA-integrity-scanning-protein-DisA
MLDINSFLNGFFNIILRMSIYDLIDISIVAYIFYKIFMFIKDTRAEQVFKGIIFLLLATQLSNTFKLHTVYWISLKALDYGVIAALIIFQPEFRAGLEHIGRAKFNLFGKNVNTSEETLNRNIEEIVEALYSLSRQKIGALIIMERETRISDIINTGTIIDAEISRQLLINIFIPNTPLHDGAVVIRDSKVKAAACFLPLTESKDLSKDLGTRHRAGIGVSEVSDCITLIVSEETGGVSIAKAGKLYRDISRERMMNILRSNLKTNTETRSFFKGGIFK
>CP011848.1|AXB66790.1|163764_164946_+|membrane-associated-protein
MINRLKNNTKIKIISFLSAIALWMYVMAVVDPEETKGFEDIPVSISNMSDLKDKNLVIYPDEKLTADVYIKGSLSKVQSVKKEDIHVYGTIEDPIQGQKEVYLKANIPQGVTLEFKHDVLVVNLEKNIKEKRDIKVEVSGNSKRNINKIELSKEFVDVSGPRTLVKEVKSVRANLDVGNETDDFSKKLQLIPLNSDGTKVEGVTLSSSFVTAKIELLKEKIVPIRVSLNDNKDNDVLKNYKLSKEQVTIKGKKEDIDKISYIKTKPIDLADLANGEEKEVSLEIPEGITLEDSSITIKLNDTKQLSAEFLYNAGDIELRNIPTNIDNPNVISDVDIKVVVESTEDLSKLNKKDISLYIDLSQGPEEDSKYKIKYETTYQFKKINIEPNIVEVE
>CP011848.1|AXB66791.1|165249_166152_+|phosphate-butyryltransferase
MRSFEEVIKFAKERGPKTISVACCQDKEVLMAVEMARKEKIANAILVGDIEKTKEIAKSIDMDIENYELIDIKDLAEASLKSVELVSQGKADMVMKGLVDTSIILKAVLNKEVGLRTGNVLSHVAVFDVEGYDRLFFVTDAAMNLAPDTNTKKQIIENACTVAHSLDISEPKVAAICAKEKVNPKMKDTVEAKELEEMYERGEIKGCMVGGPFAIDNAVSLEAAKHKGINHPVAGRADILLAPDIEGGNILYKALVFFSKSKNAGVIVGAKAPIILTSRADSEETKLNSIALGVLMAAKA
>CP011848.1|AXB66792.1|166173_167253_+|butyrate-kinase
MSKIFKILTINPGSTSTKIAVFDNEDLVFEKTLRHSSEEIGKYEKVSDQFEFRKQVIEEALKEGGVKTSELDAVVGRGGLLKPIKGGTYSVSAAMIEDLKVGVLGEHASNLGGIIAKQIGEEVNVPSYIVDPVVVDELEDVARISGMPEISRASVVHALNQKAIARRYAREINKKYEDINLIVAHMGGGVSVGAHKNGKIVDVANALDGEGPFSPERSGGLPVGALVKMCFSGKYTQDEIKKKIKGNGGLVAYLNTNDAREVEERIEAGDEKAKLVYEAMAYQISKEIGASAAVLKGDVKAILLTGGIAYSKMFTEMIADRVKFIADVKVYPGEDEMIALAQGGLRVLTGEEEAQVYDN
>CP011848.1|AXB66793.1|167242_167920_+|ATP/GTP-binding-protein
MITNDKRIRIITGHYGSGKSEFAMNYVVKLRDMVSGKVAIADLDVVNVYFRTREKKELMKSLGIQPIDSSINAPTLDLPAVSAEVMSPMVDHSYNSVIDLGGDNVGARVIGRFSHLLKEGDYDMLFVINANREKTQTSEEVIQYIKEIEKSSKLKVTGLINNTHLIRFTTIDDVLRGQKVAKEVSEKCNIPIRYVACLENLVEQLPKDLEGEIFPIKLYMREDWM
>CP011848.1|AXB66794.1|167962_168178_+|ferredoxin
MAKGKVSFNQERCKGCGLCVEACPVKIIQLDSNVINKKGYNPATVFEMEKCIGCASCATMCPDVVITVERD
>CP011848.1|AXB66795.1|168206_169286_+|2-ketoisovalerate-ferredoxin-reductase
MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYYRSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQYEMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR
>CP011848.1|AXB66796.1|169285_170038_+|subunit-of-oxidoreductase
MAVVFKKTEGLQDTQTHYCPGCTHGIIHRLVGEVLEELGVLGDAVGVVPVGCSVLGYKYFNCDTQEAAHGRAPAAATGIKRVHPENTVFTYQGDGDLASIGTAEIVHAAARGEKITTIFVNNTTYGMTGGQMAPTTLVGQRATTAQSGRNAETQGYPIRVSEMLATLTGAVFVERVAVDTPAHVRQAKKAIKKAFQVQQAGLGFGIVEVLSTCPTNWGLAPNDALQWLRDNMIPYYPLGNFKNVEVEEVK
>CP011848.1|AXB66797.1|170038_170596_+|subunit-of-oxidoreductase
MSTARVICAGFGGQGVMSMGQLLTYAGMLEGKEVSWLPSYGPEMRGGTANCAVTVSNEPVGSPLITDDATAAILLNIPAFEKFKDDVIPGGKIIVNSSLIKEKVDRTDVDVYYIPANELAAELGNDKVANMIMLGAYLKVSDTVDIESVLEAFKKVFGPRKEKFVPLNREALQKGMDATCSKATN
>CP011848.1|AXB66798.1|170765_172112_+|phosphoglucomutase/phosphomannomutase-mutase
MRKYFGTDGVRGVANTELTCDLAYKLGRAGGFVLAQGDHRVKVVVGKDTRISGDMLEASLIAGLMSVGCDVITVGIIPTPAVAYLTRKYGADCGVVISASHNPVEYNGIKFFNKNGYKLDDEIELKIEEYIDDIDKIDCLPIGENVGRKLHEHCAQRDYVDYLKSIISTDFKGLKVVLDCANGASYKVAPIVFDELGASVISINSSPDGNNINYKCGSTHPEQLQRAVLEHNADLGLAYDGDADRLIAVNEKGQIVDGDHIMILSALNLKKNNKLAQDTLVVTVMSNIGLTIAAKENGINLSTTAVGDRYVLEDMVKNGYNLGGEQSGHMIFLDYNTTGDGVLSSLILANIILQEKKPLSEIASIMSQYPQVLVNATIKNENKNKYMEYPEIKTEIERIESILNGNGRVLIRPSGTEPLVRVMLEGKEEGQIKELATNLANLIQEKLS

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Crispr_ID: CP011848_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_3

1007152-1007229

TypeV

Consensus_repeat	Method
AAAAAATAAGAAAGTTTATAAATA	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of CP011848_3

>merge|CP011848|3|1007152-1007229|CRISPRCasFinder
AAAAAATAAGAAAGTTTATAAATACTAAGTTTTAAAAAAATTAATATAAACAACAAAAAAATAAAAAGTTTATAAATA

>CP011848|3|3|1007152-1007229|CRISPRCasFinder
AAAAAATAAGAAAGTTTATAAATA	CTAAGTTTTAAAAAAATTAATATAAACAAC
AAAAAAATAAAAAGTTTATAAATA

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB67511.1\|1008965_1009379_+\|S-adenosylmethionine-decarboxylase-proenzyme	unknown	unknown	gnl\|CDD\|274523
CP011848.1\|AXB67514.1\|1011307_1011508_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP011848.1\|AXB67517.1\|1015352_1015703_+\|metallo-beta-lactamase	unknown	unknown	gnl\|CDD\|293817
CP011848.1\|AXB67502.1\|995519_995966_+\|membrane-protease-activity-regulatory-membrane-protein	unknown	unknown	gnl\|CDD\|224501
CP011848.1\|AXB67518.1\|1016350_1017460_+\|transposase-like-protein-B	cas14j	-	gnl\|CDD\|223747
CP011848.1\|AXB67505.1\|998962_1000093_+\|glycogen-biosynthesis-protein	unknown	unknown	gnl\|CDD\|273966
CP011848.1\|AXB67506.1\|1000121_1001564_+\|glycogen-synthase	unknown	unknown	gnl\|CDD\|340822
CP011848.1\|AXB67504.1\|997800_998961_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|179997
CP011848.1\|AXB67510.1\|1007403_1008879_+\|arginine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
CP011848.1\|AXB67500.1\|991791_993372_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|223141
CP011848.1\|AXB67512.1\|1009408_1010260_+\|spermidine-synthase	unknown	unknown	gnl\|CDD\|234843
CP011848.1\|AXB67516.1\|1013722_1015219_+\|iron-dependent-hydrogenase	unknown	unknown	gnl\|CDD\|274983
CP011848.1\|AXB67501.1\|994126_995236_+\|transposase-like-protein-B	cas14j	-	gnl\|CDD\|223747
CP011848.1\|AXB67513.1\|1010249_1011128_+\|agmatinase	unknown	unknown	gnl\|CDD\|212539
CP011848.1\|AXB67507.1\|1001577_1003998_+\|glycogen-phosphorylase	unknown	unknown	gnl\|CDD\|340853
CP011848.1\|AXB67503.1\|995986_997030_+\|SPFH-domain/Band-7-family-protein	unknown	unknown	gnl\|CDD\|223407
CP011848.1\|AXB67519.1\|1017620_1018151_+\|metallo-beta-lactamase	unknown	unknown	gnl\|CDD\|225212
CP011848.1\|AXB67509.1\|1006112_1006766_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP011848.1\|AXB67515.1\|1011974_1013465_+\|iron-dependent-hydrogenase	unknown	unknown	gnl\|CDD\|274983
CP011848.1\|AXB67508.1\|1004002_1005868_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200477

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB67511.1\|1008965_1009379_+\|S-adenosylmethionine-decarboxylase-proenzyme	gnl\|CDD\|274523	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535). [Central intermediary metabolism, Polyamine biosynthesis].	5.95064e-61
CP011848.1\|AXB67514.1\|1011307_1011508_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.73549e-31
CP011848.1\|AXB67517.1\|1015352_1015703_+\|metallo-beta-lactamase	gnl\|CDD\|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	1.48044e-08
CP011848.1\|AXB67502.1\|995519_995966_+\|membrane-protease-activity-regulatory-membrane-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	6.55918e-19
CP011848.1\|AXB67518.1\|1016350_1017460_+\|transposase-like-protein-B	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.76657e-56
CP011848.1\|AXB67505.1\|998962_1000093_+\|glycogen-biosynthesis-protein	gnl\|CDD\|273966	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	1.56765e-123
CP011848.1\|AXB67506.1\|1000121_1001564_+\|glycogen-synthase	gnl\|CDD\|340822	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins. This family is most closely related to the GT5 family of glycosyltransferases. Glycogen synthase (EC:2.4.1.21) catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.	0
CP011848.1\|AXB67504.1\|997800_998961_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|179997	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
CP011848.1\|AXB67510.1\|1007403_1008879_+\|arginine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	4.94751e-127
CP011848.1\|AXB67500.1\|991791_993372_+\|carbohydrate-kinase	gnl\|CDD\|223141	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism].	7.56633e-83
CP011848.1\|AXB67512.1\|1009408_1010260_+\|spermidine-synthase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	2.20299e-166
CP011848.1\|AXB67516.1\|1013722_1015219_+\|iron-dependent-hydrogenase	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	0
CP011848.1\|AXB67501.1\|994126_995236_+\|transposase-like-protein-B	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.06796e-55
CP011848.1\|AXB67513.1\|1010249_1011128_+\|agmatinase	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	2.37252e-130
CP011848.1\|AXB67507.1\|1001577_1003998_+\|glycogen-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
CP011848.1\|AXB67503.1\|995986_997030_+\|SPFH-domain/Band-7-family-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	2.04722e-61
CP011848.1\|AXB67519.1\|1017620_1018151_+\|metallo-beta-lactamase	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.59632e-23
CP011848.1\|AXB67509.1\|1006112_1006766_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.75497e-41
CP011848.1\|AXB67515.1\|1011974_1013465_+\|iron-dependent-hydrogenase	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	0
CP011848.1\|AXB67508.1\|1004002_1005868_+\|alpha-amylase	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0

>CP011848.1|AXB67509.1|1006112_1006766_+|GntR-family-transcriptional-regulator
MKVDPLTTQVYDYISKKIQNGEYEANQRITESEICKSIGVSRTPAREALTRLAGENLLEKIPNKGFVVKEFQEKEKLDTYSVIGVLDALAGSSALQNLTESDLVKMEELTEMMAVSIKYKNYNSYLKLSNEFHDIYITKSDNQVLVNLLNSLRYNFMSKSYTSDNEDELYKMLTYSNNQHIEVVKFMRENDLENVERVLREHWKTIPIAEMKKEKLL
>CP011848.1|AXB67508.1|1004002_1005868_+|alpha-amylase
MQSVIEYNSWDKNFKAPFGALKFDEELTICVKVNEGYNIKSISLEINREEEMRTITLNEELDNDKLGKCFCGKIEKFDGTGVYFYYFKVDVEMDGQIKTLFYGKNRDNGYSCEYNYSDINKYQITVYKDFKVPTWYKEGILYHIFVDRFNNGNRSGKVDNPKKNSFIYGNWEDIPMYIKDSQGDVIRWDFHGGNLRGIINKLGYLKKLGVSILYLSPIFEASSNHKYDTGDYKKIDPMFGDEDTFKELIDKAKEKGISIVLDGVFSHTGADSKYFNMYGNYNSLGAYQSKESPYYSWYMFEEFPQKYKSWWDVKTLPNINELEHSYMDYIIYDNDSVINKWVNMGIKGWRLDVADELPTKFIRELKKELKKADDDSILIGEVWEDASNKISYGQRRSYLLGEELDSVMGYPFRNNMFSFLKGEINSYELCNRYMQIKENYPKESFRSNLNLIGTHDVTRAKTELNDDVDLVKLAVAIQMTFEGVPYIYYGDEAGLCGGVDPDNRRTYPWKNEDEDMLNFYRDVIKIRNKNKLLSSGNTEFIYTNNDSVFSFIRVDENNDRMLILVNRSENVESISLCIESSFIEEIPIKYSLKNANSTIQIENNELKVDLDSKSFRIFRVN
>CP011848.1|AXB67507.1|1001577_1003998_+|glycogen-phosphorylase
MVTISKKKFKQKFEVKMYSLYAQSIKEATDEQLLNVLCSLLKDEIAKKWVATKLDKKKEVYYFSLEFLIGRQLKSNLLNLNIEEEVREGLSELGINLDDLIEAEVDPALGNGGLGRLAACFLDSMASLNISGQGYGIRYKYGLFEQKFVNGYQVEVPDNWLTEGRYAWETVRPNEATMVKFGGEVELIKEGSHLKVIHKNYLPVMAMPYDIPIIGYQNQCINTLRLFKSEIPKRDFGELTSNALNYSGSYEEALKHKYYTEEISQVLYPDDSNYAGKLLRLKQEYFFVSAGIQDIIRKYKKNKLNIDNLFDKVAIHINDTHPTLCIPELMRILLDEENLSWDEAWEITKKTVSYTNHTIMSEAMEKWPVSMMKELLPRIYMIIEEINRRYVEELNNKGYEQDRIKRMSIIDCDNINMANLCIVTSHSVNGVAKLHTHILETEVLKDFYQDEPNKFNNKTNGIAHRRWLISSNPQLSNLITDLIGDSWKKDTLQLKNIEKFKNDSSVLQRLDDIKYNNKANLAKFIKDKYDLNVDPSSIFDVQVKRLHAYKRQLLNIFNVLHMYHELLDNPNLNLDPRTFIFGAKAAPGYYLAKCIIKFINSVASTINNDVRVKDKLKVVFLENYGVSLAEIIIPAANVSEQISTTTKEASGTSNMKFMMNGAITLATLDGANVEICEQVGKENMFLFGLSAEQVLNYNKYGGYSSLDLYHSNMDIKRVVDDLINGFIPNLGEEGRSIYNSLTTYNDEYFVLRDFENYGQAQADINRLYRDKEKWNKMSLVNIANSGFFSSDRTISEYAKDIWFKRV
>CP011848.1|AXB67506.1|1000121_1001564_+|glycogen-synthase
MKVFYVTAECWPFAKTGGLGDVSYALPKELKKEGVDVRVIMPKYSTIPSYLKDQLKEIAVFSVRVGWRNQYCGLLEMELDGVKFYFIDNEFYFRREDERKSIYGYGDDAERYTFFTDAVLEAISRIDFYPDVIHINDWHTGMLPLILKERYATLEGYKNIKTMYTIHNLQYQGVFDKHVLYDILDLPQKYFDNRDIEYYGSINFMKAGINFADKIITVSPTYANEIQTSFYGEQLDGLLRKESGKLKGILNGIDYDLNDPAKDKDIFVHYDVDSIDKKVENKLRLQDILGLKKDSSIPLIGIVSRLVSQKGFDLIAYMMPELMREDLQIVVLGTGEHQYQSMFNYYDSNFSDKVSARITFNASLAQQIYAASDMFLMPSLFEPCGIGQMLAMRYGSLPIVRETGGLRDTVTPYNKFTGEGNGFSFKNYNAHEMFFCLKNAIKVFKDKEKWIKLVENAMKTDNSWKKSAKEYIETYRDICD
>CP011848.1|AXB67505.1|998962_1000093_+|glycogen-biosynthesis-protein
MRNECLGIINLNKKGDPAINKLNYGRPIASTPIAGRYRIIDFALSNMINSGITKVGIFAKEKYRSLTDHIGSGKDWDLSRKKGGLSIFSPENTKYRNTYSHREGDIYTILANLDYIEKSEEEYILIAPSYMLCNLNYSQALEYHKKSHNDITIIYKNVNNANKDFAGNLTLNLDSNNRVINVGNNLGKFPRANICMETYIMKREDFVECIYNIVNKGSYCYLEEFIIEEAENMKIGAYEYTGYLKCVNSVESYFEMSKDLLNLEVADELLYSERKIFTKEKNESPTIYTDSAKVENSFIASGCLIEGTVKDSIIFRKVNVEKGTVIENSIVMQNCVIKSNAKLYNAILDKNTSVSNGKELRGDEKYPLVVEKNTNI
>CP011848.1|AXB67504.1|997800_998961_+|glucose-1-phosphate-adenylyltransferase
MKKEMLAMILAGGQGSRLGVFTKRIAKPAVSFGGKYRIIDFVLSNCSNSGIDTVGVLTQYRPLILNSHIGMGSHWDLDRINGGVYVLQPFMNEKEGNWYNGTAHAIYQNMDFVDTYNPEYVLILSGDHIYKMDYSKMLKFHKEKRSKATIAVIEVPWDEASRFGIMNTNEDSSIYEFEEKPSEPKSNLASMGVYIFDWKMLRNYFKEAEKNPEINYDDFGKNLIPKMLEDNVGMYAYPFKGYWRDVGTIQSLWDANMDIIKSPETLDLADPKWKIYTNTMAMPPQYIGKNANVHRSMIADGCRILGEVGNSVLSHGVVVGKGSKVIDSVIMPNVVIGENVTIEKAMIGECATINDNVQIKNVNNEINVVSEYENIEPRCVLIEGGL
>CP011848.1|AXB67503.1|995986_997030_+|SPFH-domain/Band-7-family-protein
MGTKIVLSIVLIVVVVAISLTCIRVIKQSKVGIIMRLGKFQKVAETGVHFLIPFLDKMAYVIDLREIVIDFPPQPVITKDNVTMQIDTVVYYKVTDPVRYVFEIANPIAAIENLTATTLRNIIGELDLDETLTSRDIINVKMRTILDEATDKWGIKVNRVELKNIMPPQDIQVAMEKQMRAERERREAILQAEGNKSAAILQAEGEKQSAILTAEAKKEAMVRVAEGEKESAILVAEGEAEAIRQTAIAKAQGEAEMIKRTQMATAEGLKLVFSAMKEADIDNNILALKSMEALEKMAEGKSTKLVLPSEAVNFLGTFKGIKEVMSDDNKEVLDIKEVLNDNESLKK
>CP011848.1|AXB67502.1|995519_995966_+|membrane-protease-activity-regulatory-membrane-protein
MKLIWLIVAVLFGIAEMLTPSLTLIWFSVGAVILIFLSSFIESIFLQILIFAVISIAMLVVATKKIVKKDKGYKSNTNLQAMMSKKGIVTEEISPNNTGLVVVEHETWTAISIDGEKIEKGSTVEVLKIEGVKLVVKKVDATVNVTNQ
>CP011848.1|AXB67501.1|994126_995236_+|transposase-like-protein-B
MEKAYKFRMYPNKKQQELINKTFGCCRFVYNKYLAKRIEVYKNDKETFTYKQCSSDLTNLKKELKWLKEPDKFSLQNALKDLDNAYKKFFKEKAGFPKFKSKKINRFSYKTNFTNGNIMYCGQHIKLPKLGMVKVRDKQIPQGRILNATISKEPSGRYYVSLCCTDVDIEVFENTNNQIGLDLGIKEFCISSCGEFIENPKYLKKSLNKLAKLQRELSRKTIGSLNRNKARLKVARLQEHIANQRNDFLQKLSTKLIKENDIICIEDLQVKNMIRNRKLSRLISDVSWSEFVRQLEYKANWHGRQIVKVGKFFASSQICNKCGYKNEEVKDLNIREWICPSCNEIHDRDINASINILKEGLRLITIQNK
>CP011848.1|AXB67500.1|991791_993372_+|carbohydrate-kinase
MLIGTSKLSRNVDTACVEEVGIPMIVLMENAVISAMKNMDIDMYNSYTVVCGVGNNGGDGLGIARHLNTYGKEVNVFLVGNLEKLSECSKINYNVLLNMGINIININKNDLSEKNYGDENEVDKIIKVEKQNIIKNKNLTIFKDRVSKSDVVVDAIFGTGLKRDITGIFKEVIDIVNDNSKNTYSIDIPSGIDSDNGNVLGTCIRANKTISFEFYKRGFLNYDTSTLIGDVVVEKIGVPDFITRKYHDEEFITDKTFVKNNIRRRDKHGFKSDFGKVSIVAGSKGFYGASFIATESAVKSGSGLVTLISSEDVQEKVSIRLTEAMTLNFEEERLNKLLNSSDAIGFGPGMGDNSQTFDKLLKIVENSNCPIVLDADGLNVMKDRCYKFLEWKNRFVITPHLGEMARLTGDSIGYIREHRVDVAKEFAQKYNLVVLLKGYQTVITDGKKTYINPTGNSCMATGGMGDCLLGMITSFIGQGMDILEATVSGAYIHGYIGDKLSKAMYTVNATDLISNISLTMKELLDI
>CP011848.1|AXB67510.1|1007403_1008879_+|arginine-decarboxylase
MDSEFANAVELSYECAPLLESLKEYSEKDIACFDVPGHVKNRGVAILNKYLGESLMKMDINSSPTMDNVSAPNGIIKNAQDLLAQAYMADEAFFITNGTTQAIHAMILSVIKPGEKVLLPRNIHKSVINALILCGGIPIFIQPEFDEKLGISLNITLEKVRTEIEKDCNIKALFFLNPTYYGVCADLESIIELCHKNNVLVLVDEAHGAHFPFHLDLPPSAISLGADMVAVSIHKTGGALTQSSALLLNRDNVSFEKVLQSINMLQSTSASYLLMASIDGARVNLVENGEKQLSKALNLSRYAKSKLNKIDGIKVLSTEILKQKGVKFIDETKLCINVKELNLTGFEVYDLLYKNFSIQVELGDSYNILALVSIGTNKSDIDRLVKALSIIAKIYRKESTLNEFNMVQINPIIKLNPREAFYAPKESVEINSCIDRICGESIMAYPPGIPIIAPGELITEEIMEYIIFLKNSNAYLTDVQDKNLDRILVIK
>CP011848.1|AXB67511.1|1008965_1009379_+|S-adenosylmethionine-decarboxylase-proenzyme
MKFETLGRHILVEYYNCDENVLKDPRLIENFMNDSALNAKATIVDSVFHHFNPWGVSGAVIIAESHLTIHTWPEYGYAAADFFTCGDIDPWKSFELLEQLLKSERSESTEIPRGLTTKIKKYSKKDLGKITHKPEAV
>CP011848.1|AXB67512.1|1009408_1010260_+|spermidine-synthase
MELWYTEEWTENVRFSIKVNKHLFEGKSQFQRIDVFDSDEFGKFLTIDGLMMVTYKDEFIYHEMITHVPMATNLNIKKVLVIGGGDGGTVRELSRYPQIEKIDMVEIDKMVVDVSKEYMDICSCKLDDKRVSLYFEDGVNFVKCAHDKSYDLIIVDSTDPIGPGEGLFSTDFYKDCYRILTDDGILVNQSESPYFDFNAKEMKRANKKLKQIFPISEVYQAHIPTYPSGHWLFGFASKKLNPVKNQDRNGWEKLSLKTKYYNSDIHLGSFMLPQYVKEMLDEE
>CP011848.1|AXB67513.1|1010249_1011128_+|agmatinase
MKNNFYHMNTFMSMDKNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIK
>CP011848.1|AXB67514.1|1011307_1011508_-|cold-shock-protein
MKNGIVKWFNNEKGFGFISVEGEDDVFVHFSAIQNDGYKTLEEGEKVSFDITQGNRGPQAENVNRI
>CP011848.1|AXB67515.1|1011974_1013465_+|iron-dependent-hydrogenase
MFQFETQIHKLRHDVLTAIARLGKEDNLTREAMDNIQYEIIKGEKPTYRCCVYKERAIISERVNVSMGLQPGQDKIDLDTMDIEEDEQIIYILEAACDSCPINEFTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKMYAVVAPAITGQVEANVTYGQIKNAIKSLGFVDVLEAACGADAVTVHESLEFAERMEKGEAFMTNSCCPGFVGYIEKTYPNHVGKISSTVSPMIASGRFIKSHEPDAKVVFIGPCTAKKSEAAKKELKGAVDYVLTFEEIMALFEAFDIDLAKCSNEDIDDASIFGRGFGAAGGLTKAIENYLAEKGIGVNFEPVKISGSREIKKTMTMANLGKLEGNFIEGMMCEGGCINGSGKFLSGAKVKATFDRKNSQSTKKSVLANTKIKDFSNINLEK
>CP011848.1|AXB67516.1|1013722_1015219_+|iron-dependent-hydrogenase
MFEFETQLKRLKHEVLTAVARLSIEENLTKENIEKIPYEIIKGEKARYRCCVYKEREVVLERAQLALSLTPNSKYGDINPDSVSLDTDEQIIYIVEAACDRCPINEFTVTELCRGCLAHRCKEACKFGAISYINGRAYINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGACISACPFGAISDKSLIAPVAKKLAKKENMYAIVAPAITGQIDSNITYGQLKNAIKSLGFVDMIEASCGADAVTVHESNELIERIKSGDNYMTNSCCPGFFKYIEKMFPDEKDRISSTVSPMVATGRLVKKIDSDAKVVFIGPCTAKKSEATEKSLKDSVDYVLTFEELMALFEAFNIDLSKCSNEDINDGSIFGRGFGASGGLAKSVQNYIAEKGLSFEFEPIKVSGPRQIKKTMTMAKLGRLEGNFIEGMMCEEGCINGAGKFLSGVKAKNTFDRKNGQSTKKSVLSNDKIKEFEDVNLER
>CP011848.1|AXB67517.1|1015352_1015703_+|metallo-beta-lactamase
MKKIVLKDILFLVTTLSIIVILLFVTNITTNSKIKSTSESYLKSDKNSVRQNGIQRSTKNTAFKTTILSTGKSDCILIEIGDKFIMIDTGEDKNGEQIVDKLKEKEINALDYLIKK
>CP011848.1|AXB67518.1|1016350_1017460_+|transposase-like-protein-B
MEKAYKFRIYPNKKQQELINKTFGCCRFVYNKYLAKRIDVYKSDKETFTYKQCSSDLTNLKKELKWLKEPDKFSLQNALKDLDNAYKKFFKEKAGFPKFKSKKINRFSYKTNFTNGNIMYCGQHIKLPKLGMVKVRDKQIPQGRILNATISKEPSGRYYVSLCCTDVDIEVFENTNNQIGLDLGIKEFCISSCGEFIENPKYLKRSLNKLAKLQRELSRKTIGSLNRNKARLKVAGLQEHIANQRNDFLQKLSTKLIKENDIICIEDLQVKNMIKNRKLSRLISDVSWSEFVRQLEYKANWHGRQIVKVGKFFASSQICNKCGYKNEEVKNLNIREWICPSCNETHDRDINASINILKEGLRLITIQNK
>CP011848.1|AXB67519.1|1017620_1018151_+|metallo-beta-lactamase
MLSSVKVKNIIQANYKKDSKQYDEYIDSLKKADIEPVLLKDNMNIVINSAEINIHPASKSKYESSNDYSIITNISYGAHKFLFAGDAEEERLSEFINGNTLKYDFVKMPHHGRYDKLTETFLESTSPQYAVITCSEKKEPEEGVLKILERLNIKTFLTSSGEVVINSDGKTLSVNQ

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Crispr_ID: CP011848_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_4

1302343-1303300

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTAAGTGGTATGTAAAG	PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAAG	CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAAG	CRT

14 spacers

The CRISPR arrays of CP011848_4

>merge|CP011848|4|1302343-1303300|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTAAGTGGTATGTAAAGTCTCCATCTCCAATTAACATAAATAATTCATCCGCTGGTTTTATATTAACTAAGTGGTATGTAAAGCCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAACGTTTTATATTAACTAAGTGGTATGTAAAGAAAATAAAAGAGTTTGAATTACCCATTTTTTCATGGTTTTATATTAACTAAGTGGTATGTAAAGTACGACATTGAATAAAATGGGTACAGAGACAATTTATAAGTTTTATATTAACTAAGTGGTATGTAAAGTTTATAAATCTTTTAATGACTGTCTCTGATGGTACAGGTTTTATATTAACTAAGTGGTATGTAAAGAAAGGAATAGATGATATGATTGCTAATGCTGAACAACAAGTTTTATATTAACTAAGTGGTATGTAAAGGGGTCTGACTTTAATATATATATATATATATATAAATTGTTTTATATTAACTAAGTGGTATGTAAAGTTATAAACTCCCACGACAAAATTAACTATAACCTCGTGTTTTATATTAACTAAGTGGTATGTAAAGAGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAAGTTTTATATTAACTAAGTGGTATGTAAAGGCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATGGTTTTATATTAACTAAGTGGTATGTAAAGATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAGGTTTTATATTAACTAAGTGGTATGTAAAGTTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAGGTTTTATATTAACTAAGTGGTATGTAAAGTGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTCGTTTTATATTAACTAAGTGGTATGTAAAGCTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTAGTTTTATATTAACTAAGTGGTATGTAAAG

>CP011848|4|1|1302343-1303300|PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAAG	TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG
GTTTTATATTAACTAAGTGGTATGTAAAG	CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG
GTTTTATATTAACTAAGTGGTATGTAAAG	TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA
GTTTTATATTAACTAAGTGGTATGTAAAG	TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA
GTTTTATATTAACTAAGTGGTATGTAAAG	GGGTCTGACTTTAATATATATATATATATATATAAATT
GTTTTATATTAACTAAGTGGTATGTAAAG	TTATAAACTCCCACGACAAAATTAACTATAACCTCGT
GTTTTATATTAACTAAGTGGTATGTAAAG	AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA
GTTTTATATTAACTAAGTGGTATGTAAAG	GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG
GTTTTATATTAACTAAGTGGTATGTAAAG	ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG
GTTTTATATTAACTAAGTGGTATGTAAAG	TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG
GTTTTATATTAACTAAGTGGTATGTAAAG	TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC
GTTTTATATTAACTAAGTGGTATGTAAAG	CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA
GTTTTATATTAACTAAGTGGTATGTAAAG

>CP011848|4|4|1302343-1303300|CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAAG	TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG
GTTTTATATTAACTAAGTGGTATGTAAAG	CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG
GTTTTATATTAACTAAGTGGTATGTAAAG	TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA
GTTTTATATTAACTAAGTGGTATGTAAAG	TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA
GTTTTATATTAACTAAGTGGTATGTAAAG	GGGTCTGACTTTAATATATATATATATATATATAAATT
GTTTTATATTAACTAAGTGGTATGTAAAG	TTATAAACTCCCACGACAAAATTAACTATAACCTCGT
GTTTTATATTAACTAAGTGGTATGTAAAG	AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA
GTTTTATATTAACTAAGTGGTATGTAAAG	GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG
GTTTTATATTAACTAAGTGGTATGTAAAG	ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG
GTTTTATATTAACTAAGTGGTATGTAAAG	TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG
GTTTTATATTAACTAAGTGGTATGTAAAG	TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC
GTTTTATATTAACTAAGTGGTATGTAAAG	CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA
GTTTTATATTAACTAAGTGGTATGTAAAG

>CP011848|4|1|1302343-1303300|CRT
GTTTTATATTAACTAAGTGGTATGTAAAG	TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG
GTTTTATATTAACTAAGTGGTATGTAAAG	CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG
GTTTTATATTAACTAAGTGGTATGTAAAG	TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA
GTTTTATATTAACTAAGTGGTATGTAAAG	TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA
GTTTTATATTAACTAAGTGGTATGTAAAG	GGGTCTGACTTTAATATATATATATATATATATAAATT
GTTTTATATTAACTAAGTGGTATGTAAAG	TTATAAACTCCCACGACAAAATTAACTATAACCTCGT
GTTTTATATTAACTAAGTGGTATGTAAAG	AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA
GTTTTATATTAACTAAGTGGTATGTAAAG	GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG
GTTTTATATTAACTAAGTGGTATGTAAAG	ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG
GTTTTATATTAACTAAGTGGTATGTAAAG	TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG
GTTTTATATTAACTAAGTGGTATGTAAAG	TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC
GTTTTATATTAACTAAGTGGTATGTAAAG	CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA
GTTTTATATTAACTAAGTGGTATGTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB67765.1\|1298133_1299561_+\|cell-surface-protein	unknown	unknown	gnl\|CDD\|380277
CP011848.1\|AXB67764.1\|1297121_1297943_-\|lipoprotein	unknown	unknown	gnl\|CDD\|276809
CP011848.1\|AXB67770.1\|1305478_1305592_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67776.1\|1310237_1310420_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP011848.1\|AXB67775.1\|1309224_1309794_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67766.1\|1299870_1300542_+\|transposase	unknown	unknown	gnl\|CDD\|379233
CP011848.1\|AXB67771.1\|1305799_1306009_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67767.1\|1300535_1301435_+\|integrase,-catalytic-region	unknown	unknown	gnl\|CDD\|222853
CP011848.1\|AXB67777.1\|1310947_1311457_+\|teicoplanin-resistance-protein	unknown	unknown	gnl\|CDD\|377417
CP011848.1\|AXB67768.1\|1304516_1304672_+\|phage-anti-repressor	unknown	unknown	unknown
CP011848.1\|AXB67758.1\|1290180_1291260_+\|exported-aminodeoxychorismate-lyase	unknown	unknown	gnl\|CDD\|376862
CP011848.1\|AXB67773.1\|1306887_1307232_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67763.1\|1295479_1296997_-\|site-specific-recombinase	unknown	unknown	gnl\|CDD\|238206
CP011848.1\|AXB67774.1\|1308615_1308933_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67772.1\|1306377_1306761_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67761.1\|1293411_1295076_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
CP011848.1\|AXB67762.1\|1295172_1295457_-\|RNA-polymerase-sigma-27/28-subunit-RpsK/SigK	unknown	unknown	gnl\|CDD\|180266
CP011848.1\|AXB67769.1\|1304917_1305169_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67759.1\|1291431_1292106_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
CP011848.1\|AXB67760.1\|1292092_1293340_+\|protease	unknown	unknown	gnl\|CDD\|223896

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB67765.1\|1298133_1299561_+\|cell-surface-protein	gnl\|CDD\|380277	NF033435, S-layer_Clost, S-layer protein SlpA. In Clostridiodes difficile, the S-layer protein precursor, SlpA, is one member of a large paralogous family of protein that share several cell wall-binding repeats. SlpA is cleaved into a larger and smaller protein. The S-layer protein itself is important to adhesion, and portions of it are highly variable, and then N-terminal and C-terminal are well-conserved.	1.07946e-17
CP011848.1\|AXB67764.1\|1297121_1297943_-\|lipoprotein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.63351e-09
CP011848.1\|AXB67776.1\|1310237_1310420_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.95465e-10
CP011848.1\|AXB67766.1\|1299870_1300542_+\|transposase	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	1.21802e-08
CP011848.1\|AXB67767.1\|1300535_1301435_+\|integrase,-catalytic-region	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.35241e-48
CP011848.1\|AXB67777.1\|1310947_1311457_+\|teicoplanin-resistance-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.65878e-17
CP011848.1\|AXB67758.1\|1290180_1291260_+\|exported-aminodeoxychorismate-lyase	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	3.18128e-117
CP011848.1\|AXB67763.1\|1295479_1296997_-\|site-specific-recombinase	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	1.71171e-29
CP011848.1\|AXB67761.1\|1293411_1295076_+\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	5.50889e-97
CP011848.1\|AXB67762.1\|1295172_1295457_-\|RNA-polymerase-sigma-27/28-subunit-RpsK/SigK	gnl\|CDD\|180266	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK.	1.70744e-41
CP011848.1\|AXB67759.1\|1291431_1292106_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.3234e-60
CP011848.1\|AXB67760.1\|1292092_1293340_+\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	9.81255e-145

>CP011848.1|AXB67767.1|1300535_1301435_+|integrase,-catalytic-region
MVITLSKNEDKYKAIQSLFNEKKASLIQLCEIAKVNRSGYYKWLNRDKSNLELENIKLATLITKIYEEKKGVFGSLRMTLQLNREYKLNVNHKRVYRLMRAVGLRSICRKKKFSYVKCTPEVIAENVLNRKFSADKTSQKWLTDVTEFKLTNGTKAYLSAILDLGDRSIVSYVIGKSNNNNLVFETFNKAIEVYPNAKPIFHSDRGYQYTSRVFKSKLLTQGMIQSMSRVGHCIDNAPMEGFWGILKVEMYYLRKFDTYEQLVKAIDDYIYYYNNFRYQKRLNSMSPLEFRKYLSTEIA
>CP011848.1|AXB67766.1|1299870_1300542_+|transposase
MSKTKVSSEQKIEAIESYLKGENSVIKIMEELNIGKRTFREWMRNYETFGNDGLIKQSHKSCYSKEFKLNAIESYLNGEGSYDTISKKYKMRSVHPLKAWVKEYNLHKVIKETPKGGLFMETRKTTLDERAEIVKDCIEHDLNYNLIAKKYFVSYSQVRRWTLKYKENGIDALEDRRGKAKKEDELTQLDEIKLELKIVKAEKHKLQLENEFLKKLKIIERGW
>CP011848.1|AXB67765.1|1298133_1299561_+|cell-surface-protein
MKIKKLLTIGLSLSIFIASCPISANALDKIESIKGADKYETAGIIADKQNYTTAILINADSTMADGLSASGLAGAINAPILLTKKNNIPNATLKRLEKAKKVYIIGGENSINKYTETVLKGKGIEIKRLQGSDRIKTSYNVAKEINSINKVNKVILTNAFKGEPDAMSAAPVAVRDKAAIVLTDGKSVPFNTTGVESYVIGGTSSMNDKLVKDTNSTRLGGTDRYDTNKKIINKFYSGVKEFYIASGTDLVYALVGSTIAKNNAIVLVGNDSNKSVLKSTIKLTAIGNLSDSILQQCLNVTKNIGDSNTGREYTVEDAANAVKKLLGVKKFYYEPNYSEDEDLIFLLDKNFDFSGKEYYVFAYIKQGAEGDVRYCVAKNDMSKVYTYDVNGNMKVCNPDDYKNKGSITEEQAKQIALKECAKRHKVSINNLVVDMIDFRDDIYSGNVYAVKINSKNSNGTFGWFFIDIETGKIYN
>CP011848.1|AXB67764.1|1297121_1297943_-|lipoprotein
MIISKKITAILVSFLIMISMVGCAPKESATEVAKKYLDSIEIKDYEVAYNLLSKDSKESVSLEKFEEYQDTLFKLQTLKDYKLGEENKVEKYKYSNKEYTNLVKIKETDTIKYITENKEDTANFDRYFIIEDNEYKLLWHKDFKRALSSNYVKIARSETKKDEDKDYNKAAIDIKKAIEIDDKNPLAYYTQSYIYIELQRYDEALKSIDKSLEYLDKNNEAYKIDASDAYNLRGVIFMSKSEFNKARESYNKALELNPDNEYAKTNLNDIKGL
>CP011848.1|AXB67763.1|1295479_1296997_-|site-specific-recombinase
MSVAIYLRKSRADEEAEKQGEFETLSRHKSTLLKLAKEQNLDVIEIKEELVSGESIIHRPKMLELLKEVEENKYDAVLVMDLDRLGRGDMKDQGIILETFKESKTKIITPRKTYDLTDEFDEEYSEFEAFMARKELKLISRRMQRGRIKSVEEGNFIGTSAPFGYDAVTTGRKERILVPNKDADVVRTIFDLYINEDMGCSKISKYLNNLGIKTATGANWYNSAITNIIKNKVYCGYIQWQKKDYKKSKNPNKIKTVKLRPKDEWIEAKGKHEPLISEITWKKAQNILKKNGHVSYGNQIKNPLAGIVICKNCGRPLVYRPYADHDYIICYHPGCNKSSRFEFIEAAILKSLEDTVKKYQLKACDLDLDKNNKDSNIEFQKRVLKGLETELKELGKQKNKLYDLLERGIYDEDTFIERSNNISSRTEEIKDSIKTVKNRLSTVKKDNSKIIEDIKTVLSLYHDSDSLGKNKLLKSVIDKAIYYKSKEQKLDSFELMVHLKLHEDQ
>CP011848.1|AXB67762.1|1295172_1295457_-|RNA-polymerase-sigma-27/28-subunit-RpsK/SigK
MCNEISLLDILGTEANYVLDEVELKVQVGKLYEQLNKILTPREREIVQLRYGLTPYGYKTQREIAQKLDISRSYVSRIEKKALKKLEKELVQES
>CP011848.1|AXB67761.1|1293411_1295076_+|penicillin-binding-protein
MSKKKTPFLKKVGKRSWCIFTIILIIYSVLIYRLVDIQVLKGDKYKQSVESQSVEKVELNSGRGIIYDRNNKKLTDTSKSQVLIVEKEKLNNNYKILELIKKATKMNDLDIYKAVQEQLTRPIIQIQTKNIDKSMKKELEKNGIMVEEKTMRYAKDGLLSHTIGYIKEDDKSGQSGIEKSMDSVLRNSNEKYISAFKAGDAGNEKSLNILKGSVKTVDNKDKDRHLKTTIDYNIQKKLEQILNKEENPTAAIISEASTGEILAMCSRPNFDQNDISKSLKGKNGEFENRVIKATYPPGSVFKMVVLFSALENGVIDENYTYNCTGKTKVGNTNEILRCNKRDGHGFQNLRQAFSNSCNPAFLDIAMKLGKEKILKSAEKLHLFEKVDIGLDEEKIREAPKNISIRNLAIGQENIEFTPLQINQMTQIIANNGTFKPLYLYKSLVDNNMNTIKTYKSSKKEELISPYVCTQVKEYMKSVSRIGTAKDLKDIEGGCGVKTGTAQSSLNKKAIDHGWITGFYPEERPKYVITVLVEGTQKGNKSATPIFKEICESIK
>CP011848.1|AXB67760.1|1292092_1293340_+|protease
MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHERGKKVFVTVNIIPHNEDFLQLEDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPLDMDIEAFMHGAMCISYSGRCLISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIPELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRAPENWKFNPMWMEELKKGSHRHFTSGFYLNKPTTEDQNYQSASYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMGPYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVGKDYMLRKVIEEKVEE
>CP011848.1|AXB67759.1|1291431_1292106_+|O-methyltransferase
MSNIVNDLVEDYIRVTLKEKEGFLKDLEIYAEENSVPIIHKEVSDLLKVLLKVQKPKRILEVGCAIGYSSIFFASIIGKDADIITVERNEKMIEKAKENIKLAGFDNNITILEGDAEEKLSQVQGEFDLIFIDAAKGQYKLFFDLVIDKLKDGGLLVSDNILYKGMVAHDDFVVRRKKTIVKRMRNYLDYICNCDYLSTSLVPIGDGVALSYKESKRGDVDGIK
>CP011848.1|AXB67758.1|1290180_1291260_+|exported-aminodeoxychorismate-lyase
MNFKENRLKIAVLIIVILIILAGIFVFIQIGPYDKNNKKDVIIDVPSGASVGKISDILYENKLIKNELLFKLLVKVSNKAPSIKSGTYLLNQSYSNNDIISLLVSGKIYQDGIKVTIPEGATSKEIIAMLVSKNLGDKATFENLIKKPQEFYDKFPYLKEDGITSLEGFLYPETYYFNSKKQSEEDILSEMLKVFDSKYTDKFKKKQKELNMTLQEVMEMASIIEKEAVLDKDRPIIASVFYNRLKVGMPLQSDATIQYIFEERKKIVTYDDLKIDSPYNSYKNKGLPPTPISNPGIKSIEAALYPEKTDYLYFVAKIDGGNNYSTNYQDHLKYVKEYKEARDKQSKDTKATNKENTKK
>CP011848.1|AXB67768.1|1304516_1304672_+|phage-anti-repressor
MALDVKIEVKIIKDVVILNIIHWKKETSLLTVKIARGQGDLSYVKYFTNES
>CP011848.1|AXB67769.1|1304917_1305169_+|hypothetical-protein
MSSYFITRGDVMKILQQFKPYKYDKEKNIEYDEKIIANQNTEVYIVYPRISDEENRRRWEEFNEVAKEVAINIAMKKVETVES
>CP011848.1|AXB67770.1|1305478_1305592_+|hypothetical-protein
MVEVNIKIKGEVSEIIDSIRGIFNSFDEELILDIKSE
>CP011848.1|AXB67771.1|1305799_1306009_+|hypothetical-protein
MMGLKLKRRYKNVLIYINIRTIIHINCKIKFIELYLTFNELKNKLANNEKTTVINENNKAFSGLVDFSN
>CP011848.1|AXB67772.1|1306377_1306761_-|hypothetical-protein
MRKKFFIGILIVLIISVIAILNIKNDKNVFIGESENWKAKFVTTEGHSKLEIKYKNSKDVVEQKFNYSYQFIDGEDAVVVVKNEILEAGQEKAIKIQRPGLYSNRESSYKLIISWNGNEETINLKKK
>CP011848.1|AXB67773.1|1306887_1307232_+|hypothetical-protein
MNYRLKKSVTTILSLLIMTILLPTNASASKVEDSSMKVMYSEKQVTDMDKLYDMAKNGITDVKSSNEKGIIKNARTGESIYVDSISTTQLLEVKQSKNLTSKIYSKTVFLILIQ
>CP011848.1|AXB67774.1|1308615_1308933_-|hypothetical-protein
MDFGNINLILIGIIVIIGTTIIYLIKPKTAFCSKKYFNKLESIYGNIDKKKTVKLEVLYRYVTGLEYISIGLFTRRLDITIIAIILVATITVILYYLVRKRYITI
>CP011848.1|AXB67775.1|1309224_1309794_-|hypothetical-protein
MKLRNPKIKKLLSVALLAALIGIPIGQTANAMEISNNVPSYIENNPTTIEDLEINDSQLPKPGTVTYIDINKLIKNLKENGIDTTLIENELYYRKAGTNKIVWTKTGFDLYLSKGVALTLAGAGTGVAGLLAGAIPGIGQYLAAAIVGAITMHLGSNITSGKIFKFKKMRYNKGGAYVTKYYLQSVRNQ
>CP011848.1|AXB67776.1|1310237_1310420_+|regulatory-protein
MKINKLPHAELKLMKYIWGADDVLASRDIIEAMKLKYDWKKSTTLTFLKTLVDKGFLTTY
>CP011848.1|AXB67777.1|1310947_1311457_+|teicoplanin-resistance-protein
MKSRKHNITKGLFIVYIIILTWIILFKLQFDISSLETMNLRSINLVPFAGSLIINNRVDISEIILNVAIFVPFGIYVCMLKEEWSFIKKVIPIFITSLAFETLQYIFALGASDITDLIGNTLGGIIGIAVFMLLSKIFKNNTIKIINVLALIVTIIVVLFLGLVIFANL

