CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029999	Salmonella enterica subsp. enterica strain SA20113174 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,csa3,DEDDh,DinG,cas14j	1	5	11	2
CP030000	Salmonella enterica subsp. enterica strain SA20113174 plasmid pSA20113174.1, complete sequence	0 crisprs	DEDDh,cas14j	0	0	0	0
CP030001	Salmonella enterica subsp. enterica strain SA20113174 plasmid pSA20113174.2, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029999_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029999_2

954272-954746

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

cas3

The CRISPR arrays of CP029999_2

>merge|CP029999|2|954272-954746|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGACGTCCGCCCGGAGGCGCTGCGACGTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGTTTATTTCCCATCCCTAACAGCCGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTACGAAGTTCTTTACCTGTACTTGGCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGCGCGGGATCATACCGTGGGATAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGGTGTCGTCAGTTATTTTATCCAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTAAACGTTCCGTAAGCGCAAAGGCTAGTAGTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP029999|2|1|954272-954685|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP029999|2|2|954272-954746|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAAACGTTCCGTAAGCGCAAAGGCTAGTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP029999|2|1|954272-954746|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTTGTGTTCCCCGCGCCAGCGG
GGATAAACCGTGCCAGCGGGGATAAACCG	TGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAAACGTTCCGTAAGCGCAAAGGCTAGTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP029999.1\|AXC89558.1\|963966_965013_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP029999.1\|AXC89541.1\|940183_941326_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP029999.1\|AXC89552.1\|955728_956091_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP029999.1\|AXC89559.1\|965263_966172_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP029999.1\|AXC89556.1\|960935_961889_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP029999.1\|AXC89553.1\|956526_958326_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP029999.1\|AXC89550.1\|953406_954078_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP029999.1\|AXC89542.1\|941369_944126_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP029999.1\|AXC89554.1\|958325_960038_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP029999.1\|AXC89549.1\|951972_953271_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP029999.1\|AXC89543.1\|944183_945479_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP029999.1\|AXC89545.1\|947849_948206_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP029999.1\|AXC89548.1\|950252_951890_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
CP029999.1\|AXC89557.1\|962272_963850_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP029999.1\|AXC89551.1\|954843_955641_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP029999.1\|AXC93082.1\|956019_956190_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP029999.1\|AXC89544.1\|945530_947765_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP029999.1\|AXC89555.1\|960113_960848_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP029999.1\|AXC89547.1\|949224_950025_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP029999.1\|AXC89546.1\|948171_948468_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194

Protein	Function_ID	Function_description	E-value
CP029999.1\|AXC89558.1\|963966_965013_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029999.1\|AXC89541.1\|940183_941326_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP029999.1\|AXC89552.1\|955728_956091_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP029999.1\|AXC89559.1\|965263_966172_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029999.1\|AXC89556.1\|960935_961889_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029999.1\|AXC89553.1\|956526_958326_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP029999.1\|AXC89550.1\|953406_954078_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP029999.1\|AXC89542.1\|941369_944126_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP029999.1\|AXC89554.1\|958325_960038_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP029999.1\|AXC89549.1\|951972_953271_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP029999.1\|AXC89543.1\|944183_945479_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP029999.1\|AXC89545.1\|947849_948206_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.86759e-20
CP029999.1\|AXC89548.1\|950252_951890_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP029999.1\|AXC89557.1\|962272_963850_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.36489e-90
CP029999.1\|AXC89551.1\|954843_955641_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.92352e-102
CP029999.1\|AXC89544.1\|945530_947765_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP029999.1\|AXC89555.1\|960113_960848_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
CP029999.1\|AXC89547.1\|949224_950025_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.77354e-159
CP029999.1\|AXC89546.1\|948171_948468_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12

>CP029999.1|AXC89550.1|953406_954078_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP029999.1|AXC89549.1|951972_953271_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP029999.1|AXC89548.1|950252_951890_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>CP029999.1|AXC89547.1|949224_950025_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNYQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVGKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP029999.1|AXC89546.1|948171_948468_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP029999.1|AXC89545.1|947849_948206_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPGENGKINAKGQ
>CP029999.1|AXC89544.1|945530_947765_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP029999.1|AXC89543.1|944183_945479_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSITLQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP029999.1|AXC89542.1|941369_944126_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP029999.1|AXC89541.1|940183_941326_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIVRDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP029999.1|AXC89551.1|954843_955641_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP029999.1|AXC89552.1|955728_956091_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP029999.1|AXC93082.1|956019_956190_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP029999.1|AXC89553.1|956526_958326_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRVPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP029999.1|AXC89554.1|958325_960038_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIESGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP029999.1|AXC89555.1|960113_960848_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP029999.1|AXC89556.1|960935_961889_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP029999.1|AXC89557.1|962272_963850_-|CRISPR-associated-helicase-Cas3'
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISNVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP029999.1|AXC89558.1|963966_965013_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP029999.1|AXC89559.1|965263_966172_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF