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Crispr_ID: CP011848_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_5

1511689-1512441

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTAAGTGGTATGTAAAT	PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAAT	CRT

11 spacers

The CRISPR arrays of CP011848_5

>merge|CP011848|5|1511689-1512441|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTAAGTGGTATGGAAAGAGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAAGTTTTATATTAACTAAGTGGTATGTAAATAAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGGGTTTTATATTAACTAAGTGGTATGTAAATACGAAATTAGAGTTTGAAATATATGACTACATAATAGTTTTATATTAACTAAGTGGTATGTAAATTTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAAGTTTTATATTAACTAAGTGGTATGTAAATTTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAAGTTTTATATTAACTAAGTGGTATGTAAATAATAACTTGTCAATGTAGTTATATGCAACAACTTCTATGTTTTATATTAACTAAGTGGTATGTAAATGAATTATATATTATGAAAAAATATGGAGTCACAGAGGGTTTTATATTAACTAAGTGGTATGTAAATTTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTGGTTTTATATTAACTAAGTGGTATGTAAATTACTTTAGCACTAGTAAAGGTAGAATTATTAAAGTGTTTTATATTAACTAAGTGGTATGTAAATTCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTGGTTTTATATTAACTAAGTGGTATGTAAATAGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAAATTTTACATTAACTAAAATGTATAGAATA

>CP011848|5|2|1511689-1512375|PILER-CR
GTTTTATATTAACTAAGTGGTATGGAAAG	AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG
GTTTTATATTAACTAAGTGGTATGTAAAT	ACGAAATTAGAGTTTGAAATATATGACTACATAATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT
GTTTTATATTAACTAAGTGGTATGTAAAT	GAATTATATATTATGAAAAAATATGGAGTCACAGAGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG
GTTTTATATTAACTAAGTGGTATGTAAAT

>CP011848|5|5|1511689-1512441|CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGGAAAG	AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG
GTTTTATATTAACTAAGTGGTATGTAAAT	ACGAAATTAGAGTTTGAAATATATGACTACATAATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT
GTTTTATATTAACTAAGTGGTATGTAAAT	GAATTATATATTATGAAAAAATATGGAGTCACAGAGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG
GTTTTATATTAACTAAGTGGTATGTAAAT	AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA
ATTTTACATTAACTAAAATGTATAGAATA

>CP011848|5|2|1511689-1512375|CRT
GTTTTATATTAACTAAGTGGTATGGAAAG	AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG
GTTTTATATTAACTAAGTGGTATGTAAAT	ACGAAATTAGAGTTTGAAATATATGACTACATAATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT
GTTTTATATTAACTAAGTGGTATGTAAAT	GAATTATATATTATGAAAAAATATGGAGTCACAGAGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG
GTTTTATATTAACTAAGTGGTATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB67956.1\|1502318_1503749_-\|sigma-54-dependent-regulatory-protein	unknown	unknown	gnl\|CDD\|226350
CP011848.1\|AXB67972.1\|1520681_1521356_-\|MgtC/SapB-transporter	unknown	unknown	gnl\|CDD\|224204
CP011848.1\|AXB67959.1\|1506334_1506883_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67960.1\|1507034_1507463_+\|EamA-like-transporter-family-protein	unknown	unknown	gnl\|CDD\|377396
CP011848.1\|AXB67975.1\|1522803_1522938_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67969.1\|1518619_1519429_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
CP011848.1\|AXB67958.1\|1505279_1506215_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
CP011848.1\|AXB67967.1\|1514739_1515585_-\|signaling-protein	unknown	unknown	gnl\|CDD\|143635
CP011848.1\|AXB67961.1\|1507547_1508198_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|238952
CP011848.1\|AXB67962.1\|1508315_1509671_-\|drug/sodium-antiporter	unknown	unknown	gnl\|CDD\|240548
CP011848.1\|AXB67964.1\|1510801_1511158_+\|integrase,-catalytic-region	unknown	unknown	gnl\|CDD\|222853
CP011848.1\|AXB67970.1\|1519573_1519813_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67973.1\|1521575_1522130_-\|isochorismatase	unknown	unknown	gnl\|CDD\|238496
CP011848.1\|AXB67966.1\|1512766_1514500_-\|signaling-protein	unknown	unknown	gnl\|CDD\|143635
CP011848.1\|AXB67963.1\|1510412_1510772_-\|integrase	unknown	unknown	gnl\|CDD\|271189
CP011848.1\|AXB67971.1\|1520000_1520177_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB67968.1\|1515615_1517850_-\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP011848.1\|AXB67974.1\|1522207_1522573_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP011848.1\|AXB67955.1\|1501534_1502119_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376406
CP011848.1\|AXB67957.1\|1504064_1505009_+\|membrane-protein	unknown	unknown	gnl\|CDD\|273359

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB67956.1\|1502318_1503749_-\|sigma-54-dependent-regulatory-protein	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	2.45167e-136
CP011848.1\|AXB67972.1\|1520681_1521356_-\|MgtC/SapB-transporter	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.38574e-53
CP011848.1\|AXB67960.1\|1507034_1507463_+\|EamA-like-transporter-family-protein	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	2.2504e-17
CP011848.1\|AXB67969.1\|1518619_1519429_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.54289e-25
CP011848.1\|AXB67958.1\|1505279_1506215_-\|radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	1.21672e-179
CP011848.1\|AXB67967.1\|1514739_1515585_-\|signaling-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.16166e-29
CP011848.1\|AXB67961.1\|1507547_1508198_+\|ATP-binding-protein	gnl\|CDD\|238952	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	2.2293e-55
CP011848.1\|AXB67962.1\|1508315_1509671_-\|drug/sodium-antiporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	4.82019e-115
CP011848.1\|AXB67964.1\|1510801_1511158_+\|integrase,-catalytic-region	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.76443e-20
CP011848.1\|AXB67973.1\|1521575_1522130_-\|isochorismatase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	3.59583e-56
CP011848.1\|AXB67966.1\|1512766_1514500_-\|signaling-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.13206e-46
CP011848.1\|AXB67963.1\|1510412_1510772_-\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.0642e-06
CP011848.1\|AXB67968.1\|1515615_1517850_-\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	4.91602e-92
CP011848.1\|AXB67974.1\|1522207_1522573_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.48025e-25
CP011848.1\|AXB67955.1\|1501534_1502119_-\|hypothetical-protein	gnl\|CDD\|376406	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C.	9.21275e-20
CP011848.1\|AXB67957.1\|1504064_1505009_+\|membrane-protein	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.18415e-26

>CP011848.1|AXB67964.1|1510801_1511158_+|integrase,-catalytic-region
MVFETFDKVIKLHPNAKPVFHSDRGFQYTSKVFESKLLAQGMIQSMSRAGRCIDNAPMEGIWGILKVEMYYLRKFDTYEQLVKIIETYIYYYNNFRYQKRLNSMSPLEFRKYLSTEIA
>CP011848.1|AXB67963.1|1510412_1510772_-|integrase
MKLIDITPSILQSYINNIYNEHMLNSIKNQVDFIKSVLKESYRLKEISENICDFVTTPIKKNSSTSKFYTKQETQLLLEKSKNIPIGIPIFLILTLGLRFGEAVSLIWSDVDLDKKSHM
>CP011848.1|AXB67962.1|1508315_1509671_-|drug/sodium-antiporter
MDTKISINENMSLGKRFFKYLAPSVVAMWVFSLYTMVDGIFVSKGVGELALAAVNISMPFINFIFAVSLLFSTGASTIIAIYLGKKDIKSANEVFSFNLVSIIILSIIILAITFFNLDRLALFLGATESTIGMVKDYLGIIIFFNGFFIVSYSLEVIIKTDGFPILATVGVIISALTNIILDYLFVIEFGWGVKGAGIATVLSQVFSTIFFLIHFLRKNSTLNFSKFRIDFKTLRKIVFIGFPDSTTELSCGIVVLLFNLSLTKYIGENALIYYSVINYINTLVLMTMMGITQGMQPLTSFYYGAGNIDNVKKLLKMGIKATIIASVAVFAICMAFSGPIVSLFIHPEETMLFNEGVRVFKIFSISFLLVGINVIISGFFVSVEKPSISTVISLGRGLVIVVLSLISMILIFGGQGIWMTTIVSEFICLILSLVFLKKNFSTLDSNLNKVA
>CP011848.1|AXB67961.1|1507547_1508198_+|ATP-binding-protein
MADEKFVMSFSGGKDSILALNRMLKKGYKPVALLTTISEEHGKSWTHNLEYNMLKQVSSNIGLPLLVAECGVEGYEESFERALIKAKNMGATICAYGDIDIESHRKWDTDRCEAVGMKVDLPLWQESREDLVYEFIDSGFCSVVTKVNLKHLGEEFLGKKLTRELVEKIKNAGADPCGEHGEYHTFVVDGPIFKKPVEYEVKGTLIKDGYGYLEIK
>CP011848.1|AXB67960.1|1507034_1507463_+|EamA-like-transporter-family-protein
MTKLWAIIFALLAGGSTALEAFINGELGKSTTALVATFISLTVGAIFFLASIIVTGDLKCLVSINGFNYKLLLGGVFGGLIIYFTVKAIPNLGVSNTLILTLVSQVLVGFFIDSVILGQETMHLYKYIGVILLILGTFFIVN
>CP011848.1|AXB67959.1|1506334_1506883_-|hypothetical-protein
MYTNFNIDFNNFNKKENATKFMLMGVLLIILGLLCLTFKTLGIKLISWTFGIALLFFAYLNLKNINELKRYATKEEIKPSINIQWVLIIACILLFVFPQKIQSIFSLFLGFYLIFNQLVALVNSKNNPYSKFTTWNIVKILFGICLILSPLFLSRFIVSIMSFFIILFGLVLFFSGNTARKY
>CP011848.1|AXB67958.1|1505279_1506215_-|radical-SAM-protein
MDKFKYAFDDKRYHTWNYYLRNTFGEKVFKVSINAGFTCPNIDGSLGYGGCTYCSKEGSGDFAGNPKDNLISQFYNIKEMMLKKWPHAKYIGYFQAYTNTYAPLEVLKEKYETILELEDVIGLSISTRPDCLPDDVVEYLSELNKRTNLWVELGLQTIHDSTSKIINRGHDYKTFVEGVEKLKSKNIKVVVHIINGLPGEDYNMMMETAKAVGKMGVDGIKIHLLHVIKDTPMEKMLQNGMLTLMEQDEYINLVCDQLEILPETMIIHRLTGDGKRDELVGPIWSLKKWEILNQIDDTLKARNSYQGCKFV
>CP011848.1|AXB67957.1|1504064_1505009_+|membrane-protein
MGEKSKGYVFIAIAGLLWATLGLFGKFLMGNGLTSEQVAFTRLFFGFIVLGVYSSIRTPQILKISKKGIIYSVIIGIICQAMFNLCYFKAIDIAGVSIAAVLLYTSPLFLAIFSKVCYKENITRSKLFSLILCFIGAIMAVTGGRLDFQGLNAFGLLLGVLSAIAYALMPTISKNALKEFSSSTILVYSFLFGAIFMIPSSRPWEILNYAKDLDVLSCMLMLGIVPAALAYIFYAAGISKGVELSVAGVVASVELVGSVIIGCTILGESFSLGKLFGVMLMLISAVVALNLSYDEIRIFYKSNKLKQIEKTESI
>CP011848.1|AXB67956.1|1502318_1503749_-|sigma-54-dependent-regulatory-protein
MNLDLEFYQKILEASHDEICVSDDKGIIIYCNKAFEENYGLKKEDILGKNVSFLEDSGYSTKSPIPIVLKTKTKFSLEQDTQTGKKLIITATPIFDENGNLEFTVENCRDITELNNIKNKLEDTKKQVKKYKSEVETLYRTALRIEDTVIMDGIVMRPIINTVNHVSKTDVSVLLLGESGTGKSSLARYIHHNSNRSNGPFITINCATISPQLLESELFGYTSGAFTGASTKGKVGLVELANGGTLFLDEIGDIPQNLQAKFLQLIQDRTFTPVGSLKNKKVDIRIISATNADLVSKVKEKKFREDLYYRLNVIEIKLPPLRERRDNLVEIIKYYFNRYSSDFNLNKTISKEAMDAIANYRFPGNIRELQNIIQKILLTCTDNHITIDDLPNILTKNIHITNNGNKTHISQINKVIISDSKSTNYKNKNFDTLIKEYEKNIILDAYEKFGSSYKVAKHLEISQSKANRLIRKYTNT
>CP011848.1|AXB67955.1|1501534_1502119_-|hypothetical-protein
MLMNTHFIMAKSILDNIDENKTFFISEKNFIYGNIKPDAFSKYKLKKHYLDESFNMIVSKINYLCSLNIDSLSKYFSVSRLSQELGVICHFLCDFFCVAHSERWEFKHSLNKHVTYERELGAFAKDVDLSKIKCGTINSSFEKFFTKLYSDYKKKTDYMNDLKFSAYTCNSVINYILDSILSNTIKSYHIANCG
>CP011848.1|AXB67966.1|1512766_1514500_-|signaling-protein
MSILLKKAPKLAKHIITSFYINRDINEVLKYLCENVTWIGPGEQEFLTSFNEIKNYFYAGQDEIPSCDINNDVFETVSEDENRCMVLGRYTVRTKENAQMILEVNQRCTFEIIEDRGKLLVKHMHISNPYGEMQLDEYFPTKIGTQSYDYLQRLLKEKTEVIEMITNNINGGLKGSNDDSTYSFFYVNEGLPKILGYTYDEFMEMSGGSAVGAVYPPDLPKALEDCERCFAKGPTYSSEYRIRKKDGTLMWVLDSGMKSLNSDGIVKINSIITDITQLKNIESELKLERERYRIALQNITDIMFEYDIENDTLIKYQRVEIDKKIELENFETKNYSKLLESGKIIHLDDIGKLLEVLHGNLRETIEIRQVNSLTKNEWRWIRVQCSVIYDSDHNPIKTIGVLKDITEDKSKLESLINQAQRDPLTQLYNQRVSQNLIEEYLCSSDSKNNDALLVIDIDDFKTVNDTFGHLEGNEVLVAVSKILLHNTHDKDIVARIGGDEFTIFIKSLTKDLIIKITNDILNDASKIKVKDNHKITLSIGIAFTDDSTKLYKDLFSKADKALYLSKADGKNCYSTYE
>CP011848.1|AXB67967.1|1514739_1515585_-|signaling-protein
MFKEIFLRTFPGFLIIRDSNYRIIFINDNLKNLIKSYMQDNPLGMTNIEIAKKLPDNIAKFFTDSHNIQLDWEKNYPYDKISNWILEFKKDTTSYWNVLEYKVDVDEKTYIITMANDITKLYEENKRNLHYSITDPLTGAYNRKYLNDRFDIFIGDYIVLIDLDNFKMINDYEGHNVGDKILCDFVSLLNKELINSTSIIRLGGDEFIVIFSSDVDKNYVYSQLEALRENFLKVFSKYKYLSFSYGVDTVKRNLKLTIVELDKKMYKNKEKNKKKFDKNDY
>CP011848.1|AXB67968.1|1515615_1517850_-|signaling-protein
MQNHNYIKMLNKKVEVLSKELDSRNFKLKTLNEIDFFSKIPNREFMYQYIDDCISKNIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLHFIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESSRELKIRLPNEKEIYSNVTFSIGSTIWNGEPNMTTLILFNQVYSALKKAKSEGKNRYILFDFKDNSFYNKLENDKEFLSEISHVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELDLHLFEENCKNIRRWIDNNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIEITENILIENTNTIIQQLAELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHNLNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEFEKLLSKENNSEKMFIKYSDIGKSLIEKIFDGFFIMQDMKKLRANVTEDIQWFDFYNKTEITSFPKVIEHFEKHIKGKKFSILYKSITPHNTESDSLLISGEAVLSDEASEHQKYSNFYFSANCIISENKLLLAKLHLDLIKTAGYINEFESYSIPKMTNTHLDESNILSQFYSMLPVGIIRYDLFGDMIITYMNEEMFDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLDMIDTNKIEPFLYRFIKRDGQIVTVMYTQCNLSAIDGRSIAQGMYVDVNKIKNLTKI
>CP011848.1|AXB67969.1|1518619_1519429_+|MerR-family-transcriptional-regulator
MKDYYKIGEISKIYGIGRDSLMYYEEIGILRPVRDINGYRMYNISDIWKLNLIKEFRSLNFPMKKIKEYLDDRSIESTKNILNEELDLIDKKIAEFISHKENIIKRLSSIESVIQNTKIDEIEVVYIEKRKALELNADIKRDEDFDFLIQKLQKEYEDRFNILGNNNIGSAFSTEAINKGIFNEFKSVFCFLESNEKVYNIVFDEGYYVTLNYTGSNSNNKMYMEKVFKFIEENNYKIIADPIEIYKIDIHETGIVEEFVTEIQVPITK
>CP011848.1|AXB67970.1|1519573_1519813_+|hypothetical-protein
MKCSNCGSVNIEKGILTTGGIYAETIGLKYRGDGKLDKVINKTFPVQSTIYSDLCLDCGEIVRTYIKDNTDRNWCKDKK
>CP011848.1|AXB67971.1|1520000_1520177_-|hypothetical-protein
MFRDEMDKCTHMLTAYISSLYDYCDFIDTQLDDFILEYGENVVESCLHQVMVLVSKYN
>CP011848.1|AXB67972.1|1520681_1521356_-|MgtC/SapB-transporter
MNHHILIQFEYIARIITAGFCGALIGYERKNRLKEAGIRTHFIVALASALIIIVSKYGFNDIVGTPGIGLDPARVAAQVVSGIGFLGAGLIFIRNQSVSGLTTAAGIWATAGTGLAIGSGLYLVGIVSSIIIVIVQITLHRDRKWMKLPTAEQVSLKISNSTDSIEYIEGKFKKSNIEIINMNIKRLDGDWLEVVIYTKLPKGYKKTNLLKLFSDNPLIETLEI
>CP011848.1|AXB67973.1|1521575_1522130_-|isochorismatase
MSIALILIDIQNDYFKNGKCELFQSEETAENAKKILLFFRKNNLPVIHIQHISTDKTASFFLPNTHGSEINKIVFPLDNEEIIIKHTPDSFFETDLQSILEKKNITNLVICGMMSHMCIDTSVRTAKKLRYDITLISDACTTKNLSWNNIEINANTVHQVFMASLQNSFADVKNTDKFLSNYHK
>CP011848.1|AXB67974.1|1522207_1522573_-|transcriptional-regulator
MKIRAEYTCPLEIVHDIIKGKWKTILIFELRQSNKTFSELQHNIYGINQKMLIQQLKELRDFGIIDKISSAGYPLHVEYFLTNRGKKMLKAVEIMQEIGIEYMLEHGQQEILDNKGICYNK
>CP011848.1|AXB67975.1|1522803_1522938_+|hypothetical-protein
MNISRKAMKIIELAQKIANKRGISVEEAWSEAVTEYKNKYEHIA

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Crispr_ID: CP011848_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_6

1623060-1623353

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATATGGAATGTAAAT	PILER-CR
GTTTTATATTAACTATATGGAATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAAT	CRT

4 spacers

The CRISPR arrays of CP011848_6

>merge|CP011848|6|1623060-1623353|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTATATGGAATGTAAATCTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGTGTTTTATATTAACTATATGGAATGTAAATTTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATGGTTTTATATTAACTATATGGAATGTAAATACATATAAAACTTTCATCTTCTGTTAATTCATTAAAACGTTTTATATTAACTATATGGAATGTAAATCCATCTTTTGTTGTTTTACATAAATTTATATTACTTACGTTTTATACTAACTATACGGAATATAAAT

>CP011848|6|3|1623060-1623286|PILER-CR
GTTTTATATTAACTATATGGAATGTAAAT	CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT
GTTTTATATTAACTATATGGAATGTAAAT	TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG
GTTTTATATTAACTATATGGAATGTAAAT	ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC
GTTTTATATTAACTATATGGAATGTAAAT

>CP011848|6|6|1623060-1623353|CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAAT	CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT
GTTTTATATTAACTATATGGAATGTAAAT	TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG
GTTTTATATTAACTATATGGAATGTAAAT	ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC
GTTTTATATTAACTATATGGAATGTAAAT	CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC
GTTTTATACTAACTATACGGAATATAAAT

>CP011848|6|3|1623060-1623353|CRT
GTTTTATATTAACTATATGGAATGTAAAT	CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT
GTTTTATATTAACTATATGGAATGTAAAT	TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG
GTTTTATATTAACTATATGGAATGTAAAT	ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC
GTTTTATATTAACTATATGGAATGTAAAT	CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC
GTTTTATACTAACTATACGGAATATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB68057.1\|1612948_1613518_+\|lipoprotein	unknown	unknown	unknown
CP011848.1\|AXB68069.1\|1627662_1628103_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|225064
CP011848.1\|AXB68071.1\|1629719_1630928_+\|tyrosyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|237360
CP011848.1\|AXB68064.1\|1620305_1622399_+\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP011848.1\|AXB68056.1\|1612044_1612944_+\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|274004
CP011848.1\|AXB68062.1\|1617927_1618755_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP011848.1\|AXB68059.1\|1614721_1615636_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378573
CP011848.1\|AXB68073.1\|1632285_1633200_+\|transporter	unknown	unknown	gnl\|CDD\|223769
CP011848.1\|AXB68070.1\|1628275_1629244_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68063.1\|1618729_1619626_-\|NADP-oxidoreductase,-coenzyme-F420-dependent	unknown	unknown	gnl\|CDD\|378484
CP011848.1\|AXB68055.1\|1611307_1611892_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239264
CP011848.1\|AXB68067.1\|1624962_1627083_-\|ferrous-ion-transport-protein	unknown	unknown	gnl\|CDD\|223447
CP011848.1\|AXB68058.1\|1613684_1614332_-\|lactate-utilization-protein-B/C	unknown	unknown	gnl\|CDD\|376839
CP011848.1\|AXB68074.1\|1633422_1633968_+\|ruberythrin	unknown	unknown	gnl\|CDD\|153105
CP011848.1\|AXB68068.1\|1627108_1627336_-\|ferrous-ion-transport-protein	unknown	unknown	gnl\|CDD\|377199
CP011848.1\|AXB68066.1\|1624011_1624830_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133409
CP011848.1\|AXB68060.1\|1616467_1616650_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68061.1\|1617060_1617909_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
CP011848.1\|AXB68072.1\|1630988_1631870_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
CP011848.1\|AXB68065.1\|1623520_1623805_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB68069.1\|1627662_1628103_-\|acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	2.32711e-35
CP011848.1\|AXB68071.1\|1629719_1630928_+\|tyrosyl-tRNA-synthetase	gnl\|CDD\|237360	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.	0
CP011848.1\|AXB68064.1\|1620305_1622399_+\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.15693e-88
CP011848.1\|AXB68056.1\|1612044_1612944_+\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|274004	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.	4.65503e-25
CP011848.1\|AXB68067.1\|1624962_1627083_-\|ferrous-ion-transport-protein	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	4.06427e-151
CP011848.1\|AXB68059.1\|1614721_1615636_-\|hypothetical-protein	gnl\|CDD\|378573	pfam11155, DUF2935, Domain of unknown function (DUF2935). This family of proteins with unknown function appears to be restricted to Firmicutes. The structure of this protein has been solved and each domain is composed of four alpha helices. A metal cluster composed of iron and magnesium lies between the two domains.	2.48442e-33
CP011848.1\|AXB68063.1\|1618729_1619626_-\|NADP-oxidoreductase,-coenzyme-F420-dependent	gnl\|CDD\|378484	pfam10728, DUF2520, Domain of unknown function (DUF2520). This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases.	8.0715e-41
CP011848.1\|AXB68055.1\|1611307_1611892_+\|thioredoxin	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.01147e-17
CP011848.1\|AXB68062.1\|1617927_1618755_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	4.61346e-170
CP011848.1\|AXB68058.1\|1613684_1614332_-\|lactate-utilization-protein-B/C	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	1.36486e-54
CP011848.1\|AXB68074.1\|1633422_1633968_+\|ruberythrin	gnl\|CDD\|153105	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.	1.43332e-53
CP011848.1\|AXB68068.1\|1627108_1627336_-\|ferrous-ion-transport-protein	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	1.57039e-13
CP011848.1\|AXB68066.1\|1624011_1624830_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133409	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	3.3683e-41
CP011848.1\|AXB68073.1\|1632285_1633200_+\|transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	5.07348e-11
CP011848.1\|AXB68061.1\|1617060_1617909_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	3.35749e-163
CP011848.1\|AXB68072.1\|1630988_1631870_-\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	2.44261e-75

>CP011848.1|AXB68064.1|1620305_1622399_+|signaling-protein
MNKRNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEQNSTCSFCKVLELLKNDKKGVLIKWYEKCNKLNRVFENYDSLITWQDGTVVHMHQSIDIANSTILNKPIKINEFNEISNTKEGKGVFNFSRDNFDYNSTLLYDALIRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVENPLIYWKKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSGEYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMIEKLCIVLLNIDDFKNVNEMYDRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNVEENEILTLYNQIQNMIIHLQLWRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTQSHKIIGVEVLLRWTNDKCKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDYYPFFKVSVNVSAVQILEDTFIEDIVKIIDDENFPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN
>CP011848.1|AXB68063.1|1618729_1619626_-|NADP-oxidoreductase,-coenzyme-F420-dependent
MANYFLSKGYCVSGFYGRNQLSLLESINLTKTKIYSNLRDIIYENDILFITTSDDSIEIIDKKLSKFNLKHKYICHTSGSLKSSILFCSKKAGALIYSIHPIFAFSNKNTNIKKMKDICFSIEGDNEQDDLVIQNFIDGLGNQFFIRDKDTSSTYHLANVLVSNLVLSLLDIGVSYFIKLGLSEEESLKAISPLVKKNIENILDNGFTKALTGPVSRGDITPIRKHLSVLNKKDEDIYKILSLNLLKIIALGNDNSLKGTKNITIENAIENLISKSEKYKEIYKLLGGKNDEKYHTDF
>CP011848.1|AXB68062.1|1617927_1618755_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKNTIQTFKNAKYEGKKLSMLTAYDYSIAKIMDECDINGILIGDSLGMVIKGEENTLSVTIDEIIYHTKAVKNGAKNALIVSDMPFLSYHVSIEDAVKNAGRLIKEGGAHAVKLEGGSNVIKQIESIVNAQIPVMGHLGLTPQSVNSFGGFKVQGNTSETARQLIEDAKLIEKAGAFSIVLEGVPTKIADMVTNSISIPTIGIGAGINCDGQILVYQDMLGVFGDFVPKFVKQYANIGDIMKDSIKNYILEVNTGAFPQEKHSFSINESELEKLY
>CP011848.1|AXB68061.1|1617060_1617909_-|pantoate--beta-alanine-ligase
MLVKEIKLLRNIIKDWRKHGYSIGLVTTMGFLHEGHQSLIKKAVKENDKVVVSVFVNPTQFGPNEDFNSYPRDIDKDFKYCMDSGATVVFNPSPEEMYLKGNCTTINVSGLTDFLCGAKRPVHFGGVCLVVSKFLNIVTPDKAYFGEKDAQQLAVIKRMVKDLNINTEIIGCPIIRENDGLAKSSRNTYLSEEERKSALILNKSLSLAKEELVKGNLNPKNIKELITAKINSEHLAKIDYVEIVDSETLQPVKQIEHSILVAIAVFIGKTRLIDNFTFELNI
>CP011848.1|AXB68060.1|1616467_1616650_-|hypothetical-protein
MFKDKIDECVHIMTAYIASLKEYYSFIETQIGDFIKKYGEDVVELCLHRVMILLCECGLA
>CP011848.1|AXB68059.1|1614721_1615636_-|hypothetical-protein
MIDNQKYVILSLELHLFFSRIMKEHALFLEAGFTNKNYNLAMEADHYKKQFEDLLSYTVSASNGIIRPDILYSEELVTTLTSVAEQKTEEFTGIEINKDITTRELNLQSGVNPQVGQDLVNYVAQLNSDAIRLLDGLINFKERVLDGVLSCTIFTSNYPLLLEHIIHEANLYRSYVVDLENKIDIESKNAKEIELFWDHIMMEHALFMRGLLDPSEGELINTSNDFAIKFNELIEKTNEMTDSNIKNITEETLNETVEFKDFKEAGASGIEQCKIKSIILPLLADHVLREANHYIRILESYKNM
>CP011848.1|AXB68058.1|1613684_1614332_-|lactate-utilization-protein-B/C
MIRQTPLEKRYDKLGPHIVTAFKKRYFDAYYCKTRNEALQQILDLIPQNHVVSWGGSETLKEMGVQTAVREKGFKVIDRDLAKTPEERTEIMRQALLCDTFLMSSNAISEDGQLFNIDGNGNRVAAMIFGPKNVIVVAGMNKIVKNIDDAIQRTRTIASPAVVQRFQDVNTPCYINGSCIDCTSPESICAYMVTTRISRPAKKIKVILVGENLGL
>CP011848.1|AXB68057.1|1612948_1613518_+|lipoprotein
MKKFILCIIMFAISVLVLAGCTNDNKIKNEVDSMFNSIKTQDADTVDKYFPKSGLGNLIYEDKEGFKMYSKNMTWEISDIKNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKDIDSAKKKEFNITLELVKSGDNYVCKVNQESAMKLLNVITGGGIDYLADYNKDYYKQLDEEQKNYENKNS
>CP011848.1|AXB68056.1|1612044_1612944_+|iron-sulfur-cluster-binding-protein
MKLLSKVNNNIRLIIQVAFTALTNGYVNGFLEGTIYGGESKKLCVPGLNCYSCPGALGACPIGSLQAVLSSREYKFSFYVVGFLMAFGAFFGRFVCGWLCPFGLVQDLLHKVPFPVKIKKVYGDKYLKYLKYIVLIMFVIILPVAIVNVAGGGNPWFCKWICPSGTLLGGIPLILGNENLRESIGFLFSWKLSILLLILLMSIITYRPFCKYICPLGAIYGFFNPISIYRFKIDKDKCTNCTACQTKCKLDIPIYKDVNSPDCIRCGECIKVCPQNAITTTFSKDKKENNICAKKYRGI
>CP011848.1|AXB68055.1|1611307_1611892_+|thioredoxin
MKKFFMVVLGCIFVLGVISGCSKKESKPVEKNKSNSEWFSNLDTEDVDGNKVTKEIFSNKELTLINVWTTWCGPCVGEMPELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKNLVKNIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVDKKGNFVGEKVVGANSKEEWKKIIDERLKMVKANE
>CP011848.1|AXB68065.1|1623520_1623805_-|hypothetical-protein
MLVRVKIVIGATIRYLIKHKVNYCNKKSLDKLELKYGNIDREKAVKLEIFYQYLIELEYIEMSLLIRRLDTAITSLALVSIITIASYYLIRKNV
>CP011848.1|AXB68066.1|1624011_1624830_+|MerR-family-transcriptional-regulator
MEKQYFTTGEFAKLCGISKQTLIFYDKIGIFSPEYKDKNNYRYYSVYQYDTLDILQSLREIGMSLEEIKEYIQNRTPQLCVKMLKEEEKKIREKIKKLRKISSKMQNRINITVEGISKMNSEEIYISKKFEEYLVLSSDLSNMSNSDFMMELIDFTNYCKSKNLYQGYELGVIVSNENIKNGDYLSISSFYLKIDKKIKDKKLYVKPEGMYACIKHIGKYEDSYKSYEKLKKYIYENEYKIIGNSYEESILDFFCESNEDNYMTEISIQVSR
>CP011848.1|AXB68067.1|1624962_1627083_-|ferrous-ion-transport-protein
MGLTHNSTKMSSLKDMFDIDNKEDQFVIALAGNPNTGKSTVFNHLTGLRQHTGNWPGKTVATARGNFKYKNTEYALIDLPGTYSLFALSQEEIVARDFICFGNPDAVIVVCDATCLERNLNLVFQVMELTDKVILCINLIDEARKKGITIDKKLLEDSLGIPVILTAARNGSGMDELLDTLNDVSFDKYKLNNKPVRYNENIENVVKSIQPELDNIIPGINSRWLGLRLIDGDESIFESMSNYIDKDSIDAINEVKKKIPDNINKQKIRDEFTKINYDYAKKLSDECCSNVAKKSTDREEKVDKILTSKIFGLPIMLLLLGTILWITIEGANYPSTLLSNLLLGFEPSISGILNSINCPSWLNDMLVLGLYRTLAWVISVMLPPMAIFFPLFTLLEDFGYLPRVAFNLDHLFKKACAHGKQCLTMCMGFGCNAAGVIGCRIIDSPRERLIAILTNNFVPCNGRFPTLIAISTIFFSSVITNSFVSSVATALCITLLIILGVIITLLVSYTLSKTLLKGVPSTFTLELPPYRVPQIGRTLYTSIIDRTIFVLGRAVMVAIPAGVITWIFANIYIGDLSILSHVANFLDPLAKLIGLDGFILLAFILGFPANEIVVPILLMAYLATGSMIELDSFSALGQVLREHGWTYLTALNVMLFSLLHWPCATTLLTIKKETGSLKWTALGFLMPTILAFVVCFLTTTVYNLFI
>CP011848.1|AXB68068.1|1627108_1627336_-|ferrous-ion-transport-protein
MKNLNDIQVKKTVKVEDILSSGNLRERMLALGLTRGAVIDVVRKGPKNNLTVYKIRGSKIALRQEESSLILVSDI
>CP011848.1|AXB68069.1|1627662_1628103_-|acetyltransferase
MFKIKHFNDLSLDEFYEIAKSRYEVFACEQKIFSLNDYDDIDKSSYHIFLKENGLICAYARIIPKEYSSYNDVSIGRVLVLSSHRRKGLAKQMMDCAIDFIKINLHENNITLSAQTYIKNLYLSCGFKEISEVYDEAGIEHIKMRL
>CP011848.1|AXB68070.1|1628275_1629244_+|hypothetical-protein
MNTTKKLTEAALLSSLFIVVTIIAVSTGFGYAIYLDFIVPVFFCIICLKCDLKYTILSGITSLLIISLVLGNLGTAIWASQSVLLGIMCGYLINKPTMVMDDLVYGSVFGVIVMVFIDIYASTLIGYSFMKEFQGYSKWIYFNGYTNFIYYLMIALFPFGMVFCIYLLSLILGNKLHILDSNSLKKFLIFKNFRSLNQFLCCSKKAFYICVSYLAIFEVLKLLNVKVDSVYLKTIFISITYISVYFIIRDSCMSLQNFIIAKFRKLLYARILFLIIILLLFFIFDVTVISLIIINAFLNKKINIRLSQSNIVNKQINLLIEK
>CP011848.1|AXB68071.1|1629719_1630928_+|tyrosyl-tRNA-synthetase
MKSIDEQMRIIMKGVDDLIDEKELREKLIKSEKEGKPMIVKLGLDPSAPDIHLGHTVVLRKMKQLQDLGHQIVIIIGDFTGKIGDPTGKSKARKALTTEQVLANAKTYEEQIFKVLDKEKTIVRFNSEWLAKLNFEDVIKLAATITVARMLEREDFKKRYEGQMPISVHEFFYPLMQAYDSIALEADIELGGTDQRFNLLMGRSLQREFGMESQIVIMMPLIEGLDGKEKMSKSLGNYIGIDEEAGIMYQKSMEIPDELIIKYYNLVTDVHPDEVNKIESQLKEGSVNPRDIKMNLAREIVTLYHGEESAKEAEERFKSVFQKGQIPEDIQTIQVKEDGFDLIEVLVSNEIVKSKSEVRRLASQGGVKVNGEKVEDLSTIVKESELVVQIGKKKFVKIELVK
>CP011848.1|AXB68072.1|1630988_1631870_-|polysaccharide-deacetylase
MVKKRKKKTVTLTILVVIVIGIFSMAWADMSRKKEMKETQERLKAERLEKERIEKEKNEPIIGAKKEAVKEYGYDAKIVWDKLNKYDYSNNGEKIVFLTFDDGPSTTNTPQVLDILKRHGVRGTFFIKGDSLERKGANEILKRTFDEGNAIAHHSYTHDYKKLYPGRSLNLDTFVNELNKTDEAMKKVLGKNFSSNVVRCPGGYMSWKNMEPLGNYLKEKNMASIDWNALNADAEGKKKNAQELFEHAKKSSEGKEMVVLLMHDTYGKQETVNALDQIITYFKDNGYQFKILI
>CP011848.1|AXB68073.1|1632285_1633200_+|transporter
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRANMGKKLLKAGGILGIFLFLAFTVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDKIGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAFHIFFTSEFAKDNNPMALTAIQFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAIILSTEAVFGTIFSIIILKELITAKLIIGSILIFVAIITAETKLSFLKSKKVKLKDSEESSLESI
>CP011848.1|AXB68074.1|1633422_1633968_+|ruberythrin
MKKFVCTVCGYIHEGDAAPAQCPVCKVGADKFEEMKGEMVWADEHRIGVAQGVDAEIIEGLRANFTGECTEVGMYLAMSRQADREGYPEVAEAYKRIAFEEAEHAAKFAELLGEVVVADTKENLRVRVDAEYGATDGKLKLAKRAKELGLDAIHDTVHEMCKDEARHGKAFLGLLNRHFGK

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Click the colored protein region to show detailed information

Crispr_ID: CP011848_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_7

1715737-1716093

Orphan

I-A

Consensus_repeat	Method
GTTTTAGATTAACTATATGGAATGTAAAT	PILER-CR
GTTTTAGATTAACTATATGGAATGTAAAT	CRISPRCasFinder
GTTTTAGATTAACTATATGGAATGTAAAT	CRT

5 spacers

The CRISPR arrays of CP011848_7

>merge|CP011848|7|1715737-1716093|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGATTAACTATATGGAATGTAAATGTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCTGTTTTAGATTAACTATATGGAATGTAAATTTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTCGTTTTAGATTAACTATATGGAATGTAAATAGTACATATAATGAGTCTTTAACATCAGTTATGAAAGGTTTTAGATTAACTATATGGAATGTAAATGATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATCGTTTTAGATTAACTATATGGAATGTAAATTATTTTACAGATGAACAATTACAGTTACTTCTTGAATGTTTTATATTAACTATGTGGATTCAAAAT

>CP011848|7|4|1715737-1716027|PILER-CR
GTTTTAGATTAACTATATGGAATGTAAAT	GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT
GTTTTAGATTAACTATATGGAATGTAAAT	TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC
GTTTTAGATTAACTATATGGAATGTAAAT	AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG
GTTTTAGATTAACTATATGGAATGTAAAT	GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC
GTTTTAGATTAACTATATGGAATGTAAAT

>CP011848|7|7|1715737-1716093|CRISPRCasFinder
GTTTTAGATTAACTATATGGAATGTAAAT	GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT
GTTTTAGATTAACTATATGGAATGTAAAT	TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC
GTTTTAGATTAACTATATGGAATGTAAAT	AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG
GTTTTAGATTAACTATATGGAATGTAAAT	GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC
GTTTTAGATTAACTATATGGAATGTAAAT	TATTTTACAGATGAACAATTACAGTTACTTCTTGAAT
GTTTTATATTAACTATGTGGATTCAAAAT

>CP011848|7|4|1715737-1716093|CRT
GTTTTAGATTAACTATATGGAATGTAAAT	GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT
GTTTTAGATTAACTATATGGAATGTAAAT	TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC
GTTTTAGATTAACTATATGGAATGTAAAT	AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG
GTTTTAGATTAACTATATGGAATGTAAAT	GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC
GTTTTAGATTAACTATATGGAATGTAAAT	TATTTTACAGATGAACAATTACAGTTACTTCTTGAAT
GTTTTATATTAACTATGTGGATTCAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB68153.1\|1708788_1709136_+\|phage-protein	unknown	unknown	unknown
CP011848.1\|AXB68163.1\|1716638_1717505_+\|prophage-antirepressor-related-protein	unknown	unknown	gnl\|CDD\|214989
CP011848.1\|AXB68161.1\|1714052_1714493_+\|phage-protein	unknown	unknown	gnl\|CDD\|378084
CP011848.1\|AXB68158.1\|1711297_1712608_+\|phage-protein	unknown	unknown	gnl\|CDD\|377435
CP011848.1\|AXB68156.1\|1710690_1711128_+\|phage-protein	unknown	unknown	unknown
CP011848.1\|AXB68171.1\|1725109_1725529_+\|phage-protein	unknown	unknown	gnl\|CDD\|378510
CP011848.1\|AXB68164.1\|1717557_1717692_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68172.1\|1725529_1726579_+\|phage-protein	unknown	unknown	gnl\|CDD\|377414
CP011848.1\|AXB68168.1\|1722256_1722946_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|236880
CP011848.1\|AXB68167.1\|1719867_1722240_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
CP011848.1\|AXB68154.1\|1709135_1709426_+\|phage-protein	unknown	unknown	gnl\|CDD\|377415
CP011848.1\|AXB68157.1\|1711120_1711297_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68169.1\|1722938_1724831_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|366353
CP011848.1\|AXB68162.1\|1715341_1715446_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68159.1\|1712624_1713095_+\|phage-protein	unknown	unknown	gnl\|CDD\|378178
CP011848.1\|AXB68166.1\|1719034_1719802_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373083
CP011848.1\|AXB68155.1\|1709535_1710342_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68165.1\|1718369_1718897_+\|Telomeric-repeat-binding-factor-2	unknown	unknown	gnl\|CDD\|378684
CP011848.1\|AXB68170.1\|1724844_1725105_+\|phage-protein	unknown	unknown	gnl\|CDD\|378501
CP011848.1\|AXB68160.1\|1713153_1713981_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB68163.1\|1716638_1717505_+\|prophage-antirepressor-related-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.45371e-10
CP011848.1\|AXB68161.1\|1714052_1714493_+\|phage-protein	gnl\|CDD\|378084	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC. This is a family of phage tail assembly chaperone proteins, TACs, from Gram-positive bacteriophages, in particular PBSX from Firmicutes.	8.20802e-57
CP011848.1\|AXB68158.1\|1711297_1712608_+\|phage-protein	gnl\|CDD\|377435	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain. This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	2.06012e-36
CP011848.1\|AXB68170.1\|1724844_1725105_+\|phage-protein	gnl\|CDD\|378501	pfam10844, DUF2577, Protein of unknown function (DUF2577). This family of proteins has no known function.	4.03103e-19
CP011848.1\|AXB68171.1\|1725109_1725529_+\|phage-protein	gnl\|CDD\|378510	pfam10934, DUF2634, Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function.	9.64514e-34
CP011848.1\|AXB68168.1\|1722256_1722946_+\|phage-cell-wall-hydrolase	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	3.33831e-11
CP011848.1\|AXB68167.1\|1719867_1722240_+\|phage-tail-tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	6.69895e-19
CP011848.1\|AXB68154.1\|1709135_1709426_+\|phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	1.77732e-13
CP011848.1\|AXB68169.1\|1722938_1724831_+\|phage-cell-wall-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.81119e-27
CP011848.1\|AXB68172.1\|1725529_1726579_+\|phage-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	9.53327e-51
CP011848.1\|AXB68159.1\|1712624_1713095_+\|phage-protein	gnl\|CDD\|378178	pfam09393, DUF2001, Phage tail tube protein. This is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein whose structure adopts a beta barrel flanked with alpha helical regions.	6.78448e-58
CP011848.1\|AXB68166.1\|1719034_1719802_+\|hypothetical-protein	gnl\|CDD\|373083	pfam14471, DUF4428, Domain of unknown function (DUF4428). This putative zinc finger domain is found in uncharacterized bacterial proteins.	3.64056e-09
CP011848.1\|AXB68165.1\|1718369_1718897_+\|Telomeric-repeat-binding-factor-2	gnl\|CDD\|378684	pfam11611, DUF4352, Domain of unknown function (DUF4352). Members of these family are putative lipoproteins that fall into the Antigen MPT63/MPB63 (immunoprotective extracellular protein) superfamily.	2.90312e-17

>CP011848.1|AXB68162.1|1715341_1715446_+|hypothetical-protein
MIGFLLSILAGVISAYIYDKIKNHPDANKGDLKK
>CP011848.1|AXB68161.1|1714052_1714493_+|phage-protein
MSNLSAFLSQNAIKVDNVKYVASNRFLDKEGKPVEWELKVLSSEEDEALRRKCTKRVKVIGNNGKHTGQYTSEIDYNSYVAELCVASTVFPDLKDAELQNSYGVMGEAQLLKTMLTAGEYVNYTVKVNEVNGFDTSFEDKVEEAKN
>CP011848.1|AXB68160.1|1713153_1713981_+|hypothetical-protein
MEFESGIKLGKLTLIKYLGRNKHSKKVWLCQCECGNKVERVENNLKQSIKNEKPPHCGCSPNWKGQNKRFKDITGKTFGKLTVLKMSGKDKYSHNLWLCQCECGNRTITSTSALEQGKAQSCGCIRKEILLERSTTHNKSNDSLYRVYHRMIKRCTNKSNKDYNYYGGRGIEVCNEWLEDFINFYNWSIENGYRKGLTIDRINVNGNYEPSNCRWVTWEVQRNNKRNSIRVNYKGEMITLKQCAENLNVKYLFLYNQLVTKKIPLEEVIKNIGME
>CP011848.1|AXB68159.1|1712624_1713095_+|phage-protein
MAQTINAKDTVSAKKAECFITIEGKRYNFMQAIDLEAKMEKNKSEVPILGRTTKGNKTTGSTNTGSATFHYNTSIFRELLYRYKETGEDIYFDIQVTNEDPTSAVGRQTVVLKDCNMDSGIITKFDADGEYLDEDMDFTFEDWELVESFALLNGML
>CP011848.1|AXB68158.1|1711297_1712608_+|phage-protein
MALGGGTFVTQNKILPGAYINFISAKRATSSLSDRGIVAMPLELDWGIDEEAFQVTSDDFEKYSVKYFGYDYTHEKLKGLRDLFKNIRLGYFYKLNKGVKASCTIATAKYSGIRGNDLKVTVTTNIDDNAKFDVVILLDNKKVDTQIAKVITDLQDNDYITWKKDATLEASAGLVFTGGTNGEAVTGAEYQAFLDKIESYSFNALGCLATTTEIKSLFVEFTKRMRDKVGAKFQTVLYKKSDADYEGVVSIENKIKDKDLVESSLIYWATGAIAGCDINKSNTNKKYDGEFDVDVNYTQIQLEEALKTGKFIFHKVGDEVHVLEDINTFVSFTDDKNDDFSSNQSVRVLDQIANDIATLFNEKYLGKVPNDKAGRISFWNDVVKHHKELENIRAIEDFKTDDVSVELGNDKKTVIVSDAIKVINAMSKLYMTVSVN
>CP011848.1|AXB68157.1|1711120_1711297_+|hypothetical-protein
MSKALSKEDNYKFTKEQIVNSKKYVNRKDLLNAILKENELYSFSEVEDRINKFMKGVS
>CP011848.1|AXB68156.1|1710690_1711128_+|phage-protein
MLNNIIDGISVKLDKSFGEKYTIYSEDVEQGINEPCFFIVPLNPSKTPYPSGRELKKNSFDVHYFPRSEDKNFEINEIAEMLLEELEYIEIDGDLVRGTNMNFEIIDNVLHFFVDYNYFTIKNNDTNKMDTVELFGGLKRGDNFE
>CP011848.1|AXB68155.1|1709535_1710342_+|hypothetical-protein
MAKFLDITGKKFGRLRVIKFSKEIKSGKRNRKYWLCKCDCGNFKEIRTDSLTSGLVQSCGCLKKEQDKLNLTDKYQFKKKYKVQNKRLYSIWKGIISRCTDKNNKRYNRYGERNIIVCDEWFCYDNFANWALSNGYSEKLTIDRINNEGNYESSNCRWVDIKTQCRNRSTNILVKHEEKEITLIELSEKTGISYSCLRSRYSKGLVGNKLIEKVKIIEESRAKLSIEDVKEIRKKYSDGYTIKQLSEIYPVTYSSISNIVHRRTWKNI
>CP011848.1|AXB68154.1|1709135_1709426_+|phage-protein
MARWGSVDFREFKRVCKKMEKFTKIDLDKFCKDAARELAARLLGKVIRRTPVDTGFLREGWSGVAYARSLPVYKQGNNYIIEVVNPTEYALTQWGI
>CP011848.1|AXB68153.1|1708788_1709136_+|phage-protein
MVSKTRKAIEMLYRDKCTIVEYQPIKDPVTKRTNNKEVIVLENQPCKLSYKNIVSATEGKLAKLEQTIKLFISPDIEIKAGSKLIINDKEYVRSGESAIYPNHQEIILELFKDKA
>CP011848.1|AXB68163.1|1716638_1717505_+|prophage-antirepressor-related-protein
MKNLIVKEFNGSQIYTFMWKEKSCWIANQIVGLFDYADVSKTIQDCIKAEDFEIEQEYDVLKGNEFNDFVTTLNVVANNIISNKARSITIFYEDGLYGFLQYTDKPIGVQFRKWLRREVLPSIRQTGAYITNNANPEKLREKASEIEKLQLAYNSTSMLKELLDGAGFDNKSKLLTAKTLYKKAGIDLPIEINEEEHYFDTKQIASKLKIYSKSNKPAQLAVCEIIKKIDLEENEVKGVWETNGSWTGTVNKYTKSVIDKVRNWIEENNRPTKIAGEKKNYHVVYKIE
>CP011848.1|AXB68164.1|1717557_1717692_+|hypothetical-protein
MHENLLDSIDIEKRKEEFRIKLLKIRETDIDIYNKIESIVYKLS
>CP011848.1|AXB68165.1|1718369_1718897_+|Telomeric-repeat-binding-factor-2
MREGKRRRGCLFWFILIILFSGVVGAIAGNSTNNESTEKQKEDLTKYIGEEGSIGDLKLTVNSISKASEISVASGYLAYTPDSGKYGIINLTIKNQTKESQSFMLNSFTLIGPDDSKYVPSLLIDVGNKYITMDTVNPNLDVTGNIAFEIPKDLLVSDCKLKYSGSEQEFILKEK
>CP011848.1|AXB68166.1|1719034_1719802_+|hypothetical-protein
MGLFGKKKADICCICNTEIGVLNIEDGWICNSCFKEYCDALSMTKAPKILRKLDIEKTISSTKKNNELQKIFNTTNNIENYIEFDEDNKKWLVSKKSINDKKTPIIHSYEDIVKFELLENGETVTKGGIGRALAGGILFGEAGAIVGGITGKKTTRKVVDTFKIKITINNIDNPIEYIELINKKTKTNSSAYEKAYKDAHKILSTLSAITQSIKETDNINTKSVADEILKYKNLLDMEAITQDEFNTKKKELLNL
>CP011848.1|AXB68167.1|1719867_1722240_+|phage-tail-tape-measure-protein
MATIQTSIKIFDGMTPAFRNMTTSINTTINSLERLQQRLHNPLNTGGIQASQQSLNNIENILTRIEQKIGRNTNEQENFNNKIKQGSEAGSLLVSKLKSLAGIYIGIRGIESITKAADTIASTKARLNLMNDGLQTTEQLNKMIYLSAQSARASYADTAAQVAKLGILAGDAFGSSAEVIKFTELMNKAFVIGGTSANEASAAMYQLTQAMGAGKLQGDEFRSIMENAPLLATKIADAMGKTKDQLKELSSSGAITADVIRNALFKASDEIEKKFASMPVTFSQALTMMKNDAYMIFGQTLGKISGALQSVRFSEIVVSIRNVMIAISSNIYDTLNIIKNILNSEFFSNLVQGFTFCAVVITKSLGSIVNTALNIVNIFAQNWSIIKPIVFGVASVFILFRGVLLATKIATIGNVIANVAHAASSSLSALMTNIQAAALMRSNGATLSATIATWGLNAALLACPITWVVLGILAFVVVVFVAVAAVNKFAGTSLTALGVIVGAVFAAVAAIQNVMIWLLNGCIAVNEGITNGWNQCVYLMKQAIAKGVIFIIEKMASLNNSVNNAGNALGKAFIDGANIAIRGVNKLIDLINKIPGINIGKVGEATFTPVKADNSYIKQQIDSLNRWVGDAPEKVKLERMGYKDIGAAFQKGNALGTKWQNAITDKFKDTFDINKMLEDAKKKLGLDDLWNKQNPLNNLGGFGGDLGKNVKDTAGNTAKMAKTMDKSQEDLKYLRDIAEQETINRFTGVNIKIDMNNTNNISKDTDVDGIVNVLTEKLNDAMVVSAEGIV
>CP011848.1|AXB68168.1|1722256_1722946_+|phage-cell-wall-hydrolase
MAYDFYLDGVQLPIAPPKLEVKVTNKNKTVDLINTGEVNILKKEGLSEISFEAEFTHNKLPFCRGQFRDVQFFLSKLELLKTDCKPFQFIVSRELGNKVLFNTNIKVSLEEYAISEDADNGSDTKVAIKLKQYRDYSTKKLVLAPPKNETGRPNVKIEPKRVDSVNATNTKTYTVKAGDSLWSICQKQLGNGSLYKKVYELNKSMMDKANKGKNLSKYTIYKGQVLKLG
>CP011848.1|AXB68169.1|1722938_1724831_+|phage-cell-wall-hydrolase
MVDELVLANDRDVRLVIAHWEDFYEPAVIDGITWEIERRGTPSKLEFTIVMDDILEFCEGNSVRLYYKGIGIFYGYIFQKKRDKENHIKIVAYDQLRYFKNKDTYVYSNKTASELVKILAKDFNLKYNVIEDTKYKISRVEENKTLFDMILTALDDTLREKKEMYTLYDDFGRITLKNVASMKLDTVMNNDVIEDFDYNSSIDSDTYTKIKLVRDNEESGKRDVYIAQDSAHMRSWGILQMFDTVDKNMSEAEIKQKCDILLKLYNKKTKSLSLKNALGDIRVRAGCLVPVFLNLGDIELQNYMLVEKVKHTFENNSHFMDLTLVDGDEFASYSSSSYSSGNTNNKDEKKNGPAQSIMKKNTGKKVPAIFTAYYPGNNAMEGGKTDCNGKPLDVKSRTVAGPMNREGVKKTWYTDDFLNKHPVFEYGDKVKIILPGTAYDNKVYTVKDNGGRIYVETNGTYHIDILLANASECKKFGRKNGYIIIGGDEEQTYQVEGNNQSNTNNNSKEDKLISIAKSKLGCNYVYGAEGPNNFDCSGFTQWCYKQIGIKIPRTASAQSKAGKAVDLKDRSKWKAGDLLCRIGGGSSNHVVMYIGNNQIIHSPQTGDVVKIESVNSYRKGKAYTHVRRFI
>CP011848.1|AXB68170.1|1724844_1725105_+|phage-protein
MSQDLLQIIKKAAMDAVETSNPMRVVFGTIESISPLRVKIEQKLSIGEIFLIQTDTFKRYTDKKMGDKLVLIRMQGGQQYLILDRM
>CP011848.1|AXB68171.1|1725109_1725529_+|phage-protein
MLPSDNLDYDIEDVSIINFDVRQEPSKTFKLHIEKSKIDGICDDVEALKQTIFLILNTERYEHLIYSRNYGVELNDLIGEPISYVIPELERRITEALIQDDRIENIDNFEFQNIKGKVQCRFSVHTKYGNIKAEKVVSV
>CP011848.1|AXB68172.1|1725529_1726579_+|phage-protein
MFELMTFENIIKRMLDSVPDTFDKREGSIIYNALAPVAIELTETYIAMDELLDQTFVDTASYYYLEKRCKERGITPLEATHTIAKGVFNIDIPLDSRFNLGEYNYVAIERISEKTYKMKCETTGPVFELGKLIPIEYIDGLETAELTEILINGEDEESEDSLRQRYYDSLNSQSFGGNIQNYRDEVNKIQDVGGVKVYPTWDGGGTVKLVIINSNFKVPSEELVNLVQEEIDPIGHQGEGLGLAPIGHRVTVEGVTSTTINISAEITYKNGYTWENIKSIAEEAIDDYLNELNMSWEDEENLIVRISQIETRLLSIDGVLDIANTMINDVKSNLTIDSNSIVVRGEVVG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP011848_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_8

1717958-1718248

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATATGGAATGTAAATC	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP011848_8

>merge|CP011848|8|1717958-1718248|CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAATCTTTGTAATGGTAGTGTATTTAAGATTGAAACATCAAGTTTTATATTAACTATATGGAATGTAAATCAACATTAGTAGTTGTCTTTATACACATAGCATCACGTTTTATATTAACTATATGGAATGTAAATACAGCTCCCAAGACATACAACGAATCTGTAACATCAGTGTTTTATATTAACTATGTGGTATGTAAAAGACTTATTTACAGCTTTATTTGCTAAATCAGAAGGTTTTATATTAACTATGTGGACTTAAAATT

>CP011848|8|8|1717958-1718248|CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAATC	TTTGTAATGGTAGTGTATTTAAGATTGAAACATCAA
GTTTTATATTAACTATATGGAATGTAAATC	AACATTAGTAGTTGTCTTTATACACATAGCATCAC
GTTTTATATTAACTATATGGAATGTAAATA	CAGCTCCCAAGACATACAACGAATCTGTAACATCAGT
GTTTTATATTAACTATGTGGTATGTAAAAG	ACTTATTTACAGCTTTATTTGCTAAATCAGAAG
GTTTTATATTAACTATGTGGACTTAAAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB68172.1\|1725529_1726579_+\|phage-protein	unknown	unknown	gnl\|CDD\|377414
CP011848.1\|AXB68163.1\|1716638_1717505_+\|prophage-antirepressor-related-protein	unknown	unknown	gnl\|CDD\|214989
CP011848.1\|AXB68161.1\|1714052_1714493_+\|phage-protein	unknown	unknown	gnl\|CDD\|378084
CP011848.1\|AXB68158.1\|1711297_1712608_+\|phage-protein	unknown	unknown	gnl\|CDD\|377435
CP011848.1\|AXB68156.1\|1710690_1711128_+\|phage-protein	unknown	unknown	unknown
CP011848.1\|AXB68171.1\|1725109_1725529_+\|phage-protein	unknown	unknown	gnl\|CDD\|378510
CP011848.1\|AXB68164.1\|1717557_1717692_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68173.1\|1726571_1727189_+\|phage-protein	unknown	unknown	gnl\|CDD\|378379
CP011848.1\|AXB68168.1\|1722256_1722946_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|236880
CP011848.1\|AXB68167.1\|1719867_1722240_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
CP011848.1\|AXB68170.1\|1724844_1725105_+\|phage-protein	unknown	unknown	gnl\|CDD\|378501
CP011848.1\|AXB68157.1\|1711120_1711297_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68169.1\|1722938_1724831_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|366353
CP011848.1\|AXB68162.1\|1715341_1715446_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68174.1\|1727200_1728226_+\|phage-tail-fiber-protein	unknown	unknown	gnl\|CDD\|372197
CP011848.1\|AXB68159.1\|1712624_1713095_+\|phage-protein	unknown	unknown	gnl\|CDD\|378178
CP011848.1\|AXB68166.1\|1719034_1719802_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373083
CP011848.1\|AXB68155.1\|1709535_1710342_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68165.1\|1718369_1718897_+\|Telomeric-repeat-binding-factor-2	unknown	unknown	gnl\|CDD\|378684
CP011848.1\|AXB68160.1\|1713153_1713981_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB68163.1\|1716638_1717505_+\|prophage-antirepressor-related-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.45371e-10
CP011848.1\|AXB68161.1\|1714052_1714493_+\|phage-protein	gnl\|CDD\|378084	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC. This is a family of phage tail assembly chaperone proteins, TACs, from Gram-positive bacteriophages, in particular PBSX from Firmicutes.	8.20802e-57
CP011848.1\|AXB68158.1\|1711297_1712608_+\|phage-protein	gnl\|CDD\|377435	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain. This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	2.06012e-36
CP011848.1\|AXB68170.1\|1724844_1725105_+\|phage-protein	gnl\|CDD\|378501	pfam10844, DUF2577, Protein of unknown function (DUF2577). This family of proteins has no known function.	4.03103e-19
CP011848.1\|AXB68171.1\|1725109_1725529_+\|phage-protein	gnl\|CDD\|378510	pfam10934, DUF2634, Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function.	9.64514e-34
CP011848.1\|AXB68173.1\|1726571_1727189_+\|phage-protein	gnl\|CDD\|378379	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313). Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins.	1.41324e-41
CP011848.1\|AXB68168.1\|1722256_1722946_+\|phage-cell-wall-hydrolase	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	3.33831e-11
CP011848.1\|AXB68167.1\|1719867_1722240_+\|phage-tail-tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	6.69895e-19
CP011848.1\|AXB68169.1\|1722938_1724831_+\|phage-cell-wall-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.81119e-27
CP011848.1\|AXB68172.1\|1725529_1726579_+\|phage-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	9.53327e-51
CP011848.1\|AXB68174.1\|1727200_1728226_+\|phage-tail-fiber-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	2.55918e-57
CP011848.1\|AXB68159.1\|1712624_1713095_+\|phage-protein	gnl\|CDD\|378178	pfam09393, DUF2001, Phage tail tube protein. This is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein whose structure adopts a beta barrel flanked with alpha helical regions.	6.78448e-58
CP011848.1\|AXB68166.1\|1719034_1719802_+\|hypothetical-protein	gnl\|CDD\|373083	pfam14471, DUF4428, Domain of unknown function (DUF4428). This putative zinc finger domain is found in uncharacterized bacterial proteins.	3.64056e-09
CP011848.1\|AXB68165.1\|1718369_1718897_+\|Telomeric-repeat-binding-factor-2	gnl\|CDD\|378684	pfam11611, DUF4352, Domain of unknown function (DUF4352). Members of these family are putative lipoproteins that fall into the Antigen MPT63/MPB63 (immunoprotective extracellular protein) superfamily.	2.90312e-17

>CP011848.1|AXB68164.1|1717557_1717692_+|hypothetical-protein
MHENLLDSIDIEKRKEEFRIKLLKIRETDIDIYNKIESIVYKLS
>CP011848.1|AXB68163.1|1716638_1717505_+|prophage-antirepressor-related-protein
MKNLIVKEFNGSQIYTFMWKEKSCWIANQIVGLFDYADVSKTIQDCIKAEDFEIEQEYDVLKGNEFNDFVTTLNVVANNIISNKARSITIFYEDGLYGFLQYTDKPIGVQFRKWLRREVLPSIRQTGAYITNNANPEKLREKASEIEKLQLAYNSTSMLKELLDGAGFDNKSKLLTAKTLYKKAGIDLPIEINEEEHYFDTKQIASKLKIYSKSNKPAQLAVCEIIKKIDLEENEVKGVWETNGSWTGTVNKYTKSVIDKVRNWIEENNRPTKIAGEKKNYHVVYKIE
>CP011848.1|AXB68162.1|1715341_1715446_+|hypothetical-protein
MIGFLLSILAGVISAYIYDKIKNHPDANKGDLKK
>CP011848.1|AXB68161.1|1714052_1714493_+|phage-protein
MSNLSAFLSQNAIKVDNVKYVASNRFLDKEGKPVEWELKVLSSEEDEALRRKCTKRVKVIGNNGKHTGQYTSEIDYNSYVAELCVASTVFPDLKDAELQNSYGVMGEAQLLKTMLTAGEYVNYTVKVNEVNGFDTSFEDKVEEAKN
>CP011848.1|AXB68160.1|1713153_1713981_+|hypothetical-protein
MEFESGIKLGKLTLIKYLGRNKHSKKVWLCQCECGNKVERVENNLKQSIKNEKPPHCGCSPNWKGQNKRFKDITGKTFGKLTVLKMSGKDKYSHNLWLCQCECGNRTITSTSALEQGKAQSCGCIRKEILLERSTTHNKSNDSLYRVYHRMIKRCTNKSNKDYNYYGGRGIEVCNEWLEDFINFYNWSIENGYRKGLTIDRINVNGNYEPSNCRWVTWEVQRNNKRNSIRVNYKGEMITLKQCAENLNVKYLFLYNQLVTKKIPLEEVIKNIGME
>CP011848.1|AXB68159.1|1712624_1713095_+|phage-protein
MAQTINAKDTVSAKKAECFITIEGKRYNFMQAIDLEAKMEKNKSEVPILGRTTKGNKTTGSTNTGSATFHYNTSIFRELLYRYKETGEDIYFDIQVTNEDPTSAVGRQTVVLKDCNMDSGIITKFDADGEYLDEDMDFTFEDWELVESFALLNGML
>CP011848.1|AXB68158.1|1711297_1712608_+|phage-protein
MALGGGTFVTQNKILPGAYINFISAKRATSSLSDRGIVAMPLELDWGIDEEAFQVTSDDFEKYSVKYFGYDYTHEKLKGLRDLFKNIRLGYFYKLNKGVKASCTIATAKYSGIRGNDLKVTVTTNIDDNAKFDVVILLDNKKVDTQIAKVITDLQDNDYITWKKDATLEASAGLVFTGGTNGEAVTGAEYQAFLDKIESYSFNALGCLATTTEIKSLFVEFTKRMRDKVGAKFQTVLYKKSDADYEGVVSIENKIKDKDLVESSLIYWATGAIAGCDINKSNTNKKYDGEFDVDVNYTQIQLEEALKTGKFIFHKVGDEVHVLEDINTFVSFTDDKNDDFSSNQSVRVLDQIANDIATLFNEKYLGKVPNDKAGRISFWNDVVKHHKELENIRAIEDFKTDDVSVELGNDKKTVIVSDAIKVINAMSKLYMTVSVN
>CP011848.1|AXB68157.1|1711120_1711297_+|hypothetical-protein
MSKALSKEDNYKFTKEQIVNSKKYVNRKDLLNAILKENELYSFSEVEDRINKFMKGVS
>CP011848.1|AXB68156.1|1710690_1711128_+|phage-protein
MLNNIIDGISVKLDKSFGEKYTIYSEDVEQGINEPCFFIVPLNPSKTPYPSGRELKKNSFDVHYFPRSEDKNFEINEIAEMLLEELEYIEIDGDLVRGTNMNFEIIDNVLHFFVDYNYFTIKNNDTNKMDTVELFGGLKRGDNFE
>CP011848.1|AXB68155.1|1709535_1710342_+|hypothetical-protein
MAKFLDITGKKFGRLRVIKFSKEIKSGKRNRKYWLCKCDCGNFKEIRTDSLTSGLVQSCGCLKKEQDKLNLTDKYQFKKKYKVQNKRLYSIWKGIISRCTDKNNKRYNRYGERNIIVCDEWFCYDNFANWALSNGYSEKLTIDRINNEGNYESSNCRWVDIKTQCRNRSTNILVKHEEKEITLIELSEKTGISYSCLRSRYSKGLVGNKLIEKVKIIEESRAKLSIEDVKEIRKKYSDGYTIKQLSEIYPVTYSSISNIVHRRTWKNI
>CP011848.1|AXB68165.1|1718369_1718897_+|Telomeric-repeat-binding-factor-2
MREGKRRRGCLFWFILIILFSGVVGAIAGNSTNNESTEKQKEDLTKYIGEEGSIGDLKLTVNSISKASEISVASGYLAYTPDSGKYGIINLTIKNQTKESQSFMLNSFTLIGPDDSKYVPSLLIDVGNKYITMDTVNPNLDVTGNIAFEIPKDLLVSDCKLKYSGSEQEFILKEK
>CP011848.1|AXB68166.1|1719034_1719802_+|hypothetical-protein
MGLFGKKKADICCICNTEIGVLNIEDGWICNSCFKEYCDALSMTKAPKILRKLDIEKTISSTKKNNELQKIFNTTNNIENYIEFDEDNKKWLVSKKSINDKKTPIIHSYEDIVKFELLENGETVTKGGIGRALAGGILFGEAGAIVGGITGKKTTRKVVDTFKIKITINNIDNPIEYIELINKKTKTNSSAYEKAYKDAHKILSTLSAITQSIKETDNINTKSVADEILKYKNLLDMEAITQDEFNTKKKELLNL
>CP011848.1|AXB68167.1|1719867_1722240_+|phage-tail-tape-measure-protein
MATIQTSIKIFDGMTPAFRNMTTSINTTINSLERLQQRLHNPLNTGGIQASQQSLNNIENILTRIEQKIGRNTNEQENFNNKIKQGSEAGSLLVSKLKSLAGIYIGIRGIESITKAADTIASTKARLNLMNDGLQTTEQLNKMIYLSAQSARASYADTAAQVAKLGILAGDAFGSSAEVIKFTELMNKAFVIGGTSANEASAAMYQLTQAMGAGKLQGDEFRSIMENAPLLATKIADAMGKTKDQLKELSSSGAITADVIRNALFKASDEIEKKFASMPVTFSQALTMMKNDAYMIFGQTLGKISGALQSVRFSEIVVSIRNVMIAISSNIYDTLNIIKNILNSEFFSNLVQGFTFCAVVITKSLGSIVNTALNIVNIFAQNWSIIKPIVFGVASVFILFRGVLLATKIATIGNVIANVAHAASSSLSALMTNIQAAALMRSNGATLSATIATWGLNAALLACPITWVVLGILAFVVVVFVAVAAVNKFAGTSLTALGVIVGAVFAAVAAIQNVMIWLLNGCIAVNEGITNGWNQCVYLMKQAIAKGVIFIIEKMASLNNSVNNAGNALGKAFIDGANIAIRGVNKLIDLINKIPGINIGKVGEATFTPVKADNSYIKQQIDSLNRWVGDAPEKVKLERMGYKDIGAAFQKGNALGTKWQNAITDKFKDTFDINKMLEDAKKKLGLDDLWNKQNPLNNLGGFGGDLGKNVKDTAGNTAKMAKTMDKSQEDLKYLRDIAEQETINRFTGVNIKIDMNNTNNISKDTDVDGIVNVLTEKLNDAMVVSAEGIV
>CP011848.1|AXB68168.1|1722256_1722946_+|phage-cell-wall-hydrolase
MAYDFYLDGVQLPIAPPKLEVKVTNKNKTVDLINTGEVNILKKEGLSEISFEAEFTHNKLPFCRGQFRDVQFFLSKLELLKTDCKPFQFIVSRELGNKVLFNTNIKVSLEEYAISEDADNGSDTKVAIKLKQYRDYSTKKLVLAPPKNETGRPNVKIEPKRVDSVNATNTKTYTVKAGDSLWSICQKQLGNGSLYKKVYELNKSMMDKANKGKNLSKYTIYKGQVLKLG
>CP011848.1|AXB68169.1|1722938_1724831_+|phage-cell-wall-hydrolase
MVDELVLANDRDVRLVIAHWEDFYEPAVIDGITWEIERRGTPSKLEFTIVMDDILEFCEGNSVRLYYKGIGIFYGYIFQKKRDKENHIKIVAYDQLRYFKNKDTYVYSNKTASELVKILAKDFNLKYNVIEDTKYKISRVEENKTLFDMILTALDDTLREKKEMYTLYDDFGRITLKNVASMKLDTVMNNDVIEDFDYNSSIDSDTYTKIKLVRDNEESGKRDVYIAQDSAHMRSWGILQMFDTVDKNMSEAEIKQKCDILLKLYNKKTKSLSLKNALGDIRVRAGCLVPVFLNLGDIELQNYMLVEKVKHTFENNSHFMDLTLVDGDEFASYSSSSYSSGNTNNKDEKKNGPAQSIMKKNTGKKVPAIFTAYYPGNNAMEGGKTDCNGKPLDVKSRTVAGPMNREGVKKTWYTDDFLNKHPVFEYGDKVKIILPGTAYDNKVYTVKDNGGRIYVETNGTYHIDILLANASECKKFGRKNGYIIIGGDEEQTYQVEGNNQSNTNNNSKEDKLISIAKSKLGCNYVYGAEGPNNFDCSGFTQWCYKQIGIKIPRTASAQSKAGKAVDLKDRSKWKAGDLLCRIGGGSSNHVVMYIGNNQIIHSPQTGDVVKIESVNSYRKGKAYTHVRRFI
>CP011848.1|AXB68170.1|1724844_1725105_+|phage-protein
MSQDLLQIIKKAAMDAVETSNPMRVVFGTIESISPLRVKIEQKLSIGEIFLIQTDTFKRYTDKKMGDKLVLIRMQGGQQYLILDRM
>CP011848.1|AXB68171.1|1725109_1725529_+|phage-protein
MLPSDNLDYDIEDVSIINFDVRQEPSKTFKLHIEKSKIDGICDDVEALKQTIFLILNTERYEHLIYSRNYGVELNDLIGEPISYVIPELERRITEALIQDDRIENIDNFEFQNIKGKVQCRFSVHTKYGNIKAEKVVSV
>CP011848.1|AXB68172.1|1725529_1726579_+|phage-protein
MFELMTFENIIKRMLDSVPDTFDKREGSIIYNALAPVAIELTETYIAMDELLDQTFVDTASYYYLEKRCKERGITPLEATHTIAKGVFNIDIPLDSRFNLGEYNYVAIERISEKTYKMKCETTGPVFELGKLIPIEYIDGLETAELTEILINGEDEESEDSLRQRYYDSLNSQSFGGNIQNYRDEVNKIQDVGGVKVYPTWDGGGTVKLVIINSNFKVPSEELVNLVQEEIDPIGHQGEGLGLAPIGHRVTVEGVTSTTINISAEITYKNGYTWENIKSIAEEAIDDYLNELNMSWEDEENLIVRISQIETRLLSIDGVLDIANTMINDVKSNLTIDSNSIVVRGEVVG
>CP011848.1|AXB68173.1|1726571_1727189_+|phage-protein
MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLHDKLKDLSNDQFLEDLTISGIKRWEKIMSITPKSNESLEDRRFRIFSKYISKLPYSERFLRNWLDNVVGEGNYELTINNATYNIHLESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNYMNFGITTLMGQEITIYPWSPPDIETYGEIDVLTGNGVGYQEITIF
>CP011848.1|AXB68174.1|1727200_1728226_+|phage-tail-fiber-protein
MAIDKSYYTIITDVGKAKIANASVTGNKVGFVKIQLGDGGGSEYTPTESQTELKNVVWEGNIGNTTTDETAPNCIILESLIPSSVGGFMIREIGYLDDENNLIAISKYKECYKPSIEQGAVVDMKVKTVLIVSNINNIELKIDPTIIFATLKDIQDLDAKISNVNTKIDTTKTELTSNIETAKTELNTRIDTENEKQNIKIDQLIAGGSNVASTQTITIDDWIDNQEGGFKATVTHGLLTQRITVSIIDATTKDNVVPDFTIIDDNSIEVRSGVKVELNVYVINGNAETHFINATVDDNRVSEMTTYSSKKIHEEIGKVAEQLTGINSNIISTVNNDILPI

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Crispr_ID: CP011848_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_9

1855522-1856476

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATGTGGTATGTAAAT	PILER-CR
GTTTTATATTAACTATGTGGTATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTATGTGGTATGTAAAT	CRT

14 spacers

The CRISPR arrays of CP011848_9

>merge|CP011848|9|1855522-1856476|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTATGTGGTATGTAAATTTAATTTATCTATAATTTAAAACGGTGAATTACATATGTTTTATATTAACTATGTGGTATGTAAATTAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTAGTTTTATATTAACTATGTGGTATGTAAATAGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGAGTTTTATATTAACTATGTGGTATGTAAATGTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATGGTTTTATATTAACTATGTGGTATGTAAATTTGTAAAATGTAAATAGCATATTAATTTTTCTTTCACGTTTTATATTAACTATGTGGTATGTAAATTGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTAGTTTTATATTAACTATGTGGTATGTAAATGGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTGGTTTTATATTAACTATGTGGTATGTAAATTTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAATGTTTTATATTAACTATGTGGTATGTAAATAAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCTGTTTTATATTAACTATGTGGTATGTAAATATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATCGTTTTATATTAACTATGTGGTATGTAAATTTTAGAAACAACAGAATAAACATAATATATAAGCATAGTTTTATATTAACTATGTGGTATGTAAATTTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATTGTTTTATATTAACTATGAGGTATGTAAATCTTATACTTAGTTAGAACTATATATCGACACAAATATGCTTTATATTAACTACATGATATATAAATTGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTTGTTTTATATTAACTACGTGGTATGTAAAT

>CP011848|9|5|1855522-1856476|PILER-CR
GTTTTATATTAACTATGTGGTATGTAAAT	TTAATTTATCTATAATTTAAAACGGTGAATTACATAT
GTTTTATATTAACTATGTGGTATGTAAAT	TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA
GTTTTATATTAACTATGTGGTATGTAAAT	AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA
GTTTTATATTAACTATGTGGTATGTAAAT	GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG
GTTTTATATTAACTATGTGGTATGTAAAT	TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC
GTTTTATATTAACTATGTGGTATGTAAAT	TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA
GTTTTATATTAACTATGTGGTATGTAAAT	GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG
GTTTTATATTAACTATGTGGTATGTAAAT	TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT
GTTTTATATTAACTATGTGGTATGTAAAT	AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT
GTTTTATATTAACTATGTGGTATGTAAAT	ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC
GTTTTATATTAACTATGTGGTATGTAAAT	TTTAGAAACAACAGAATAAACATAATATATAAGCATA
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT
GTTTTATATTAACTATGAGGTATGTAAAT	CTTATACTTAGTTAGAACTATATATCGACACAAATAT
GCTTTATATTAACTACATGATATATAAAT	TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT
GTTTTATATTAACTACGTGGTATGTAAAT

>CP011848|9|9|1855522-1856476|CRISPRCasFinder
GTTTTATATTAACTATGTGGTATGTAAAT	TTAATTTATCTATAATTTAAAACGGTGAATTACATAT
GTTTTATATTAACTATGTGGTATGTAAAT	TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA
GTTTTATATTAACTATGTGGTATGTAAAT	AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA
GTTTTATATTAACTATGTGGTATGTAAAT	GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG
GTTTTATATTAACTATGTGGTATGTAAAT	TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC
GTTTTATATTAACTATGTGGTATGTAAAT	TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA
GTTTTATATTAACTATGTGGTATGTAAAT	GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG
GTTTTATATTAACTATGTGGTATGTAAAT	TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT
GTTTTATATTAACTATGTGGTATGTAAAT	AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT
GTTTTATATTAACTATGTGGTATGTAAAT	ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC
GTTTTATATTAACTATGTGGTATGTAAAT	TTTAGAAACAACAGAATAAACATAATATATAAGCATA
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT
GTTTTATATTAACTATGAGGTATGTAAAT	CTTATACTTAGTTAGAACTATATATCGACACAAATAT
GCTTTATATTAACTACATGATATATAAAT	TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT
GTTTTATATTAACTACGTGGTATGTAAAT

>CP011848|9|5|1855522-1856476|CRT
GTTTTATATTAACTATGTGGTATGTAAAT	TTAATTTATCTATAATTTAAAACGGTGAATTACATAT
GTTTTATATTAACTATGTGGTATGTAAAT	TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA
GTTTTATATTAACTATGTGGTATGTAAAT	AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA
GTTTTATATTAACTATGTGGTATGTAAAT	GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG
GTTTTATATTAACTATGTGGTATGTAAAT	TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC
GTTTTATATTAACTATGTGGTATGTAAAT	TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA
GTTTTATATTAACTATGTGGTATGTAAAT	GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG
GTTTTATATTAACTATGTGGTATGTAAAT	TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT
GTTTTATATTAACTATGTGGTATGTAAAT	AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT
GTTTTATATTAACTATGTGGTATGTAAAT	ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC
GTTTTATATTAACTATGTGGTATGTAAAT	TTTAGAAACAACAGAATAAACATAATATATAAGCATA
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT
GTTTTATATTAACTATGAGGTATGTAAAT	CTTATACTTAGTTAGAACTATATATCGACACAAATAT
GCTTTATATTAACTACATGATATATAAAT	TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT
GTTTTATATTAACTACGTGGTATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB68276.1\|1838346_1838946_-\|tellurium-resistance-protein	unknown	unknown	gnl\|CDD\|226595
CP011848.1\|AXB68285.1\|1853603_1854875_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|238628
CP011848.1\|AXB68287.1\|1857196_1857289_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68294.1\|1865346_1866234_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213231
CP011848.1\|AXB68277.1\|1839048_1839846_-\|lipoprotein	unknown	unknown	gnl\|CDD\|224381
CP011848.1\|AXB68292.1\|1863559_1863736_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68279.1\|1841625_1843356_+\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|224671
CP011848.1\|AXB68280.1\|1844756_1847231_+\|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein	unknown	unknown	gnl\|CDD\|234769
CP011848.1\|AXB68282.1\|1849110_1851468_+\|cation-transporting-ATPase	unknown	unknown	gnl\|CDD\|319795
CP011848.1\|AXB68283.1\|1851553_1851871_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377724
CP011848.1\|AXB68286.1\|1856884_1857172_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68281.1\|1847230_1848688_+\|glycine-dehydrogenase-subunit-2	unknown	unknown	gnl\|CDD\|235292
CP011848.1\|AXB68291.1\|1861874_1862459_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP011848.1\|AXB68295.1\|1866239_1867013_+\|ABC-transporter-permease	unknown	unknown	unknown
CP011848.1\|AXB68290.1\|1859708_1861553_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176521
CP011848.1\|AXB68293.1\|1864310_1865333_+\|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component	unknown	unknown	unknown
CP011848.1\|AXB68288.1\|1857709_1858261_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
CP011848.1\|AXB68278.1\|1840155_1841142_-\|lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|161920
CP011848.1\|AXB68289.1\|1858451_1859414_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|107204
CP011848.1\|AXB68284.1\|1852209_1852965_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378848

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB68276.1\|1838346_1838946_-\|tellurium-resistance-protein	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	2.42153e-79
CP011848.1\|AXB68285.1\|1853603_1854875_-\|guanine-deaminase	gnl\|CDD\|238628	cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.	1.3619e-169
CP011848.1\|AXB68294.1\|1865346_1866234_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	4.66381e-105
CP011848.1\|AXB68277.1\|1839048_1839846_-\|lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.07907e-94
CP011848.1\|AXB68279.1\|1841625_1843356_+\|Na+/H+-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	2.00354e-58
CP011848.1\|AXB68280.1\|1844756_1847231_+\|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein	gnl\|CDD\|234769	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA.	0
CP011848.1\|AXB68282.1\|1849110_1851468_+\|cation-transporting-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
CP011848.1\|AXB68283.1\|1851553_1851871_-\|hypothetical-protein	gnl\|CDD\|377724	pfam06865, DUF1255, Protein of unknown function (DUF1255). This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.	2.92347e-53
CP011848.1\|AXB68281.1\|1847230_1848688_+\|glycine-dehydrogenase-subunit-2	gnl\|CDD\|235292	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB.	0
CP011848.1\|AXB68291.1\|1861874_1862459_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.77782e-93
CP011848.1\|AXB68290.1\|1859708_1861553_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176521	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.	5.10494e-94
CP011848.1\|AXB68288.1\|1857709_1858261_-\|transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	4.10679e-17
CP011848.1\|AXB68278.1\|1840155_1841142_-\|lipoate-protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	1.48553e-93
CP011848.1\|AXB68289.1\|1858451_1859414_+\|cysteine-synthase-A	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	3.00924e-108
CP011848.1\|AXB68284.1\|1852209_1852965_+\|hypothetical-protein	gnl\|CDD\|378848	pfam12395, DUF3658, Protein of unknown function. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam08874. There are two completely conserved residues (D and R) that may be functionally important.	1.79279e-29

>CP011848.1|AXB68285.1|1853603_1854875_-|guanine-deaminase
MLKVLKGNIIFTKTSETFTVFENSYIILEKGKVKGIFKEIPKEYKNLKVVDYTDKLIIPGMNDLHAHASQFKNLGMAMDKELLPWLETYTFPEESNYKDIEYATKMYKKFVKELWKSGTTRIAVFATVHKEASMKLMDIFKEVGLGAYVGKVNMNMNCPDTLLENTQDSIADTEEIINKYSDTDSIVKPIITPRFIPSCTSELLKGLGDLCLKYNIPMQSHLSENYDEIEWVRSLEPESKFYGDAYNRYNLFGQTPTLMAHCVHCSQDEIDLMRENNVMAVHCPASNFNVGSGAMPIRKLIDNNIRLALGSDISGGHTLSIFKAMVSAIQLSKLYWVNSGKKYNFLSLSEAFYIATKSGGSFFGKVGSFEEGYDFDALIIDDSNLNHDNYSILERLERFIYVGDDRNIIHRYVCGKLIEEPNI
>CP011848.1|AXB68284.1|1852209_1852965_+|hypothetical-protein
MAHICFEDICYLLLKEAMKLKLIPHNKIVLFEDDLSIGNIFDVNNYELRENIFKIRNVFENNPKLLFKPDLLEDRKLSKCRNIIIWCANNPKDLCGVYYVVSKFQDKNIKIALVDEKKTEDALIRYSFTSEMSPEDFPFFLDKTLEIGFNEKLEFKNKWDVLVKENSIFRALVGNEIKSVEETYFDKYILRNISDKWQPLIEVVANCMFEDEMRVKDWFILWRLEKMASLKIVKIKGSKGDFYSDKEIRKV
>CP011848.1|AXB68283.1|1851553_1851871_-|hypothetical-protein
MSEFKNVTAVKKANVYFDGKVSSRVIILPNGERKTLGLMLPGEYTFSTREEEIMEMLAGSMDVKLPGSNEFVTYKEGQKFNVPSDSSFDLKVNEVVDYCCSYIAD
>CP011848.1|AXB68282.1|1849110_1851468_+|cation-transporting-ATPase
MDKVNLERYSCDINVGLNKNQLQSRIDDNLINAFDNGKTKTYKQIFKDNIFTLFNLINIVLVCLLVSVGSFKNTLFIFIAVINTIIGVIQEIRAKRLLDNLSVIVSNKVSVIREKEKKEIDVQELVLDDIMILKTGNQICADSKVLNGKLEVNESLVTGESDIIIKNKDDFLYSGSFVVSGEAFVRVENIGKDNYANKIVNDAKISKKHNSQLRNSLNSILKIVGIIIIPLGIILFAKQHFGNGDSIATSVVGTVAAVNGMIPEGLTLLTSIALAVGTIKLASHKTLVQELYCVETLARVDTLCLDKTGTITEGKMQVDDIVMLEEVDINEIMGNICNSLKDDNATLNAIRDKYNVLDTYKAKNLIPFSSERKYSGVTFENKGTYLLGAFEFIFKEKNKKIRIEVEKYSKKGNRVIVLAHSDSYMEDNNIPEDIKPLAFILILDKIRDEAKETLEFFYNEGVDIKIISGDNPITVSEVARKAGLKTASNFIDATTLKNDNDIYEAVDKYSVFGRVSPQQKKQMILALKKQNHTVAMTGDGVNDVLALKEADCSIAMASGSDVTKNVSNLVLLDSNFASMPKVVMEGRKVINNIQRASSLFLVKTIFSFFLSLLTLFFFSRQYPFVPIQLSLIGAVTVGIPSFFLALEANKSRISGNFLLNILKNALPGALCVTVNVIIVYNIVEYLGYSSSVFSTMCAILTGVCGLLILRQQCLPFNKERLFLIVSMTIAFVIGILFLGGLFSFVALSRELILITMALAILMPIMIKVMLFVLDEILETIVPDLN
>CP011848.1|AXB68281.1|1847230_1848688_+|glycine-dehydrogenase-subunit-2
MKEYNSLLIDISKKGRKAYSLPKLDIDDIKIEDMIDQDMARQSELNLPEVGELELVRHYTLLSNKNFGVDTGFYPLGSCTMKYNPKINEDMAALPNFTGMHPYQSSDTAQGSLSLMYDLSRRLAEITGMDEVTLQPSAGSHGEFTGLMIIKAYHENRGDHKRTKVIIPDSAHGTNPASAAMANFDVIQIASDKNGAVDINALKEVLNDEVAALMLTNPSTLGLFEKNIKEIATLVHEAGGLLYYDGANMNAIMGITRPGDMGFDVVHLNLHKTFSTPHGGGGPGAGPVGVKKELVPFLPIPLIERKEDKYVLNYDREKSIGKIKNFYGNFGVLVRAYTYILTMGRDGLKEASEMAVLNANYIKESIKDDYILPIDTLCKHEFVLGGLPRGEANIKTIDIAKRLLDYGYHPPTMYFPLIINEALMIEPTESESIETLDSFIEAMKSVAKEAKEEPELLKTAPHNTLVKRVDDARAVKKPILTWSQR
>CP011848.1|AXB68280.1|1844756_1847231_+|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein
MNELKRVSLYNIHKELGAKLVEFAGWEMPLEYEGINKEHEKVRKSAGIFDVSHMGEVQIKGAESEKFIQNLVTNDISTLKINDIIYTPMCYENGGVVDDLLIYKFGEEDYLLVINAGNIDKDVAWIIKQSEGYNVDIKNISSEVSQLAIQGPKAEEILQKITDIDLNSIKFYKSIPSTKVCGCPCLVSRTGYTGEDGFEIYCKNKYVEIIWNEVLKVGGEDICPAGLGCRDTLRFEAALPLYGHEINEHISPIEGGLSIFVKTNKESFIGKSILSKEKESGAKRKLVGFEMQGKGMPRNGYDIRIGDKTVGFVTTGCASPTTGKILGMGIIDSEYAKVGNEIGIAIRKKVVPAVIVKKPFYKKQYKKDNIILNKENKFSYIPATSEDKSKMLKVVGLNSVDELFSDIPEEVKLKRDLNLEIGKSELEVSKIVKRLSEENLSLEDLTCFLGAGAYDHYIPSIIKHITSRSEFYTAYTPYQAEISQGTLQVVFEFQSMIAEITGMEIANASMYDGATAAIEACIMAMNQTRKSKIVVSKTIHHETLSVLRTYLQYKDCEIVEIDFCNEYGTTDIEKLKASVDKDTACVLIQTPNFFGIIEEMEEIEKITHENKAMLIMSVDPISLGVLKTPGEIGADIVVGEAQSLGNPLNFGGPYVGFLASKSKYTRKMPGRIVGQSLDVEGKIAYVLTLQTREQHVRREKATSNICSNQALNALVASIYMATMGKEGFKEVGMQSMKKAHYTYNKLVQTGKYKPIFKGKFFKEFAVQGNLNIETINDKLLEENILGGYNLEYNYPELKNSTLLCVTEKRSKEEIDKLVGIMEGL
>CP011848.1|AXB68279.1|1841625_1843356_+|Na+/H+-antiporter
MRNKKINIIFLTTIMFIMSTVMVFAEEDIDTIALANAEKFGILTLIPPLVAIILAFITKNVIISLLIGILSGSFIIKASGINVFATFIQAFLDLVDRALVSLADPWNAGIILQVLAIGGVINLVAKMGGAKAIAEALAKRAKSAKGTQLITWFLGLLVFFDDYANSLIVGPMMRPVADKMKISREKLAFIIDATAAPVAGLAIISTWIGLEVGLIHDAFESISIDVDAFGIFLNTIPFRFYNILILAFIVISALLLKEFGPMRKAEIKSRSRKISIDLDEGVEELDDLAPKNGVKLSVWNAIIPIGTLIIVALASFYYSGYTSIMGGDDKALIQLFTNSPYSFEAIKEAFSASDASRALFQSALVASLVAIIMAVVKKIFTISEAIDVWIDGMKSLVITGVILILAWSLSSVIKELGTAKFLIHLLSGSLPPFLLPSLIFGLGAIISFATGTAYGTMGILMPLAIPLAYSLNPDMSYVIVSTSAVLTGAIFGDHCSPISDTTILSSMGAGCNHIDHVNTQMPYAIFTAVITIVFGYIPAGLGLPIYIVLPVAIAAIFVGIQIIGKKVDEAEIELVE
>CP011848.1|AXB68278.1|1840155_1841142_-|lipoate-protein-ligase
MLLIYNEKTNPYFNLAMEEYLLKNFDEDLFILWRNEPSIIVGKNQNTLSEINLEYIKEYSIPVVRRQSGGGAVFHDLGNINFTFIACNNNNFSDFRRFTQPIIDLLKTLDVNAEFSGRNDLLIDGKKFSGNAQYNYKNKVMHHGTLLFSSEINDLSKALKVKPIKFEGKGIKSVKSRVTNISEHLHSKMDILEFKDAIMDYLSKTNTDNTNYCLNEHDIKQIEKLTKSKYETWDWNFGNSPKYTLSNELKYSGGNVEFNLNVDKGIITSIKFFGDFFGKCDVAFVENKLIGIRHEENALRNTLDSIEINDYFLGADTDILVSGILGVK
>CP011848.1|AXB68277.1|1839048_1839846_-|lipoprotein
MKFKKLLCLLLCLVLTLAVVGCSKAKDDKKIVVGATLVPGGELLEELKPLIKEKGYTLEVKNFDDYILPNEALNNGEIDANLFQHEPYLKEAVKAKGYKIMAGKKLYVCPAILYSYKIKSVDEFKKGDTIAISNNPSSCSKNLRYLESIGLLTLPKGDGLVSPKDIIENPKGIQFKELDIAQIPSSLPDVTAAFIDTTYAVPAGLDAKKNGIYTAPINDEYANLLAFRTEDKDSEKIKVLQDVLTSDKARSLIEEKYKGIVIPTF
>CP011848.1|AXB68276.1|1838346_1838946_-|tellurium-resistance-protein
MAIELKKGQKINLTKKENSDLGEILVNLNWNQKVQKKGFFGSLRSSNIDLDLGCLFEMKNGVKGAVQALGNAFGSLDNPPFAQLDGDDRTGSNTQGENLRINGNKIKDIKRILIYAFIYEGVANWSEADGIVTIKQKQDSDLVVKLDEHKNGYNMCSIALIENVNDETFSVEKVVKYFKGHREMDTEFHWGLKWVAGRK
>CP011848.1|AXB68286.1|1856884_1857172_+|hypothetical-protein
MKKILYALYSFIVIIANFRLKEKNYNFILLAIFFILLLIQNGVLKTGYQNRATFYQDNYFNGEDKNDKIKFITIKIFIFLSLPLCFNILFNYLTS
>CP011848.1|AXB68287.1|1857196_1857289_+|hypothetical-protein
MIKVRLCVVYIKYKVHIVIKQKFHINEEKI
>CP011848.1|AXB68288.1|1857709_1858261_-|transcriptional-regulator
MSINTVIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVPYTAILEQPQNETFIVSKTDIDVQVSENKDYRLYCYYPNTPTRNFELFQMELEEGHSYTSVGHSEKSQEYIMIIEGQLKLEVNDSIYQLRENDSICFSAESIHTYHNQGEKTLKAVIINYYPV
>CP011848.1|AXB68289.1|1858451_1859414_+|cysteine-synthase-A
MRVLNNVTEAIGNTHMLHLSKIADEFGVQGNIYAKMEYLNPGFSKKDRVALQMITEAENAGLLVPGQAVVELTSGNTGTGLAIACACKGYKFIACMSKGNSMERARMMKALGAEVVLVDQMPNSVHGQVSGEDLALVEIEAQKIAKERNAFRADQFNLEACNHAHEKYTAEEMWEQLDGNIDVFVDFLGSGSTFAGCSKTLKKHNSSIKCYVVEPETAAIYSGKEITDQGHKIQGGGYSMDLPLVDKKLIDGYIQVTDEEATDVARKLAKLEGVFAGFSSGANVCAAIKLLKSSEKGKNIVLTLNDSGLKYLSTDLYEEL
>CP011848.1|AXB68290.1|1859708_1861553_+|glycerophosphoryl-diester-phosphodiesterase
MQKRILRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKSLHIVYLNMDNFIKVLTNPMSIVLIILSVIILAFYAFFEFTSVIICFNKSIKYEKIGLFELFKISFKNSIKLLYPKNILLFIFVILIIPLVNTVLISGFIGKIQIPEYILDYIKSDIILNIIYMIFLLIIYISVIRWIFSIHEITLNTENFKRARKESVNLIKRKIIRTIIYSLILSLVVAIIGYAIYHSGIIFIGIWTKYCTDMEFLKNVFINRCIAFEEYFRLILSIFIFILDIGFISATYYQYKGVNISKNNIKKEKKSISKIVFNLVLILLISYIESVAFSSHINGMFNTSFSFYTTAIAHRAGAEMAPENTLAAIEEASNAKADYAEIDVQETKDGELIVLHDSNFKRTTGVDKNVWDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIPTLKEMIKYSKGKVKLLIEIKLNGHEKGDIVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVDIYGIESTFVNKTVVEKIHKMNKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYWKKNGFISQVSDYLF
>CP011848.1|AXB68291.1|1861874_1862459_+|sugar-O-acetyltransferase
MTEREKMLAGELYDCGDIELLTQWHKAKDLVRDYNQTDSSDLEKKEKILNELLGGKDKNLWITAPYYVDYGNNIYFGNNCEVNMNCTFLDDNKIIIGDNALIAPNVQIYTAFHPTNAGDRFGNVKEDGSFEFCKTQTAPVTIGDNVWIGGGAIIMPGVTIGDNVVIGAGSIVTKDIPSNMIAYGNPCRIIRENK
>CP011848.1|AXB68292.1|1863559_1863736_-|hypothetical-protein
MFIGEIDKCTHILTAYISSSYDYCNFLDTQLDDFISEYGETVVETCLHQVLLLVSRYN
>CP011848.1|AXB68293.1|1864310_1865333_+|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component
MVNWEIKKLAKSKSMFISLGILVLILMISIFITPVLETERYYIDKEKGCIEDTRSGIDIGNEKFQNKINVLKQFSNQTDTGEFSKKIELMSKKKLDNLSVNEYKDISFWKVFNYRVTNSLINVGMLIIISIIISNIYVDEVVTSVKDIILSSKEKKKALKSKIFVALLVPLVIYSVYLMGIFIITCMQQGVPVNGDLESFRIVDNVVALKTNLSITKYVILNIGIELLMFEGWAMIAIFGSFISKSSISSISFFIFIISITKIMSVIHILPKKLLSVVSNVNYYDLIFGFNKIIGNYLGDIMIFKVNIDIVNIAIGLLMAILIGAMSLCFLVIKSDYISR
>CP011848.1|AXB68294.1|1865346_1866234_+|ABC-transporter-ATP-binding-protein
MNKLEIENLSKIYGKKVANDKITVTLENGVYGLLGPNGAGKSTLMKQITTLIKPDEGQILYNGEDIFKMDANYRNILGYLPQEFGVYKNFTAKEFLQYIGALKGLRGKYLNSKIGELLDLVGLYDVRNKSIGKFSGGMKRRVGIAQVLLNDPKIIVFDEPTAGIDPQERARFRNLIAKMSRDKIIILSTHIISDIESVAKETIMIKDGKLLMKGTHKDILSHMENKVYNVQVKNECEVDDIQSKYKVVSIQSDIDSVVLRIVSEDIPSGDNIQPVQAKFEDVYMFYFDLEDAREV
>CP011848.1|AXB68295.1|1866239_1867013_+|ABC-transporter-permease
MMYLVKAEMIKILKSKSVWIIWLFLIFLGFLLIRKFDVLDTYADIFYKIEGSIPLIGLIMFIITSGNYIKEYDSNMTGLINTTKKGKKSVVLSKLVANGLILSIINISFILLVGIRGFSFFDFKNLNEPIHNLWYFGNSNLNLTVIQMYIIVILTTIFASFIFAQIGLTLSSIFKSAVIPFILGGLIMAIPYFSVGFIPDKAIKFMSVTPNWIMMSQQMVRYNVPSILIVFSIVISIILMIVLTKITYENFTSSKRF