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Crispr_ID: CP029999_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029999_3

963863-963950

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029999_3

>merge|CP029999|3|963863-963950|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTAACGGATTAGGTAGTAACCTGAAACAGGGTGTTCCCCGCGCCAGCGGGGATAAAC

>CP029999|3|3|963863-963950|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCCTAACGGATTAGGTAGTAACCTGAAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029999.1\|AXC89558.1\|963966_965013_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP029999.1\|AXC89553.1\|956526_958326_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP029999.1\|AXC89554.1\|958325_960038_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP029999.1\|AXC89561.1\|967607_968213_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029999.1\|AXC89556.1\|960935_961889_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP029999.1\|AXC89565.1\|969817_970297_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029999.1\|AXC89550.1\|953406_954078_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP029999.1\|AXC89555.1\|960113_960848_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP029999.1\|AXC89563.1\|968777_969089_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029999.1\|AXC89552.1\|955728_956091_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP029999.1\|AXC89549.1\|951972_953271_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP029999.1\|AXC89562.1\|968230_968587_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP029999.1\|AXC89559.1\|965263_966172_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP029999.1\|AXC89567.1\|971323_972085_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029999.1\|AXC89564.1\|969107_969818_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029999.1\|AXC89551.1\|954843_955641_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP029999.1\|AXC93082.1\|956019_956190_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP029999.1\|AXC89566.1\|970293_971343_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP029999.1\|AXC89560.1\|966181_967621_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP029999.1\|AXC89557.1\|962272_963850_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
CP029999.1\|AXC89558.1\|963966_965013_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029999.1\|AXC89553.1\|956526_958326_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP029999.1\|AXC89554.1\|958325_960038_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP029999.1\|AXC89561.1\|967607_968213_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
CP029999.1\|AXC89556.1\|960935_961889_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029999.1\|AXC89565.1\|969817_970297_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP029999.1\|AXC89550.1\|953406_954078_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP029999.1\|AXC89555.1\|960113_960848_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
CP029999.1\|AXC89552.1\|955728_956091_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP029999.1\|AXC89549.1\|951972_953271_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP029999.1\|AXC89562.1\|968230_968587_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP029999.1\|AXC89559.1\|965263_966172_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029999.1\|AXC89567.1\|971323_972085_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP029999.1\|AXC89564.1\|969107_969818_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP029999.1\|AXC89551.1\|954843_955641_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.92352e-102
CP029999.1\|AXC89563.1\|968777_969089_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP029999.1\|AXC89566.1\|970293_971343_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029999.1\|AXC89560.1\|966181_967621_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029999.1\|AXC89557.1\|962272_963850_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.36489e-90

>CP029999.1|AXC89557.1|962272_963850_-|CRISPR-associated-helicase-Cas3'
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISNVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP029999.1|AXC89556.1|960935_961889_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP029999.1|AXC89555.1|960113_960848_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP029999.1|AXC89554.1|958325_960038_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIESGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP029999.1|AXC89553.1|956526_958326_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRVPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP029999.1|AXC93082.1|956019_956190_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP029999.1|AXC89552.1|955728_956091_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP029999.1|AXC89551.1|954843_955641_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP029999.1|AXC89550.1|953406_954078_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP029999.1|AXC89549.1|951972_953271_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP029999.1|AXC89558.1|963966_965013_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP029999.1|AXC89559.1|965263_966172_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP029999.1|AXC89560.1|966181_967621_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP029999.1|AXC89561.1|967607_968213_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP029999.1|AXC89562.1|968230_968587_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP029999.1|AXC89563.1|968777_969089_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP029999.1|AXC89564.1|969107_969818_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP029999.1|AXC89565.1|969817_970297_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP029999.1|AXC89566.1|970293_971343_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNACNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP029999.1|AXC89567.1|971323_972085_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	CP029999.1	2647993-2648024	0	1.0

1. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to position: 2647993-2648024, mismatch: 0, identity: 1.0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NC_010392	Phage Gifsy-1, complete genome	8230-8261	0	1.0
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	MW013502	Salmonella virus L cI-40 13-am43, complete genome	31682-31724	0	1.0
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	NC_004348	Enterobacteria phage ST64T, complete genome	14884-14926	0	1.0
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	MW013503	Salmonella virus L cII-101, complete genome	31683-31725	0	1.0
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	14884-14926	0	1.0
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	MF188997	Salmonella phage vB_SalP_PM43, complete genome	14779-14821	0	1.0
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	9440-9471	1	0.969
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	65573-65604	1	0.969
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	87586-87617	1	0.969
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NC_010393	Phage Gifsy-2, complete genome	38576-38607	1	0.969
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	CP051272	Salmonella phage SW-70, complete genome	35821-35863	2	0.953
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	15044-15086	2	0.953
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	CP051278	Salmonella phage ST-87, complete genome	25853-25895	2	0.953
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	CP051288	Salmonella phage ST-29, complete genome	38695-38737	2	0.953
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	CP051285	Salmonella phage ST-32, complete genome	31789-31831	2	0.953
CP029999_4	4.1\|3091359\|43\|CP029999\|CRISPRCasFinder	3091359-3091401	43	NC_014900	Salmonella phage ST160, complete genome	15112-15154	2	0.953
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_AP020327	Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p1-JPH1	66325-66356	5	0.844
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	232048-232079	7	0.781
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	88878-88909	7	0.781
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	7992-8023	7	0.781
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	816560-816591	7	0.781
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	331601-331632	8	0.75
CP029999_2	2.5\|954564\|32\|CP029999\|PILER-CR,CRISPRCasFinder,CRT	954564-954595	32	MN807249	Mycobacterium phage Megiddo, complete genome	40628-40659	8	0.75
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	LR606152	Rhizobium sp. Q54 genome assembly, plasmid: 9	87306-87337	9	0.719
CP029999_2	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	NZ_LR134466	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence	6692-6723	9	0.719
CP029999_2	2.9\|954381\|32\|CP029999\|CRT	954381-954412	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	321477-321508	9	0.719
CP029999_2	2.4\|954503\|32\|CP029999\|PILER-CR,CRISPRCasFinder,CRT	954503-954534	32	GQ478088	Enterococcus phage phiFL4A, complete genome	32488-32519	10	0.688
CP029999_2	2.4\|954503\|32\|CP029999\|PILER-CR,CRISPRCasFinder,CRT	954503-954534	32	MG945146	UNVERIFIED: Microviridae sp. isolate 192-18011, partial genome	2565-2596	10	0.688

1. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

2. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

3. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

4. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

5. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

6. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

7. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

8. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

9. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

10. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

11. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

12. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

13. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

14. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

15. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

16. spacer 4.1|3091359|43|CP029999|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

17. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_AP020327 (Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p1-JPH1) position: , mismatch: 5, identity: 0.844

acgacgtccgcccggaggcgctg--cgacgtttt	CRISPR spacer
acgacgtccgcacggtggcgctgtccgacgat--	Protospacer
*********** *** *******  ***** *

18. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

19. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

20. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

21. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

22. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgtccgcccggaggcgctgcgacgtttt-	CRISPR spacer
tggacgtcctcccggaggtgctgcg-cgcgctg	Protospacer
  ******* ********.****** **. .*

23. spacer 2.5|954564|32|CP029999|PILER-CR,CRISPRCasFinder,CRT matches to MN807249 (Mycobacterium phage Megiddo, complete genome) position: , mismatch: 8, identity: 0.75

acgtggcgcgggatcataccgtgggataaaac	CRISPR spacer
gtgtggcgcggcatcatcccgtgggtcaagcc	Protospacer
..********* ***** ******* .**. *

24. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to LR606152 (Rhizobium sp. Q54 genome assembly, plasmid: 9) position: , mismatch: 9, identity: 0.719

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
cgcccggccgccaggaggcgctgcgacgccgt	Protospacer
    ** ***** ***************.. *

25. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to NZ_LR134466 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence) position: , mismatch: 9, identity: 0.719

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
gcagcgaccgcccggaggcgctgcgccgcacc	Protospacer
.*..** ****************** **. ..