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Crispr_ID: CP011848_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_10

2205780-2206463

Orphan

I-A

Consensus_repeat	Method
TTTACATTCCATATAGTTAATATAAAAC	CRT
CTTTACATTCCATATAGTTAATATAAAAC	CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAAG	PILER-CR

10 spacers

The CRISPR arrays of CP011848_10

>merge|CP011848|10|2205780-2206463|CRT,CRISPRCasFinder,PILER-CR
TTTAGAATATGTATTATTAAATATAAAGTGACTCAATCTTTATTTAATAAGAAAAAACATTTATATTACATATAATTAATATAAAACTAATGAAGTGGGTGTATGAAAGAGAAAACACAATTTTAATTTACATTCCATATAGTTAATATAAAACAGTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGACTTTACATTCCATATAGTTAATATAAAACTTTCTGTATATTTTAGTTGTGTTTTAATATTATAACACTTTACATTCCATATAGTTAATATAAAACATGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATTCTTTACATTCCATATAGTTAATATAAAACGAGGAAATTTTATACTAATGACTGATGCTAGATTTAACTTTACATTCCATATAGTTAATATAAAACTATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAGCTTTACATTCCATATAGTTAATATAAAACAAGCAACAGCAAGAGTCGCGACAACATTAAAAACTTCCTTTACATTCCATATAGTTAATATAAAACCTTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACTCTTTACATTCCATATAGTTAATATAAAACAGTCCAGCGTTGTGTGGTCGTAACACACCAATCCTACTTTACATTCCATATAGTTAATATAAAAC

>CP011848|10|6|2205780-2206463|CRT
TTTAGAATATGTATTATTAAATATAAAG	TGACTCAATCTTTATTTAATAAGAAAAAACA
TTTATATTACATATAATTAATATAAAAC	TAATGAAGTGGGTGTATGAAAGAGAAAACACAATTTTAA
TTTACATTCCATATAGTTAATATAAAAC	AGTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGAC
TTTACATTCCATATAGTTAATATAAAAC	TTTCTGTATATTTTAGTTGTGTTTTAATATTATAACAC
TTTACATTCCATATAGTTAATATAAAAC	ATGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATTC
TTTACATTCCATATAGTTAATATAAAAC	GAGGAAATTTTATACTAATGACTGATGCTAGATTTAAC
TTTACATTCCATATAGTTAATATAAAAC	TATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAGC
TTTACATTCCATATAGTTAATATAAAAC	AAGCAACAGCAAGAGTCGCGACAACATTAAAAACTTCC
TTTACATTCCATATAGTTAATATAAAAC	CTTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACTC
TTTACATTCCATATAGTTAATATAAAAC	AGTCCAGCGTTGTGTGGTCGTAACACACCAATCCTAC
TTTACATTCCATATAGTTAATATAAAAC

>CP011848|10|10|2205838-2206463|CRISPRCasFinder
ATTTATATTACATATAATTAATATAAAAC	TAATGAAGTGGGTGTATGAAAGAGAAAACACAATTTTA
ATTTACATTCCATATAGTTAATATAAAAC	AGTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGA
CTTTACATTCCATATAGTTAATATAAAAC	TTTCTGTATATTTTAGTTGTGTTTTAATATTATAACA
CTTTACATTCCATATAGTTAATATAAAAC	ATGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATT
CTTTACATTCCATATAGTTAATATAAAAC	GAGGAAATTTTATACTAATGACTGATGCTAGATTTAA
CTTTACATTCCATATAGTTAATATAAAAC	TATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAG
CTTTACATTCCATATAGTTAATATAAAAC	AAGCAACAGCAAGAGTCGCGACAACATTAAAAACTTC
CTTTACATTCCATATAGTTAATATAAAAC	CTTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACT
CTTTACATTCCATATAGTTAATATAAAAC	AGTCCAGCGTTGTGTGGTCGTAACACACCAATCCTA
CTTTACATTCCATATAGTTAATATAAAAC

>CP011848|10|6|2205906-2206463|PILER-CR
TTTACATTCCATATAGTTAATATAAAACA	GTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGAC
TTTACATTCCATATAGTTAATATAAAACT	TTCTGTATATTTTAGTTGTGTTTTAATATTATAACAC
TTTACATTCCATATAGTTAATATAAAACA	TGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATTC
TTTACATTCCATATAGTTAATATAAAACG	AGGAAATTTTATACTAATGACTGATGCTAGATTTAAC
TTTACATTCCATATAGTTAATATAAAACT	ATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAGC
TTTACATTCCATATAGTTAATATAAAACA	AGCAACAGCAAGAGTCGCGACAACATTAAAAACTTCC
TTTACATTCCATATAGTTAATATAAAACC	TTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACTC
TTTACATTCCATATAGTTAATATAAAACA	GTCCAGCGTTGTGTGGTCGTAACACACCAATCCTAC
TTTACATTCCATATAGTTAATATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB68614.1\|2199477_2200242_-\|GCN5-related-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379530
CP011848.1\|AXB68618.1\|2203921_2204389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378586
CP011848.1\|AXB68620.1\|2205384_2205669_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68628.1\|2215082_2215700_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68624.1\|2210102_2211188_+\|permease	unknown	unknown	gnl\|CDD\|223701
CP011848.1\|AXB68622.1\|2208559_2209138_-\|rRNA-methylase	unknown	unknown	gnl\|CDD\|377744
CP011848.1\|AXB68615.1\|2200544_2201018_+\|N-acetyltransferase-GCN5	unknown	unknown	gnl\|CDD\|379326
CP011848.1\|AXB68616.1\|2201386_2201944_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP011848.1\|AXB68629.1\|2215869_2217570_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68626.1\|2212218_2213511_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
CP011848.1\|AXB68617.1\|2202201_2202900_+\|hydrolase	unknown	unknown	gnl\|CDD\|274612
CP011848.1\|AXB68619.1\|2204399_2204615_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
CP011848.1\|AXB68625.1\|2211342_2212002_-\|lipoprotein	unknown	unknown	gnl\|CDD\|367360
CP011848.1\|AXB68630.1\|2217966_2218530_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB68627.1\|2213528_2214722_-\|aspartokinase	unknown	unknown	gnl\|CDD\|235843
CP011848.1\|AXB68612.1\|2196494_2197712_-\|arginine-biosynthesis-bifunctional-protein-ArgJ	unknown	unknown	gnl\|CDD\|239065
CP011848.1\|AXB68611.1\|2195619_2196480_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239783
CP011848.1\|AXB68613.1\|2197753_2198788_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
CP011848.1\|AXB68623.1\|2209195_2209912_-\|23S-RNA-and-tRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
CP011848.1\|AXB68621.1\|2207293_2208166_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB68614.1\|2199477_2200242_-\|GCN5-related-N-acetyltransferase	gnl\|CDD\|379530	pfam14268, YoaP, YoaP-like. The YoaP-like domain is found at the C-terminus of the B. subtilis YoaP protein. It is found in bacteria and archaea, and is approximately 40 amino acids in length. The family is found in association with pfam00583. There is a single completely conserved residue A that may be functionally important.	9.96258e-16
CP011848.1\|AXB68618.1\|2203921_2204389_+\|hypothetical-protein	gnl\|CDD\|378586	pfam11188, DUF2975, Protein of unknown function (DUF2975). This family of bacterial proteins have no known function. These proteins are likely to be integral membrane proteins. The proteins contain a highly conserved glutamic acid close to their C-terminus.	1.39911e-05
CP011848.1\|AXB68611.1\|2195619_2196480_-\|acetylglutamate-kinase	gnl\|CDD\|239783	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino Acid Kinase Superfamily (AAK).	1.30004e-152
CP011848.1\|AXB68624.1\|2210102_2211188_+\|permease	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.57662e-37
CP011848.1\|AXB68622.1\|2208559_2209138_-\|rRNA-methylase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	7.51313e-74
CP011848.1\|AXB68615.1\|2200544_2201018_+\|N-acetyltransferase-GCN5	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.1159e-50
CP011848.1\|AXB68616.1\|2201386_2201944_-\|transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.56319e-10
CP011848.1\|AXB68627.1\|2213528_2214722_-\|aspartokinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	8.79458e-175
CP011848.1\|AXB68617.1\|2202201_2202900_+\|hydrolase	gnl\|CDD\|274612	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae.	0.000405605
CP011848.1\|AXB68619.1\|2204399_2204615_+\|transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	5.69774e-28
CP011848.1\|AXB68625.1\|2211342_2212002_-\|lipoprotein	gnl\|CDD\|367360	pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.	1.75004e-05
CP011848.1\|AXB68612.1\|2196494_2197712_-\|arginine-biosynthesis-bifunctional-protein-ArgJ	gnl\|CDD\|239065	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.	0
CP011848.1\|AXB68626.1\|2212218_2213511_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	1.28076e-170
CP011848.1\|AXB68613.1\|2197753_2198788_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
CP011848.1\|AXB68623.1\|2209195_2209912_-\|23S-RNA-and-tRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.16227e-97
CP011848.1\|AXB68621.1\|2207293_2208166_-\|transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.10432e-65

>CP011848.1|AXB68620.1|2205384_2205669_-|hypothetical-protein
MLVYNKSFYPNDIFPRLDFSKIKKQLKLIDNDLSDFGRICIIEKEHYTISVNSIGEINVYYDLEYENKVYRIVYEIEKLFKSQVGRFSISTYRN
>CP011848.1|AXB68619.1|2204399_2204615_+|transcriptional-regulator
MAIVVNLDVMMAKRKISLKDLAEKIDITNANLSILKTGKAKAIRFTTLNEICKALDCQPGDILEYVEDEND
>CP011848.1|AXB68618.1|2203921_2204389_+|hypothetical-protein
MITKFFSNILSVFLYFLLSLLGVAGIIFLCMIPMFLYDFSSDKVIALIARILYFSDYFIVILFLIFIINSTKYSPFILENVKRFKVMGCCLLINTIIECVIGYNSNTSLIMIFGDNSGGISPLMVISFIFALMCFVIAETFDKAIKIKEDNDLTI
>CP011848.1|AXB68617.1|2202201_2202900_+|hydrolase
MEKKYFEIHGVPSILWGNPSSKLYIYIHGQCGNKEEAEAFANIAVPHEYQVLSVDLPEHGERKREKNSFNPWHVVPELVSIMEYAKCHWNQISLYANSIGAWFSMLSFEKENLRECIFVSPILDMQQLISNMMLWANVSEEQLKHELIIPTSFGHTLSWEYLQYVKQHPITQWNVPTKILYGKHDELTEIGVVEKFVEKFNCNLTILENGKHWFNTPQELNSLYEWLNTLVK
>CP011848.1|AXB68616.1|2201386_2201944_-|transcriptional-regulator
MRVSREIVIQATSDIVNKDGLNKVSLKVIAEKLGIRTPSLYNHIESLDDLLLEVAHKGMREMNSQMIKATIGNFGDTAIKCISIAYFNFIISNPGVYETIQWATWHGNNETLEIFDEYKSLLEKLILSCNLNTKNTGEVLNLIMSVLHGYSTLQLGKSLLSKEEAIKGLADSIDTVLLGIHKKYD
>CP011848.1|AXB68615.1|2200544_2201018_+|N-acetyltransferase-GCN5
MFKEYLIRELKEDDIKNALDLIWNVFEEFESPDYCDEGITTFHQFIEYNSIIEKIKEKTLFFWGCFDSKKLIGVLAIRNLNHICMLFVDKNYHKHGVAKKLMTTGIQYCICNKFNLTEITVNSSPYAVEVYHKLGFEDIAVEQIVDGIRFTPMKLLI
>CP011848.1|AXB68614.1|2199477_2200242_-|GCN5-related-N-acetyltransferase
MQIIDININNIDSRHICCSISEKKGENCVFSKKAWMKNNFDKGLAFKRFDVRGKAFIEYIPAENAWCPITADNYIFINCFWISGKFKGQGYSNLLLQECVDDAKSKGKYGLVVLSSSKKMPFLSDAKYLKYKGFCLADTSEPNYELLYFPFTDNAPIPCFKNCVKKRKLNENGIVLYYSNQCPHTEKYAPILKKIANSRGIDVNLIKFETAKEAQNAPAPFTTYSLFFNGEFVTNEILSEKKIEKFLDTNIKKI
>CP011848.1|AXB68613.1|2197753_2198788_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MNKIKVGIIGATGYVGAELIRLLMNHDKVEVTAIGSNSYVGKNIVDIYPSIGYKNNMICIENEKVIDMCDVVFTALPHGVSEKFVIKAIKSKKKVIDLGADFRIKDEEVYSKWYGVSFIDKILHKKAVYGLSEIYKEDIKDADIIANPGCYPTSISLPLMPLLSSKLIKNNNIIIDSKSGLTGAGRELSISSHFTEVNENITAYKIGKHRHTPEIEQNLSESCKEKVSVVFTPNLIPVNRGILSTIYCTKEDNISINDIHRKLTDYYEFKEFIEVLPLDKVASLKNVRFSNKCVISLHENGDTLIICSAIDNMIKGAAGQAIQNMNIIFGIEENTGLKNIAPSF
>CP011848.1|AXB68612.1|2196494_2197712_-|arginine-biosynthesis-bifunctional-protein-ArgJ
MEIIKGGVTVSEGFFASGIHCGLRKNKEKRDLALVYSDVLCDAAAVVTQNKVKGNPVYVTQEHIKNGKAQAIIVNSANANTFNGKEGLINAYKMAKFTSDKLNIKENDVLVASTGVIGKPLNINLIEENMDELVNNLSKQGHIGAREAIMTTDIIKKEIAVAIMYGDKKITIGGMAKGSGMIHPNMATTLGFITTDANIDGVLLKEALKIAVDKSFNRVSVDGDTSTNDMVMILANGKAKNDRINKKDEHYQVFLSALTYVCIELAKLVAKDGEGCTKLIECYINGALSEEHAVKLAKTVISSSLVKTAVFGADANWGRILCALGYAGEEIDMEKVDIIFESMKGYIEVCKNGNGLDFNEEKAKKILEDDEISILVDLNMGNARGNAWGCDLSYDYVRINGSYRN
>CP011848.1|AXB68611.1|2195619_2196480_-|acetylglutamate-kinase
MINIEKANTLIEALPYIEKHQGKTIVVKYGGSAMKKDGLKESVMEDLVLMSYVGINIVLVHGGGAEINKMLAKVDIESKFVNGLRYTDEETMEIVKMVLAGKVNKDLVNKIHTKGGKAVGLCGMDNNMILCDPYKNYELGFVGEIKKVNVELIESCLKSGYISVIATIGVGDDGETYNINGDTAASAIAKELNADKLILLTDVPGLLREPDEEKSLITEVILEDVDKLFEEGIITGGMIPKIEGCVDALNNGVNRVHILDGRVPHSIITELFTDSGIGTLIRKENE
>CP011848.1|AXB68621.1|2207293_2208166_-|transcriptional-regulator
MEETNEMKDSKHLISNIQSQYTRLSKGQKLIAQYILNNYDKVAFMTACKLGETVGVSESTVVRFANALGYSGYPKLQAALQELIKNKLTTVQRVEMAHDYSDDFAILNKVLKSDIDNIRSTLEEIDERAFKEASNKLLRARKIYILGMRSSFVVAQYLGFYLDIILDNVHIIRMDMGDAFEQIVRINEEDVIVAISFPRYSKKSYQIVNYAKEKGAHVISLTDSLFAPVASLADNTLLVKSNMASFVDSLVPALSISNALAISVGMKEKEDIKQHFDDLEQIWKRYSVYE
>CP011848.1|AXB68622.1|2208559_2209138_-|rRNA-methylase
MAYAKYLTKITDINKFYLENIINEGDIVIDATMGNGYDTRYLAEKVGEKGFVYAFDIQEEAIKSTRKKLEKEGYTDRVKLIFDGHEKMNQYIKEEVSCVLFNLGYLPRAKHSIITKPDTTLKAIKLSLEMLKENGVISIAIYTGHDGGQEEKDCIYNLVNNLNQDEFNVLESKFLNQVNNPPQLILIEKKKA
>CP011848.1|AXB68623.1|2209195_2209912_-|23S-RNA-and-tRNA-pseudouridine-synthase
MRINKYIASCGIASRRKSEEIILGGRIKVNGSVVKELSFNIDEEKDIVEFDNKKVKPSENYIYIVLNKPEGYITTVKDQFNRPSVIDILKDVRERVYPIGRLDYETSGLLILTNDGDLTYKLTHPKHEIDKTYVASVKGIISDDEIRQFETGLKIEDYTTAPAKIRVTKENKEKNYSVCEITIHEGRNRQVRKMCKAINHPVLNLRRISVGKIVLKDTKVGEYRYLTEDEIKYLKSIK
>CP011848.1|AXB68624.1|2210102_2211188_+|permease
MIIILKENIKYYLIVVFIGILFFKFINTPSNFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ
>CP011848.1|AXB68625.1|2211342_2212002_-|lipoprotein
MRGRVILLISILSIFLVGCSFNKKDEINLVEQGKTYLEKHNYKKAMESLSSALEEDSTNENARAMYMQAMRMSNMTEFEELKNYEGAIKELKLIEKIKNGSSVIKEEATKKKEELTKLEKEQNEAEEQRKKKAKDTAGEDRYRVESDARKSSYSGSSKNNKYSSKNNDKKSDSNKSDNNNSSSQNQEKPNNSNPTPAPTPQDTTGGSDSGGNSQNSNNQ
>CP011848.1|AXB68626.1|2212218_2213511_-|diaminopimelate-decarboxylase
MKLHGTMTVNNDELYIGGVSCLELSKKYQTPLYVFDEALVRQNCREYIEYFKAREGKNKVAYAGKAFLPLYMCNLINEEQMCLDVVSGGELYTAYKSNFPMEKVFFHGNNKTKEEINMGLDLGVGKFVVDNFYELDLLEALCEDKGKTQEIYFRITPGIEAHTHDYIKTGQIDSKFGFALVNGDLFRAIEKLSEYKNIKLVGLHAHIGSQIFDVEPYIDTVDIMMNLVKEIKEKFNIQLTEIDLGGGVGVYYSEGDKPKTIKEFCETIITKAETSCKELGIEVPTLVIEPGRSIVANAGSTLYTVGSIKDIKDVRVYVSVDGGMTDNVRPSLYQASYECSIVNKINHEAMNHVTIAGKCCESGDILIGDINIMDIKSGDILITTSTGAYGYSMSSNYNKIPRAAVVSVFDGNDKIICKRQSYEDLLALEI
>CP011848.1|AXB68627.1|2213528_2214722_-|aspartokinase
MSIIVQKYGGSSVADTEKIKSIAENIIERRKENPQMVIVVSAMGKSTDEYITLAKELSNEPSKRELDALMSTGEMISASLLSIALNALGCKAISYNAYQLNIKTSGLHGKSQIDDINVNRIKNSLDEGNVVIVTGFQGINEDGDVTTLGRGGSDTSAVALAVKLNGKCEIYTDVDGIYFTDPRKYSKASKLDEIEYEEMLELASLGAQVMHSRSIELAQKYGVEIYVGRTCGTEKGTYIRGGKDMKLEDKVITGLATSDDDSSITIKDFKAENISSLFEDIATIGISVDMISQTAPILDKISVSFTVPKEELGECKKIVSKYTDEEHVVIDNNITKFSLVGLGMKNTSGVAAKVFKIFNENGIMIKLITTSEIRITCAINSDDKQVAIEKIAEVFNI
>CP011848.1|AXB68628.1|2215082_2215700_-|hypothetical-protein
MTNMEKEILLLISRVRCVTESQFRKIYGDQKRYNKKNFKKTLRKMCSEYTLKKYPCDVDYYNYKDLSYVYYLNGSKLFKGDDLIKALVGSELVVRINTAGCDVKRFYRNVSVDDVKYDLFIEYTDQFGNIKQVLVDVDLNNEIDISKYENLSKKIDKSTIPFFKVPNVLVVTPDNLSELNDLERYDNEYSINFIDLGLNKLFNCI
>CP011848.1|AXB68629.1|2215869_2217570_-|hypothetical-protein
MKRYLKTYGVALIIVIIYAFIKLPVLRLDFTSLFSVGIIFFVVAGILDMMLDRNERASKMAKYNFSIAIALLVYIVVVPFITSTPVLHAKSYRELLGKVTESKFTDDISPVSVNDIRLVDEDMAMKLGDKKLGEVPAIGSVSKLGKFHIQNVDGELYWVAPLVHRDIIKWITSLSGTSGYVKVSASNPQDVQLVQEIDGKPIKIVYQPEAYLHQDLQRHLYIHGIVNVGMTDFTLEINDEGRPYWVVSLYEHKIGYGGANATGIATVDAETGKINVYDVKNTPKWVDRIQPQSFVTDQIKDWGVYVNGFLNSVISEKGVLVPTEGTSLVYGNDNRSYWYTGITSSGGDESTIGFMLVDSRTKEARLYKQPGATETAAMKSAEGNVQEKNYEATFPVMYNILGQPTYVSSLKDKAGLVKRVAFVSVEDYNVLGIGEDKNEALRNYKDALESKGNDLKLDNDLKDEVLEGTVTRISPDVRGGNTNYYVTLDSNKDIIFRATSKVSSELPLTQVGDKVKISYSKEESGVIEMSEFDNLNIANFEDKKAKEKTGTDENTDSKDSENQGNV
>CP011848.1|AXB68630.1|2217966_2218530_-|hypothetical-protein
MNKVYIVTTYTGTILSYLIRNISKKLYTHVSISLNENLKPMYSFGRLNPRNPFIGGFVEENINQGLYAIRKNTVCRVYSLEVDNLQYENLYKNIKLISDYREDYYYDTMALIYLLMNIQRQSEYKYVCSNFVADMLEKSEIDILNKQAFEVTPNDFYNLSGLTLEYEGLLSEYNSRQHSYVSKIANI

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Crispr_ID: CP011848_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_11

2666414-2666571

Unclear

Consensus_repeat	Method
AGGTTTAAGATTAACTAAGTGGATTTCA	PILER-CR

2 spacers

cas3,cas5,cas7,cas6

The CRISPR arrays of CP011848_11

>merge|CP011848|11|2666414-2666571|PILER-CR
AAATCCGATTAGTTAATTTTAAACCTAATAATAAAACTTCTATTATATCTACTATATCAATATTTGAAATCCACTTAGTTAATCTTAAACATACAAAATCTCCAACTTATAATTATTTTCGCGATGTACCTGAAACCCACTTAGTTAATCTTAAACCT

>CP011848|11|7|2666414-2666571|PILER-CR
AAATCCGATTAGTTAATTTTAAACCTAA	TAATAAAACTTCTATTATATCTACTATATCAATATTTG
AAATCCACTTAGTTAATCTTAAACATAC	AAAATCTCCAACTTATAATTATTTTCGCGATGTACCTG
AAACCCACTTAGTTAATCTTAAACCT

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB69026.1\|2672482_2673220_-\|CRISPR-associated-Cas-family-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP011848.1\|AXB69015.1\|2661431_2661929_-\|sensory-protein	unknown	unknown	gnl\|CDD\|320706
CP011848.1\|AXB69024.1\|2669969_2670983_-\|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
CP011848.1\|AXB69028.1\|2674617_2675385_+\|sugar-diacid-utilization-regulator	unknown	unknown	gnl\|CDD\|225306
CP011848.1\|AXB69013.1\|2660226_2660463_-\|sporulation-protein-YqfC	unknown	unknown	gnl\|CDD\|377934
CP011848.1\|AXB69012.1\|2658870_2660214_-\|stage-IV-sporulation-protein	unknown	unknown	gnl\|CDD\|377731
CP011848.1\|AXB69019.1\|2663247_2664546_-\|radical-SAM-superfamily-protein	unknown	unknown	gnl\|CDD\|223694
CP011848.1\|AXB69014.1\|2660675_2661239_-\|sigma-54-modulation-protein	unknown	unknown	gnl\|CDD\|238308
CP011848.1\|AXB69031.1\|2678882_2680037_-\|chaperone-protein	unknown	unknown	gnl\|CDD\|236757
CP011848.1\|AXB69017.1\|2662512_2662692_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP011848.1\|AXB69022.1\|2666712_2669121_-\|ATP-dependent-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
CP011848.1\|AXB69018.1\|2662854_2663205_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
CP011848.1\|AXB69029.1\|2675572_2676946_-\|transporter	unknown	unknown	gnl\|CDD\|129794
CP011848.1\|AXB69020.1\|2664547_2665306_-\|16S-ribosomal-RNA-methyltransferase-RsmE	unknown	unknown	gnl\|CDD\|236959
CP011848.1\|AXB69021.1\|2665324_2666272_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP011848.1\|AXB69023.1\|2669147_2669954_-\|CRISPR-associated-protein,-Cas5t-family	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP011848.1\|AXB69027.1\|2673478_2674588_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
CP011848.1\|AXB69025.1\|2671002_2672478_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69030.1\|2676981_2677917_-\|glucokinase	unknown	unknown	gnl\|CDD\|224851
CP011848.1\|AXB69016.1\|2662039_2662483_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|370480

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB69026.1\|2672482_2673220_-\|CRISPR-associated-Cas-family-protein	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	5.03192e-16
CP011848.1\|AXB69015.1\|2661431_2661929_-\|sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	1.41313e-43
CP011848.1\|AXB69024.1\|2669969_2670983_-\|CRISPR-associated-autoregulator,-Cst2-family	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	4.51629e-18
CP011848.1\|AXB69028.1\|2674617_2675385_+\|sugar-diacid-utilization-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.34339e-15
CP011848.1\|AXB69013.1\|2660226_2660463_-\|sporulation-protein-YqfC	gnl\|CDD\|377934	pfam07873, YabP, YabP family. This family of proteins is involved in spore coat assembly during the process of sporulation.	1.14572e-12
CP011848.1\|AXB69012.1\|2658870_2660214_-\|stage-IV-sporulation-protein	gnl\|CDD\|377731	pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.	2.02846e-106
CP011848.1\|AXB69019.1\|2663247_2664546_-\|radical-SAM-superfamily-protein	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	3.32229e-179
CP011848.1\|AXB69014.1\|2660675_2661239_-\|sigma-54-modulation-protein	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	1.43831e-27
CP011848.1\|AXB69031.1\|2678882_2680037_-\|chaperone-protein	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
CP011848.1\|AXB69017.1\|2662512_2662692_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.30053e-12
CP011848.1\|AXB69022.1\|2666712_2669121_-\|ATP-dependent-helicase	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	7.89664e-43
CP011848.1\|AXB69018.1\|2662854_2663205_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.77543e-54
CP011848.1\|AXB69029.1\|2675572_2676946_-\|transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.4204e-34
CP011848.1\|AXB69020.1\|2664547_2665306_-\|16S-ribosomal-RNA-methyltransferase-RsmE	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	7.40285e-85
CP011848.1\|AXB69021.1\|2665324_2666272_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.76698e-110
CP011848.1\|AXB69023.1\|2669147_2669954_-\|CRISPR-associated-protein,-Cas5t-family	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.46068e-11
CP011848.1\|AXB69027.1\|2673478_2674588_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
CP011848.1\|AXB69030.1\|2676981_2677917_-\|glucokinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.00921e-65
CP011848.1\|AXB69016.1\|2662039_2662483_-\|tRNA-binding-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	3.14843e-57

>CP011848.1|AXB69021.1|2665324_2666272_-|50S-ribosomal-protein-L11-methyltransferase
MNNWIEVTIKTTTEAVEPITNILYEQGAGGAVIEDPKDFLFQKKNELDWDYVEEEVFKKNEEDDVLIKTYVSEEKNVMEFVEIIKQKVLGLKDFGIDIGEGSVSLDQVNEADWANAWKAYYKPTKVGQRVVVKPTWEDYAMQDGDLIIELDPGMAFGTGTHETTSMCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLENKVEKSVSVMHGNLTDVIKDKADVIVANIIADIIKILAKDVQNFMKEDAIFISSGIILDKVEEVKESLIENGFEIVEVQKLGEWSAIVSKLKK
>CP011848.1|AXB69020.1|2664547_2665306_-|16S-ribosomal-RNA-methyltransferase-RsmE
MDRFFVEKNNINLQDKTCTIEGEDVKHISKVLRCKLGEKLEICDKNNNEYICEIMNIDKSIVNLEILEKVDINRESELKVRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVVKVDDKKEDKKFERWERIIYEAAKQSKRGKIPKLRGVLSFKEALEDMKKNNVNICPYENERTVSIKHALKKCDSNIDSVGIFIGPEGGFSEEEIEQIQKNNCNVVSLGPRILRTETASVVASTIALYELSDLGGEK
>CP011848.1|AXB69019.1|2663247_2664546_-|radical-SAM-superfamily-protein
MKKVAFYTLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKKNPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVDDIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEVKKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQLLNLSKVNFNKFATKFIGRELDVLFEQNIEGNKYEGLTSNYIRVVVESDKNIQGQILKVKINDVKDEYVEGILL
>CP011848.1|AXB69018.1|2662854_2663205_-|histidine-triad-nucleotide-binding-protein
MDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAGQN
>CP011848.1|AXB69017.1|2662512_2662692_-|30S-ribosomal-protein-S21
MSEVRVRENETLDSALRRFKRQCAMSGIMSEVRKREHYDKPSVKRKKKAEAARRKNAKK
>CP011848.1|AXB69016.1|2662039_2662483_-|tRNA-binding-protein
MSLKQKLQEDLKSSMKNKDTVRKSVVTLIRASIKQYEVDNRVELDEDGIIDVIAKQLKQRRDALVEFEKAGREDLIKETEGEIEVLKEYLPQQLSEEELEEIVKSTISEVGATSMKDMGKIMSVIQPKVKGRADGKLINKLVKQNLQ
>CP011848.1|AXB69015.1|2661431_2661929_-|sensory-protein
MIISVKEIRNFLINIFIPLIIGYLSSILTMIISGTDISTYYLQLTKPSFAPPAFIFPIVWTILYILMGISSYLILRKGYNLPKVRDAIFYYGLQLVLNFIWSILFFGFGLRFTALIDIIIMILVSIIMISKFSKIDKRSGYINLIYLMWLVYAGFLNYFIWFINK
>CP011848.1|AXB69014.1|2660675_2661239_-|sigma-54-modulation-protein
MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKSIRFENLDFIDNSSEFDDYDYDDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFEINIVYKRKAGGYGLIEQD
>CP011848.1|AXB69013.1|2660226_2660463_-|sporulation-protein-YqfC
MLEISTDLQVNQPVITVTSNTFISIENYLSILEYEVDLIRIKTKVKTIKISGDKLSLKYITDSEIGIKGIIYNVEYVD
>CP011848.1|AXB69012.1|2658870_2660214_-|stage-IV-sporulation-protein
MISFIRGYYVIVVEGVGLEQFLNHLIRNGISVYNVTRIKNTKMEFHIDRQDIKEFKNVYRGSKFDIKVKQKTGVPFIIKRVYKHKGMWICALVSLFLLMSTSQFVTDVYIQSPEGIKKEALRNELYKVGVRPGVYKKSIDRKEVRDHMMSKFNDVAYLSINVKGTNIFVTVTKKAESLKSTDQSNYCNVIALKNGIIEKVIPRSGKSVIKSGDIVQKGDVLLNGANTKSIPEVWASTFYESTKKASYVDTVNKKTGEKKNIYTLSFYDKEFTMRKNIKYKDYVVENKEKKLSIGNYTFPIKIKTSTFYETKKVEVKRNKEELKKELSEKALKELEYIIPASARIIDVKHNFKVNKNMLEYLITVQTSENIAKIYPLSKSEAERFIKEESKPDEGEEEVPSNPEKRPLNDIRNEFDEDNKDNKDQNNSDENNSNQNSNNSQNNNSNNN
>CP011848.1|AXB69022.1|2666712_2669121_-|ATP-dependent-helicase
MKNIMQKEILAKSYNLRTNQQEQTLVEHIKDLFEVLESILELNLYSDKDVEILKICCALHDLGKINSIMQQKMEINNKISYSCSEEERKKLESDKKSLKKIARHNIFSGAFLKDILEKMNLLEEDKLYIYKSIMLHHGNYEDYMRLSTSKVQEEIYDYIEKGILEKEEFNLKDIESYINDILNVDFKFGEDVLDYDYIDKLSESMFIDSDYNNGQIDDSVLNYRKFKYILYKGMLNLIDHSASSRQKGIKFYNDFTDEEIDDMILNEIYKSQGNLEKNNIEFNTIQKRLRELSGRNVLTVAFTGSGKTAADYRKTFKRKFFLVPNKISAESFYRKNIFQNKNDLDTRSSNDYIGLLHGDINLYSENEDNGEHDFVLTLRDIDLSINFCKPCVIATVDQLLLSMFKFPGYEKIFAAVKNASITVDEVHLLEPKMFLILIYFMQFACKYLDVDFHLMTATLPKSYKEQMINKGIIFQEESNENVTDKGEIVFIESNKEEEICEGKDVKVSFIKEKEIKSIVEGALENKQKILIIKNTIDSVNRTYEFLKENLSDKYGGVDIDVLHSRFKFKDKKEKYSKILNGEGDIWISTQSVEISLDLDFNIIISDLATMDSLIQRMGRCNRNNKYEYGNFYILPSEDKIYDNKLKNTTKNILKDILKTNSIFTMGIRKTILDDYYDNSVVKNYFEENFISCDKEIKNIYGINKEIFDGLDLIFNFEPYKNIVDSKKEAAKIFRDVDVSYKIILEEDFYKEDRELQQDSIQVSGFIFNRLYYYGLISKVEGYMVLKSSSKFEYNSTVGLILK
>CP011848.1|AXB69023.1|2669147_2669954_-|CRISPR-associated-protein,-Cas5t-family
MKVLQCKLKQPTAHYRDPKVFQNEYISTLNLPSKTTIMGMITYLCDRRLNSDIDIGIIGTHHHRELEFSRGENIDFWNEYTNMRKGKDKEKFLLQGNYYDYYKEHKAQNSILNYEVLKEVELTIFISCKDDEELEFIKKKLESPCKYANLGRKEDFVIPSEKGCFVKEVELKEVMPMNTRDAIKENIKLKNTYVRVDLRDKENVETIINQGVLIALPYKYKDLEANRDDRVYEFCHYIYVDNDGIYPKNIKVNVCNVCIDTKEVFTWL
>CP011848.1|AXB69024.1|2669969_2670983_-|CRISPR-associated-autoregulator,-Cst2-family
MNEKRVKGVTLTILTESPVPLSYDQGYGNYTPIKKEQYREKIHAKTSIATITYDLRRMLHQEYGWNLSNIIFGKKGNIYPSIKQNVGCVDENGLETDVFGYLIPLKDKGSISKASPLRIIPFRSLNSYRGSTQLITNRGFLSSEFGRKYYDEKEENEVLRDENFPTSQALAIEETLSDYYVYTITLELDRIGVVEVEDGKLLLPEERKFMSKELREKAVKDILDAITVFTRNIKHSSVLLKPLAVMGGAFDKVVPFFWDDVDYNADSGEINLEGVIETIESYSLKESNTILAINDKLKISNKKELNKFNLSKYPVKEIKNLADRLEIGEDNMWYLKE
>CP011848.1|AXB69025.1|2671002_2672478_-|hypothetical-protein
MREIKAKFYRSGDIVRDIGIVYFYELLMDLKNELEKNDYKLKFTCELNRNYLSLESAEYIDPKYISDYILENQLFKVFKNGKKETLEKIFSNIDNLTYVNFIEELDKSSATEKQKEGIKKDFKNRRFPYVRNSGKYGLNTSLENMETNVKRIVDTVIKSNIEIDEIDKLDLTQYEEKDSVCNVCNINKTTKLDIDLRERKDSKYNFLFRGAEKSGFKRSGQVESNICFECEFFNLMCLLYINLKRPMVFAYTNDLRELAFLNHKIMLKRKMYSDKSFYKKLLHEKISSIRLYRFDIDTNKGIILKFDSIIEYKELLKKIELIDIIDNYNFSREPGNTRNLGKKMIDNGNLSNLKELLLDNISVLRQLTGTSREMDFVSSSYNIGLYIKLCWIVDGGEEYKMKNYMESNLIYSRVGKDLFNKMTDESRRKNFSMKVIQLLKSNDRTQLFQTIMHVLVSNGILIGEGFVEGLMQSSELELNTNVGLFIQEIMK
>CP011848.1|AXB69026.1|2672482_2673220_-|CRISPR-associated-Cas-family-protein
MSRISIFMESCNGKFPNENSMLSVSFIKNILNAENKDFAKNIFNYGEERKNNKQIKDINTAIYIPNLIRSKNELLVDGDIIFNISFYNYSMFSKLYNGILKVKELEYKGYRFKIKNIKIHKEHEIKENGVIFKTMSPIIVKNKEGKYLDVEDSNYIECLNYIANLTLESIRGSGLRKPLEFIPLNFKKRVLKEKIRGFKVREYYYINAYAGTFFLKGNMEDLNALYKMGIGYRRTENAGMVDILK
>CP011848.1|AXB69027.1|2673478_2674588_+|ABC-transporter-ATP-binding-protein
MSEVILKNISKLYSNGFNAVKNINIDIKDKEFIVLVGPSGCGKSTTLRMIAGLEEISEGELYIGDKLVNDIEPKDRDIAMVFQNYALYPHLSVYENMAFALKLRKLPKDEIDKKVKEAAKILDLLPLLNKKPKTLSGGQRQRVALGRAIVRNPKVFLMDEPLSNLDAKLRTAMRTEITKLHQQLGTTFIYVTHDQVEAMTMADRIVVMKDGVVQQIATPQDVYDYPANIFVAGFIGAPQMNFIDVILIEENDKIYAQNEHIKLKLNKEKHYDLIKDNYINNEVVIGIRPEDIHVEDTFIKSNPDTCFKSRIEIKELMGAETYAHLKLGENTITIRFDSKNRINVGDDLTLSVDNSRVHIFDKETTLAIR
>CP011848.1|AXB69028.1|2674617_2675385_+|sugar-diacid-utilization-regulator
MEELKDFLERQLNKKINIYPYENQKLDASSHLVTFNNAIYVIDFLDKNNLDNLKGNFYLIYQSHIDFEYLKNIFYNLFEDINIIQHNGFFIVNSKYNLDINVTTQNIIETETYQSTYIFYLGELDSKADFYFRLQLCSDLLPHIIKDNAENKFLNLFDLIRYKTLDLINEDNILNKLIDFNKIKSIDEELLYTGIKFINNDLNISKTSTSMFLHRNTLVYRLEKINEILGFDLKNFENAMIFYLSVKSYFLYKKI
>CP011848.1|AXB69029.1|2675572_2676946_-|transporter
MGKTNARRTLFLIAIGSGTMLNPLNSSMISLALHSIQNDFHISFTTVSWIVSAFYLASAIAQPVSGKIGDLIGRKVLFLSGLMLVILSASIVPLVQSFFILIFIRVIQAIGTSTLYPSGVALIQNNIKERQSSALAVLTIFASTTAGLGPTLGGLLLDLGGWHAIFLVNIPVVLVSICLGYFLFPKEVKEKKSIKETLKNVLSRLDIIGILLFSIAMIFILLFLLSMKESFNLEQLVFGIILMCLFIWHELRTKLPFIDIKLFVSNPKLSKVYLQFIILNFFNYILFFGLPSYFQDALHYSAKSTGLFMLFMSGIGIFISPLTGKWIDKSGTRFPLVTSSIFMFISAVLLSVVFIHIPVIGKGIILSLAGISYGVGNVALQSSMFEESPRDSIGTASGLFQTSRYLGSILATVLLGMVFEGNITSEQFQILGYVMVVLGTISFLLNFILKKELRKVE
>CP011848.1|AXB69030.1|2676981_2677917_-|glucokinase
MYYIGVDIGGTGIQAGVVDNYGKIIFRSECKTVIEKGFEGILNDIKIMIYKLLEDNKLTMSDIKSIGFGVPGFINKEGLVTCVNLKWNKKAFNKELKRRFPDAEIHGENDATVAALGEAKFGSMKGANVGVLYTLGTGVGGGIVINQKVFSGAHGLGSEIGHQIIGENYFNCNCGNNGCVETFCSATAIIKYSQKLIEEGEKSRILDLAEGNLENVNAKMVFDAYRENDLVAIKVINRFKDYLAKTFANTINSLDPEIISIGGGISKSSDIILDGIEDLVRKFVLYKTEDIATITCATLGSDAGIIGAAFL
>CP011848.1|AXB69031.1|2678882_2680037_-|chaperone-protein
MSTKRDYYEVLGISKDAEAQEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEINEAYEVLSDDTKRKTYDQFGHDGLNGQGGFGGQGGFGGQGFGGFEDMFGDIFGDMFGGSFGGGRARRRGPQRGADIRQSVTISFEEAAFGKKMSIKVNRSEECEECNGTGAKPGTSKKTCSTCNGTGQVRTVQRTPFGNIASSRPCSACNGTGEVIESPCSKCHGTGNTRKVKTIEVDIPAGIDDGQMIKLSGQGEVGEKGAPRGDLYIVVNVKSHPLFTRDGNDIYFEMPITFVQATLGDEIEVPTLDGKVKYSVPEGTQTGTVFRLKEKGIPRIRGNSRGDQYVKVVVEIPKKLNDKQKELLREFAKECGSNVHEKKKTFGQKIEDMFKKK

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Crispr_ID: CP011848_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_14

3249998-3251744

Unclear

I-A

Consensus_repeat	Method
ATTTACATACCACTTAGTTAATATAAAAC	CRISPRCasFinder
ATTTACATACCACTTAGTTAATATAAAAC	CRT
GTTTTATATTAACTAAGTGGTATGTAAAT	PILER-CR

26 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of CP011848_14

>merge|CP011848|14|3249998-3251744|CRISPRCasFinder,CRT,PILER-CR
ATTTAGATATGATTTAGTTAATATAAGGTGGATGTTTTAGTATATGCTATTGTTTATTCTACAATTTTATATACTGCTTTATTAATATAAAATAAGTTTCTAAATACTCGTTGATATTGCTAATATTCTACTTATCTACCACTTAGTTGATATAAAACCTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCTATTTACATACCACTTAGTTAATATAAAACGATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGCATTTACATACCACTTAGTTAATATAAAACGCAAAAAATGTTGATATTCCCAAAATTAATATTGATGAATTTACATACCACTTAGTTAATATAAAACATTATAGAAGTACATATATTGCTGAAAAACCTCTTGTATTTACATACCACTTAGTTAATATAAAACAGTTAGTGATATCAATATGCTAAGCAATATTTTTACAATTTACATACCACTTAGTTAATATAAAACTTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGGATTTACATACCACTTAGTTAATATAAAACTAATTTAGTTATATCCATTTGTTTAACCCAATTAGTATTTACATACCACTTAGTTAATATAAAACGTTTCATTTTGCACTATATCAAGCTTAGTATACAATGATTTACATACCACTTAGTTAATATAAAACTTTTATATTTAATTTTAAAGATTAAAGGTATAAACAAATTTACATACCACTTAGTTAATATAAAACTACTAGAATTATTAAATGAAATGAACAATAATATTGTATTTACATACCACTTAGTTAATATAAAACGATTTAAATGCAACACAAATTATAACATCTAAGAATATTTACATACCACTTAGTTAATATAAAACAAGATTGAAATTTCAACACTTTCACCTTGTATATCTATTTACATACCACTTAGTTAATATAAAACAGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACTATTTACATACCACTTAGTTAATATAAAACAAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGGATTTACATACCACTTAGTTAATATAAAACGTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGTATTTACATACCACTTAGTTAATATAAAACCTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCTATTTACATACCACTTAGTTAATATAAAACAATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTAATTTACATACCACTTAGTTAATATAAAACGTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGAATTTACATACCACTTAGTTAATATAAAACGTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGAATTTACATACCACTTAGTTAATATAAAACTATAATTGGGATGGTCAGGTTTCTGATAAGGTTAATAAATTTACATACCACTTAGTTAATATAAAACTGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTTATTTACATACCACTTAGTTAATATAAAACAACTCATGTAACAAGTATTAAGACTTGCACCTTTAAATTTACATACCACTTAGTTAATATAAAACTTCATTAATTCCTTTCATAGCACTTAAGTTAACCAAATTTACATACCACTTAGTTAATATAAAACCTTTAGTTGTTGTCGCTTTTGCTTCTACTATAGTTGCTTATTTACATACCACTTAGTTAATATAAAAC

>CP011848|14|13|3249998-3251744|CRISPRCasFinder
ATTTAGATATGATTTAGTTAATATAAGGT	GGATGTTTTAGTATATGCTATTGTTTATTCTACAA
TTTTATATACTGCTTTATTAATATAAAAT	AAGTTTCTAAATACTCGTTGATATTGCTAATATTCT
ACTTATCTACCACTTAGTTGATATAAAAC	CTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCT
ATTTACATACCACTTAGTTAATATAAAAC	GATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGC
ATTTACATACCACTTAGTTAATATAAAAC	GCAAAAAATGTTGATATTCCCAAAATTAATATTGATGA
ATTTACATACCACTTAGTTAATATAAAAC	ATTATAGAAGTACATATATTGCTGAAAAACCTCTTGT
ATTTACATACCACTTAGTTAATATAAAAC	AGTTAGTGATATCAATATGCTAAGCAATATTTTTACA
ATTTACATACCACTTAGTTAATATAAAAC	TTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGG
ATTTACATACCACTTAGTTAATATAAAAC	TAATTTAGTTATATCCATTTGTTTAACCCAATTAGT
ATTTACATACCACTTAGTTAATATAAAAC	GTTTCATTTTGCACTATATCAAGCTTAGTATACAATG
ATTTACATACCACTTAGTTAATATAAAAC	TTTTATATTTAATTTTAAAGATTAAAGGTATAAACAA
ATTTACATACCACTTAGTTAATATAAAAC	TACTAGAATTATTAAATGAAATGAACAATAATATTGT
ATTTACATACCACTTAGTTAATATAAAAC	GATTTAAATGCAACACAAATTATAACATCTAAGAAT
ATTTACATACCACTTAGTTAATATAAAAC	AAGATTGAAATTTCAACACTTTCACCTTGTATATCT
ATTTACATACCACTTAGTTAATATAAAAC	AGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACT
ATTTACATACCACTTAGTTAATATAAAAC	AAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGG
ATTTACATACCACTTAGTTAATATAAAAC	GTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGT
ATTTACATACCACTTAGTTAATATAAAAC	CTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCT
ATTTACATACCACTTAGTTAATATAAAAC	AATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTA
ATTTACATACCACTTAGTTAATATAAAAC	GTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGA
ATTTACATACCACTTAGTTAATATAAAAC	GTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGA
ATTTACATACCACTTAGTTAATATAAAAC	TATAATTGGGATGGTCAGGTTTCTGATAAGGTTAATAA
ATTTACATACCACTTAGTTAATATAAAAC	TGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTT
ATTTACATACCACTTAGTTAATATAAAAC	AACTCATGTAACAAGTATTAAGACTTGCACCTTTAA
ATTTACATACCACTTAGTTAATATAAAAC	TTCATTAATTCCTTTCATAGCACTTAAGTTAACCAA
ATTTACATACCACTTAGTTAATATAAAAC	CTTTAGTTGTTGTCGCTTTTGCTTCTACTATAGTTGCTT
ATTTACATACCACTTAGTTAATATAAAAC

>CP011848|14|7|3250127-3251744|CRT
ACTTATCTACCACTTAGTTGATATAAAAC	CTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCT
ATTTACATACCACTTAGTTAATATAAAAC	GATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGC
ATTTACATACCACTTAGTTAATATAAAAC	GCAAAAAATGTTGATATTCCCAAAATTAATATTGATGA
ATTTACATACCACTTAGTTAATATAAAAC	ATTATAGAAGTACATATATTGCTGAAAAACCTCTTGT
ATTTACATACCACTTAGTTAATATAAAAC	AGTTAGTGATATCAATATGCTAAGCAATATTTTTACA
ATTTACATACCACTTAGTTAATATAAAAC	TTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGG
ATTTACATACCACTTAGTTAATATAAAAC	TAATTTAGTTATATCCATTTGTTTAACCCAATTAGT
ATTTACATACCACTTAGTTAATATAAAAC	GTTTCATTTTGCACTATATCAAGCTTAGTATACAATG
ATTTACATACCACTTAGTTAATATAAAAC	TTTTATATTTAATTTTAAAGATTAAAGGTATAAACAA
ATTTACATACCACTTAGTTAATATAAAAC	TACTAGAATTATTAAATGAAATGAACAATAATATTGT
ATTTACATACCACTTAGTTAATATAAAAC	GATTTAAATGCAACACAAATTATAACATCTAAGAAT
ATTTACATACCACTTAGTTAATATAAAAC	AAGATTGAAATTTCAACACTTTCACCTTGTATATCT
ATTTACATACCACTTAGTTAATATAAAAC	AGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACT
ATTTACATACCACTTAGTTAATATAAAAC	AAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGG
ATTTACATACCACTTAGTTAATATAAAAC	GTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGT
ATTTACATACCACTTAGTTAATATAAAAC	CTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCT
ATTTACATACCACTTAGTTAATATAAAAC	AATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTA
ATTTACATACCACTTAGTTAATATAAAAC	GTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGA
ATTTACATACCACTTAGTTAATATAAAAC	GTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGA
ATTTACATACCACTTAGTTAATATAAAAC	TATAATTGGGATGGTCAGGTTTCTGATAAGGTTAATAA
ATTTACATACCACTTAGTTAATATAAAAC	TGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTT
ATTTACATACCACTTAGTTAATATAAAAC	AACTCATGTAACAAGTATTAAGACTTGCACCTTTAA
ATTTACATACCACTTAGTTAATATAAAAC	TTCATTAATTCCTTTCATAGCACTTAAGTTAACCAA
ATTTACATACCACTTAGTTAATATAAAAC	CTTTAGTTGTTGTCGCTTTTGCTTCTACTATAGTTGCTT
ATTTACATACCACTTAGTTAATATAAAAC

>CP011848|14|8|3250193-3251744|PILER-CR
ATTTACATACCACTTAGTTAATATAAAAC	GATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGC
ATTTACATACCACTTAGTTAATATAAAAC	GCAAAAAATGTTGATATTCCCAAAATTAATATTGATGA
ATTTACATACCACTTAGTTAATATAAAAC	ATTATAGAAGTACATATATTGCTGAAAAACCTCTTGT
ATTTACATACCACTTAGTTAATATAAAAC	AGTTAGTGATATCAATATGCTAAGCAATATTTTTACA
ATTTACATACCACTTAGTTAATATAAAAC	TTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGG
ATTTACATACCACTTAGTTAATATAAAAC	TAATTTAGTTATATCCATTTGTTTAACCCAATTAGT
ATTTACATACCACTTAGTTAATATAAAAC	GTTTCATTTTGCACTATATCAAGCTTAGTATACAATG
ATTTACATACCACTTAGTTAATATAAAAC	TTTTATATTTAATTTTAAAGATTAAAGGTATAAACAA
ATTTACATACCACTTAGTTAATATAAAAC	TACTAGAATTATTAAATGAAATGAACAATAATATTGT
ATTTACATACCACTTAGTTAATATAAAAC	GATTTAAATGCAACACAAATTATAACATCTAAGAAT
ATTTACATACCACTTAGTTAATATAAAAC	AAGATTGAAATTTCAACACTTTCACCTTGTATATCT
ATTTACATACCACTTAGTTAATATAAAAC	AGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACT
ATTTACATACCACTTAGTTAATATAAAAC	AAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGG
ATTTACATACCACTTAGTTAATATAAAAC	GTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGT
ATTTACATACCACTTAGTTAATATAAAAC	CTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCT
ATTTACATACCACTTAGTTAATATAAAAC	AATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTA
ATTTACATACCACTTAGTTAATATAAAAC	GTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGA
ATTTACATACCACTTAGTTAATATAAAAC	GTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGA
ATTTACATACCACTTAGTTAATATAAAAC	TATAATTGGGATGGTCAGGTTTCTGATAAGGTTAATAA
ATTTACATACCACTTAGTTAATATAAAAC	TGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTT
ATTTACATACCACTTAGTTAATATAAAAC	AACTCATGTAACAAGTATTAAGACTTGCACCTTTAA
ATTTACATACCACTTAGTTAATATAAAAC	TTCATTAATTCCTTTCATAGCACTTAAGTTAACCAA
ATTTACATACCACTTAGTTAATATAAAAC	CTTTAGTTGTTGTCGCTTTTGCTTCTACTATAGTTGCTT
ATTTACATACCACTTAGTTAATATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB69488.1\|3244841_3246233_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341288
CP011848.1\|AXB69499.1\|3257696_3259574_-\|CRISPR-associated-protein-Cas8a1/Cst1,-subtype-I-B/TNEAP	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
CP011848.1\|AXB69496.1\|3253745_3256067_-\|CRISPR-associated-helicase,-Cas3-family	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
CP011848.1\|AXB69489.1\|3246236_3247373_-\|thiolase	unknown	unknown	gnl\|CDD\|238383
CP011848.1\|AXB69487.1\|3243890_3244766_-\|dipicolinate-synthase-subunit-A	unknown	unknown	gnl\|CDD\|181371
CP011848.1\|AXB69500.1\|3259579_3260317_-\|CRISPR-associated-Cas-family-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP011848.1\|AXB69483.1\|3237236_3239456_-\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP011848.1\|AXB69502.1\|3261590_3263507_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
CP011848.1\|AXB69486.1\|3243297_3243888_-\|dipicolinate-synthase-subunit-B	unknown	unknown	gnl\|CDD\|181370
CP011848.1\|AXB69501.1\|3260394_3261282_-\|putative-transcriptional-regulator	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP011848.1\|AXB69491.1\|3248273_3249053_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69495.1\|3253179_3253749_-\|CRISPR-associated-Cas4-family-protein	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP011848.1\|AXB69494.1\|3252196_3253177_-\|maturase-related-protein	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP011848.1\|AXB69490.1\|3247404_3247950_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|376871
CP011848.1\|AXB69498.1\|3256780_3257695_-\|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
CP011848.1\|AXB69484.1\|3239731_3242386_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
CP011848.1\|AXB69485.1\|3242889_3243090_+\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69492.1\|3249508_3249937_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|236715
CP011848.1\|AXB69497.1\|3256077_3256779_-\|CRISPR-associated-protein,-Cas5t-family	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP011848.1\|AXB69493.1\|3251927_3252194_-\|CRISPR-associated-Cas2-family-protein	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB69488.1\|3244841_3246233_-\|AMP-binding-protein	gnl\|CDD\|341288	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA. This family of acyl-CoA ligases includes Bacillus subtilis YhfT, as well as long-chain fatty acid-CoA ligase VraA, all of which are as yet to be characterized. These proteins belong to the adenylate-forming enzymes which catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain	3.59586e-143
CP011848.1\|AXB69499.1\|3257696_3259574_-\|CRISPR-associated-protein-Cas8a1/Cst1,-subtype-I-B/TNEAP	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	1.19691e-23
CP011848.1\|AXB69496.1\|3253745_3256067_-\|CRISPR-associated-helicase,-Cas3-family	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	5.16278e-56
CP011848.1\|AXB69489.1\|3246236_3247373_-\|thiolase	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	2.05258e-109
CP011848.1\|AXB69487.1\|3243890_3244766_-\|dipicolinate-synthase-subunit-A	gnl\|CDD\|181371	PRK08306, PRK08306, dipicolinate synthase subunit DpsA.	2.53081e-132
CP011848.1\|AXB69500.1\|3259579_3260317_-\|CRISPR-associated-Cas-family-protein	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	4.93502e-20
CP011848.1\|AXB69495.1\|3253179_3253749_-\|CRISPR-associated-Cas4-family-protein	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.92827e-61
CP011848.1\|AXB69502.1\|3261590_3263507_-\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	8.95698e-09
CP011848.1\|AXB69486.1\|3243297_3243888_-\|dipicolinate-synthase-subunit-B	gnl\|CDD\|181370	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed.	6.40655e-126
CP011848.1\|AXB69501.1\|3260394_3261282_-\|putative-transcriptional-regulator	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	5.7064e-40
CP011848.1\|AXB69483.1\|3237236_3239456_-\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.79366e-107
CP011848.1\|AXB69494.1\|3252196_3253177_-\|maturase-related-protein	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.04741e-174
CP011848.1\|AXB69490.1\|3247404_3247950_-\|biotin-synthase	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	2.43536e-36
CP011848.1\|AXB69498.1\|3256780_3257695_-\|CRISPR-associated-autoregulator,-Cst2-family	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.761e-53
CP011848.1\|AXB69492.1\|3249508_3249937_-\|acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	2.36859e-47
CP011848.1\|AXB69484.1\|3239731_3242386_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
CP011848.1\|AXB69497.1\|3256077_3256779_-\|CRISPR-associated-protein,-Cas5t-family	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.28951e-66
CP011848.1\|AXB69493.1\|3251927_3252194_-\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.14416e-27

>CP011848.1|AXB69492.1|3249508_3249937_-|acetyltransferase
MIKKLNNKDINKIMEIWEKSTIKAHDFISKEYWQNNYNTVKNEYIPISDTFVYDDGDEIKGFISIIDKSFIGALFIEPKYQNLGIGGKLLDYATKKYKSLSLAVYKDNKKAVVFYNKKGFNIVKEQVNEDSGFKEYIMEYSK
>CP011848.1|AXB69491.1|3248273_3249053_+|hypothetical-protein
MKVNENNINNIDEELDELSRKVYLESPDFWISISDKIIDKVFDEMLLFFAVKYNYFNIVCFAIENNYLDLNMPSKNKKYTNIMEHLLDTSKQNEDKKIYNYLLSLNKGNNLDERPILDELNCNISSDTFEKKDIYLPKYLCPSCNSNIFDTGYKVSNDITYKFSSKEAEPIEMSSEVSSIRCCNCDELLEDITLNKLYNLCKIQNCNNCGSNLTKVGIIAKKKMNFDENTEKFKDVSTSYCCGNCDSEINLSQREHFKI
>CP011848.1|AXB69490.1|3247404_3247950_-|biotin-synthase
MKNTKVNIQDLTKMSICVALLCISSYIYIPLPFTPAGVTAQTIMINLIALILTPRQAFSTVGVYIMIGLIGIPVFGGGTSGIGKLLSPTGGFYFGFLFAALIISLLKGRNNDIKRYILITIFVGMPIIYFMGTVFMCYFNQMTVEAALFAAVVPFLIGDTIKSVIASFLGTKLNNVLRRNL
>CP011848.1|AXB69489.1|3246236_3247373_-|thiolase
MKEVFILGGLRSHIGLKNGIFQFVQPELLGASVLKDLIKKYEIDKIDEIICGNAVGTGGNIARLMTLTAGVSNEVPAFTVDMQCASAMMSIDIAFSKVKSGQCNLIIAGGFESSSLQPMRTYHKNDKRYNTNNPNYTVAQFSPDDNSQNSMLEGAERVAELYQIERADLDFWVKESHKRAKEAREEKILEDIISPINNSTYDEGIRDKMSQRLLDRMPPILGKETITNAANSCLINDGASFIIICSKKYLEHVKKKPKTKIINTCTIGTDATLSPTSAIQAMDKLLEIESLNYLDVSAVEFNEAFAVIDVLFQRKYPELIERYNIFGGALAYGHPYGASGAIITLHLLKALEKTKGRYGICSIAAAGGLGSALLLERV
>CP011848.1|AXB69488.1|3244841_3246233_-|AMP-binding-protein
MNYYELLRIKKERHKNKNFLIIDGEKYTYENILSYSEQLGKQISLGENISILIYSKNIMFQLISFFAINYSKNIPIICHYNLSKKVLDDILLKNNISIIISDESMDVIDLYDDNNNEVAKKVNFSIFNPKFNLYMYQYKNLINYLDKSICMGALSSGSTSVPKVLYRTYESWAGFFPIQNGIFNISGESILFVNGTLSFTGNLNSIMSVLYEGGSIVISSGLNCKSWIRTIKQYNVTNIYLIPTKLQLLVKHLKEPVLKVVSIFTGSQLLFEYTARNLKKYMPKSEIILYYGASELNYITYLCYDELIEKPLSVGRPFPGIDIYIRGGKIFVNTEYAVYNATKPYSVNDIGYYDNDGYLIFEGRSDDIVNIGGFKVSSAKIENEVKKIPQIEDAIVLPYSDTIRGNQIVLFVITIDKITKKDLLIKMKDNLMKNEIPKKIIFLNSFPYTSSEKIDRLALLKML
>CP011848.1|AXB69487.1|3243890_3244766_-|dipicolinate-synthase-subunit-A
MSNQYDITVIGGDLRQVYMVKKLINKGYSVVTYGISNEIINGIVGKSTSLAEALSKSSIILCPIPFTKNQVNIENTDDCLDATIDNLLINLSPNQILFGGNIPTKVCKFCEQHSIQIYDFMKMNDVAILNAVATAEGAIAEAIKRSIINIHQSNCLVLGYGRCAQILAKKLYALDANVCVGARNNDARSTANAFGYSSISLSQLDEKLLQFDYIFNTIPECILTKERLEKVSQEVTIIDIASSPGGVDYSVVKEVGINATLCLGLPGKYSPKTSGEILVNAIENIINERRD
>CP011848.1|AXB69486.1|3243297_3243888_-|dipicolinate-synthase-subunit-B
MRLEGLTIGVGFTGSFCTYDKIFIELENLVKEGANVHTIFSDVSQNIDCRFGNSEEFMKKAYELTGNKPIVTIEEAEPFGPKGIADIIIIAPCTGNTAAKLANGITDSPVLMAAKGHLRNDKPLVISISTNDALSFNFKNIGILLNSKNIYFVPFGQDNCKAKPNSMIAHTELIIPTIELALENKQLQPVIKSPHQ
>CP011848.1|AXB69485.1|3242889_3243090_+|hypothetical-protein
MKKLKTISIFSLIISVILTIGGIGIVTYYVDNLFIRGLSVFVLIMSSSFVSTTVRLIFEESKRYKF
>CP011848.1|AXB69484.1|3239731_3242386_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAHKEQVIIENKKENEVMSVGLDTVNNVESLVKKLAKIREAQKIFATYTQEQVDKIFLAASLAANKQRVPLAIMAQKETGMGIAEDKVIKNHYASEYIYNAYKETKTCGVIEKDEAFGMTKIAEPIGVIAAVVPTTNPTSTAIFKALLALKTRNGIIFSPHPRAKNSTIEAAKVVLEAAVLAGAPEGIIGWIDEPSLELTTTVMKEVDLTLATGGPGMVKSAYSSGKPAIGVGAGNTPAIIDESADIKTAVNSILVSKTFDNGMICASEQSVIVLENIYNEVKKEFKERGAYLLDKDETEKIRNIILVNGGLNSKIVGQTACTIAKLAGFEVPVDTKVLIGEVESVEIEEAFAHEKLSPVLAMYKASDFDNAVRKAEKLVEDGGFGHTSSLYIDDVNQREKLDKFTSAMKTCRILINTPSSQGGIGDLYNFKLAPSLTLGCGSWGGNSVSENVGVKHLLNIKTVAERRENMLWFRSPGKVYFKKGCLGVALKELKDVMNKKRAFIVTDTFLYNNGYTKAVTDLLDEMNIKHTTFFEVEPDPTLECAKIGAKAMREFNPDVIISIGGGSAMDAGKIMWTLYEHPDVDFQDLAMRFMDIRKRVYTFPKMGEKANFVAIPTSAGTGSEVTPFAVITDQDTGVKYPLADYELMPNMAIVDSDMMMNMPKSLTSASGIDALTHALEAYVSMLATDYTNGLALQAIKSIFEYLPRAYDNGAKDPEAREKMANASTMAGMAFANAFLGVCHSMAHKLGAFHHVPHGVANALLITEVMKFNSSDAPKKMGAFSQYKYPEALKRYAEIASFLGLKGNSDEEKFQSLLVAIEDLKLKVGIPKSIKEFGVEEPKFMDSIDEMVIQAFDDQCTGANPRYPLMNEIKDMYLNSYYGR
>CP011848.1|AXB69483.1|3237236_3239456_-|signaling-protein
MTGRNKSFTLITILFLTSLFLTMGYIYIEDTKHLLMSEAKIHIKEVAVQGSQLAQRQIEKDLDVLNIFSNYYALNQDIPNEEKMKNLLDEMENQKFYTMAIVDINGNAENTKGDKFSVKDREFFKNSIKGKKYVSSPYVDEVNKSIKKITISVPLLNNDKVVGVLYCTYNINTLMKLINVSFYENNSISYVVRNDGTIILHPQEDSLSKNIYKLLKQDNDIREINRLKKELQENKTGATVLNMLEERRYLGYATMDNGNSENNYIKDWNLIFSIPETVVFSNSEQIINRAIYAVLFIILIFIAIIFYIIYIKKSNEKEILSLAYEDKVTHIGNQNKFYRECSKYLLDKPSLNYIIVYFDINNFKMINDTFGYEFGDNLLITIAKALKEELTEGEVYARLSSDYFAIFCDYKNGKNKRIRKIDSIRNNIESNLSIVFEISLCVGIYFVEEGEVDIQKAVNKANMARSVAKGKNINYAIYNEDVRNKLSEESMILDDIKIALVKNQFEVYYQPKFSLVTGEMIGSEALIRWNHPEHGFISPAVFIPIAEKSKLILKIGRFVFERVCNDLSEWKKQGKKIVPVSINLSRVELYQPDIVKFINKTIQMYNLSSDLIEIEITETVAINELNILKNVLNELRKYGFSISMDDFGTGYSSISCLRDMPIDILKLDKSFLNGIEHDERSRNIAKSIVSLAKSLDLVVIIEGVESKEQAELMKQFGCDLVQGFYFARPMPAKNFLDLL
>CP011848.1|AXB69493.1|3251927_3252194_-|CRISPR-associated-Cas2-family-protein
MFVIVTYDIVEARSLNRIRRILRKYLTWTQNSVFEGNITDGKLHKCISEIENIIDNSEDSIYVYEIKNPNSIKKKCYGIDKYSDEMFI
>CP011848.1|AXB69494.1|3252196_3253177_-|maturase-related-protein
MYKDYYIISNGNIKRKENTIYYYNLEGEKKILPVEQVDDIHIYGEVDLNTKLINYISKYGVMLHFYNYYGYYSGTYYPRKKNVSGFSLVCQSACYLDKNERLYLAKSFVESASYHILRNMRYYKVDESLIDTIKDELNDLNDVKEISELMGKEGRIRKTYYKSFNQILKDDFEFYKREKRPPKDPVNTLMSFGNSIMYTNVLSEIYKTQLDPTISFLHEPSTKRFSLSLDIAEIFKPIIVDTIIFSLINNKRINKNDFEYQDKICYLSEKGKKKFLQEFENKMQTTIKHRNLNRKVSYRMFIRLECYKLIKHFINDERYKVLKVWW
>CP011848.1|AXB69495.1|3253179_3253749_-|CRISPR-associated-Cas4-family-protein
MIFILTMWLKFTKEGDFVPIDLEVLKVQGVKINYYYVCKRKLWLFSKGITMEQNSSRVLSGKIVHEDSYKRMKNKEMLIDDILKLDIIKDEYVKEVKISSKMKEADEMQLYYYLYYLKNSMGIEKKGTINYVKEKKQEELILTEEKEKIIENTLININEINMQLSPPKIEKKHYCTKCAYYEFCFVKEE
>CP011848.1|AXB69496.1|3253745_3256067_-|CRISPR-associated-helicase,-Cas3-family
MLYAKSNPVETLREHTDELLKQMNVLRESYGKNINSLDFLEEEIFWQLLDFVIEFHDIGKAFSPFQELIKSRMDTKINEPKIVTHLENNVGHNYLSPAFIDYSYIDRKKNKELRAVLNQVIVYHHERDIFIDKDFKNLIQKILDEDLINKVYELQREFKVRYPIKTEKLSKVYLQSVEKRIDKNHKYYNLYIMLKGILHRLDHSASAHEVVECNNVINIGEQTENYLMKEFGSLREAQSFAKSNRNKNIILIASTGMGKTETALIWIDKDKAFFTLPLRVSINALFDRAKNIIGVGEANDTFLGLLHSTAIDYLEESNQENSSEIVDLAKLLSCKLTFSTIDQIFKFPFLYRGYEKVYSTLAYSKVVIDEIQAYSPEIAAVLVKGIEMIHKIGGRFMIMTATMPTIYIDELKKRGVMNSNLADLTCNTEKIRHCVSIVENSIDENLGKIIQSGMNKKVLVIVNTVKSAVEKYELIEEIVKPKGIDVNLNLLHSMYIQEDRAKLEKYIKEFADSDSNGIWITTQLVEASLDIDFDELHTENSTLDSLFQRFGRCYRSREYEENSPNIFIYTEKATGIGSIYDKDIVEKGLELLKTFINGKECVKMKEKYKVEMVKILYSKESLEGTAFEKRFTSALNILDTITPYSLGSKDAQNILRNIEGYTVIPEDIYNKIEETLIKDYEELGQELINAYSNDDRQLINKIKSKRKKARREIIKKTVNLPIYKAKQNVIDIQVKGLEDLKILLYKYDIHENKHTKQIFGKGVLISNEIDQFI
>CP011848.1|AXB69497.1|3256077_3256779_-|CRISPR-associated-protein,-Cas5t-family
MKVLKLDLFQETACYKKPFAMKITETYPLPPYSTINGLIHKILNATEYIPFNISVQGTYESIFNNYQTTYFYKKDSITSMPMNSHMLLNVNLIIHIGGDFDLLEEIYDSLLNYDEHLSLGRKEDLVRINDIRFVEVNKFEVDEDIQLDDYENYKLSECNIRMPIYIPKTSLQDTDIDGISYRLNNYYDNNAVEDKKRVWNKVDSYYVEDGNTISIGDILLDNEGDLLYFNNIN
>CP011848.1|AXB69498.1|3256780_3257695_-|CRISPR-associated-autoregulator,-Cst2-family
MKRGLTFTVIAQAQSLNYGEGIGNISELKKLSRDDGNIYTFASRQCLRYDIVRLAAELFNWNLQVVDKEKGTIQFKDNISIRESEEMDLFGYMKTNKKDEKDKKGGSLTREATVRLSNAISLEPYRSDMDFLNNKGLADRIGEHPNLANIEQHLSYYTYTVTIDLSKIGKDGDIELDNKEKCRRVVEFLEIIKVLNRNIRGRQENLSPLFVVGGVYEIANPFFLGRIKLKGDKNGFKINKQAIEEVIQGTFLGKDLKEFTYVGMVDGVFINKEEFKGLFEDNFLSVDKFFGQLVKEVKEYYGVN
>CP011848.1|AXB69499.1|3257696_3259574_-|CRISPR-associated-protein-Cas8a1/Cst1,-subtype-I-B/TNEAP
MKLRVYRGDWFFNMGIVGFLNIIKKADKQAEIFIMEDYIEFDSLFLENFHEYYFNYFMDEYDVSKRIKKNIDYSINFIKSKPDRIKDGIKKIKDSVKQQNDKIKKFDEEKFNLIKEKLDSMSKIKSYDEFDSLEALVDETIDIFKIKSINDRLTANLYKYVVQDNYFGQVSFFNVAKAKLDLDGLKQIMFNDYLRQIIYFGELADLLEENDYDKLKNYLNDRLNSIAKDINEKKVSKSSINTIEKIMKEINKNFIKKNKSIEDIKEYMDSLEVCEMCGLYKGILDEYSESNFAPLGVSTNNARNMFWNQAYVPSICDICKLILFCTPAGATYTRKNYLINEENEFYLFVNMDTSINELFERNNSLKAQKSEYSDSKDENPFNQLIKSIVEENTLKSEWQLRNILFVEFKASIDSKKCKINYFNIPTYLAKFFTDKYANKKIQSIYDYKLKSNVLDLLLKNRDLKHLTNNILRNKVKNDMESNNKSNISGIDCFRVVQLRALINSYKKGVYKMDSKNLEKNDEKLRIIYYLGCDIHDYFVNKNSKNKIDGVSYKLLNSVKVGNKSDFMDTIIRVFMSAEKQIPAFILDIEIEKDLDFESIGHAFISGLISGKYEGKDKLPNEKEEK
>CP011848.1|AXB69500.1|3259579_3260317_-|CRISPR-associated-Cas-family-protein
MKMKIEFSTGCIPISYNSLFMSIIKEAIRKSNEDYYKNMYYYKEKNNKKTKNFTFSVYIKKYSIEGDNFIIEDKVILNISTPDLELGFHIYNGLMTSKKCLYKAYELTRIRIDLSREKKVTEERVLFNALSPICVKSKEGKFLEITDDRYIEELNYITNEVVKNYRGNGLKRKLEFENIGLKKIVVKESLREFKKITGKEYQYINGYKGKFILKGDIDDLNLIYNLGIGFRRAQGFGDVDILEWR
>CP011848.1|AXB69501.1|3260394_3261282_-|putative-transcriptional-regulator
MKCKELSEELEVSERQIKSYKMYLEQAGIFINSTPGIYGGYEIDKCNSISLIKLLDSEVSILDMINSQLEYNNDIYKNEFNNIVEKIKAVLNTGEKSDTYMDYFTVQAQRNCDYKSEKNKCNEIIRAYTTKHKFWIEYYSLNSGNSERIVHPYGLFNYKSDTYMVAFCEKRFKFIDFKLCRIKDYKVLEEKYNVDKSFSWDEYSKNSIGIYKGEEINVVIKISHPFSIIIKEKVWVNNQQIIEYDDKSIMFKAKMRGYEEIKSWILSMGAYVEVVEPDRLRNDILSEIEKMKKIY
>CP011848.1|AXB69502.1|3261590_3263507_-|ABC-transporter-permease
MNIKQFAINNISRNIKAYLGYLASIVISSSLLFSFIMFTSHPDLDVSQFPDYLKEGLKMSKIIAYLFLFFFVFYSVSVFLKSRYKEFGILYITGISKRQVMKLIFIENMIINIVSSVIGIIIGLIFAKIFLVVMSTFLELSPLKFYIPFNAILSTLIYFMILAVLTSIFTYFIVKENQVLKLLKGTKTPKPEPKTSLMLAILSICLFIIAYYNAITSTDQYTTYLRLVPVTSLTIVATYLFFSQFSVFFMKKLKLNKRFYRKNTNMLWISNLIYKVKDNARIFFLITITSAVAFTAIGTVYSFWKDVERQINLIYPNTIYYSTMTLHNDPKKPDSKEKDKERMMFIENNLKKENVDYTRTNGEFKTVFPKKSDFNVRIMKESKYLEITETIGVKPISFEDNECISLLSSSLPGNNNVKENIIVGNRGLKVAKQVEECVMPAYYKNMYVVKDNFYDSIESKFIVDRFTAFEVEDSSKTIEICREFENKFNNESGMQPYLFFSKELMIGTGKLIYSTFIFLAIFIGLIFFVTTSSFLYNKFYMDCQVDKKKYEQLNKLGMTYNEIKKASTIEIGIVFLFPYVVAVIHSIFALTALKNSFDIEVASSAVLVMGSLFLVQIVYFLIVRNNYLKEIRLNLVNF

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Crispr_ID: CP011848_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011848_15

3497132-3497754

Unclear

Consensus_repeat	Method
ATTTATAACTAACTTAGTGTAATTTAAAC	CRISPRCasFinder
ATTTATAACTAACTTAGTGTAATTTAAAC	CRT
ATTTATAACTAACTTAGTGTAATTTAAAC	PILER-CR

9 spacers

cas3,cas7,cas6,cas5

The CRISPR arrays of CP011848_15

>merge|CP011848|15|3497132-3497754|CRISPRCasFinder,CRT,PILER-CR
ATTTACAACTAATTTAGTGTAATCTAAACTTGTAGTGCCTAGTCACAACTCTCACCCCTTCAATAATTTATAACTAACTTAGTGTAATTTAAACCTCTCTACTAAAATTACTTCCACATATAGCTACAGAATTTATAACTAACTTAGTGTAATTTAAACTGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCTATTTATAACTAACTTAGTGTAATTTAAACATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTACATTTATAACTAACTTAGTGTAATTTAAACTGGGATGGATTTTGAAGCTTCTATGTCAAATGTACAATTTATAACTAACTTAGTGTAATTTAAACGAAACCTCTCTTTAAAATTATTCATAGAATTTATAAAATTTATAACTAATTTAGTGTAATTTAAACATTGTTGCTAGAAAACATTAAAATACATTACACATAATTTATAACTAACTTAGTGTAATTTAAACGGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAAATTTATAACTAACTTAGTGTAATTTAAACGGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAATATTTATAACTAACTTAGTGTAATTTAAAC

>CP011848|15|14|3497132-3497754|CRISPRCasFinder
ATTTACAACTAATTTAGTGTAATCTAAAC	TTGTAGTGCCTAGTCACAACTCTCACCCCTTCAATA
ATTTATAACTAACTTAGTGTAATTTAAAC	CTCTCTACTAAAATTACTTCCACATATAGCTACAGA
ATTTATAACTAACTTAGTGTAATTTAAAC	TGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCT
ATTTATAACTAACTTAGTGTAATTTAAAC	ATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTAC
ATTTATAACTAACTTAGTGTAATTTAAAC	TGGGATGGATTTTGAAGCTTCTATGTCAAATGTACA
ATTTATAACTAACTTAGTGTAATTTAAAC	GAAACCTCTCTTTAAAATTATTCATAGAATTTATAAA
ATTTATAACTAATTTAGTGTAATTTAAAC	ATTGTTGCTAGAAAACATTAAAATACATTACACATA
ATTTATAACTAACTTAGTGTAATTTAAAC	GGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAA
ATTTATAACTAACTTAGTGTAATTTAAAC	GGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAAT
ATTTATAACTAACTTAGTGTAATTTAAAC

>CP011848|15|8|3497132-3497754|CRT
ATTTACAACTAATTTAGTGTAATCTAAAC	TTGTAGTGCCTAGTCACAACTCTCACCCCTTCAATA
ATTTATAACTAACTTAGTGTAATTTAAAC	CTCTCTACTAAAATTACTTCCACATATAGCTACAGA
ATTTATAACTAACTTAGTGTAATTTAAAC	TGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCT
ATTTATAACTAACTTAGTGTAATTTAAAC	ATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTAC
ATTTATAACTAACTTAGTGTAATTTAAAC	TGGGATGGATTTTGAAGCTTCTATGTCAAATGTACA
ATTTATAACTAACTTAGTGTAATTTAAAC	GAAACCTCTCTTTAAAATTATTCATAGAATTTATAAA
ATTTATAACTAATTTAGTGTAATTTAAAC	ATTGTTGCTAGAAAACATTAAAATACATTACACATA
ATTTATAACTAACTTAGTGTAATTTAAAC	GGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAA
ATTTATAACTAACTTAGTGTAATTTAAAC	GGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAAT
ATTTATAACTAACTTAGTGTAATTTAAAC

>CP011848|15|9|3497197-3497754|PILER-CR
ATTTATAACTAACTTAGTGTAATTTAAAC	CTCTCTACTAAAATTACTTCCACATATAGCTACAGA
ATTTATAACTAACTTAGTGTAATTTAAAC	TGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCT
ATTTATAACTAACTTAGTGTAATTTAAAC	ATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTAC
ATTTATAACTAACTTAGTGTAATTTAAAC	TGGGATGGATTTTGAAGCTTCTATGTCAAATGTACA
ATTTATAACTAACTTAGTGTAATTTAAAC	GAAACCTCTCTTTAAAATTATTCATAGAATTTATAAA
ATTTATAACTAATTTAGTGTAATTTAAAC	ATTGTTGCTAGAAAACATTAAAATACATTACACATA
ATTTATAACTAACTTAGTGTAATTTAAAC	GGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAA
ATTTATAACTAACTTAGTGTAATTTAAAC	GGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAAT
ATTTATAACTAACTTAGTGTAATTTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011848.1\|AXB69682.1\|3490615_3491005_+\|integrase,-catalytic-region	unknown	unknown	gnl\|CDD\|222853
CP011848.1\|AXB69691.1\|3501093_3502260_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69679.1\|3487085_3488705_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69693.1\|3503016_3503664_-\|CRISPR-associated-protein-cas5-family-protein	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
CP011848.1\|AXB69681.1\|3490313_3490514_+\|transposase	unknown	unknown	gnl\|CDD\|225511
CP011848.1\|AXB69686.1\|3495283_3495619_-\|transposase,-is4	unknown	unknown	gnl\|CDD\|372705
CP011848.1\|AXB69683.1\|3491446_3492739_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377008
CP011848.1\|AXB69690.1\|3500002_3501073_-\|CRISPR-associated-autoregulator	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP011848.1\|AXB69685.1\|3494890_3495220_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69692.1\|3502261_3503026_-\|CRISPR-associated-protein-cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
CP011848.1\|AXB69687.1\|3495865_3496312_-\|transposase	unknown	unknown	gnl\|CDD\|226192
CP011848.1\|AXB69696.1\|3506065_3507301_-\|phage-related-replicative-helicase	unknown	unknown	gnl\|CDD\|273206
CP011848.1\|AXB69678.1\|3486339_3487068_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69684.1\|3492738_3493941_-\|frg-domain-containing-protein	unknown	unknown	gnl\|CDD\|378073
CP011848.1\|AXB69689.1\|3498006_3499992_-\|CRISPR-associated-helicase-cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
CP011848.1\|AXB69680.1\|3488704_3489715_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370769
CP011848.1\|AXB69695.1\|3505543_3505816_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69694.1\|3504143_3505271_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|225724
CP011848.1\|AXB69698.1\|3508177_3508492_-\|hypothetical-protein	unknown	unknown	unknown
CP011848.1\|AXB69697.1\|3507412_3508156_-\|replication-initiator-A-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011848.1\|AXB69682.1\|3490615_3491005_+\|integrase,-catalytic-region	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.64393e-16
CP011848.1\|AXB69693.1\|3503016_3503664_-\|CRISPR-associated-protein-cas5-family-protein	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	3.817e-14
CP011848.1\|AXB69681.1\|3490313_3490514_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00649627
CP011848.1\|AXB69686.1\|3495283_3495619_-\|transposase,-is4	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.70562e-12
CP011848.1\|AXB69683.1\|3491446_3492739_-\|hypothetical-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	2.41897e-07
CP011848.1\|AXB69680.1\|3488704_3489715_-\|hypothetical-protein	gnl\|CDD\|370769	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220). This domain, found in various hypothetical bacterial proteins, has no known function. The family represents just the C-terminus.	3.30625e-07
CP011848.1\|AXB69692.1\|3502261_3503026_-\|CRISPR-associated-protein-cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.96707e-25
CP011848.1\|AXB69687.1\|3495865_3496312_-\|transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00432777
CP011848.1\|AXB69696.1\|3506065_3507301_-\|phage-related-replicative-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	3.61744e-73
CP011848.1\|AXB69684.1\|3492738_3493941_-\|frg-domain-containing-protein	gnl\|CDD\|378073	pfam08867, FRG, FRG domain. This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.	2.80418e-17
CP011848.1\|AXB69689.1\|3498006_3499992_-\|CRISPR-associated-helicase-cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	5.04928e-56
CP011848.1\|AXB69690.1\|3500002_3501073_-\|CRISPR-associated-autoregulator	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	6.81162e-13
CP011848.1\|AXB69694.1\|3504143_3505271_-\|HNH-endonuclease	gnl\|CDD\|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	2.22343e-44