26. spacer 2.9|954381|32|CP029999|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccctttccgccgactcaccgacgcgcccgg	CRISPR spacer
gaccgccgccgccgactcaccatcgcgcccgc	Protospacer
 .** .. *************. ********

27. spacer 2.4|954503|32|CP029999|PILER-CR,CRISPRCasFinder,CRT matches to GQ478088 (Enterococcus phage phiFL4A, complete genome) position: , mismatch: 10, identity: 0.688

gcttacgaagttctttacctgtacttggcgca	CRISPR spacer
tattacgcaggtctttacctgtacttttttag	Protospacer
  ***** ** ***************  .  .

28. spacer 2.4|954503|32|CP029999|PILER-CR,CRISPRCasFinder,CRT matches to MG945146 (UNVERIFIED: Microviridae sp. isolate 192-18011, partial genome) position: , mismatch: 10, identity: 0.688

gcttacgaagttctttacctgtacttggcgca	CRISPR spacer
agaaatatagttctttgcctatacttggcgct	Protospacer
.   *.. ********.***.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

638729 : 675095

Escherichia_phage(26.67%)

head,terminase,holin,tRNA,plate,lysis,tail,capsid,portal,integrase

attL 627953:627976|attR 677381:677404

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
627953:627976	attL	NA	NA	NA	NA
AXC89244.1\|638729_639767_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	8.8e-175	87.1
AXC89245.1\|639766_640342_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	8.9e-68	66.0
AXC89246.1\|640474_640738_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
AXC89247.1\|640768_641278_+	hypothetical protein	A0A0M4QWN1	Salmonella_phage	4.3e-90	99.4
AXC89248.1\|641285_641513_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	7.3e-34	90.7
AXC89249.1\|641499_641700_+	hypothetical protein	A0A0M5M7U3	Salmonella_phage	3.7e-29	92.4
AXC89250.1\|641766_642000_+	DUF2732 domain-containing protein	Q6K1F6	Salmonella_virus	1.1e-24	77.9
AXC89251.1\|641999_642227_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.1e-24	70.7
AXC89252.1\|642223_642532_+	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.1e-07	45.9
AXC89253.1\|642545_644786_+	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	92.2
AXC89254.1\|644902_645343_+	DinI family protein	A0A218M4I0	Erwinia_phage	5.4e-65	92.0
AXC89255.1\|645625_645925_+	hypothetical protein	NA	NA	NA	NA
AXC89256.1\|645961_646270_+	XRE family transcriptional regulator	E5E3S9	Burkholderia_phage	2.2e-12	39.2
AXC89257.1\|646247_647198_+	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	2.3e-36	37.7
AXC89258.1\|647337_647769_-	hypothetical protein	S4TUD6	Salmonella_phage	1.4e-70	95.1
AXC89259.1\|647767_647962_+	hypothetical protein	S4TRZ0	Salmonella_phage	3.4e-24	92.2
AXC89260.1\|647992_648262_-	hypothetical protein	Q2P9X2	Enterobacteria_phage	1.1e-25	82.6
AXC89261.1\|648481_649519_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	2.0e-163	79.3
AXC89262.1\|649518_651288_-	oxidoreductase	Q9T0R3	Escherichia_phage	1.5e-286	81.2
AXC89263.1\|651452_652316_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	2.2e-118	76.3
AXC89264.1\|652347_653508_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	9.6e-130	62.8
AXC89265.1\|653511_654270_+\|terminase	terminase	Q94MJ2	Enterobacteria_phage	2.3e-79	66.3
AXC89266.1\|654367_654868_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
AXC89267.1\|654867_655071_+\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
AXC89268.1\|655061_655283_+	primosomal protein	A0A218M4L5	Erwinia_phage	5.1e-24	71.2
AXC89269.1\|655266_655776_+	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
AXC89270.1\|655772_656186_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.3e-36	60.6
AXC89271.1\|656085_656331_+\|holin	holin	S4TNY4	Salmonella_phage	2.5e-27	73.1
AXC89272.1\|656293_656761_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	1.1e-55	69.7
AXC89273.1\|656753_657203_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.0e-50	69.4
AXC89274.1\|657271_657913_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.8e-96	82.2
AXC89275.1\|657909_658257_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	2.8e-40	70.4
AXC89276.1\|658261_659170_+\|plate	baseplate assembly protein	Q37840	Escherichia_phage	2.6e-138	83.8
AXC89277.1\|659162_659696_+\|tail	phage tail protein I	Q37841	Escherichia_phage	5.6e-93	88.6
AXC89278.1\|659703_661449_+\|tail	phage tail protein	Q37842	Escherichia_phage	9.2e-92	75.5
AXC89279.1\|661451_661976_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
AXC89280.1\|662105_663293_+\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.1e-189	82.8
AXC89281.1\|663305_663824_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.0e-71	75.6
AXC89282.1\|663886_664168_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.7e-30	79.1
AXC89283.1\|664200_664320_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
AXC89284.1\|664312_666742_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	2.3e-266	70.6
AXC89285.1\|666753_667218_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	5.9e-62	75.5
AXC89286.1\|667220_668414_+	phage late control D family protein	Q6K1G4	Salmonella_virus	2.3e-166	78.4
AXC89287.1\|668453_668672_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.6e-33	86.1
AXC89288.1\|669030_669537_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
AXC89289.1\|669660_671643_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AXC89290.1\|671657_673403_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AXC89291.1\|673638_673854_-	30S ribosomal protein S21	NA	NA	NA	NA
AXC89292.1\|674081_675095_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.2e-109	59.5
677381:677404	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1175148 : 1238371

Cronobacter_phage(57.89%)

head,terminase,tRNA,holin,tail,capsid,portal,integrase

attL 1183126:1183141|attR 1212503:1212518

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC89753.1\|1175148_1175916_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXC89754.1\|1175956_1176304_+	50S ribosomal protein L19	NA	NA	NA	NA
AXC89755.1\|1176460_1177681_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
AXC89756.1\|1177673_1178192_-	YfiR family protein	NA	NA	NA	NA
AXC89757.1\|1178631_1179702_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AXC89758.1\|1179711_1180833_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AXC89759.1\|1180890_1181799_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AXC89760.1\|1181759_1182920_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AXC93089.1\|1183019_1183067_-	hypothetical protein	NA	NA	NA	NA
1183126:1183141	attL	NA	NA	NA	NA
AXC89761.1\|1183230_1184250_-\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	1.4e-108	58.2
AXC89762.1\|1184289_1184595_-	XRE family transcriptional regulator	A0A0M5M1I9	Salmonella_phage	1.6e-15	47.5
AXC89763.1\|1184692_1185031_+	hypothetical protein	NA	NA	NA	NA
AXC89764.1\|1185056_1185389_+	hypothetical protein	NA	NA	NA	NA
AXC89765.1\|1185398_1185968_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.6e-43	46.3
AXC89766.1\|1185970_1186189_+	hypothetical protein	NA	NA	NA	NA
AXC89767.1\|1186227_1188885_+	bifunctional DNA primase/helicase	A0A077K8T2	Ralstonia_phage	1.2e-244	47.5
AXC89768.1\|1188912_1189236_-	transcriptional regulator	F1BUM8	Cronobacter_phage	1.3e-36	73.1
AXC89769.1\|1189235_1190255_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.3e-135	68.5
AXC89770.1\|1190251_1192036_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.8e-247	69.7
AXC89771.1\|1192093_1193083_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.5e-46	52.3
AXC89772.1\|1193117_1194146_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.7e-133	71.6
AXC89773.1\|1194157_1194856_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.6e-63	52.6
AXC89774.1\|1194954_1195407_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.2e-48	64.7
AXC89775.1\|1195403_1195886_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-37	48.7
AXC89776.1\|1195882_1196587_+	hypothetical protein	F1BUL6	Cronobacter_phage	4.0e-70	59.5
AXC89777.1\|1196583_1197711_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	8.1e-174	82.9
AXC89778.1\|1197707_1198163_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.7e-58	71.5
AXC89779.1\|1198175_1198472_+\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
AXC89780.1\|1198468_1198810_+	M15 family peptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
AXC89781.1\|1198809_1199142_+	hypothetical protein	F1BUL2	Cronobacter_phage	4.4e-35	70.0
AXC89782.1\|1199068_1199302_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.7e-30	83.1
AXC89783.1\|1199279_1199546_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.4e-20	61.0
AXC89784.1\|1199733_1201701_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.9e-271	70.7
AXC89785.1\|1201697_1202027_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
AXC89786.1\|1202023_1203208_+	hypothetical protein	F1BUK6	Cronobacter_phage	5.1e-179	78.6
AXC89787.1\|1203194_1203788_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.4e-89	82.1
AXC89788.1\|1203797_1205810_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
AXC89789.1\|1205812_1206343_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
AXC89790.1\|1206332_1207058_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.8e-68	56.4
AXC89791.1\|1207029_1207575_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.5e-58	71.4
AXC89792.1\|1207574_1209278_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.7e-223	81.3
AXC89793.1\|1210395_1211868_+	hypothetical protein	NA	NA	NA	NA
AXC89794.1\|1212003_1212390_-	hypothetical protein	NA	NA	NA	NA
AXC89795.1\|1212547_1212886_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
1212503:1212518	attR	NA	NA	NA	NA
AXC89796.1\|1213157_1213895_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AXC89797.1\|1214026_1215007_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AXC89798.1\|1215003_1215735_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AXC89799.1\|1215864_1218438_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	3.4e-127	35.5
AXC89800.1\|1218633_1218834_-	hypothetical protein	NA	NA	NA	NA
AXC89801.1\|1224171_1224627_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	8.6e-34	49.3
AXC89802.1\|1224730_1226032_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
AXC89803.1\|1226028_1226352_-	YfiM family lipoprotein	NA	NA	NA	NA
AXC89804.1\|1226396_1227752_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AXC89805.1\|1227866_1230527_-	protein lysine acetyltransferase Pat	NA	NA	NA	NA
AXC89806.1\|1230580_1231261_-	DTW domain-containing protein	NA	NA	NA	NA
AXC89807.1\|1231333_1231753_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AXC89808.1\|1231956_1232994_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AXC89809.1\|1233109_1233799_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AXC89810.1\|1234117_1234501_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AXC89811.1\|1234562_1235150_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
AXC93090.1\|1235252_1236152_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXC89812.1\|1236169_1237504_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AXC89813.1\|1237633_1238371_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1689746 : 1698917

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC90210.1\|1689746_1690694_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AXC90211.1\|1690677_1691409_+	ABC transporter permease	NA	NA	NA	NA
AXC90212.1\|1691389_1691497_-	hypothetical protein	NA	NA	NA	NA
AXC90213.1\|1691556_1692288_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXC90214.1\|1692510_1694196_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXC90215.1\|1694192_1694912_+	DNA-binding response regulator	NA	NA	NA	NA
AXC90216.1\|1694958_1695426_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXC90217.1\|1695482_1696013_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXC90218.1\|1696184_1696643_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
AXC90219.1\|1696883_1698917_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	27.6

DBSCAN-SWA_4

1766109 : 1776616

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC90274.1\|1766109_1767513_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	26.5
AXC90275.1\|1767690_1768584_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXC90276.1\|1768960_1770046_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXC90277.1\|1770045_1770945_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.7e-30	36.0
AXC90278.1\|1770992_1771871_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
AXC90279.1\|1771871_1772423_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AXC90280.1\|1772428_1773403_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXC90281.1\|1773418_1774192_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXC90282.1\|1774196_1775276_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
AXC90283.1\|1775302_1776616_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1859163 : 1866400

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC90363.1\|1859163_1859583_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXC90364.1\|1859585_1860854_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.4e-227	92.4
AXC90365.1\|1861308_1861521_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXC93108.1\|1861531_1861720_+	cold-shock protein	NA	NA	NA	NA
AXC90366.1\|1861980_1863159_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	7.3e-109	56.7
AXC90367.1\|1863809_1864109_+	hypothetical protein	NA	NA	NA	NA
AXC90368.1\|1864200_1864896_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AXC90369.1\|1864969_1866400_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2151110 : 2157767

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC90655.1\|2151110_2151917_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	4.6e-14	27.4
AXC90656.1\|2151918_2152911_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
AXC90657.1\|2152910_2153801_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
AXC90658.1\|2154623_2155346_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	4.3e-35	38.9
AXC90659.1\|2155816_2155999_+	hypothetical protein	S4TSR3	Salmonella_phage	1.0e-22	77.6
AXC90660.1\|2156248_2156389_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	6.5e-09	77.1
AXC90661.1\|2156427_2156727_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	3.2e-13	54.3
AXC90662.1\|2156653_2157079_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
AXC90663.1\|2157452_2157767_+	recombinase family protein	A0A1S6L009	Salmonella_phage	4.3e-40	86.1

DBSCAN-SWA_7

2632163 : 2639401

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC91127.1\|2632163_2632403_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AXC93139.1\|2633282_2634092