>CP011848.1|AXB69687.1|3495865_3496312_-|transposase
MIAQFTNFLGDNNEISKDTIFIDGTKIESSANRYTFVWKKAVNKNMAKMVNNISDFILKCEIDVGIKIVYEDKIKIYHLKKLKKISKEANVAFIHGKGNRKSTKNLHIMGERNSCSKTDNDETFMRMKEDHMKNGQLKPAYNIQFGVD
>CP011848.1|AXB69686.1|3495283_3495619_-|transposase,-is4
MDYEEENNYYICTNEKKLFANKIINRKSKTGYKSEITCYICEECSNCQYKSNCIKRSNSKVPLKNRTKNLQVSKSFHEKRKENLKRIMSLEGDELRVNRSIQAEGAFAQVK
>CP011848.1|AXB69685.1|3494890_3495220_-|hypothetical-protein
MAIAYNVSRLHNKIVKNKRGIYLYHLKKYSKIIIYNQILSEKMVFLYLYLSCIILLRTETLYKTIENIPIKIIRKELSQNKFNLLMQQPHIDIHLGCIIIHFNITCSLG
>CP011848.1|AXB69684.1|3492738_3493941_-|frg-domain-containing-protein
MQSVICKIFDNKLLISNDLSEQDDVLYEVMDKFIDDIEYISKLGDEQIKSMLMEVNKFEEDSTEFELYMKNLCYLKQSYFIDTNDKSEINSIDIDILKNVKIEDLVDITNIKLERNLNINIEHISKAVNKIYEENEKWKEYNIQNTMSKYIGIPESEVIFISNLSQYVSFLSELDNAGDYVSRGQKDCMYELLPSLHRKYKKDYGIHSDEYEEAFKQKIIYYDKEIKNRSSEELRAEGQHFGLPTEYLDFTEAHLISLLFAIEDYKYTKQHSIVYFIDSISYNTDTIKRSEKLVNYSDTSAIDNCSKFSSRSFFIKVGNSNERIHFQKGCFLKVSSEDKGEFKEKLKKYCKVVVINKDAKKEILKELFNLGITFENIYPDKDNVVKSIKFYYDEIVGGNL
>CP011848.1|AXB69683.1|3491446_3492739_-|hypothetical-protein
MREQFKNSIKNIKSNRPLVSVQDIVNFIDKGEKYLKLSIDEIDEMEILQGIVMSPDYQRTYKSSNKEESSIIESLLIGIPIPEIFLVKIGVNDMQIRHVMDGQHRLNAIYRYVKNKYPLKNLDILGNDPLYDNKRFSELEKKDKIKILGSHLSILEFDGFDNPEIEIELFKRYNRNTKPLEMQEIEMATYFSETSKYISKFINTLIKDKYKDEIDKSEYKYANYKSDLLRIYNITKSRNDKQKNHQEICIIFSILENGLQENIRDGVTASKKFLEYKSIQYKNNESEKLELLKDKFDEFNRMILKISEKIEYPFSTSLISDDKQRQSKYLIGVSIVLASICYYYDIDLENNYLIQDIKKIISCSPIADIEYKASSTNMKNMILYLFIKNKIQDNKFESLNLKRDKIKEINTLVMNNDGYLNEQTRLLEIY
>CP011848.1|AXB69682.1|3490615_3491005_+|integrase,-catalytic-region
MRAVGLSSVCRKKKFSYVKCTPEVIAENVLSRKFSADKTSQKWLTGVTEFKLTNGMKAYLSAILDLDDRSIVSYVIGKSNNNNLVLETFDKAIELYPNAKPIFHNDKSFQYTSKVFKSKLLTQGMIQSM
>CP011848.1|AXB69681.1|3490313_3490514_+|transposase
MRNYEAFGNDGLIKQSCKLCYCEEFKLNAIKSYLNGEGSYDTISKKYKMRSVYSLKAWGKEYNPHK
>CP011848.1|AXB69680.1|3488704_3489715_-|hypothetical-protein
MITKIKKTYIYLKEIQKIYKINEHKELVHIIKKLINDNKIKPIKTSDLTPQHEQLYTKYRIIKQETEEDKKILEEINYKICDKLSIDYYRKNLVHYKNNRVAIMDLNSYLIKKSDNLSKKISINERSYEIFKDEKFISSKVGKEVLKNLKIDLIKDLNVYKTPEPFIYLSINRISPQKILIIENKDTYITITKMLLEGKEILKNKIDTVIYGEGKKIINSIKGLKEDITIEYLTNKENEFLYWGDIDKTGLSIYTSLKDTNEINNIRLFEVAYEHMIDKTKENTLRNIPKNQKDNFECGLENINNLNLKESIKNILVQGKYIPQEALNRFDLEEYN
>CP011848.1|AXB69679.1|3487085_3488705_-|hypothetical-protein
MEMINILEGYNKRVNCIGSYYLIATLANNRNKFKEFDNIQFYNLLIQVLCYIFDRSLRRKNCLRDDIKDFIEEINRMDYKIMLSEDDLKDLANYIINGLTNSGKVYLFTYYSLEQEKHIDESIKIIEDKNVKINNQERLSYSLTTEGYRLLLSTKEYDELFQIQISQMIAKLRIEKGDYQGAKEDIYDIINTLEIHQQKIDNYIKIIKVNILYIKEEKYSTVIDTTVETLLEEMDKYEELKKEVKLLIKDKEDYLEKDEDIDKEKIKNIRTQLLQMKELIDGIVLAKSTATNLLSRVQDFREEFKEILKKLLTTPVIKRFNFKEEILDRLEKDSDFLLIIRELYISLFKVELPNRFNIGVAYQEQKLLNTREIENEIVNKDELEIIENKEKEERINYCENYYFDFFKYLIKYGLEKGQFTLEEFLKNYLKYDKVIYLEITKDSKLMRDIIIYFANQRESINIKKIIRMLENSAFSPNTDFQIERLIERLLVEDFELLNSVSHIKSNKIFEDEMKINTEINLETMTAVKLEIANIKFEII
>CP011848.1|AXB69678.1|3486339_3487068_-|hypothetical-protein
MNISLNDYKIANEIFYRLLKKSELKEKEAKELFLAYINNSNVRYALEAICEVSKIKIILISDTLYLIPNNDNDIFGFDYRRESLLGKDLKDSYLGYLIMTIIFSEFTNGVAPASYIQVLNLLDLVQESLERSIARDNLEEIEKSCEFNITILKNYWESKRKWDESSKKGIETTSADFQIGFIRKIINFLKNEGLIVHIEDEDKIKPTRRFLDLMNNYFLDEERKVLIEKLVLRKGESINASN
>CP011848.1|AXB69689.1|3498006_3499992_-|CRISPR-associated-helicase-cas3
MNNLYEYKAKSDGTSIDKHNEDMNYIMNQLVSIYNISNDMKNDLYEAIVCHDVGKVVKSFQDNIESSTRRVRHELLSASIKYLNRGQKLAILTHHKDIKFLEGQITNSIYEIELKELKELLDIEVEDIRPFIKEISRARNDDTRKLENILLKGYLQYCDHIASAGIKSIDKGFNSIKDFSIPKGVSYNSIQEKVLNMDKNEDIMIMAMTGLGKTATSLYWSNLVQNEYKSKRVYYILPYTASINSLYENLYNRNISVSMLHSKAPYFLNKISDEEDIKQLYQIYKKSVKQINVCTIFQLVKSVFSCKRFEMLLSQLKDSIFIVDEIHCFDTRVLCYTLEFLKYLKENLNVKICIMSASIPTCLKKLIQERLQISTIIEPDSKDLIFRHRLNRLSEGILDSIHKIENDLMQGKRVLICVNSVDLSQELYGRLQKYNPKLIHGRFNTRDREQAEKGIEESFLLIGTQSIEVSLDISYDVLYTELAPLDSLLQRFGRVNRRGDNAELSNIYIYDYDRKLNIYDEDIINRTDIVISDIIHNDNSIVDESKVPSYLDNVYLDIDMDKYNKHKVALEIIMKNMRLGVWNKSANNDMLNNDTISVVPECLLEEYKLYIDKKMYLEASSLFVNVSVKRYNYNKKMFYECGDIVVTSYSYNDKLGLIFDC
>CP011848.1|AXB69690.1|3500002_3501073_-|CRISPR-associated-autoregulator
MENKNSNRMLNIGYAIEVLCGRLNGSSSEVEKKNNSYKNSTYTKKIGSRSRISSQCQKYNQKLFMEQVCGYEQNVKTKDGKQVKLVPNPFKYATDDIFGFMMAEKLSIEEDVYKELSDEEKEIYKKNKKKYEVNITKKRKSRWQMNSLINVSNRKVEWEWNVCGTTGDSMPYQVEVYSGVHTNIANLNIGKIGEYDISDIASEHRDYTTLEAKSIGVEKLDKEEKFKRIEALLKSLEYLSVEGNKTNHLTDTKPKFVILGEYSWGNNVFQGIIKENGLDVEMLKESIEQNEEFRKSDIWIGINKFYDDTFNEIEVNNEKEQIKKYLEEEFEEYDFMKISNVHQAFESYLKYLKETL
>CP011848.1|AXB69691.1|3501093_3502260_-|hypothetical-protein
MDRSYNVFVDNGLYVLAYYLNKDINDITYQDIENSIDLMSDKIEEFVSCEKYSNLKSMCFSNSTLTQPKGKVTLNEKLKGFVKNQGDEYCSLCGQYKAKVKIEDKEYNIGRSYMPNLVANTFYNFSNNLQGLNVCPYCLVLTMYSILNCRVSRYAFLYNSTSSEFMEDYTFHIQKENLTDVELGAKKEKEKYSIVKLLESLVCKYNLFNGDIEQYMFNNSGQSQDIQVNRIKNKYVNLLIKLQEKALLSNFEKLHLDRYILNGTLESNYLREVYRVKKEEKMDEKEQKNFDELVIFLNREVNVLKKVKIDIIKKLTDKLKTSDLDIDKIYKELKMLGKFYAYEDWLVNLNEMYYEKTGEKLFEAEDYIELDDIRSFRQIKNLILVSLI
>CP011848.1|AXB69692.1|3502261_3503026_-|CRISPR-associated-protein-cas6
MHLVRRHLILTVDNEVVLDYNYQYELMKRIYEAIEINDKRKALSLHNEGYKVDKKVFKLFNYTIMFENAKYLKEGIHLNPQTKIKLILSGYDDILNNIIKGFIKCKVFKLNNIEFKVSDIEEDSKKNFNNITLYKVRSPIVASLYDLKSRKQVYLNPMQEEFYKALHDNLGNKYKLIHNKEYTGELYFDIEDVLAVKKKYITNIKGKGFIIGYTDFEIFVQANKDMQEVIYYCGLGEKNSIGMGLLTYITSRRA
>CP011848.1|AXB69693.1|3503016_3503664_-|CRISPR-associated-protein-cas5-family-protein
MILNKIEIIGDMAHFKIPMHSKIQRTYEIPPISTVVGILKNIYGEEIDDFILGYVIYHDGTFKDLQTIYKEINPNVKTLTDSDRFQTDVCPIEYLINPKLIIYTNIDKNIEFNEPLCLGKTNCLAKVLSLSEIEVNLIDKKAIGYNQYTDINIGDGMIKRINTLTEYNEKKGYYDIYSSMVRENDEFEYGKYYDEDEQQNIFLWKWKKGGVIKCI
>CP011848.1|AXB69694.1|3504143_3505271_-|HNH-endonuclease
MIIPKLEPNDRKREFNKYSSEQINKVVYNYLFKNNMSNRKIDDEILDLSSKQSKGYQSMGIVHHLGINKNHKGIFTGYTIDKAIEVLKEDEIHFKQIINILLEIRNINEYPIIVDSWELLDEKIALKTIDKSTLKHNGTGVPIEIRYFFEINNLGKNEKKNVNFKYNDNYYSAVIEMDKLENPRSRIIWKSKFRDLLRSIFSEYYEKFLENKIEGKTNLPKIRFIKLDSNNFNIEFIFTAEIEDDVLEEISQDNPLNINTINIELETEIRKEGKVKYVYGKQYERNPRNRIEAIKYHGTKCIVCGFDFEKTYGDRGKGYIEIHHIKPLSSVGEESNINPKTDLVPICSNCHRMIHRKKDNVLSIDDLKQIIKDSK
>CP011848.1|AXB69695.1|3505543_3505816_-|hypothetical-protein
MYDEIIEIYFDYWINEHMYRSILEKDEYYIECWKEVKKINELLEINLEDDKKYLLVELNDLFNSLIEFERELSYKLGFKTGAKFIIELLK
>CP011848.1|AXB69696.1|3506065_3507301_-|phage-related-replicative-helicase
MLNEDMFYHEEHKYIFNAIKEINKRNEVIDIITLTEELKRKGHLNNIGGISYITSLSTIVPTVSNFTSYVSIVIEKYKNRNIIDKFNKFNLGEIDDNTLIYQLENDINKANQKLIKKDSSITAISERAFEYINDEMNEGIKTGIKFLDDTIGGLYGGELTTIAAKSGRGKTALALQILRNVIFQGKKVLFISGEMSDIQILFRNIASLTGISVVKMKNRNLNDDEIVKYIQALSIINQENNLYINDSVNTVSGIKREIKSTKPSLVIIDYLQILDYEGKEVGEAKFADLSRQIKKITLDFNIPVIQLAQLNDELKDERPKGDRVMRSSKQIYMDSNSVIYIHRPTEKEALNYCKTMGIEDIRELRRREKGFGANLSEIIVAKNRDGESGFRPYWYIGNLFSFEECKKIQEI
>CP011848.1|AXB69697.1|3507412_3508156_-|replication-initiator-A-domain-containing-protein
MSNKGWIKLYRELLDKSIWKDIKPERKVILITLLLMASHKENHVFIDNKRIKIKSGQFISSYSKIAERCGKGVSYQMVRSCLLVFKNAGFLTYETTNKYIVITIENWELYQENIENQQPNQQTINNQSTTIKNIKNENNIIYSEIISKFNSTCIELSKVKKLTDTRKRRINSIIREYDKEAVLEVINIVSKTSFLNGNNNTGWKANFDWIMNSSNFTKILEGNYHSKEIVINKETGIYNPDDSQLKW
>CP011848.1|AXB69698.1|3508177_3508492_-|hypothetical-protein
MKENNNLEVLKTLQATLNIIVKNEEEAQEKKQGYKIIENAKRNKAELITCKEASKLYPIGESKFRQLCHSKNKGFPCIWINNRVYIIKNKLDDWFIENANGIKL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP011848_1	1.1\|150353\|29\|CP011848\|CRISPRCasFinder	150353-150381	29	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	5105-5133	0	1.0
CP011848_2	2.1\|727717\|37\|CP011848\|CRISPRCasFinder	727717-727753	37	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	49102-49138	0	1.0
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	MK473382	Clostridium phage JD032, complete genome	34305-34341	0	1.0
CP011848_4	4.8\|1302838\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302838-1302874	37	GU949551	Clostridium phage phiCD6356, complete genome	22302-22338	0	1.0
CP011848_4	4.14\|1303235\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1303235-1303271	37	LN681539	Clostridium phage phiCD505, complete genome	47022-47058	0	1.0
CP011848_4	4.14\|1303235\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1303235-1303271	37	NC_011398	Clostridium phage phiCD27, complete genome	46321-46357	0	1.0
CP011848_4	4.14\|1303235\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1303235-1303271	37	NC_048642	Clostridium phage CDKM9, complete genome	47466-47502	0	1.0
CP011848_5	5.7\|1512115\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512115-1512151	37	HM568888	Clostridium phage phiCD38-2, complete genome	3348-3384	0	1.0
CP011848_9	9.3\|1855683\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1855683-1855720	38	GU949551	Clostridium phage phiCD6356, complete genome	4418-4455	0	1.0
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	NC_048665	Clostridium phage phiCDHM14, complete genome	32222-32258	0	1.0
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	JX145342	Clostridium phage phiMMP04, complete genome	31272-31308	0	1.0
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	NC_028838	Clostridium phage phiCD506, complete genome	35-71	0	1.0
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	HG796225	Clostridium phage phiCDHM13 complete genome	33172-33208	0	1.0
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	LN681538	Clostridium phage phiCD481-1, complete genome	58-94	0	1.0
CP011848_10	10.14\|2206065\|38\|CP011848\|CRISPRCasFinder	2206065-2206102	38	HM568888	Clostridium phage phiCD38-2, complete genome	723-760	0	1.0
CP011848_10	10.22\|2206066\|38\|CP011848\|PILER-CR	2206066-2206103	38	HM568888	Clostridium phage phiCD38-2, complete genome	723-760	0	1.0
CP011848_14	14.9\|3250553\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250553-3250588	36	MF547662	Clostridioides phage LIBA6276, complete genome	121180-121215	0	1.0
CP011848_14	14.9\|3250553\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250553-3250588	36	MF547663	Clostridioides phage LIBA2945, complete genome	119443-119478	0	1.0
CP011848_14	14.10\|3250618\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250618-3250654	37	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	2066-2102	0	1.0
CP011848_14	14.10\|3250618\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250618-3250654	37	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	119898-119934	0	1.0
CP011848_14	14.10\|3250618\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250618-3250654	37	LN681537	Clostridium phage phiCD211, complete genome	128760-128796	0	1.0
CP011848_14	14.17\|3251079\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251079-3251115	37	JX145341	Clostridium phage phiMMP02, complete genome	41433-41469	0	1.0
CP011848_14	14.25\|3251612\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251612-3251647	36	NZ_CP020425	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence	39403-39438	0	1.0
CP011848_14	14.25\|3251612\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251612-3251647	36	FN668942	Clostridium difficile BI1 plasmid pCDBI1, complete sequence	38136-38171	0	1.0
CP011848_14	14.25\|3251612\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251612-3251647	36	NZ_CP011969	Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence	34725-34760	0	1.0
CP011848_14	14.26\|3251677\|39\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251677-3251715	39	NZ_CP020425	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence	36276-36314	0	1.0
CP011848_14	14.26\|3251677\|39\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251677-3251715	39	FN668942	Clostridium difficile BI1 plasmid pCDBI1, complete sequence	35011-35049	0	1.0
CP011848_14	14.26\|3251677\|39\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251677-3251715	39	NZ_CP011969	Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence	31598-31636	0	1.0
CP011848_2	2.2\|727777\|37\|CP011848\|CRISPRCasFinder	727777-727813	37	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	49042-49078	1	0.973
CP011848_4	4.5\|1302637\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302637-1302673	37	NC_028958	Clostridium phage phiCD146, complete genome	8007-8043	1	0.973
CP011848_4	4.14\|1303235\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1303235-1303271	37	LN681542	Clostridium phage phiMMP03, complete genome	48822-48858	1	0.973
CP011848_4	4.14\|1303235\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1303235-1303271	37	NC_009231	Clostridium phage phiC2, complete genome	52360-52396	1	0.973
CP011848_5	5.5\|1511981\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1511981-1512018	38	KU057941	Clostridium phage CDSH1, complete genome	38647-38684	1	0.974
CP011848_5	5.5\|1511981\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1511981-1512018	38	HM568888	Clostridium phage phiCD38-2, complete genome	38145-38182	1	0.974
CP011848_5	5.5\|1511981\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1511981-1512018	38	LN881738	Escherichia phage slur17, complete genome	23372-23409	1	0.974
CP011848_5	5.7\|1512115\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512115-1512151	37	LN881738	Escherichia phage slur17, complete genome	17081-17117	1	0.973
CP011848_5	5.7\|1512115\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512115-1512151	37	KU057941	Clostridium phage CDSH1, complete genome	3320-3356	1	0.973
CP011848_5	5.7\|1512115\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512115-1512151	37	NC_028905	Clostridium phage phiCD111, complete genome	3348-3384	1	0.973
CP011848_5	5.7\|1512115\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512115-1512151	37	LN680009	Clostridium phage phiCDHS1 gp03 gene for putative portal capsid protein	1303-1339	1	0.973
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	GU949551	Clostridium phage phiCD6356, complete genome	36548-36583	1	0.972
CP011848_10	10.5\|2206065\|39\|CP011848\|CRT	2206065-2206103	39	HM568888	Clostridium phage phiCD38-2, complete genome	723-761	1	0.974
CP011848_10	10.15\|2206132\|37\|CP011848\|CRISPRCasFinder	2206132-2206168	37	LN681539	Clostridium phage phiCD505, complete genome	19142-19178	1	0.973
CP011848_10	10.15\|2206132\|37\|CP011848\|CRISPRCasFinder	2206132-2206168	37	JX145341	Clostridium phage phiMMP02, complete genome	19048-19084	1	0.973
CP011848_10	10.15\|2206132\|37\|CP011848\|CRISPRCasFinder	2206132-2206168	37	NC_048642	Clostridium phage CDKM9, complete genome	19080-19116	1	0.973
CP011848_10	10.15\|2206132\|37\|CP011848\|CRISPRCasFinder	2206132-2206168	37	KX228400	Clostridium phage CDKM15, complete genome	22285-22321	1	0.973
CP011848_10	10.23\|2206133\|37\|CP011848\|PILER-CR	2206133-2206169	37	LN681539	Clostridium phage phiCD505, complete genome	19142-19178	1	0.973
CP011848_10	10.23\|2206133\|37\|CP011848\|PILER-CR	2206133-2206169	37	JX145341	Clostridium phage phiMMP02, complete genome	19048-19084	1	0.973
CP011848_10	10.23\|2206133\|37\|CP011848\|PILER-CR	2206133-2206169	37	NC_048642	Clostridium phage CDKM9, complete genome	19080-19116	1	0.973
CP011848_10	10.23\|2206133\|37\|CP011848\|PILER-CR	2206133-2206169	37	KX228400	Clostridium phage CDKM15, complete genome	22285-22321	1	0.973
CP011848_14	14.11\|3250684\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250684-3250720	37	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	448-484	1	0.973
CP011848_14	14.11\|3250684\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250684-3250720	37	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	121516-121552	1	0.973
CP011848_14	14.11\|3250684\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250684-3250720	37	LN681537	Clostridium phage phiCD211, complete genome	130378-130414	1	0.973
CP011848_15	15.2\|3497226\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3497226-3497261	36	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	56560-56595	1	0.972
CP011848_15	15.2\|3497226\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3497226-3497261	36	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	118780-118815	1	0.972
CP011848_15	15.2\|3497226\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3497226-3497261	36	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	65405-65440	1	0.972
CP011848_15	15.2\|3497226\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3497226-3497261	36	LN681537	Clostridium phage phiCD211, complete genome	74267-74302	1	0.972
CP011848_4	4.3\|1302505\|35\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302505-1302539	35	NC_011398	Clostridium phage phiCD27, complete genome	47316-47350	2	0.943
CP011848_4	4.5\|1302637\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302637-1302673	37	HM568888	Clostridium phage phiCD38-2, complete genome	7995-8031	2	0.946
CP011848_5	5.3\|1511849\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1511849-1511884	36	NC_028838	Clostridium phage phiCD506, complete genome	25906-25941	2	0.944
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	NC_008226	Clostridioides difficile 630 plasmid pCD630, complete sequence	5142-5178	2	0.946
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	NZ_CP016319	Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence	163-199	2	0.946
CP011848_10	10.6\|2206132\|38\|CP011848\|CRT	2206132-2206169	38	LN681539	Clostridium phage phiCD505, complete genome	19142-19179	2	0.947
CP011848_10	10.6\|2206132\|38\|CP011848\|CRT	2206132-2206169	38	JX145341	Clostridium phage phiMMP02, complete genome	19048-19085	2	0.947
CP011848_10	10.6\|2206132\|38\|CP011848\|CRT	2206132-2206169	38	NC_048642	Clostridium phage CDKM9, complete genome	19080-19117	2	0.947
CP011848_10	10.6\|2206132\|38\|CP011848\|CRT	2206132-2206169	38	KX228400	Clostridium phage CDKM15, complete genome	22285-22322	2	0.947
CP011848_10	10.14\|2206065\|38\|CP011848\|CRISPRCasFinder	2206065-2206102	38	LN881738	Escherichia phage slur17, complete genome	19705-19742	2	0.947
CP011848_10	10.14\|2206065\|38\|CP011848\|CRISPRCasFinder	2206065-2206102	38	KU057941	Clostridium phage CDSH1, complete genome	695-732	2	0.947
CP011848_10	10.14\|2206065\|38\|CP011848\|CRISPRCasFinder	2206065-2206102	38	NC_028905	Clostridium phage phiCD111, complete genome	723-760	2	0.947
CP011848_10	10.14\|2206065\|38\|CP011848\|CRISPRCasFinder	2206065-2206102	38	NC_028958	Clostridium phage phiCD146, complete genome	728-765	2	0.947
CP011848_10	10.15\|2206132\|37\|CP011848\|CRISPRCasFinder	2206132-2206168	37	NC_011398	Clostridium phage phiCD27, complete genome	19163-19199	2	0.946
CP011848_10	10.22\|2206066\|38\|CP011848\|PILER-CR	2206066-2206103	38	LN881738	Escherichia phage slur17, complete genome	19705-19742	2	0.947
CP011848_10	10.22\|2206066\|38\|CP011848\|PILER-CR	2206066-2206103	38	KU057941	Clostridium phage CDSH1, complete genome	695-732	2	0.947
CP011848_10	10.22\|2206066\|38\|CP011848\|PILER-CR	2206066-2206103	38	NC_028905	Clostridium phage phiCD111, complete genome	723-760	2	0.947
CP011848_10	10.22\|2206066\|38\|CP011848\|PILER-CR	2206066-2206103	38	NC_028958	Clostridium phage phiCD146, complete genome	728-765	2	0.947
CP011848_10	10.23\|2206133\|37\|CP011848\|PILER-CR	2206133-2206169	37	NC_011398	Clostridium phage phiCD27, complete genome	19163-19199	2	0.946
CP011848_14	14.7\|3250421\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250421-3250457	37	MF547662	Clostridioides phage LIBA6276, complete genome	123631-123667	2	0.946
CP011848_14	14.7\|3250421\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250421-3250457	37	MF547663	Clostridioides phage LIBA2945, complete genome	121894-121930	2	0.946
CP011848_14	14.11\|3250684\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250684-3250720	37	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	43710-43746	2	0.946
CP011848_14	14.21\|3251349\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3251349-3251384	36	GU949551	Clostridium phage phiCD6356, complete genome	12962-12997	2	0.944
CP011848_15	15.5\|3497425\|36\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3497425-3497460	36	GU949551	Clostridium phage phiCD6356, complete genome	9291-9326	2	0.944
CP011848_4	4.10\|1302970\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302970-1303006	37	GU949551	Clostridium phage phiCD6356, complete genome	1435-1471	3	0.919
CP011848_5	5.10\|1512310\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512310-1512346	37	NZ_CP020425	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence	6906-6942	3	0.919
CP011848_5	5.10\|1512310\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512310-1512346	37	NZ_CP011969	Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence	2228-2264	3	0.919
CP011848_5	5.10\|1512310\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512310-1512346	37	NZ_CP029156	Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence	40717-40753	3	0.919
CP011848_5	5.10\|1512310\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1512310-1512346	37	NZ_CP029153	Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence	34761-34797	3	0.919
CP011848_7	7.1\|1715766\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1715766-1715801	36	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	17906-17941	3	0.917
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5148-5184	3	0.919
CP011848_10	10.5\|2206065\|39\|CP011848\|CRT	2206065-2206103	39	KU057941	Clostridium phage CDSH1, complete genome	695-733	3	0.923
CP011848_10	10.5\|2206065\|39\|CP011848\|CRT	2206065-2206103	39	NC_028905	Clostridium phage phiCD111, complete genome	723-761	3	0.923
CP011848_10	10.5\|2206065\|39\|CP011848\|CRT	2206065-2206103	39	NC_028958	Clostridium phage phiCD146, complete genome	728-766	3	0.923
CP011848_10	10.5\|2206065\|39\|CP011848\|CRT	2206065-2206103	39	LN881738	Escherichia phage slur17, complete genome	19704-19742	3	0.923
CP011848_10	10.6\|2206132\|38\|CP011848\|CRT	2206132-2206169	38	NC_011398	Clostridium phage phiCD27, complete genome	19163-19200	3	0.921
CP011848_15	15.3\|3497291\|39\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3497291-3497329	39	JX145342	Clostridium phage phiMMP04, complete genome	7668-7706	3	0.923
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KC821618	Cellulophaga phage phi10:1, complete genome	1207-1236	4	0.867
CP011848_5	5.3\|1511849\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1511849-1511884	36	JX145342	Clostridium phage phiMMP04, complete genome	23777-23812	4	0.889
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	MK473382	Clostridium phage JD032, complete genome	35069-35105	4	0.892
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP014419	Staphylococcus aureus strain USA300-SUR15 plasmid pUSA08-1-SUR15, complete sequence	14287-14317	4	0.871
CP011848_13	13.3\|3142726\|25\|CP011848\|CRISPRCasFinder	3142726-3142750	25	HQ634174	Cyanophage MED4-213, complete genome	98055-98079	4	0.84
CP011848_13	13.3\|3142726\|25\|CP011848\|CRISPRCasFinder	3142726-3142750	25	GU071101	Prochlorococcus phage P-HM1, complete genome	15695-15719	4	0.84
CP011848_14	14.15\|3250946\|38\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250946-3250983	38	JX145341	Clostridium phage phiMMP02, complete genome	38170-38207	4	0.895
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP045692	Klebsiella pneumoniae strain TK421 plasmid pTK421_2, complete sequence	78485-78514	5	0.833
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP042421	Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence	41155-41184	5	0.833
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	30253-30282	5	0.833
CP011848_13	13.3\|3142726\|25\|CP011848\|CRISPRCasFinder	3142726-3142750	25	MN694568	Marine virus AFVG_250M879, complete genome	12134-12158	5	0.8
CP011848_1	1.1\|150353\|29\|CP011848\|CRISPRCasFinder	150353-150381	29	KY971610	Pseudomonas phage PspYZU05, complete genome	134239-134267	6	0.793
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP009068	Borreliella afzelii K78 plasmid cp32-9, complete sequence	17310-17339	6	0.8
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP009069	Borreliella afzelii K78 plasmid cp32-4, complete sequence	17206-17235	6	0.8
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NC_015917	Borreliella bissettii DN127 plasmid lp28-4, complete sequence	20571-20600	6	0.8
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	1306356-1306385	6	0.8
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP028837	Enterococcus faecalis strain FC plasmid unnamed2, complete sequence	72809-72838	6	0.8
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1114535-1114564	6	0.8
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP042215	Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence	17519-17548	6	0.8
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	30325-30354	6	0.8
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	NC_048665	Clostridium phage phiCDHM14, complete genome	338-374	6	0.838
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	NC_028838	Clostridium phage phiCD506, complete genome	798-834	6	0.838
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	HG796225	Clostridium phage phiCDHM13 complete genome	338-374	6	0.838
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	LN681538	Clostridium phage phiCD481-1, complete genome	821-857	6	0.838
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	HG798901	Clostridium phage phiCDHM11 complete genome	338-374	6	0.838
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	182637-182666	7	0.767
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MN693725	Marine virus AFVG_250M494, complete genome	7495-7524	7	0.767
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP017230	Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.1, complete sequence	20957-20986	7	0.767
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	108731-108760	7	0.767
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	357630-357659	7	0.767
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP014203	Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence	111331-111360	7	0.767
CP011848_6	6.2\|1623154\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1623154-1623190	37	MF417840	Uncultured Caudovirales phage clone 2AX_3, partial genome	5012-5048	7	0.811
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	38371-38401	7	0.774
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	111425-111455	7	0.774
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	32132-32162	7	0.774
CP011848_13	13.1\|3142591\|31\|CP011848\|CRISPRCasFinder	3142591-3142621	31	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	168164-168194	7	0.774
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP006906	Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence	75812-75841	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MN693547	Marine virus AFVG_25M424, complete genome	13091-13120	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MN693297	Marine virus AFVG_25M423, complete genome	9184-9213	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP006570	Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence	274006-274035	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	AP014396	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S46-C203, * SEQUENCING IN PROGRESS *	2835-2864	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MN693353	Marine virus AFVG_25M425, complete genome	17638-17667	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	71028-71057	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	72280-72309	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	88412-88441	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_LR214999	Mycoplasma conjunctivae strain NCTC10147 plasmid 3	47192-47221	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	LR214965	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11	36784-36813	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	113566-113595	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	34948-34977	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	54090-54119	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	55342-55371	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	116226-116255	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP017417	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence	28139-28168	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_LR134420	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 11	60920-60949	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	10352-10381	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MK448965	Streptococcus phage Javan506, complete genome	13313-13342	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NC_007581	Clostridium phage c-st, complete genome	13365-13394	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MK448959	Streptococcus phage Javan488, complete genome	13313-13342	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MK448686	Streptococcus phage Javan157, complete genome	12914-12943	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MK448949	Streptococcus phage Javan460, complete genome	13313-13342	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MK448951	Streptococcus phage Javan470, complete genome	12914-12943	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MK448676	Streptococcus phage Javan131, complete genome	14779-14808	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	AP008983	Clostridium phage c-st genomic DNA, complete genome	13365-13394	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	6554-6583	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP019232	Bacillus thuringiensis strain YGd22-03 plasmid pYGD36, complete sequence	3173-3202	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	199881-199910	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP015730	Bacillus cereus strain A1 plasmid pBCA1, complete sequence	134417-134446	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	CP012553	Campylobacter sp. RM16192 plasmid p16192, complete sequence	15672-15701	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KY554775	Lactococcus phage AM11, complete genome	20566-20595	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KY554773	Lactococcus phage AM8, complete genome	20565-20594	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KY554768	Lactococcus phage AM1, complete genome	20565-20594	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KY554769	Lactococcus phage AM2, complete genome	20565-20594	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KY554770	Lactococcus phage AM3, complete genome	20567-20596	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MN694408	Marine virus AFVG_250M293, complete genome	5785-5814	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KY554776	Lactococcus phage AM12, complete genome	20547-20576	8	0.733
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KY554774	Lactococcus phage AM9, complete genome	20565-20594	8	0.733
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	378783-378820	8	0.789
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NC_007021	Staphylococcus phage Twort, complete genome	125111-125148	8	0.789
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT151386	Staphylococcus virus Twort, complete genome	36934-36971	8	0.789
CP011848_4	4.9\|1302904\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302904-1302940	37	MN856006	Siphoviridae sp. isolate 29, complete genome	2302-2338	8	0.784
CP011848_4	4.9\|1302904\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302904-1302940	37	KU057941	Clostridium phage CDSH1, complete genome	41439-41475	8	0.784
CP011848_4	4.9\|1302904\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302904-1302940	37	LN881738	Escherichia phage slur17, complete genome	20581-20617	8	0.784
CP011848_4	4.9\|1302904\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302904-1302940	37	NC_028905	Clostridium phage phiCD111, complete genome	41408-41444	8	0.784
CP011848_4	4.9\|1302904\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302904-1302940	37	HM568888	Clostridium phage phiCD38-2, complete genome	40938-40974	8	0.784
CP011848_5	5.3\|1511849\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1511849-1511884	36	MK373783	Escherichia phage vB_EcoM_KWBSE43-6, complete genome	127068-127103	8	0.778
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_AP017932	Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence	32832-32867	8	0.778
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	12400-12430	8	0.742
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	70259-70289	8	0.742
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	63045-63075	8	0.742
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	56929-56959	8	0.742
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	169573-169603	8	0.742
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	208329-208359	8	0.742
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	63045-63075	8	0.742
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	857477-857507	8	0.742
CP011848_10	10.13\|2205999\|37\|CP011848\|CRISPRCasFinder	2205999-2206035	37	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	35137-35173	8	0.784
CP011848_10	10.21\|2206000\|37\|CP011848\|PILER-CR	2206000-2206036	37	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	35137-35173	8	0.784
CP011848_2	2.2\|727777\|37\|CP011848\|CRISPRCasFinder	727777-727813	37	NC_022879	Enterococcus mundtii QU 25 plasmid pQY182, complete sequence	9006-9042	9	0.757
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	64826-64855	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	85077-85106	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	234555-234584	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	68597-68626	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	AP013426	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C57-MedDCM-OCT-S27-C24	23413-23442	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KJ535721	Listeria phage List-36, complete genome	131839-131868	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	430237-430266	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP033461	Brevibacillus laterosporus strain 1821L plasmid p1821L01, complete sequence	7252-7281	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	190785-190814	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	119421-119450	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	293348-293377	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NC_002253	Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pLeu, complete sequence	2039-2068	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	252793-252822	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	129793-129822	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	131046-131075	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	MN172529	Listeria phage LP-039, complete genome	130877-130906	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	DQ003638	Listeria phage A511, complete genome	132156-132185	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KJ591604	Listeria phage LMTA-148, complete genome	7271-7300	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KJ094033	Listeria phage LP-048, complete genome	305-334	9	0.7
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	130913-130942	9	0.7
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	378795-378832	9	0.763
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP011375	Moraxella bovoculi strain 58069 plasmid unnamed, complete sequence	2859-2896	9	0.763
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	43977-44014	9	0.763
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP009698	Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence	72199-72236	9	0.763
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP009542	Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence	54338-54375	9	0.763
CP011848_8	8.4\|1718186\|33\|CP011848\|CRISPRCasFinder	1718186-1718218	33	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	73614-73646	9	0.727
CP011848_8	8.4\|1718186\|33\|CP011848\|CRISPRCasFinder	1718186-1718218	33	NZ_CP032824	Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence	2020-2052	9	0.727
CP011848_8	8.4\|1718186\|33\|CP011848\|CRISPRCasFinder	1718186-1718218	33	NZ_MK715471	Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence	60841-60873	9	0.727
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_LN890332	Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid II, complete sequence	19456-19491	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP032750	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed6, complete sequence	11726-11761	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP042398	Leuconostoc citreum strain CBA3623 plasmid unnamed5, complete sequence	10132-10167	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP042376	Leuconostoc carnosum strain CBA3620 plasmid unnamed2, complete sequence	27080-27115	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP042400	Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence	36943-36978	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP014612	Leuconostoc mesenteroides subsp. jonggajibkimchii strain DRC1506 plasmid pDRC1, complete sequence	7827-7862	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP017200	Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-3, complete genome	7159-7194	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP042384	Leuconostoc pseudomesenteroides strain CBA3630 plasmid unnamed1, complete sequence	11740-11775	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP012874	Weissella cibaria strain CH2 plasmid pMKC01, complete sequence	15401-15436	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP012876	Weissella cibaria strain CH2 plasmid pMKC03, complete sequence	6103-6138	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP012876	Weissella cibaria strain CH2 plasmid pMKC03, complete sequence	13134-13169	9	0.75
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP012876	Weissella cibaria strain CH2 plasmid pMKC03, complete sequence	20165-20200	9	0.75
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	62584-62614	9	0.71
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	100908-100938	9	0.71
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP028890	Borrelia turcica IST7 plasmid lp34, complete sequence	2064-2094	9	0.71
CP011848_10	10.1\|2205808\|31\|CP011848\|CRT	2205808-2205838	31	NZ_CP017832	Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence	52592-52622	9	0.71
CP011848_10	10.4\|2205999\|38\|CP011848\|CRT	2205999-2206036	38	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	35136-35173	9	0.763
CP011848_10	10.13\|2205999\|37\|CP011848\|CRISPRCasFinder	2205999-2206035	37	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	294136-294172	9	0.757
CP011848_10	10.21\|2206000\|37\|CP011848\|PILER-CR	2206000-2206036	37	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	294136-294172	9	0.757
CP011848_14	14.11\|3250684\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250684-3250720	37	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	212802-212838	9	0.757
CP011848_14	14.11\|3250684\|37\|CP011848\|CRISPRCasFinder,CRT,PILER-CR	3250684-3250720	37	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	212842-212878	9	0.757
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	KJ018210	Flavobacterium sp. phage 1/32, complete genome	7455-7484	10	0.667
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	MF288922	Bacillus phage Janet, complete genome	40501-40537	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	MH538296	Bacillus phage Maceta, complete genome	36442-36478	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	NC_024216	Bacillus phage CAM003, complete genome	40425-40461	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	KJ489400	Bacillus phage Hoody T, complete genome	40245-40281	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	MF288921	Bacillus phage OTooleKemple52, complete genome	39856-39892	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	MH638310	Bacillus phage Kamfam, complete genome	39856-39892	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	MK215646	Bacillus phage vB_BthM-Goe5, complete genome	38291-38327	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	KU737346	Bacillus phage Vinny, complete genome	40763-40799	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	NC_024207	Bacillus phage Evoli, complete genome	40158-40194	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	MF498901	Bacillus phage Anthony, complete genome	40764-40800	10	0.73
CP011848_4	4.1\|1302372\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302372-1302408	37	NC_018856	Bacillus phage Bastille, complete genome	14410-14446	10	0.73
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	KY554775	Lactococcus phage AM11, complete genome	45977-46014	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	KY554773	Lactococcus phage AM8, complete genome	45976-46013	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	KY554769	Lactococcus phage AM2, complete genome	46201-46238	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	KY554770	Lactococcus phage AM3, complete genome	46578-46615	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	KY554776	Lactococcus phage AM12, complete genome	45958-45995	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	KY554774	Lactococcus phage AM9, complete genome	45975-46012	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MH321490	Staphylococcus phage Quidividi, complete genome	32143-32180	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP041286	Escherichia coli strain 54 plasmid p54-tetX, complete sequence	41030-41067	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP047578	Escherichia coli strain 94EC plasmid p94EC-2, complete sequence	18497-18534	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP047572	Escherichia coli strain 2EC1 plasmid p2EC1-1, complete sequence	18497-18534	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP037909	Escherichia coli strain LHM10-1 plasmid pLHM10-1, complete sequence	7086-7123	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP041443	Escherichia coli strain YPE12 plasmid pYPE12-101k-tetX4, complete sequence	38545-38582	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_MK134376	Escherichia coli strain 47EC plasmid p47EC, complete sequence	2616-2653	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219826	Escherichia coli strain RW8-1 plasmid pRW8-1_122k_tetX, complete sequence	68803-68840	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219817	Escherichia coli strain RF148-2 plasmid pRF148-2_101k_tetX, complete sequence	94616-94653	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219817	Escherichia coli strain RF148-2 plasmid pRF148-2_101k_tetX, complete sequence	99222-99259	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219818	Escherichia coli strain RF148-1 plasmid pRF148-1_119k_tetX, complete sequence	68332-68369	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219819	Escherichia coli strain RF52-1 plasmid pRF52-1_119k_tetX, complete sequence	48878-48915	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP045188	Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence	83501-83538	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP045188	Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence	92815-92852	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP045188	Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence	102129-102166	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP038140	Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence	24686-24723	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP038140	Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence	29287-29324	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP038140	Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence	33882-33919	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP038140	Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence	38482-38519	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP047460	Escherichia coli strain ZF31 plasmid pZF31-tetX-119kb, complete sequence	1456-1493	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP047460	Escherichia coli strain ZF31 plasmid pZF31-tetX-119kb, complete sequence	6071-6108	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP047466	Escherichia coli strain ZF34 plasmid pZF34-tetX-114kb, complete sequence	61265-61302	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP047466	Escherichia coli strain ZF34 plasmid pZF34-tetX-114kb, complete sequence	73744-73781	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP050174	Escherichia coli strain STB20-1 plasmid pSTB20-1T, complete sequence	23317-23354	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP041453	Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence	23294-23331	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP041453	Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence	32608-32645	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_MN381965	Escherichia coli strain 16EC plasmid p16EC-9K, complete sequence	7980-8017	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219816	Escherichia coli strain RF173-1 plasmid pRF173-1_87k_tetX, complete sequence	26026-26063	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219820	Escherichia coli strain RF108-2 plasmid pRF108-2_97k_tetX, complete sequence	45453-45490	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT219823	Escherichia coli strain RF10-1 plasmid pRF10-1_119k_tetX, complete sequence	24686-24723	10	0.737
CP011848_8	8.4\|1718186\|33\|CP011848\|CRISPRCasFinder	1718186-1718218	33	AP019525	Tenacibaculum phage PTm5 DNA, complete genome	76997-77029	10	0.697
CP011848_8	8.4\|1718186\|33\|CP011848\|CRISPRCasFinder	1718186-1718218	33	AP019524	Tenacibaculum phage PTm1 DNA, complete genome	77006-77038	10	0.697
CP011848_9	9.9\|1856081\|36\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856081-1856116	36	NZ_CP033609	Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence	30210-30245	10	0.722
CP011848_9	9.10\|1856146\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1856146-1856182	37	HG798901	Clostridium phage phiCDHM11 complete genome	31575-31611	10	0.73
CP011848_10	10.4\|2205999\|38\|CP011848\|CRT	2205999-2206036	38	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	294136-294173	10	0.737
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MT774377	CrAssphage cr107_1, complete genome	300-337	11	0.711
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	DQ163915	Bacteriophage PA11, complete genome	35858-35895	11	0.711
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NC_007808	Pseudomonas phage PA11, complete genome	35858-35895	11	0.711
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MG676466	Pseudomonas phage TC6, complete genome	6443-6480	11	0.711
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MF788075	Pseudomonas phage IME180, complete genome	6484-6521	11	0.711
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MN694526	Marine virus AFVG_250M936, complete genome	7637-7674	11	0.711
CP011848_4	4.13\|1303169\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1303169-1303205	37	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	122227-122263	12	0.676
CP011848_4	4.13\|1303169\|37\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1303169-1303205	37	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	49110-49146	12	0.676
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP017217	Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence	36342-36379	13	0.658
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MN807295	Acinetobacter phage vB_AbaP_APK116, complete genome	3563-3600	13	0.658
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	184081-184118	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MN694330	Marine virus AFVG_250M1134, complete genome	557-594	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MH892354	Streptococcus phage SW3, complete genome	24328-24365	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NC_010077	Staphylococcus aureus plasmid EDINA, complete sequence	13990-14027	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	DQ163915	Bacteriophage PA11, complete genome	35870-35907	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NC_007808	Pseudomonas phage PA11, complete genome	35870-35907	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MG676466	Pseudomonas phage TC6, complete genome	6431-6468	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MF788075	Pseudomonas phage IME180, complete genome	6472-6509	14	0.632
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	594956-594993	15	0.605
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	138451-138488	15	0.605
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	NC_002072	Streptococcus phage DT1, complete genome	30121-30158	15	0.605
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	AF085222	Streptococcus thermophilus bacteriophage DT1, complete genome	30121-30158	15	0.605
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MH937502	Streptococcus phage CHPC1083, complete genome	32637-32674	15	0.605
CP011848_4	4.7\|1302771\|38\|CP011848\|PILER-CR,CRISPRCasFinder,CRT	1302771-1302808	38	MH937478	Streptococcus phage CHPC951, complete genome	32612-32649	15	0.605
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	429045-429074	16	0.467
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	410674-410703	16	0.467
CP011848_3	3.1\|1007176\|30\|CP011848\|CRISPRCasFinder	1007176-1007205	30	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	141205-141234	16	0.467

1. spacer 1.1|150353|29|CP011848|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tgtaataagttaaagcaatatgaatcaac	Protospacer
*****************************

2. spacer 2.1|727717|37|CP011848|CRISPRCasFinder matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 0, identity: 1.0

aacaggtcttataacatttgaagataatcattactat	CRISPR spacer
aacaggtcttataacatttgaagataatcattactat	Protospacer
*************************************

3. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 0, identity: 1.0

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
tctccatctccaattaacataaataattcatccgctg	Protospacer
*************************************

4. spacer 4.8|1302838|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 0, identity: 1.0

ttataaactcccacgacaaaattaactataacctcgt	CRISPR spacer
ttataaactcccacgacaaaattaactataacctcgt	Protospacer
*************************************

5. spacer 4.14|1303235|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 0, identity: 1.0

cttttaagtgcatcaaaggagttacaagctatattta	CRISPR spacer
cttttaagtgcatcaaaggagttacaagctatattta	Protospacer
*************************************

6. spacer 4.14|1303235|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 0, identity: 1.0

cttttaagtgcatcaaaggagttacaagctatattta	CRISPR spacer
cttttaagtgcatcaaaggagttacaagctatattta	Protospacer
*************************************

7. spacer 4.14|1303235|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0

cttttaagtgcatcaaaggagttacaagctatattta	CRISPR spacer
cttttaagtgcatcaaaggagttacaagctatattta	Protospacer
*************************************

8. spacer 5.7|1512115|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

gaattatatattatgaaaaaatatggagtcacagagg	CRISPR spacer
gaattatatattatgaaaaaatatggagtcacagagg	Protospacer
*************************************

9. spacer 9.3|1855683|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 0, identity: 1.0

aggtcaagcatagattttgcaactggaagataagaaga	CRISPR spacer
aggtcaagcatagattttgcaactggaagataagaaga	Protospacer
**************************************

10. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 0, identity: 1.0

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacatcaattttcctccgcatgaaaaaatc	Protospacer
*************************************

11. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 0, identity: 1.0

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacatcaattttcctccgcatgaaaaaatc	Protospacer
*************************************

12. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 0, identity: 1.0

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacatcaattttcctccgcatgaaaaaatc	Protospacer
*************************************

13. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 0, identity: 1.0

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacatcaattttcctccgcatgaaaaaatc	Protospacer
*************************************

14. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 0, identity: 1.0

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacatcaattttcctccgcatgaaaaaatc	Protospacer
*************************************

15. spacer 10.14|2206065|38|CP011848|CRISPRCasFinder matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttttatt	Protospacer
**************************************

16. spacer 10.22|2206066|38|CP011848|PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttttatt	Protospacer
**************************************

17. spacer 14.9|3250553|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0

taatttagttatatccatttgtttaacccaattagt	CRISPR spacer
taatttagttatatccatttgtttaacccaattagt	Protospacer
************************************

18. spacer 14.9|3250553|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0

taatttagttatatccatttgtttaacccaattagt	CRISPR spacer
taatttagttatatccatttgtttaacccaattagt	Protospacer
************************************

19. spacer 14.10|3250618|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcattttgcactatatcaagcttagtatacaatg	CRISPR spacer
gtttcattttgcactatatcaagcttagtatacaatg	Protospacer
*************************************

20. spacer 14.10|3250618|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcattttgcactatatcaagcttagtatacaatg	CRISPR spacer
gtttcattttgcactatatcaagcttagtatacaatg	Protospacer
*************************************

21. spacer 14.10|3250618|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 0, identity: 1.0

gtttcattttgcactatatcaagcttagtatacaatg	CRISPR spacer
gtttcattttgcactatatcaagcttagtatacaatg	Protospacer
*************************************

22. spacer 14.17|3251079|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0

gtaaaatgagaaataaaagtaaacaaaaaggtttagt	CRISPR spacer
gtaaaatgagaaataaaagtaaacaaaaaggtttagt	Protospacer
*************************************

23. spacer 14.25|3251612|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcattaattcctttcatagcacttaagttaaccaa	CRISPR spacer
ttcattaattcctttcatagcacttaagttaaccaa	Protospacer
************************************

24. spacer 14.25|3251612|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcattaattcctttcatagcacttaagttaaccaa	CRISPR spacer
ttcattaattcctttcatagcacttaagttaaccaa	Protospacer
************************************

25. spacer 14.25|3251612|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttcattaattcctttcatagcacttaagttaaccaa	CRISPR spacer
ttcattaattcctttcatagcacttaagttaaccaa	Protospacer
************************************

26. spacer 14.26|3251677|39|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctttagttgttgtcgcttttgcttctactatagttgctt	CRISPR spacer
ctttagttgttgtcgcttttgcttctactatagttgctt	Protospacer
***************************************

27. spacer 14.26|3251677|39|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0

ctttagttgttgtcgcttttgcttctactatagttgctt	CRISPR spacer
ctttagttgttgtcgcttttgcttctactatagttgctt	Protospacer
***************************************

28. spacer 14.26|3251677|39|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ctttagttgttgtcgcttttgcttctactatagttgctt	CRISPR spacer
ctttagttgttgtcgcttttgcttctactatagttgctt	Protospacer
***************************************

29. spacer 2.2|727777|37|CP011848|CRISPRCasFinder matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 1, identity: 0.973

atatggttatctaaatatagaagataagacgttctac	CRISPR spacer
atatggttatctaaatatagaagataagatgttctac	Protospacer
*****************************.*******

30. spacer 4.5|1302637|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 1, identity: 0.973

tttataaatcttttaatgactgtctctgatggtacag	CRISPR spacer
tttataaatcttttaatgactgtctctgatggaacag	Protospacer
******************************** ****

31. spacer 4.14|1303235|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 1, identity: 0.973

cttttaagtgcatcaaaggagttacaagctatattta	CRISPR spacer
cttttaagtgcatcaaaggagttacaggctatattta	Protospacer
**************************.**********

32. spacer 4.14|1303235|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 1, identity: 0.973

cttttaagtgcatcaaaggagttacaagctatattta	CRISPR spacer
cttttaagtgcatcaaaggagttacaggctatattta	Protospacer
**************************.**********

33. spacer 5.5|1511981|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.974

ttttaagcaggtgattaaatgattaaaaaagtagaaaa	CRISPR spacer
ttttaagtaggtgattaaatgattaaaaaagtagaaaa	Protospacer
*******.******************************

34. spacer 5.5|1511981|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.974

ttttaagcaggtgattaaatgattaaaaaagtagaaaa	CRISPR spacer
ttttaagtaggtgattaaatgattaaaaaagtagaaaa	Protospacer
*******.******************************

35. spacer 5.5|1511981|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.974

ttttaagcaggtgattaaatgattaaaaaagtagaaaa	CRISPR spacer
ttttaagtaggtgattaaatgattaaaaaagtagaaaa	Protospacer
*******.******************************

36. spacer 5.7|1512115|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.973

gaattatatattatgaaaaaatatggagtcacagagg	CRISPR spacer
gaattgtatattatgaaaaaatatggagtcacagagg	Protospacer
*****.*******************************

37. spacer 5.7|1512115|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.973

gaattatatattatgaaaaaatatggagtcacagagg	CRISPR spacer
gaattgtatattatgaaaaaatatggagtcacagagg	Protospacer
*****.*******************************

38. spacer 5.7|1512115|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 1, identity: 0.973

gaattatatattatgaaaaaatatggagtcacagagg	CRISPR spacer
gaattgtatattatgaaaaaatatggagtcacagagg	Protospacer
*****.*******************************

39. spacer 5.7|1512115|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN680009 (Clostridium phage phiCDHS1 gp03 gene for putative portal capsid protein) position: , mismatch: 1, identity: 0.973

gaattatatattatgaaaaaatatggagtcacagagg	CRISPR spacer
gaattgtatattatgaaaaaatatggagtcacagagg	Protospacer
*****.*******************************

40. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.972

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
aaagttttacgcattgtatgtgtgcctagattatct	Protospacer
********.***************************

41. spacer 10.5|2206065|39|CP011848|CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.974

atggcagtaactaagaagaaaactataccttttttattc	CRISPR spacer
atggcagtaactaagaagaaaactataccttttttattt	Protospacer
**************************************.

42. spacer 10.15|2206132|37|CP011848|CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

43. spacer 10.15|2206132|37|CP011848|CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

44. spacer 10.15|2206132|37|CP011848|CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

45. spacer 10.15|2206132|37|CP011848|CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

46. spacer 10.23|2206133|37|CP011848|PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

47. spacer 10.23|2206133|37|CP011848|PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

48. spacer 10.23|2206133|37|CP011848|PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

49. spacer 10.23|2206133|37|CP011848|PILER-CR matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 1, identity: 0.973

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaa	Protospacer
************** **********************

50. spacer 14.11|3250684|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.973

ttttatatttaattttaaagattaaaggtataaacaa	CRISPR spacer
ttttatatttaattttaaagattaaaggtataaacat	Protospacer
************************************

51. spacer 14.11|3250684|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 1, identity: 0.973

ttttatatttaattttaaagattaaaggtataaacaa	CRISPR spacer
ttttatatttaattttaaagattaaaggtataaacat	Protospacer
************************************

52. spacer 14.11|3250684|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 1, identity: 0.973

ttttatatttaattttaaagattaaaggtataaacaa	CRISPR spacer
ttttatatttaattttaaagattaaaggtataaacat	Protospacer
************************************

53. spacer 15.2|3497226|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.972

ctctctactaaaattacttccacatatagctacaga	CRISPR spacer
ctctctactaaaattactcccacatatagctacaga	Protospacer
******************.*****************

54. spacer 15.2|3497226|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.972

ctctctactaaaattacttccacatatagctacaga	CRISPR spacer
ctctctactaaaattactcccacatatagctacaga	Protospacer
******************.*****************

55. spacer 15.2|3497226|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 1, identity: 0.972

ctctctactaaaattacttccacatatagctacaga	CRISPR spacer
ctctctactaaaattactcccacatatagctacaga	Protospacer
******************.*****************

56. spacer 15.2|3497226|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 1, identity: 0.972

ctctctactaaaattacttccacatatagctacaga	CRISPR spacer
ctctctactaaaattactcccacatatagctacaga	Protospacer
******************.*****************

57. spacer 4.3|1302505|35|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 2, identity: 0.943

aaaataaaagagtttgaattacccattttttcatg	CRISPR spacer
aagataaaggagtttgaattacccattttttcatg	Protospacer
**.*****.**************************

58. spacer 4.5|1302637|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 2, identity: 0.946

tttataaatcttttaatgactgtctctgatggtacag	CRISPR spacer
tttataaatcttttaatgactgtttctgatggaacag	Protospacer
***********************.******** ****

59. spacer 5.3|1511849|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 2, identity: 0.944

acgaaattagagtttgaaatatatgactacataata	CRISPR spacer
acgaaactagaatttgaaatatatgactacataata	Protospacer
******.****.************************

60. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_008226 (Clostridioides difficile 630 plasmid pCD630, complete sequence) position: , mismatch: 2, identity: 0.946

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacatcaattttcctccgaatgaaaaaatg	Protospacer
************************* **********

61. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016319 (Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence) position: , mismatch: 2, identity: 0.946

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacatcaattttcctccgaatgaaaaaatg	Protospacer
************************* **********

62. spacer 10.6|2206132|38|CP011848|CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 2, identity: 0.947

gaggaaattttatactaatgactgatgctagatttaac	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaat	Protospacer
************** **********************.

63. spacer 10.6|2206132|38|CP011848|CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 2, identity: 0.947

gaggaaattttatactaatgactgatgctagatttaac	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaat	Protospacer
************** **********************.

64. spacer 10.6|2206132|38|CP011848|CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 2, identity: 0.947

gaggaaattttatactaatgactgatgctagatttaac	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaat	Protospacer
************** **********************.

65. spacer 10.6|2206132|38|CP011848|CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 2, identity: 0.947

gaggaaattttatactaatgactgatgctagatttaac	CRISPR spacer
gaggaaattttataataatgactgatgctagatttaat	Protospacer
************** **********************.

66. spacer 10.14|2206065|38|CP011848|CRISPRCasFinder matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcgatt	Protospacer
*********************************. ***

67. spacer 10.14|2206065|38|CP011848|CRISPRCasFinder matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcgatt	Protospacer
*********************************. ***

68. spacer 10.14|2206065|38|CP011848|CRISPRCasFinder matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcaatt	Protospacer
*********************************. ***

69. spacer 10.14|2206065|38|CP011848|CRISPRCasFinder matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttaaatt	Protospacer
*********************************  ***

70. spacer 10.15|2206132|37|CP011848|CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 2, identity: 0.946

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaagttttatacaaatgactgatgctagatttaa	Protospacer
******.******** *********************

71. spacer 10.22|2206066|38|CP011848|PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcgatt	Protospacer
*********************************. ***

72. spacer 10.22|2206066|38|CP011848|PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcgatt	Protospacer
*********************************. ***

73. spacer 10.22|2206066|38|CP011848|PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcaatt	Protospacer
*********************************. ***

74. spacer 10.22|2206066|38|CP011848|PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.947

atggcagtaactaagaagaaaactataccttttttatt	CRISPR spacer
atggcagtaactaagaagaaaactataccttttaaatt	Protospacer
*********************************  ***

75. spacer 10.23|2206133|37|CP011848|PILER-CR matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 2, identity: 0.946

gaggaaattttatactaatgactgatgctagatttaa	CRISPR spacer
gaggaagttttatacaaatgactgatgctagatttaa	Protospacer
******.******** *********************

76. spacer 14.7|3250421|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 2, identity: 0.946

agttagtgatatcaatatgctaagcaatatttttaca	CRISPR spacer
agctagtgatatcaatatgataagcaatatttttaca	Protospacer
**.**************** *****************

77. spacer 14.7|3250421|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 2, identity: 0.946

agttagtgatatcaatatgctaagcaatatttttaca	CRISPR spacer
agctagtgatatcaatatgataagcaatatttttaca	Protospacer
**.**************** *****************

78. spacer 14.11|3250684|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.946

ttttatatttaattttaaagattaaaggtataaacaa	CRISPR spacer
ttttatatttaattttaaagattaaaggtataaatat	Protospacer
**********************************.*

79. spacer 14.21|3251349|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 2, identity: 0.944

gtataaaaaaagagttagaagcattagacaaatgga	CRISPR spacer
gtataaaaaaagagttagaagcattagatagatgga	Protospacer
****************************.*.*****

80. spacer 15.5|3497425|36|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 2, identity: 0.944

tgggatggattttgaagcttctatgtcaaatgtaca	CRISPR spacer
tggaatggattttgaagcatctatgtcaaatgtaca	Protospacer
***.************** *****************

81. spacer 4.10|1302970|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 3, identity: 0.919

gcagaagatttagcgactgttgttgctgaatgggatg	CRISPR spacer
gcgcaaaatttagcgactgttgttgctgaatgggatg	Protospacer
**. **.******************************

82. spacer 5.10|1512310|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.919

tcgaatgtgaatggcacttctatttctccaacttttg	CRISPR spacer
tcaaatgtgaatggtacttctatttctccaactttcg	Protospacer
**.***********.********************.*

83. spacer 5.10|1512310|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.919

tcgaatgtgaatggcacttctatttctccaacttttg	CRISPR spacer
tcaaatgtgaatggtacttctatttctccaactttcg	Protospacer
**.***********.********************.*

84. spacer 5.10|1512310|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.919

tcgaatgtgaatggcacttctatttctccaacttttg	CRISPR spacer
tcaaatgtgaatggtacttctatttctccaactttcg	Protospacer
**.***********.********************.*

85. spacer 5.10|1512310|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.919

tcgaatgtgaatggcacttctatttctccaacttttg	CRISPR spacer
tcaaatgtgaatggtacttctatttctccaactttcg	Protospacer
**.***********.********************.*

86. spacer 7.1|1715766|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917

gttgtaagaagtatcattctattttttaatctttct	CRISPR spacer
attggaggaagtatcattctattttttaatctttct	Protospacer
.*** *.*****************************

87. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 3, identity: 0.919

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgcccccacatcaattttcctccgaatgaaaaaatg	Protospacer
***.********************* **********

88. spacer 10.5|2206065|39|CP011848|CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 3, identity: 0.923

atggcagtaactaagaagaaaactataccttttttattc	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcgattt	Protospacer
*********************************. ***.

89. spacer 10.5|2206065|39|CP011848|CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 3, identity: 0.923

atggcagtaactaagaagaaaactataccttttttattc	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcaattt	Protospacer
*********************************. ***.

90. spacer 10.5|2206065|39|CP011848|CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 3, identity: 0.923

atggcagtaactaagaagaaaactataccttttttattc	CRISPR spacer
atggcagtaactaagaagaaaactataccttttaaattt	Protospacer
*********************************  ***.

91. spacer 10.5|2206065|39|CP011848|CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 3, identity: 0.923

atggcagtaactaagaagaaaactataccttttttattc	CRISPR spacer
atggcagtaactaagaagaaaactataccttttcgattt	Protospacer
*********************************. ***.

92. spacer 10.6|2206132|38|CP011848|CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 3, identity: 0.921

gaggaaattttatactaatgactgatgctagatttaac	CRISPR spacer
gaggaagttttatacaaatgactgatgctagatttaat	Protospacer
******.******** *********************.

93. spacer 15.3|3497291|39|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 3, identity: 0.923

tgtacctgggtcttttatcttacttgtaagtgtacttct	CRISPR spacer
tgtaccagggtcttttatcttacttgtaagtgtgcttcg	Protospacer
****** **************************.****

94. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KC821618 (Cellulophaga phage phi10:1, complete genome) position: , mismatch: 4, identity: 0.867

ctaagtt-ttaaaaaaattaatataaacaac	CRISPR spacer
-taatttatttaaaaaactaatataaacaac	Protospacer
 *** ** ** ******.*************

95. spacer 5.3|1511849|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 4, identity: 0.889

acgaaattagagtttgaaatatatgactacataata	CRISPR spacer
agtaaattagaatttgaaatctatgactacataata	Protospacer
*  ********.******** ***************

96. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 4, identity: 0.892

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
atgtccccacctcaattttcctccgcacgaaaaaaat	Protospacer
********** ****************.******* .

97. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP014419 (Staphylococcus aureus strain USA300-SUR15 plasmid pUSA08-1-SUR15, complete sequence) position: , mismatch: 4, identity: 0.871

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
taaatcaatctttatttaataacaaaaaact	Protospacer
*.* ****************** *******

98. spacer 13.3|3142726|25|CP011848|CRISPRCasFinder matches to HQ634174 (Cyanophage MED4-213, complete genome) position: , mismatch: 4, identity: 0.84

tactattggttcatctgtatttggc	CRISPR spacer
tgctattggtgcatctgtatttgaa	Protospacer
*.******** ************.

99. spacer 13.3|3142726|25|CP011848|CRISPRCasFinder matches to GU071101 (Prochlorococcus phage P-HM1, complete genome) position: , mismatch: 4, identity: 0.84

tactattggttcatctgtatttggc	CRISPR spacer
tgctattggtgcatctgtatttgaa	Protospacer
*.******** ************.

100. spacer 14.15|3250946|38|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 4, identity: 0.895

aggttaaaaagcaatataaaagattgcatggaattact	CRISPR spacer
aaattaaaaagcaatataaaagactgtatggaattact	Protospacer
*..********************.**.***********

101. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP045692 (Klebsiella pneumoniae strain TK421 plasmid pTK421_2, complete sequence) position: , mismatch: 5, identity: 0.833

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tttagttttaaaaaaagtaataaaaacaaa	Protospacer
.* ************* ***** ******

102. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP042421 (Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

ctaagt--tttaaaaaaattaatataaacaac	CRISPR spacer
--aactcgtttaaaaaaattaatataaataaa	Protospacer
  ** *  ********************.**

103. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 5, identity: 0.833

ctaagttttaaaaaaattaa-tataaacaac	CRISPR spacer
ctaagttctaaaaaaattaattatgatcga-	Protospacer
*******.************ ***.* *.*

104. spacer 13.3|3142726|25|CP011848|CRISPRCasFinder matches to MN694568 (Marine virus AFVG_250M879, complete genome) position: , mismatch: 5, identity: 0.8

tactattggttcatctgtatttggc	CRISPR spacer
tcaatttggttcatctgtatttggt	Protospacer
*    *******************.

105. spacer 1.1|150353|29|CP011848|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 6, identity: 0.793

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tacgataagttacagcaatacgaatcatc	Protospacer
*...******** *******.****** *

106. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP009068 (Borreliella afzelii K78 plasmid cp32-9, complete sequence) position: , mismatch: 6, identity: 0.8

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gacacttttaagaaaaataatataaacaac	Protospacer
   * ******.**** *************

107. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP009069 (Borreliella afzelii K78 plasmid cp32-4, complete sequence) position: , mismatch: 6, identity: 0.8

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gacacttttaagaaaaataatataaacaac	Protospacer
   * ******.**** *************

108. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NC_015917 (Borreliella bissettii DN127 plasmid lp28-4, complete sequence) position: , mismatch: 6, identity: 0.8

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taatgatttaaaaaatttaatagaaacaac	Protospacer
. * * ********* ****** *******

109. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 6, identity: 0.8

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gtgcgctttaaaagaattaatgtaaacaac	Protospacer
 *. *.*******.*******.********

110. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP028837 (Enterococcus faecalis strain FC plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
caaacttttaaaaaaattaatttaaaaatt	Protospacer
* ** **************** **** * .

111. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 6, identity: 0.8

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gtgcgctttaaaagaattaatgtaaacaac	Protospacer
 *. *.*******.*******.********

112. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP042215 (Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence) position: , mismatch: 6, identity: 0.8

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
caaacttttaaaaaaattaatttaaaaatt	Protospacer
* ** **************** **** * .

113. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

---ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
accgtaa---ttaaaaaaattaataggaacaac	Protospacer
    ***   *************** .******

114. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 6, identity: 0.838

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
tcattgtctgcaattaacataaataattcatctgctg	Protospacer
** ...*** **********************.****

115. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 6, identity: 0.838

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
tcattgtctgcaattaacataaataattcatctgctg	Protospacer
** ...*** **********************.****

116. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 6, identity: 0.838

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
tcattgtctgcaattaacataaataattcatctgctg	Protospacer
** ...*** **********************.****

117. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 6, identity: 0.838

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
tcattgtctgcaattaacataaataattcatctgctg	Protospacer
** ...*** **********************.****

118. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 6, identity: 0.838

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
tcattgtctgcaattaacataaataattcatctgctg	Protospacer
** ...*** **********************.****

119. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 7, identity: 0.767

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taaaattttaaaaaaattaatataataata	Protospacer
. **.********************  *

120. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MN693725 (Marine virus AFVG_250M494, complete genome) position: , mismatch: 7, identity: 0.767

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tttttttttaaaaaaattaaaacaaacaaa	Protospacer
.*   *************** *.******

121. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP017230 (Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.1, complete sequence) position: , mismatch: 7, identity: 0.767

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
ttagattttaaaaaaattaatatgaaaatt	Protospacer
.**..******************.** * .

122. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NC_017577 (Shewanella baltica OS117 plasmid pSBAL11701, complete sequence) position: , mismatch: 7, identity: 0.767

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gaaaagtttaaaaaaataaataaaaacaaa	Protospacer
  **. *********** **** ******

123. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aaaagtttttaaaaaattcatataataaat	Protospacer
  ******* ******** ******  **.

124. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP014203 (Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence) position: , mismatch: 7, identity: 0.767

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
ctttaattttaaataattaatataaacaaa	Protospacer
**  . *** *** ***************

125. spacer 6.2|1623154|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MF417840 (Uncultured Caudovirales phage clone 2AX_3, partial genome) position: , mismatch: 7, identity: 0.811

tttagcaaatttttcgtaaaagtcactattttcaatg	CRISPR spacer
ttgaaaaaattttacgtaaaagtaactattttcaact	Protospacer
** *. ******* ********* ***********.

126. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 7, identity: 0.774

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
ttatttttactttatttaaaaagaaaaaaca	Protospacer
* *.*.   ********** ***********

127. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 7, identity: 0.774

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
ttatttttactttatttaaaaagaaaaaaca	Protospacer
* *.*.   ********** ***********

128. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 7, identity: 0.774

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
ttatttttactttatttaaaaagaaaaaaca	Protospacer
* *.*.   ********** ***********

129. spacer 13.1|3142591|31|CP011848|CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 7, identity: 0.774

caatatctctggtattggaggatttattata	CRISPR spacer
ctatgcctctggtattaaaggatttattact	Protospacer
* **..**********..***********.

130. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tactattttaaccaaattaatataaacaat	Protospacer
.   .******  ****************.

131. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MN693547 (Marine virus AFVG_25M424, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aaaagtttaaaaaaaaataatataaatttt	Protospacer
  ****** ******* *********.  .

132. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MN693297 (Marine virus AFVG_25M423, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aaaagtttaaaaaaaaataatataaatttt	Protospacer
  ****** ******* *********.  .

133. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP006570 (Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gattgttttaaaaaaaataatataaaatat	Protospacer
    ************ *********  *.

134. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to AP014396 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S46-C203, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aaaagtttaaaaaaaaataatataaattta	Protospacer
  ****** ******* *********.

135. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MN693353 (Marine virus AFVG_25M425, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aaaagtttaaaaaaaaataatataaatttt	Protospacer
  ****** ******* *********.  .

136. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaatata	Protospacer
* .  ***********.*********.*

137. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaatata	Protospacer
* .  ***********.*********.*

138. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tcacattttaaaaaaattaataaaaaaaca	Protospacer
..* .***************** *** *

139. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
atttattttaaaaaaattaatacaaaaatt	Protospacer
 *  .*****************.*** * .

140. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
atttattttaaaaaaattaatacaaaaatt	Protospacer
 *  .*****************.*** * .

141. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaatata	Protospacer
* .  ***********.*********.*

142. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tcacattttaaaaaaattaataaaaaaaca	Protospacer
..* .***************** *** *

143. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaatata	Protospacer
* .  ***********.*********.*

144. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaatata	Protospacer
* .  ***********.*********.*

145. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaatata	Protospacer
* .  ***********.*********.*

146. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP017417 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaatata	Protospacer
* .  ***********.*********.*

147. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_LR134420 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 11) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
ctaacttttaaaaaaattagtatcgccgcg	Protospacer
**** **************.*** . *.

148. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cggttttttaaaaaaactaatataaaatat	Protospacer
* .  ***********.*********  *.

149. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cacttgttcaaaaaaattaatataatcaat	Protospacer
*     **.**************** ***.

150. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aagaataagaaaaaaattaatataaccaac	Protospacer
  .*.*   **************** ****

151. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cacttgttcaaaaaaattaatataatcaat	Protospacer
*     **.**************** ***.

152. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cactcgttcaaaaaaattaatataatcaat	Protospacer
*     **.**************** ***.

153. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cacttgttcaaaaaaattaatataatcaat	Protospacer
*     **.**************** ***.

154. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cactcgttcaaaaaaattaatataatcaat	Protospacer
*     **.**************** ***.

155. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
cactcgttcaaaaaaattaatataatcaat	Protospacer
*     **.**************** ***.

156. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aagaataagaaaaaaattaatataaccaac	Protospacer
  .*.*   **************** ****

157. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tcgggattcaaaaaaattaatataaccaag	Protospacer
....* **.**************** ***

158. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP019232 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD36, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gaaagttttaaaaaaatcattataataata	Protospacer
  ***************.* *****  *

159. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tcacattttaaaaaaattaataaaaaaaca	Protospacer
..* .***************** *** *

160. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP015730 (Bacillus cereus strain A1 plasmid pBCA1, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tcacattttaaaaaaattaataaaaaaaca	Protospacer
..* .***************** *** *

161. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to CP012553 (Campylobacter sp. RM16192 plasmid p16192, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tttgattttaaaaaaattaatgtaaaaatt	Protospacer
.* ..****************.**** * .

162. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aggaaatttaaaaacattaatataaataaa	Protospacer
  .*. ******** ***********.**

163. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aggaaatttaaaaacattaatataaataaa	Protospacer
  .*. ******** ***********.**

164. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KY554768 (Lactococcus phage AM1, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aggaaatttaaaaacattaatataaataaa	Protospacer
  .*. ******** ***********.**

165. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aggaaatttaaaaacattaatataaataaa	Protospacer
  .*. ******** ***********.**

166. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aggaaatttaaaaacattaatataaataaa	Protospacer
  .*. ******** ***********.**

167. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MN694408 (Marine virus AFVG_250M293, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aatagtttaaaaaaaattaatagaaaatgc	Protospacer
   ***** ************* ***  .*

168. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aggaaatttaaaaacattaatataaataaa	Protospacer
  .*. ******** ***********.**

169. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 8, identity: 0.733

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aggaaatttaaaaacattaatataaataaa	Protospacer
  .*. ******** ***********.**

170. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.789

gggtctgact-------ttaatatatatatatatatatataaatt	CRISPR spacer
-------actatataaattaatatatatatatatatatatatatt	Protospacer
       ***       ************************ ***

171. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_007021 (Staphylococcus phage Twort, complete genome) position: , mismatch: 8, identity: 0.789

-gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tatgttatacttt-atatatatatatatataaataaatg	Protospacer
 . **.  ***** ***************** ******

172. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT151386 (Staphylococcus virus Twort, complete genome) position: , mismatch: 8, identity: 0.789

-gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tatgttatacttt-atatatatatatatataaataaatg	Protospacer
 . **.  ***** ***************** ******

173. spacer 4.9|1302904|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MN856006 (Siphoviridae sp. isolate 29, complete genome) position: , mismatch: 8, identity: 0.784

agttttaaagagggcagacctaaaaaatatactaaaa	CRISPR spacer
aactttaaagaaggcagacctaaaaaatataccgtct	Protospacer
*..********.********************..

174. spacer 4.9|1302904|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 8, identity: 0.784

agttttaaagagggcagacctaaaaaatatactaaaa	CRISPR spacer
aatttccgggaaggtagacctaaaaaatatactaaga	Protospacer
*.***. ..**.**.********************.*

175. spacer 4.9|1302904|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 8, identity: 0.784

agttttaaagagggcagacctaaaaaatatactaaaa	CRISPR spacer
aatttccgggaaggtagacctaaaaaatatactaaga	Protospacer
*.***. ..**.**.********************.*

176. spacer 4.9|1302904|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 8, identity: 0.784

agttttaaagagggcagacctaaaaaatatactaaaa	CRISPR spacer
aatttccgggaaggtagacctaaaaaatatactaaga	Protospacer
*.***. ..**.**.********************.*

177. spacer 4.9|1302904|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 8, identity: 0.784

agttttaaagagggcagacctaaaaaatatactaaaa	CRISPR spacer
aatttccgggaaggtagacctaaaaaatatactaaga	Protospacer
*.***. ..**.**.********************.*

178. spacer 5.3|1511849|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MK373783 (Escherichia phage vB_EcoM_KWBSE43-6, complete genome) position: , mismatch: 8, identity: 0.778

acgaaattagagtttgaaatatatgactacataata	CRISPR spacer
agggcttcagagtttgaaatatttgagtacataaaa	Protospacer
* *.  *.************** *** ******* *

179. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 8, identity: 0.778

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
ccggttttacgcatggtatgtgtgcctagatagttt	Protospacer
  .*****.***** **************** .*.*

180. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
tccatcaatctttattaagtaagaaaaagat	Protospacer
*   ************ *.*********.

181. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
tccatcaatctttattaagtaagaaaaagat	Protospacer
*   ************ *.*********.

182. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
tccatcaatctttattaagtaagaaaaagat	Protospacer
*   ************ *.*********.

183. spacer 10.1|2205808|31|CP011848|CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
tccatcaatctttattaagtaagaaaaagat	Protospacer
*   ************ *.*********.

184. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
tccatcaatctttattaagtaagaaaaagat	Protospacer
*   ************ *.*********.

185. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
tccatcaatctttattaagtaagaaaaagat	Protospacer
*   ************ *.*********.

186. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
tccatcaatctttattaagtaagaaaaagat	Protospacer
*   ************ *.*********.

187. spacer 10.1|2205808|31|CP011848|CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.742

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
taagataatctttattaaatcagaaaaaaat	Protospacer
*.*  .********** *** ********

188. spacer 10.13|2205999|37|CP011848|CRISPRCasFinder matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 8, identity: 0.784

tttctgtatattttagttgtgttttaatattataaca	CRISPR spacer
attctgaatattttggttgtgttttaatatatagtca	Protospacer
 ***** *******.***************   . **

189. spacer 10.21|2206000|37|CP011848|PILER-CR matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 8, identity: 0.784

tttctgtatattttagttgtgttttaatattataaca	CRISPR spacer
attctgaatattttggttgtgttttaatatatagtca	Protospacer
 ***** *******.***************   . **

190. spacer 2.2|727777|37|CP011848|CRISPRCasFinder matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 9, identity: 0.757

atatggttatctaaatatagaagataagacgttctac	CRISPR spacer
aagtggttatctagatatagaaggtaagacgtcaagt	Protospacer
* .**********.*********.********.  ..

191. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taatattttaaaaaaattcatataaaattt	Protospacer
. * .************* *******   .

192. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taatattttaaaaaaattcatataaaattt	Protospacer
. * .************* *******   .

193. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
atttattttaaaaatattaatataaatgga	Protospacer
 *  .********* ***********...

194. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taatattttaaaaaaattcatataaaattt	Protospacer
. * .************* *******   .

195. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to AP013426 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C57-MedDCM-OCT-S27-C24) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tcttttgttaaaaaaattaatatgaacaga	Protospacer
..   * ****************.****.

196. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gatagtaataaaaaaattaatataaagtgt	Protospacer
   ***  ******************  ..

197. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
atttattttaaaaatattaatataaatgga	Protospacer
 *  .********* ***********...

198. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP033461 (Brevibacillus laterosporus strain 1821L plasmid p1821L01, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taaagttttaaaaacattaatagaaggtct	Protospacer
. ************ ******* **.   .

199. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taatattttaaaaaaattcatataaaattt	Protospacer
. * .************* *******   .

200. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
atttattttaaaaatattaatataaatgga	Protospacer
 *  .********* ***********...

201. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taatattttaaaaaaattcatataaaattt	Protospacer
. * .************* *******   .

202. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NC_002253 (Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pLeu, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tttttttttaaaaaaactaatataaaagta	Protospacer
.*   ***********.********* .

203. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
taatattttaaaaaaattcatataaaattt	Protospacer
. * .************* *******   .

204. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
ggtttttttaaaaaaactaatataaatata	Protospacer
     ***********.*********.*

205. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
ggtttttttaaaaaaactaatataaatata	Protospacer
     ***********.*********.*

206. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gatagtaataaaaaaattaatataaagtgt	Protospacer
   ***  ******************  ..

207. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gatagtaataaaaaaattaatataaagtgt	Protospacer
   ***  ******************  ..

208. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gatagtaataaaaaaattaatataaagtgt	Protospacer
   ***  ******************  ..

209. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gatagtaataaaaaaattaatataaagtgt	Protospacer
   ***  ******************  ..

210. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 9, identity: 0.7

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
gatagtaataaaaaaattaatataaagtgt	Protospacer
   ***  ******************  ..

211. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.763

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
gtaattatgtataatatatatatatatatatatatatt	Protospacer
* . .*.  * *********************** ***

212. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011375 (Moraxella bovoculi strain 58069 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.763

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
atgtttttagttaatatatatatatatatatatatatg	Protospacer
. **.*    ************************ **

213. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.763

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
gtcatttaacttcatatatatatatatatatataaata	Protospacer
*   .* * .** ************************

214. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009698 (Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence) position: , mismatch: 9, identity: 0.763

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
cttttttcttttgatatatatatatatatatataattt	Protospacer
   *.*  .***.********************** **

215. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009542 (Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence) position: , mismatch: 9, identity: 0.763

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
cttttttcttttgatatatatatatatatatataattt	Protospacer
   *.*  .***.********************** **

216. spacer 8.4|1718186|33|CP011848|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 9, identity: 0.727

acttatttacagctttatttgctaaatcagaag	CRISPR spacer
gaacatttaaagctttatttgctaaatctaatt	Protospacer
.  .***** ****************** .*

217. spacer 8.4|1718186|33|CP011848|CRISPRCasFinder matches to NZ_CP032824 (Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence) position: , mismatch: 9, identity: 0.727

acttatttacagctttatttgctaaatcagaag	CRISPR spacer
gaacatttaaagctttatttgctaaatctaatc	Protospacer
.  .***** ****************** .*

218. spacer 8.4|1718186|33|CP011848|CRISPRCasFinder matches to NZ_MK715471 (Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence) position: , mismatch: 9, identity: 0.727

acttatttacagctttatttgctaaatcagaag	CRISPR spacer
gaacatttaaagctttatttgctaaatccaatc	Protospacer
.  .***** ****************** .*

219. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN890332 (Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid II, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagttg	Protospacer
   *****.***** **************** .*.

220. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032750 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed6, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatcgtatgtgtgcctagatagttg	Protospacer
   *****.*****.**************** .*.

221. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042398 (Leuconostoc citreum strain CBA3623 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagttg	Protospacer
   *****.***** **************** .*.

222. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042376 (Leuconostoc carnosum strain CBA3620 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagttg	Protospacer
   *****.***** **************** .*.

223. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042400 (Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagggt	Protospacer
   *****.***** **************** .  *

224. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014612 (Leuconostoc mesenteroides subsp. jonggajibkimchii strain DRC1506 plasmid pDRC1, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagttg	Protospacer
   *****.***** **************** .*.

225. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017200 (Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-3, complete genome) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatcgtatgtgtgcctagatagttg	Protospacer
   *****.*****.**************** .*.

226. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042384 (Leuconostoc pseudomesenteroides strain CBA3630 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttgcgcatggtatgggtgcctagatagtta	Protospacer
   *********** ***** ********** .*.

227. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012874 (Weissella cibaria strain CH2 plasmid pMKC01, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatcgtatgtgtgcctagatagttg	Protospacer
   *****.*****.**************** .*.

228. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012876 (Weissella cibaria strain CH2 plasmid pMKC03, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagtta	Protospacer
   *****.***** **************** .*.

229. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012876 (Weissella cibaria strain CH2 plasmid pMKC03, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagtta	Protospacer
   *****.***** **************** .*.

230. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012876 (Weissella cibaria strain CH2 plasmid pMKC03, complete sequence) position: , mismatch: 9, identity: 0.75

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagatagtta	Protospacer
   *****.***** **************** .*.

231. spacer 10.1|2205808|31|CP011848|CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 9, identity: 0.71

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
cttatcaatcttaatttcataagaaaaattg	Protospacer
.   ******** **** ********** ..

232. spacer 10.1|2205808|31|CP011848|CRT matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 9, identity: 0.71

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
cttatcaatcttaatttcataagaaaaattg	Protospacer
.   ******** **** ********** ..

233. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP028890 (Borrelia turcica IST7 plasmid lp34, complete sequence) position: , mismatch: 9, identity: 0.71

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
aggtcttatctttatttaaaaagaaaaaaag	Protospacer
 *.... ************ ********* .

234. spacer 10.1|2205808|31|CP011848|CRT matches to NZ_CP017832 (Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence) position: , mismatch: 9, identity: 0.71

tgactcaatctttatttaataagaaaaaaca	CRISPR spacer
aaaagaaatctatatttaataagaagaaagt	Protospacer
 .*   ***** *************.***

235. spacer 10.4|2205999|38|CP011848|CRT matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 9, identity: 0.763

tttctgtatattttagttgtgttttaatattataacac	CRISPR spacer
attctgaatattttggttgtgttttaatatatagtcat	Protospacer
 ***** *******.***************   . **.

236. spacer 10.13|2205999|37|CP011848|CRISPRCasFinder matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 9, identity: 0.757

tttctgtatattttagttgtgttttaatattataaca	CRISPR spacer
ctatcgtatattttacttgtgtattaatattattgct	Protospacer
.* ..********** ****** ********** .*

237. spacer 10.21|2206000|37|CP011848|PILER-CR matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 9, identity: 0.757

tttctgtatattttagttgtgttttaatattataaca	CRISPR spacer
ctatcgtatattttacttgtgtattaatattattgct	Protospacer
.* ..********** ****** ********** .*

238. spacer 14.11|3250684|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 9, identity: 0.757

ttttatatttaattttaaagattaaaggtataaacaa	CRISPR spacer
tttacaatttaatattaaagaataaaggtataactct	Protospacer
***   ******* ******* *********** .

239. spacer 14.11|3250684|37|CP011848|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 9, identity: 0.757

ttttatatttaattttaaagattaaaggtataaacaa	CRISPR spacer
tttacaatttaatattaaagaataaaggtataactct	Protospacer
***   ******* ******* *********** .

240. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to KJ018210 (Flavobacterium sp. phage 1/32, complete genome) position: , mismatch: 10, identity: 0.667

ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
tagtaaattacaaaaattaatataaacatt	Protospacer
. . .  *** ***************** .

241. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MF288922 (Bacillus phage Janet, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

242. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MH538296 (Bacillus phage Maceta, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

243. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_024216 (Bacillus phage CAM003, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

244. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KJ489400 (Bacillus phage Hoody T, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

245. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MF288921 (Bacillus phage OTooleKemple52, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

246. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MH638310 (Bacillus phage Kamfam, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

247. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MK215646 (Bacillus phage vB_BthM-Goe5, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

248. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KU737346 (Bacillus phage Vinny, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

249. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_024207 (Bacillus phage Evoli, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

250. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MF498901 (Bacillus phage Anthony, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

251. spacer 4.1|1302372|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_018856 (Bacillus phage Bastille, complete genome) position: , mismatch: 10, identity: 0.73

tctccatctccaattaacataaataattcatccgctg	CRISPR spacer
acgcgttctccaattaacataaataaatcctccttaa	Protospacer
 * *  ******************** ** *** . .

252. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
ataaaataatttaatatatatatatatatatatatata	Protospacer
. .    * ************************* **

253. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
ataaaataatttaatatatatatatatatatatatata	Protospacer
. .    * ************************* **

254. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
ataaaataatttaatatatatatatatatatatatata	Protospacer
. .    * ************************* **

255. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
ataaaataatttaatatatatatatatatatatatata	Protospacer
. .    * ************************* **

256. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
ataaaataatttaatatatatatatatatatatatata	Protospacer
. .    * ************************* **

257. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
ataaaataatttaatatatatatatatatatatatata	Protospacer
. .    * ************************* **

258. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 10, identity: 0.737

gggtctgact-----ttaatatatatatatatatatataaatt	CRISPR spacer
-----ttattaataattaatatatatataaatatatatatata	Protospacer
     * *.*     ************** ********* **

259. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041286 (Escherichia coli strain 54 plasmid p54-tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

260. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047578 (Escherichia coli strain 94EC plasmid p94EC-2, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

261. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047572 (Escherichia coli strain 2EC1 plasmid p2EC1-1, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

262. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037909 (Escherichia coli strain LHM10-1 plasmid pLHM10-1, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

263. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041443 (Escherichia coli strain YPE12 plasmid pYPE12-101k-tetX4, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

264. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK134376 (Escherichia coli strain 47EC plasmid p47EC, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

265. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219826 (Escherichia coli strain RW8-1 plasmid pRW8-1_122k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

266. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219817 (Escherichia coli strain RF148-2 plasmid pRF148-2_101k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

267. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219817 (Escherichia coli strain RF148-2 plasmid pRF148-2_101k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

268. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219818 (Escherichia coli strain RF148-1 plasmid pRF148-1_119k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

269. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219819 (Escherichia coli strain RF52-1 plasmid pRF52-1_119k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

270. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045188 (Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

271. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045188 (Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

272. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045188 (Escherichia coli strain NT1F31 plasmid pNT1F31-tetX4, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

273. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038140 (Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

274. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038140 (Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

275. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038140 (Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

276. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038140 (Escherichia coli strain G3X16-2 plasmid pG3X16-2-3, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

277. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047460 (Escherichia coli strain ZF31 plasmid pZF31-tetX-119kb, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

278. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047460 (Escherichia coli strain ZF31 plasmid pZF31-tetX-119kb, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

279. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047466 (Escherichia coli strain ZF34 plasmid pZF34-tetX-114kb, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

280. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047466 (Escherichia coli strain ZF34 plasmid pZF34-tetX-114kb, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

281. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050174 (Escherichia coli strain STB20-1 plasmid pSTB20-1T, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

282. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041453 (Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

283. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041453 (Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

284. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN381965 (Escherichia coli strain 16EC plasmid p16EC-9K, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

285. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219816 (Escherichia coli strain RF173-1 plasmid pRF173-1_87k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

286. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219820 (Escherichia coli strain RF108-2 plasmid pRF108-2_97k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

287. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT219823 (Escherichia coli strain RF10-1 plasmid pRF10-1_119k_tetX, complete sequence) position: , mismatch: 10, identity: 0.737

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tgacacaactttaatatatttatatatacatatatttt	Protospacer
 *.. ..************ ********.*****  **

288. spacer 8.4|1718186|33|CP011848|CRISPRCasFinder matches to AP019525 (Tenacibaculum phage PTm5 DNA, complete genome) position: , mismatch: 10, identity: 0.697

acttatttacagctttatttgctaaatcagaag	CRISPR spacer
taccatttacagctttttttggtaaatctttaa	Protospacer
  ..************ **** ******   *.

289. spacer 8.4|1718186|33|CP011848|CRISPRCasFinder matches to AP019524 (Tenacibaculum phage PTm1 DNA, complete genome) position: , mismatch: 10, identity: 0.697

acttatttacagctttatttgctaaatcagaag	CRISPR spacer
taccatttacagctttttttggtaaatctttaa	Protospacer
  ..************ **** ******   *.

290. spacer 9.9|1856081|36|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033609 (Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence) position: , mismatch: 10, identity: 0.722

aaagttttgcgcattgtatgtgtgcctagattatct	CRISPR spacer
cctgttttacgcatggtatgtgtgcctagataggtc	Protospacer
   *****.***** **************** . ..

291. spacer 9.10|1856146|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 10, identity: 0.73

atgtccccacatcaattttcctccgcatgaaaaaatc	CRISPR spacer
nnnnnnnnnnatcaattttcctccgcatgaaaaaatc	Protospacer
          ***************************

292. spacer 10.4|2205999|38|CP011848|CRT matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 10, identity: 0.737

tttctgtatattttagttgtgttttaatattataacac	CRISPR spacer
ctatcgtatattttacttgtgtattaatattattgcta	Protospacer
.* ..********** ****** ********** .*

293. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MT774377 (CrAssphage cr107_1, complete genome) position: , mismatch: 11, identity: 0.711

gggtctgactttaatatatatatatatatatataaatt------	CRISPR spacer
------ggcttatatatatatatatatatataaaagttgggcaa	Protospacer
      *.***  ******************* **.**

294. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to DQ163915 (Bacteriophage PA11, complete genome) position: , mismatch: 11, identity: 0.711

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tataataatactaatatatatatatatataaatatatt	Protospacer
 .   *.*. .******************* *** ***

295. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_007808 (Pseudomonas phage PA11, complete genome) position: , mismatch: 11, identity: 0.711

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tataataatactaatatatatatatatataaatatatt	Protospacer
 .   *.*. .******************* *** ***

296. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MG676466 (Pseudomonas phage TC6, complete genome) position: , mismatch: 11, identity: 0.711

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tataataatactaatatatatatatatataaatatatt	Protospacer
 .   *.*. .******************* *** ***

297. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MF788075 (Pseudomonas phage IME180, complete genome) position: , mismatch: 11, identity: 0.711

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
tataataatactaatatatatatatatataaatatatt	Protospacer
 .   *.*. .******************* *** ***

298. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MN694526 (Marine virus AFVG_250M936, complete genome) position: , mismatch: 11, identity: 0.711

gggtctgactttaatatatatatatatatatataaatt	CRISPR spacer
aaagttttctataatatataaatatatatatataatat	Protospacer
... .*  ** ********* **************  *

299. spacer 4.13|1303169|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 12, identity: 0.676

tgctgtgccacaatttgatgcttctatagctaaattc	CRISPR spacer
caatgtggcacaatttgttgcttctataggcggaaag	Protospacer
.. **** ********* *********** ...*

300. spacer 4.13|1303169|37|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 12, identity: 0.676

tgctgtgccacaatttgatgcttctatagctaaattc	CRISPR spacer
caatgtggcacaatttgttgcttctataggcggaaag	Protospacer
.. **** ********* *********** ...*

301. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017217 (Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence) position: , mismatch: 13, identity: 0.658

gggtctgactttaatatatatatatatatatataaatt------	CRISPR spacer
------gatatatatatatatatatatatataaagaattttttg	Protospacer
      **. *  ******************* *.* *

302. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MN807295 (Acinetobacter phage vB_AbaP_APK116, complete genome) position: , mismatch: 13, identity: 0.658

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------catatatatatatatatatatatataaagagacagcat	Protospacer
        * *  ***********************

303. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------aattaatatatatatatatatatattatacataattac	Protospacer
          *********************** *  .

304. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MN694330 (Marine virus AFVG_250M1134, complete genome) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------tattcatatatatatatatatatatgaaacatgggggg	Protospacer
        . ** ********************.** .

305. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MH892354 (Streptococcus phage SW3, complete genome) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------tatatatatatatatatatatatataaaaaagagagcg	Protospacer
        . *  ***********************

306. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_010077 (Staphylococcus aureus plasmid EDINA, complete sequence) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt------	CRISPR spacer
------gatttataaatatatatatatatatcaagataatagtt	Protospacer
      **.**  * ****************  *.**

307. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to DQ163915 (Bacteriophage PA11, complete genome) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt------------	CRISPR spacer
------------aatatatatatatatataaatatattatacacatagta	Protospacer
            ****************** *** ***

308. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_007808 (Pseudomonas phage PA11, complete genome) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt------------	CRISPR spacer
------------aatatatatatatatataaatatattatacacatagta	Protospacer
            ****************** *** ***

309. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MG676466 (Pseudomonas phage TC6, complete genome) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt------------	CRISPR spacer
------------aatatatatatatatataaatatattatacacatagta	Protospacer
            ****************** *** ***

310. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MF788075 (Pseudomonas phage IME180, complete genome) position: , mismatch: 14, identity: 0.632

gggtctgactttaatatatatatatatatatataaatt------------	CRISPR spacer
------------aatatatatatatatataaatatattatacacatagta	Protospacer
            ****************** *** ***

311. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 15, identity: 0.605

gggtctgactttaatatatatatatatatatataaatt------------	CRISPR spacer
------------tatatatatatatatatatatatatcaaccatttggta	Protospacer
             ********************* **.

312. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 15, identity: 0.605

gggtctgactttaatatatatatatatatatataaatt------------	CRISPR spacer
------------agtatatataaatatatatatatattagagtaatcctt	Protospacer
            *.******** *********** ***

313. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to NC_002072 (Streptococcus phage DT1, complete genome) position: , mismatch: 15, identity: 0.605

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------tatttataaatatatatatatatagtaactaagtaact	Protospacer
        . ** *** ***************  **.*

314. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to AF085222 (Streptococcus thermophilus bacteriophage DT1, complete genome) position: , mismatch: 15, identity: 0.605

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------tatttataaatatatatatatatagtaactaagtaact	Protospacer
        . ** *** ***************  **.*

315. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MH937502 (Streptococcus phage CHPC1083, complete genome) position: , mismatch: 15, identity: 0.605

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------tatttataaatatatatatatatagtaactaagtaact	Protospacer
        . ** *** ***************  **.*

316. spacer 4.7|1302771|38|CP011848|PILER-CR,CRISPRCasFinder,CRT matches to MH937478 (Streptococcus phage CHPC951, complete genome) position: , mismatch: 15, identity: 0.605

gggtctgactttaatatatatatatatatatataaatt--------	CRISPR spacer
--------tatttataaatatatatatatatagtaactaagtaact	Protospacer
        . ** *** ***************  **.*

317. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 16, identity: 0.467

----------ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aatatatatataaatttttttaaaaattat----------	Protospacer
          . ** ****  ********

318. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 16, identity: 0.467

----------ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aatatatatataaatttttttaaaaattat----------	Protospacer
          . ** ****  ********

319. spacer 3.1|1007176|30|CP011848|CRISPRCasFinder matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 16, identity: 0.467

----------ctaagttttaaaaaaattaatataaacaac	CRISPR spacer
aatatatatataaatttttttaaaaattat----------	Protospacer
          . ** ****  ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

285644 : 301830

Synechococcus_phage(23.08%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB66894.1\|285644_286157_-	nitroreductase	A0A1V0E011	Clostridioides_phage	2.3e-83	87.1
AXB66895.1\|286606_287083_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	6.9e-26	45.8
AXB66896.1\|287088_287787_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.5e-45	43.9
AXB66897.1\|287798_289166_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-49	31.0
AXB66898.1\|289159_290236_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.7e-64	42.2
AXB66899.1\|290229_290823_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.3e-25	40.4
AXB66900.1\|290815_292348_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	2.3e-38	49.7
AXB66901.1\|292358_293609_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AXB66902.1\|293633_297440_+	formylglycinamidine ribonucleotide synthetase	A6N228	Microbacterium_phage	3.0e-31	24.1
AXB66903.1\|297645_298518_+	dtdp-4-dehydrorhamnose reductase	H9NCE8	Sphingomonas_phage	3.8e-14	30.0
AXB66904.1\|298626_299508_+	glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	8.2e-97	61.9
AXB66905.1\|299544_300102_+	dtdp-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-47	53.0
AXB66906.1\|300139_301123_+	dtdp-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	9.2e-81	47.9
AXB66907.1\|301161_301830_+	transglycosylase	A0A0H3V0Q1	Geobacillus_virus	4.1e-24	47.7

DBSCAN-SWA_2

440965 : 503101

Geobacillus_virus(15.38%)

integrase,transposase,tRNA

attL 434008:434024|attR 485539:485555

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
434008:434024	attL	NA	NA	NA	NA
AXB67042.1\|440965_441898_+\|tRNA	D-aminoacyl-tRNA deacylase	NA	NA	NA	NA
AXB67043.1\|441952_442816_+	DMT family permease	NA	NA	NA	NA
AXB67044.1\|443062_444925_+	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA
AXB67045.1\|444927_446394_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
AXB67046.1\|446417_447254_+	beta-glucoside bgl operon transcription antiterminator	NA	NA	NA	NA
AXB67047.1\|447617_447755_+	hypothetical protein	NA	NA	NA	NA
AXB67048.1\|447819_449403_+	asparagine synthetase	NA	NA	NA	NA
AXB67049.1\|449467_450064_-	radical SAM superfamily protein	NA	NA	NA	NA
AXB67050.1\|450090_450618_-	membrane spanning protein	NA	NA	NA	NA
AXB67051.1\|450979_451978_-	(R)-2-hydroxyisocaproate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	3.7e-45	34.8
AXB67052.1\|452654_453854_+	isocaprenoyl-CoA:2-hydroxyisocaproate CoA-transferase	NA	NA	NA	NA
AXB67053.1\|453892_454693_+	activator of 2-hydroxyisocaproyl-CoA dehydratase	NA	NA	NA	NA
AXB67054.1\|454707_455934_+	subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase	NA	NA	NA	NA
AXB67055.1\|455933_457061_+	subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase	NA	NA	NA	NA
AXB67056.1\|457108_458242_+	acyl-CoA dehydrogenase, short-chain specific	NA	NA	NA	NA
AXB67057.1\|458274_459060_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AXB67058.1\|459078_460116_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
AXB67059.1\|460598_462230_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
AXB67060.1\|462364_463291_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
AXB67061.1\|463620_463950_+	hypothetical protein	NA	NA	NA	NA
AXB67062.1\|463949_464162_+	pseudouridine synthase	NA	NA	NA	NA
AXB67063.1\|464809_465919_+\|transposase	transposase-like protein B	A0A0H3UZC2	Geobacillus_virus	3.1e-109	53.7
AXB67064.1\|466037_466556_+	pseudouridine synthase	NA	NA	NA	NA
AXB67065.1\|466588_467944_+\|tRNA	tRNA (Uracil-5-)-methyltransferase	A0A2K5B251	Erysipelothrix_phage	8.8e-58	34.4
AXB67066.1\|468466_469501_+	hypothetical protein	NA	NA	NA	NA
AXB67067.1\|469587_469791_+	tetratricopeptide repeat protein	A0A0A8WIL0	Clostridium_phage	1.5e-14	74.1
AXB67068.1\|469961_471122_+	cell surface protein	A0A2R2ZGK6	Clostridioides_phage	5.0e-70	47.9
AXB67069.1\|471652_472552_-\|integrase	integrase, catalytic region	A0A0C5AEA5	Paenibacillus_phage	2.7e-79	60.7
AXB67070.1\|472545_473217_-\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	1.4e-43	43.0
AXB67071.1\|474317_475691_+	arginine utilization sigma-54 dependent regulatory protein	NA	NA	NA	NA
AXB67072.1\|475946_477014_+	oxidoreductase	NA	NA	NA	NA
AXB67073.1\|477110_477419_+	2-amino-4-ketopentanoate thiolase subunit alpha	NA	NA	NA	NA
AXB67074.1\|477411_478842_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
AXB67075.1\|478919_479294_+	D-ornithine aminomutase S component	NA	NA	NA	NA
AXB67076.1\|479287_481492_+	D-ornithine aminomutase E component	NA	NA	NA	NA
AXB67077.1\|481491_482901_+	component of D-ornithine aminomutase	NA	NA	NA	NA
AXB67078.1\|482885_483950_+	amino acid racemase	NA	NA	NA	NA
AXB67079.1\|483979_485401_+	Na+/H+ antiporter	NA	NA	NA	NA
AXB67080.1\|485829_486294_+	Transcriptional regulator, effector-binding domain/component	NA	NA	NA	NA
485539:485555	attR	NA	NA	NA	NA
AXB67081.1\|486591_486954_+	Glyoxalase-like domain protein	NA	NA	NA	NA
AXB67082.1\|487548_488409_+	AraC family transcriptional regulator	D0R0F8	Streptococcus_phage	2.9e-06	32.1
AXB67083.1\|488666_490781_+	viral RNA helicase 1	NA	NA	NA	NA
AXB67084.1\|491042_493286_-	antibiotic resistance ABC transporter ATP-binding protein	A0A1B1IVR3	uncultured_Mediterranean_phage	4.7e-141	34.6
AXB67085.1\|493617_494334_+	hypothetical protein	NA	NA	NA	NA
AXB67086.1\|494361_495300_+	beta-lactamase	NA	NA	NA	NA
AXB67087.1\|495643_496327_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.1e-32	37.2
AXB67088.1\|496323_498984_+	ABC transporter permease	NA	NA	NA	NA
AXB67089.1\|499164_500346_-	two-component sensor histidine kinase	NA	NA	NA	NA
AXB67090.1\|500345_501008_-	two-component response regulator	W8CYM9	Bacillus_phage	4.3e-26	32.9
AXB67091.1\|501152_501686_-	TetR family transcriptional regulator	NA	NA	NA	NA
AXB67092.1\|501812_502019_-\|transposase	transposase-like protein B	A0A0H3UZC2	Geobacillus_virus	3.5e-19	64.4
AXB67093.1\|501999_502923_-\|transposase	transposase-like protein B	S6AND0	Bacillus_phage	5.4e-83	52.4
AXB67094.1\|502933_503101_-\|transposase	transposase-like protein A	NA	NA	NA	NA

DBSCAN-SWA_3

613357 : 651713

Streptococcus_phage(37.5%)

transposase,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB67189.1\|613357_615277_+\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	1.3e-144	39.9
AXB67190.1\|616044_616476_+	hypothetical protein	NA	NA	NA	NA
AXB67191.1\|617043_617211_+\|transposase	transposase-like protein A	NA	NA	NA	NA
AXB67192.1\|617221_618331_+\|transposase	transposase-like protein B	A0A0H3UZC2	Geobacillus_virus	9.6e-111	53.5
AXB67193.1\|618451_619036_+\|transposase	PD-(D/E)XK nuclease family transposase	NA	NA	NA	NA
AXB67194.1\|619328_620366_-	hypothetical protein	NA	NA	NA	NA
AXB67195.1\|620358_621045_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
AXB67196.1\|621056_621377_-	transcriptional regulator	NA	NA	NA	NA
AXB67197.1\|621737_623078_+	two-component sensor histidine kinase	X5JAC0	Clostridium_phage	2.4e-79	38.8
AXB67198.1\|623755_624325_-	putative HD superfamily hydrolase	NA	NA	NA	NA
AXB67199.1\|624485_625736_-	efflux protein	NA	NA	NA	NA
AXB67200.1\|626027_626606_-	TetR family transcriptional regulator	NA	NA	NA	NA
AXB67201.1\|626936_628397_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AXB67202.1\|628770_629376_+	TetR family transcriptional regulator	NA	NA	NA	NA
AXB67203.1\|629378_631946_+	PEP-utilizing kinase	A0A1V0SGR7	Hokovirus	4.1e-48	39.6
AXB67204.1\|632204_632696_-	signaling protein	NA	NA	NA	NA
AXB67205.1\|632649_632937_-	hypothetical protein	NA	NA	NA	NA
AXB67206.1\|633211_633487_+	hypothetical protein	NA	NA	NA	NA
AXB67207.1\|633506_633794_+	hypothetical protein	NA	NA	NA	NA
AXB67208.1\|634266_634701_+	hypothetical protein	NA	NA	NA	NA
AXB67209.1\|635348_636458_+\|transposase	transposase-like protein B	A0A0H3UZC2	Geobacillus_virus	3.1e-109	53.8
AXB67210.1\|636522_638646_+	hypothetical protein	NA	NA	NA	NA
AXB67211.1\|638660_643871_+	hypothetical protein	NA	NA	NA	NA
AXB67212.1\|644095_646195_-	cation transporting ATPase	E4ZFI9	Streptococcus_phage	2.2e-68	28.8
AXB67213.1\|646237_646633_-	hypothetical protein	NA	NA	NA	NA
AXB67214.1\|647693_647882_+	hypothetical protein	NA	NA	NA	NA
AXB67215.1\|648066_648507_-	hypothetical protein	NA	NA	NA	NA
AXB67216.1\|648842_650156_+	putative phosphoadenosine phosphosulfate sulfotransferase	A0A220GKF8	Streptococcus_phage	1.6e-93	41.0
AXB67217.1\|650173_650710_+	ParB-like nuclease domain protein	A0A220GKT8	Streptococcus_phage	4.2e-64	70.3
AXB67218.1\|651228_651450_+\|coat	Spore coat associated protein JA (CotJA)	NA	NA	NA	NA
AXB67219.1\|651449_651713_+\|coat	spore-coat protein	NA	NA	NA	NA

DBSCAN-SWA_4

1438002 : 1462393

Clostridium_phage(54.55%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB67894.1\|1438002_1438203_+	cold shock protein	A0A1W6JNX5	Morganella_phage	2.7e-16	66.2
AXB67895.1\|1438623_1439052_+	regulatory protein	NA	NA	NA	NA
AXB67896.1\|1439194_1439950_-	peptidyl-prolyl isomerase	NA	NA	NA	NA
AXB67897.1\|1440070_1440487_-	hypothetical protein	NA	NA	NA	NA
AXB67898.1\|1440650_1441157_-	phage protein	A0A0A8WEK1	Clostridium_phage	4.0e-56	67.1
AXB67899.1\|1441238_1441559_-	phage repressor	A0A0A8WE28	Clostridium_phage	3.7e-23	54.5
AXB67900.1\|1441727_1441925_+	phage regulatory protein	NA	NA	NA	NA
AXB67901.1\|1442029_1442470_+	DNA-binding protein	A0A090EUN5	Clostridium_phage	4.6e-32	51.4
AXB67902.1\|1442718_1443162_+	hypothetical protein	A0A1V0DZX9	Clostridioides_phage	7.6e-19	36.7
AXB67903.1\|1443166_1444231_+	phage-like element pbsx protein xkdK	A0A1V0DZX4	Clostridioides_phage	2.6e-97	52.8
AXB67904.1\|1444244_1444673_+	phage-like element pbsx protein XkdM	A0A1V0DZX1	Clostridioides_phage	2.8e-34	51.8
AXB67905.1\|1444786_1445233_+	Phage XkdN-like protein	A0A0A7RTP2	Clostridium_phage	1.1e-12	36.4
AXB67906.1\|1445259_1445427_+	hypothetical protein	NA	NA	NA	NA
AXB67907.1\|1445426_1447880_+	phage protein	A0A1V0DZX3	Clostridioides_phage	6.1e-17	61.0
AXB67908.1\|1447879_1448302_+	phage-like element pbsx protein xkdP	A0A090DBR9	Clostridium_phage	2.2e-52	70.4
AXB67909.1\|1448583_1450113_+	phage cell wall hydrolase	A0A1V0DZX6	Clostridioides_phage	1.0e-243	81.1
AXB67910.1\|1450128_1450455_+	hypothetical protein	J9QE86	Clostridium_phage	1.0e-52	94.4
AXB67911.1\|1450454_1450883_+	phage protein	A0A0A8WJ32	Clostridium_phage	5.8e-64	82.4
AXB67912.1\|1450875_1451928_+	phage protein	A0A0A8WFP3	Clostridium_phage	9.3e-140	71.3
AXB67913.1\|1451924_1452623_+	phage protein	A0A090D815	Clostridium_phage	3.3e-48	56.9
AXB67914.1\|1452623_1453610_+\|tail	phage tail fiber protein	A0A2H4J039	uncultured_Caudovirales_phage	3.4e-59	45.8
AXB67915.1\|1453631_1458809_+	RCC1 domain-containing protein, alpha-tubulin suppressor	A0A0A8WEY5	Clostridium_phage	8.2e-88	28.3
AXB67916.1\|1458825_1459179_+	hypothetical protein	A0A0A8WJF2	Clostridium_phage	4.2e-12	42.1
AXB67917.1\|1459441_1459702_+	hypothetical protein	E2ELK7	Clostridium_phage	9.9e-35	90.6
AXB67918.1\|1459926_1460382_-	hypothetical protein	NA	NA	NA	NA
AXB67919.1\|1460609_1461029_-	phage regulatory protein	S5MUV6	Brevibacillus_phage	5.4e-06	37.2
AXB67920.1\|1461327_1461537_+	phage regulatory protein	Q5YAA3	Bacillus_phage	5.9e-06	47.2
AXB67921.1\|1461568_1461778_+	hypothetical protein	NA	NA	NA	NA
AXB67922.1\|1461994_1462393_-	phage regulatory protein	A0A1L2JY18	Aeribacillus_phage	2.7e-07	29.7

DBSCAN-SWA_5

1545085 : 1553630

Pandoravirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB67994.1\|1545085_1545670_+	para-aminobenzoate synthase glutamine amidotransferase component II	A0A0P0IKJ1	Acinetobacter_phage	4.2e-57	52.6
AXB67995.1\|1545671_1547021_+	para-aminobenzoate synthase component I	S4VNU7	Pandoravirus	2.9e-37	41.2
AXB67996.1\|1547010_1547754_+	aminodeoxychorismate lyase	NA	NA	NA	NA
AXB67997.1\|1547787_1548489_+	hypothetical protein	NA	NA	NA	NA
AXB67998.1\|1548514_1549087_+	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	3.0e-44	51.6
AXB67999.1\|1549152_1549944_+	dihydropteroate synthase	S4W084	Pandoravirus	1.8e-23	28.6
AXB68000.1\|1549954_1550320_+	dihydroneopterin aldolase	NA	NA	NA	NA
AXB68001.1\|1550312_1550819_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	NA	NA	NA
AXB68002.1\|1550799_1551585_+	chorismate biosynthesis-like protein	E3T537	Cafeteria_roenbergensis_virus	1.0e-13	27.9
AXB68003.1\|1551839_1553630_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	5.6e-52	32.8

DBSCAN-SWA_6

1681044 : 1736532

Clostridium_phage(78.95%)

capsid,portal,tail,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB68117.1\|1681044_1682175_-	prophage lambdaba04, site-specific recombinase	A0A0A8WIE1	Clostridium_phage	2.9e-216	99.7
AXB68118.1\|1682253_1682961_-	hiran domain family protein	NA	NA	NA	NA
AXB68119.1\|1682973_1683843_-	HipA-like protein	NA	NA	NA	NA
AXB68120.1\|1684462_1684969_-	putative Zn peptidase	A0A0A8WEK1	Clostridium_phage	1.5e-87	100.0
AXB68121.1\|1685044_1685593_-	phage regulatory protein	A0A0A8WJ60	Clostridium_phage	2.2e-92	98.4
AXB68122.1\|1685604_1685946_-	phage repressor	A0A0A8WE28	Clostridium_phage	7.6e-59	100.0
AXB68123.1\|1686122_1686326_+	DNA-binding protein	A0A0A8WHR3	Clostridium_phage	3.7e-29	100.0
AXB68124.1\|1686373_1687183_+	anti-repressor	A0A0A8WIE3	Clostridium_phage	1.0e-146	97.4
AXB68125.1\|1687229_1687439_+	hypothetical protein	NA	NA	NA	NA
AXB68126.1\|1687448_1687823_-	hypothetical protein	A0A1L5C299	Pseudoalteromonas_phage	2.2e-11	37.1
AXB68127.1\|1687898_1688096_+	phage regulatory protein	A0A0A8WE47	Clostridium_phage	2.9e-26	92.3
AXB68128.1\|1688126_1688519_+	Helix-turn-helix domain protein	A0A0A8WHS2	Clostridium_phage	9.6e-58	93.0
AXB68129.1\|1688499_1688649_+	hypothetical protein	A0A0A8WIF8	Clostridium_phage	4.2e-14	89.4
AXB68130.1\|1688719_1689157_+	hypothetical protein	NA	NA	NA	NA
AXB68131.1\|1689168_1690335_+	phage-like protein	S5MUB5	Brevibacillus_phage	1.5e-117	55.9
AXB68132.1\|1690349_1690685_+	hypothetical protein	NA	NA	NA	NA
AXB68133.1\|1690737_1691310_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AXB68134.1\|1691332_1691905_+	phage-like protein	S5MC21	Brevibacillus_phage	8.5e-63	66.7
AXB68135.1\|1691904_1693863_+	dna-directed dna polymerase i	A0A0A7RTL3	Clostridium_phage	7.8e-265	69.1
AXB68136.1\|1693874_1696292_+	virulence-associated protein e	A0A0A7RTG3	Clostridium_phage	0.0e+00	67.7
AXB68137.1\|1696257_1696401_+	hypothetical protein	NA	NA	NA	NA
AXB68138.1\|1696573_1696900_+	phage-like protein	A0A2K5B272	Erysipelothrix_phage	8.7e-20	55.4
AXB68139.1\|1696848_1698219_+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	A0A1S7FYY5	Listeria_phage	8.4e-157	60.0
AXB68140.1\|1698372_1698852_+	sigma-70 region 4 type 2	I2E8Y5	Clostridium_phage	4.4e-36	51.0
AXB68141.1\|1699134_1699587_+	prophage antirepressor	A0A0A8WJQ8	Clostridium_phage	1.1e-68	94.1
AXB68142.1\|1699878_1700853_+	hypothetical protein	NA	NA	NA	NA
AXB68143.1\|1700873_1701383_+	hypothetical protein	NA	NA	NA	NA
AXB68144.1\|1701452_1702145_+	phage DNA-binding protein	A0A0A8WFS6	Clostridium_phage	7.0e-120	97.0
AXB68145.1\|1702122_1703376_+\|terminase	phage terminase large subunit	X5JAB3	Clostridium_phage	1.2e-245	98.3
AXB68146.1\|1703381_1704824_+\|portal	phage portal protein	A0A0A8WIH2	Clostridium_phage	3.0e-274	97.7
AXB68147.1\|1704813_1706349_+	phage protein	X5JAI9	Clostridium_phage	2.5e-194	71.9
AXB68148.1\|1706350_1706599_+	hypothetical protein	NA	NA	NA	NA
AXB68149.1\|1706666_1707230_+	phage scaffold protein	A0A0A8WFU8	Clostridium_phage	6.0e-85	93.6
AXB68150.1\|1707241_1708132_+\|capsid	phage major capsid protein	X5J9Z5	Clostridium_phage	1.4e-165	99.3
AXB68151.1\|1708150_1708384_+	hypothetical protein	A0A0A8WFD0	Clostridium_phage	4.6e-31	93.5
AXB68152.1\|1708393_1708795_+	hypothetical protein	X5JAJ0	Clostridium_phage	8.1e-68	97.0
AXB68153.1\|1708788_1709136_+	phage protein	X5JAV9	Clostridium_phage	1.1e-57	99.1
AXB68154.1\|1709135_1709426_+	phage protein	A0A0A8WFV8	Clostridium_phage	4.1e-45	96.7
AXB68155.1\|1709535_1710342_+	hypothetical protein	F8UBL7	Clostridium_phage	2.4e-47	48.0
AXB68156.1\|1710690_1711128_+	phage protein	A0A0A8WJT3	Clostridium_phage	3.3e-75	95.2
AXB68157.1\|1711120_1711297_+	hypothetical protein	X5J9Z6	Clostridium_phage	1.1e-21	93.1
AXB68158.1\|1711297_1712608_+	phage protein	X5JAJ1	Clostridium_phage	8.1e-234	92.7
AXB68159.1\|1712624_1713095_+	phage protein	A0A0A8WJ62	Clostridium_phage	1.3e-69	81.3
AXB68160.1\|1713153_1713981_+	hypothetical protein	A0A2R4P8H7	Staphylococcus_phage	1.8e-45	48.3
AXB68161.1\|1714052_1714493_+	phage protein	X5JAB6	Clostridium_phage	8.6e-47	63.7
AXB68162.1\|1715341_1715446_+	hypothetical protein	A0A090D809	Clostridium_phage	1.9e-05	73.5
AXB68163.1\|1716638_1717505_+	prophage antirepressor-related protein	X5JAW1	Clostridium_phage	3.2e-130	80.1
AXB68164.1\|1717557_1717692_+	hypothetical protein	NA	NA	NA	NA
AXB68165.1\|1718369_1718897_+	Telomeric repeat-binding factor 2	A0A0A8WJ63	Clostridium_phage	8.7e-62	97.1
AXB68166.1\|1719034_1719802_+	hypothetical protein	X5JB37	Clostridium_phage	6.3e-45	44.4
AXB68167.1\|1719867_1722240_+\|tail	phage tail tape measure protein	X5JAB7	Clostridium_phage	8.8e-146	41.5
AXB68168.1\|1722256_1722946_+	phage cell wall hydrolase	X5J9Z8	Clostridium_phage	2.0e-119	94.8
AXB68169.1\|1722938_1724831_+	phage cell wall hydrolase	A3QSB3	Clostridium_virus	0.0e+00	94.8
AXB68170.1\|1724844_1725105_+	phage protein	A0A0A8WJ65	Clostridium_phage	1.4e-33	86.0
AXB68171.1\|1725109_1725529_+	phage protein	A0A0A8WJV8	Clostridium_phage	1.3e-71	95.7
AXB68172.1\|1725529_1726579_+	phage protein	A0A0A8WFK0	Clostridium_phage	1.0e-186	94.8
AXB68173.1\|1726571_1727189_+	phage protein	A0A0A8WII4	Clostridium_phage	8.8e-114	98.0
AXB68174.1\|1727200_1728226_+\|tail	phage tail fiber protein	A3QSB7	Clostridium_virus	9.1e-140	87.8
AXB68175.1\|1728242_1729769_+	hypothetical protein	B6SBV0	Clostridium_virus	1.3e-89	60.8
AXB68176.1\|1729783_1730077_+	hypothetical protein	E2ELK3	Clostridium_phage	2.2e-38	77.9
AXB68177.1\|1730076_1730259_+	hypothetical protein	A3QSC3	Clostridium_virus	5.5e-24	95.0
AXB68178.1\|1730292_1730859_+	hypothetical protein	A0A0A8WFF2	Clostridium_phage	3.6e-37	77.8
AXB68179.1\|1730889_1731180_+	hypothetical protein	A0A0A8WIF5	Clostridium_phage	6.9e-45	95.8
AXB68180.1\|1731183_1731441_+\|holin	holin	A3QSC5	Clostridium_virus	1.1e-41	100.0
AXB68181.1\|1731701_1732565_+	AbiF-like protein	A3QSC6	Clostridium_virus	8.4e-163	99.7
AXB68182.1\|1732643_1733456_+	N-acetylmuramoyl-l-alanine amidase	X5JAJ5	Clostridium_phage	9.7e-153	97.4
AXB68183.1\|1733549_1735949_+	penicillin-binding protein	NA	NA	NA	NA
AXB68184.1\|1735989_1736166_-	putative PemI	A0A0A8WHQ4	Clostridium_phage	4.2e-13	63.8
AXB68185.1\|1736403_1736532_-	hypothetical protein	A0A0A8WEJ5	Clostridium_phage	5.8e-12	95.2

DBSCAN-SWA_7

2608144 : 2657760

Clostridium_phage(16.67%)

tRNA,protease,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB68965.1\|2608144_2608354_+\|coat	Spore coat associated protein JA (CotJA)	NA	NA	NA	NA
AXB68966.1\|2608353_2608620_+\|coat	spore-coat protein	NA	NA	NA	NA
AXB68967.1\|2608648_2609221_+\|coat	spore-coat protein	NA	NA	NA	NA
AXB68968.1\|2609454_2610645_-	cell wall hydrolase	A0A0K2SUC1	Clostridium_phage	1.7e-28	50.7
AXB68969.1\|2610904_2611336_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	A0A1L2BX65	Bacteriophage	4.6e-37	51.0
AXB68970.1\|2611448_2613677_+	DNA topoisomerase	A0A1V0SCS0	Indivirus	1.1e-28	29.0
AXB68971.1\|2613787_2614273_-	MarR family transcriptional regulator	NA	NA	NA	NA
AXB68972.1\|2614524_2615748_+	lipoprotein	NA	NA	NA	NA
AXB68973.1\|2615751_2618886_+	multidrug efflux pump, membrane protein	S5VTK5	Leptospira_phage	1.6e-110	26.8
AXB68974.1\|2618907_2620218_+	multidrug efflux pump, outer membrane protein	NA	NA	NA	NA
AXB68975.1\|2620427_2621255_-\|transposase	transposase	A0A1B1P773	Bacillus_phage	5.2e-37	35.9
AXB68976.1\|2621281_2621599_-\|transposase	transposase	NA	NA	NA	NA
AXB68977.1\|2621810_2622056_-	Double zinc ribbon	NA	NA	NA	NA
AXB68978.1\|2622269_2624897_-	pyruvate phosphate dikinase	H8YJB7	Vibrio_phage	4.3e-93	41.0
AXB68979.1\|2624957_2625794_-	positive regulator of gluconeogenesis	NA	NA	NA	NA
AXB68980.1\|2625806_2626445_-	transcriptional regulator	NA	NA	NA	NA
AXB68981.1\|2626880_2628173_-	putative homoserine dehydrogenase	NA	NA	NA	NA
AXB68982.1\|2628209_2628566_-	PTS system transporter subunit IIA	NA	NA	NA	NA
AXB68983.1\|2628600_2628960_-	glucitol operon activator protein	NA	NA	NA	NA
AXB68984.1\|2629028_2631002_-	transcription antiterminator	NA	NA	NA	NA
AXB68985.1\|2631223_2632237_-	PTS system glucitol/sorbitol-specific transporter subunit IIBC	NA	NA	NA	NA
AXB68986.1\|2632249_2632795_-	PTS system glucitol/sorbitol-specific transporter subunit IIc2	NA	NA	NA	NA
AXB68987.1\|2633170_2634040_-	AraC family transcription regulator	NA	NA	NA	NA
AXB68988.1\|2634191_2635307_-	choloylglycine hydrolase	NA	NA	NA	NA
AXB68989.1\|2635542_2636679_-	peptidase	NA	NA	NA	NA
AXB68990.1\|2636734_2638198_-	sodium/proton-dependent alanine carrier protein	NA	NA	NA	NA
AXB68991.1\|2638773_2640036_-	transporter	NA	NA	NA	NA
AXB68992.1\|2640059_2641268_-	aminotransferase	NA	NA	NA	NA
AXB68993.1\|2641297_2642191_-	phosphate butyryltransferase	NA	NA	NA	NA
AXB68994.1\|2642208_2643267_-	butyrate kinase	NA	NA	NA	NA
AXB68995.1\|2643423_2643963_-	oxidoreductase subunit	NA	NA	NA	NA
AXB68996.1\|2643975_2644695_-	oxidoreductase subunit	NA	NA	NA	NA
AXB68997.1\|2644697_2645774_-	oxidoreductase subunit	NA	NA	NA	NA
AXB68998.1\|2645802_2646000_-	oxidoreductase ferredoxin subunit	NA	NA	NA	NA
AXB68999.1\|2646282_2647050_-	IclR family transcriptional regulator	NA	NA	NA	NA
AXB69000.1\|2647329_2648877_+	nitrite/sulfite reductase	NA	NA	NA	NA
AXB69001.1\|2649042_2651109_-\|tRNA	glycyl-tRNA synthetase subunit beta	NA	NA	NA	NA
AXB69002.1\|2651108_2651987_-\|tRNA	glycyl-tRNA synthetase subunit alpha	NA	NA	NA	NA
AXB69003.1\|2652146_2652749_-	ubiquitin-associated-domain-containing protein	NA	NA	NA	NA
AXB69004.1\|2652738_2653512_-	DNA repair protein	NA	NA	NA	NA
AXB69005.1\|2653477_2653633_-	hypothetical protein	NA	NA	NA	NA
AXB69006.1\|2653705_2655085_-	Mg2+ transporter	NA	NA	NA	NA
AXB69007.1\|2655096_2655990_-	GTP-binding protein Era	NA	NA	NA	NA
AXB69008.1\|2656053_2656455_-	cytidine deaminase	NA	NA	NA	NA
AXB69009.1\|2656573_2657293_-	membrane-associated kinase and phosphatase	NA	NA	NA	NA
AXB69010.1\|2657298_2657760_-\|protease	metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_8

3053373 : 3062326

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB69336.1\|3053373_3055287_-	capsular polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.1e-26	29.8
AXB69337.1\|3055370_3056462_-	capsular polysaccharide biosynthesis glycosyl transferase	A0A1V0SL50	Klosneuvirus	1.8e-16	26.2
AXB69338.1\|3056467_3057763_-	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	3.7e-90	43.6
AXB69339.1\|3057788_3058541_-	teichuronic acid biosynthesis glycosyl transferase	A0A1V0SAH6	Catovirus	4.6e-16	40.5
AXB69340.1\|3058588_3059497_-	beta-glycosyltransferase	NA	NA	NA	NA
AXB69341.1\|3059518_3060268_-	teichuronic acid biosynthesis glycosyl transferase	A0A1V0SAH6	Catovirus	1.2e-16	38.8
AXB69342.1\|3060296_3061472_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA
AXB69343.1\|3061486_3062326_-	glycosyl transferase	A0A2P1ELT8	Moumouvirus	5.3e-05	26.3

DBSCAN-SWA_9

3680754 : 3741102

Agrobacterium_phage(15.38%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB69848.1\|3680754_3681834_-\|protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	3.3e-15	25.7
AXB69849.1\|3681989_3683339_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AXB69850.1\|3683603_3685232_-	sodium-dependent phosphate transporter	NA	NA	NA	NA
AXB69851.1\|3685355_3686960_-	FAD-dependent dehydrogenase	NA	NA	NA	NA
AXB69852.1\|3687007_3687325_-	hypothetical protein	NA	NA	NA	NA
AXB69853.1\|3687329_3687695_-	hypothetical protein	NA	NA	NA	NA
AXB69854.1\|3687775_3688813_-	protein translocase	NA	NA	NA	NA
AXB69855.1\|3689065_3689650_-	hypothetical protein	NA	NA	NA	NA
AXB69856.1\|3689664_3690108_-	hypothetical protein	NA	NA	NA	NA
AXB69857.1\|3690108_3690981_-	fimbrial assembly protein	NA	NA	NA	NA
AXB69858.1\|3691033_3691393_-	type IV pilin	NA	NA	NA	NA
AXB69859.1\|3691446_3692532_-	type IV pilus-assembly protein	NA	NA	NA	NA
AXB69860.1\|3692702_3694052_-	type IV pilus-assembly protein	NA	NA	NA	NA
AXB69861.1\|3694074_3694755_-	membrane protein	NA	NA	NA	NA
AXB69862.1\|3695146_3696226_-	ATP/GTP-binding protein	NA	NA	NA	NA
AXB69863.1\|3696803_3698174_+	transporter	NA	NA	NA	NA
AXB69864.1\|3698438_3699050_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
AXB69865.1\|3699039_3701403_-\|protease	ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	3.7e-176	44.5
AXB69866.1\|3701582_3702095_+	chromate transport protein	NA	NA	NA	NA
AXB69867.1\|3702082_3702610_+	chromate transport protein	NA	NA	NA	NA
AXB69868.1\|3702680_3703931_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.1e-146	63.1
AXB69869.1\|3703949_3704534_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.3e-57	58.8
AXB69870.1\|3704682_3705969_-	trigger factor	NA	NA	NA	NA
AXB69871.1\|3706162_3706633_-	phosphoesterase	NA	NA	NA	NA
AXB69872.1\|3706632_3707982_-	ribonuclease PH	NA	NA	NA	NA
AXB69873.1\|3708141_3710166_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	3.8e-113	37.6
AXB69874.1\|3710351_3711290_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA
AXB69875.1\|3711391_3711814_-	hypothetical protein	NA	NA	NA	NA
AXB69876.1\|3712001_3713285_+	transporter	NA	NA	NA	NA
AXB69877.1\|3713362_3713878_-	electron transport protein	NA	NA	NA	NA
AXB69878.1\|3713877_3715254_-	hydrogenase	NA	NA	NA	NA
AXB69879.1\|3715278_3715830_-	electron transport protein	NA	NA	NA	NA
AXB69880.1\|3715887_3716103_-	hypothetical protein	NA	NA	NA	NA
AXB69881.1\|3716071_3716905_-	formate dehydrogenase accessory protein	NA	NA	NA	NA
AXB69882.1\|3719348_3720407_-	ABC transporter permease	NA	NA	NA	NA
AXB69883.1\|3720617_3721277_-	two-component response regulator	W8CYM9	Bacillus_phage	4.2e-29	33.6
AXB69884.1\|3721587_3722217_+	hypothetical protein	NA	NA	NA	NA
AXB69885.1\|3722284_3723118_+	hypothetical protein	NA	NA	NA	NA
AXB69886.1\|3723213_3724002_-	hypothetical protein	NA	NA	NA	NA
AXB69887.1\|3724002_3724875_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.8e-27	34.3
AXB69888.1\|3724889_3726599_-	hypothetical protein	NA	NA	NA	NA
AXB69889.1\|3726744_3727326_-	accessory gene regulator protein	X5JB40	Clostridium_phage	3.8e-18	30.4
AXB69890.1\|3727384_3727525_-	autoinducer prepeptide	NA	NA	NA	NA
AXB69891.1\|3727536_3728853_-	sensor histidine kinase VirS	X5JAC0	Clostridium_phage	7.5e-54	32.9
AXB69892.1\|3728846_3729557_-	LytR family DNA-binding response regulator	A0A2R2ZGH8	Clostridioides_phage	1.3e-28	36.2
AXB69893.1\|3729994_3730570_-	hypothetical protein	NA	NA	NA	NA
AXB69894.1\|3730862_3731141_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA
AXB69895.1\|3731449_3732211_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
AXB69896.1\|3732379_3734407_-	exosporium glycoprotein	A0A285PXU9	Cedratvirus	1.6e-39	64.5
AXB69897.1\|3734485_3735562_-	glycosyl transferase	A0A1V0SAJ8	Catovirus	6.6e-16	25.1
AXB69898.1\|3735883_3736468_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.6e-48	51.3
AXB69899.1\|3736464_3736947_-	AraC family transcription regulator	NA	NA	NA	NA
AXB69900.1\|3737145_3738561_-	GntR family transcriptional regulator	NA	NA	NA	NA
AXB69901.1\|3738675_3739344_+	B3/4 domain protein	NA	NA	NA	NA
AXB69902.1\|3739519_3740038_-	nitroreductase	NA	NA	NA	NA
AXB69903.1\|3740189_3740513_+	transcriptional regulator	NA	NA	NA	NA
AXB69904.1\|3740517_3741102_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_10

3802127 : 3840114

Erysipelothrix_phage(69.57%)

capsid,portal,lysis,tail,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB69955.1\|3802127_3803492_+	SNF2-related protein	A0A1X9I6B0	Streptococcus_phage	2.3e-151	58.7
AXB69956.1\|3804278_3804662_+	restriction endonuclease	A0A2K5B276	Erysipelothrix_phage	3.5e-36	58.6
AXB69957.1\|3804793_3805351_+\|terminase	phage terminase, small subunit	A0A2K5B277	Erysipelothrix_phage	4.6e-53	60.6
AXB69958.1\|3805355_3806141_+	S-adenosylmethionine synthetase	NA	NA	NA	NA
AXB69959.1\|3806137_3807376_+	DNA methylase N-4/N-6 domain-containing protein	A0A2I4R670	Erysipelothrix_phage	2.1e-143	61.2
AXB69960.1\|3807362_3809300_+	site-specific DNA methylase	A0A1P8DJM9	Virus_Rctr41k	1.1e-29	35.6
AXB69961.1\|3809398_3810118_+	virulence-like protein	A0A2K5B280	Erysipelothrix_phage	2.5e-51	46.8
AXB69962.1\|3810327_3810645_+	hypothetical protein	NA	NA	NA	NA
AXB69963.1\|3810774_3811725_+	Putative amidoligase enzyme	A0A1B1IUD7	uncultured_Mediterranean_phage	1.9e-51	39.7
AXB69964.1\|3811822_3812299_+	AIG2 family protein	NA	NA	NA	NA
AXB69965.1\|3812567_3812726_+	hypothetical protein	NA	NA	NA	NA
AXB69966.1\|3813015_3814617_+\|terminase	Phage terminase	A0A2K5B285	Erysipelothrix_phage	8.0e-268	82.9
AXB69967.1\|3814634_3815993_+\|portal	phage portal protein, HK97 family	A0A2K5B287	Erysipelothrix_phage	6.5e-186	74.8
AXB69968.1\|3815814_3816627_-	hypothetical protein	NA	NA	NA	NA
AXB69969.1\|3816643_3817846_+\|capsid	phage major capsid protein, HK97 family	A0A2I4R671	Erysipelothrix_phage	3.0e-166	74.7
AXB69970.1\|3818504_3818936_+	phage protein, HK97 gp10 family	A0A2K5B292	Erysipelothrix_phage	3.3e-43	61.5
AXB69971.1\|3819370_3819982_+\|tail	phage major tail protein, phi13 family	A0A2K5B294	Erysipelothrix_phage	1.4e-74	71.4
AXB69972.1\|3819995_3820376_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	2.6e-39	65.3
AXB69973.1\|3820573_3823243_+	phage protein	A0A2K5B297	Erysipelothrix_phage	3.3e-24	68.9
AXB69974.1\|3823258_3824026_+\|tail	phage putative tail component	A0A2I4R672	Erysipelothrix_phage	7.9e-72	52.9
AXB69975.1\|3824029_3826552_+	phage minor structural protein	A0A2K5B298	Erysipelothrix_phage	0.0e+00	65.5
AXB69976.1\|3826508_3827354_+	hypothetical protein	A0A2K5B2A0	Erysipelothrix_phage	6.5e-51	50.5
AXB69977.1\|3827350_3829825_+	putative glycosyl hydrolase	A0A2K5B2A1	Erysipelothrix_phage	0.0e+00	67.6
AXB69978.1\|3829794_3830328_+\|holin,lysis	toxin secretion/phage lysis holin	A0A2K5B2A2	Erysipelothrix_phage	2.0e-50	70.6
AXB69979.1\|3830330_3831302_+	N-acetylmuramoyl-L-alanine amidase family 2 protein	H7BV89	unidentified_phage	1.1e-86	54.1
AXB69980.1\|3831422_3831845_+	sigma-70 region 4 type 2	NA	NA	NA	NA
AXB69981.1\|3832057_3833824_+	Resolvase domain protein	Q6DMS6	Streptococcus_phage	3.3e-73	43.9
AXB69982.1\|3833762_3835334_+	Resolvase domain protein	Q6DMS5	Streptococcus_phage	2.6e-154	52.7
AXB69983.1\|3835402_3836359_-	hypothetical protein	NA	NA	NA	NA
AXB69984.1\|3836436_3840114_-	helicase	A0A1B1IV52	uncultured_Mediterranean_phage	6.6e-07	33.7

DBSCAN-SWA_11

3957183 : 3968948

Clostridioides_phage(60.0%)

protease,transposase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB70081.1\|3957183_3957372_+	hypothetical protein	A0A1V0E014	Clostridioides_phage	5.3e-22	96.8
AXB70082.1\|3957566_3958124_+	transposon Tn21 resolvase	A0A1V0E035	Clostridioides_phage	4.1e-94	97.8
AXB70083.1\|3960257_3961463_+\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	2.0e-210	95.0
AXB70084.1\|3961440_3961608_+	phage-related cell wall hydrolase	A0A0A8WIC2	Clostridium_phage	3.6e-14	97.4
AXB70085.1\|3961678_3961861_+	N-acetylmuramoyl-l-alanine amidase	A0A0A8WJ04	Clostridium_phage	9.7e-21	91.5
AXB70086.1\|3961991_3962435_-	hypothetical protein	A0A1V0DZZ2	Clostridioides_phage	4.3e-62	82.6
AXB70087.1\|3962652_3963096_-	hypothetical protein	NA	NA	NA	NA
AXB70088.1\|3963117_3963435_-	hypothetical protein	NA	NA	NA	NA
AXB70089.1\|3963624_3964326_-	hypothetical protein	A0A1V0DZZ4	Clostridioides_phage	1.4e-94	77.5
AXB70090.1\|3964318_3964861_-	sigma-70 family RNA polymerase sigma factor	A0A1V0DZZ1	Clostridioides_phage	3.8e-89	96.7
AXB70091.1\|3965100_3965283_-	hypothetical protein	NA	NA	NA	NA
AXB70092.1\|3965310_3965922_-	leucine-rich repeat protein	NA	NA	NA	NA
AXB70093.1\|3966398_3967613_-\|transposase	transposase mutator type	A0A218MNI5	uncultured_virus	7.9e-50	50.8
AXB70094.1\|3967799_3968948_-\|protease	exported carboxy-terminal processing protease	A0A0R6PIZ1	Moraxella_phage	8.3e-17	28.5

DBSCAN-SWA_12

4140682 : 4156105

Streptococcus_phage(92.31%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXB70260.1\|4140682_4141006_+	conjugative transposon protein	A0A1S5SF38	Streptococcus_phage	1.7e-39	73.5
AXB70261.1\|4141020_4141404_+	conjugative transposon protein	A0A1S5SF96	Streptococcus_phage	6.3e-38	66.1
AXB70262.1\|4141499_4141913_+	hypothetical protein	NA	NA	NA	NA
AXB70263.1\|4142019_4142478_+	glyoxalase/bleomycin resistance protein/dioxygenase	NA	NA	NA	NA
AXB70264.1\|4142502_4143045_+	hypothetical protein	NA	NA	NA	NA
AXB70265.1\|4143041_4143608_+	hypothetical protein	NA	NA	NA	NA
AXB70266.1\|4143717_4145112_+	conjugative transposon FtsK/SpoIIIE-like protein	A0A1S5SFB5	Streptococcus_phage	1.3e-178	66.8
AXB70267.1\|4145391_4146513_+	conjugative transposon replication initiation factor	A0A1S5SEX3	Streptococcus_phage	1.3e-134	62.7
AXB70268.1\|4146519_4146654_+	conjugative transposon protein	NA	NA	NA	NA
AXB70269.1\|4146654_4146876_+	conjugative transposon protein	A0A1S5SEY0	Streptococcus_phage	1.2e-28	86.3
AXB70270.1\|4147195_4147834_+	chloramphenicol o-acetyltransferase	G3CFL0	Escherichia_phage	7.6e-36	35.3
AXB70271.1\|4148119_4148617_+	conjugative transposon protein	A0A1S5SF25	Streptococcus_phage	1.3e-27	41.2
AXB70272.1\|4148632_4149136_+	conjugative transposon protein	A0A1S5SF25	Streptococcus_phage	4.4e-39	47.6
AXB70273.1\|4149248_4149638_+	conjugative transposon protein	A0A1S5SEX7	Streptococcus_phage	8.1e-49	73.8
AXB70274.1\|4149624_4152057_+	conjugative transposon protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	76.0
AXB70275.1\|4152056_4154192_+	conjugative transposon protein	A0A1S5SF30	Streptococcus_phage	1.3e-177	58.6
AXB70276.1\|4154188_4155196_+	cell wall hydrolase	A0A1S5SEZ8	Streptococcus_phage	6.4e-130	67.3
AXB70277.1\|4155211_4156105_+	conjugative transposon protein	A0A1S5SF22	Streptococcus_phage	1.6e-79	53.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP011848

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection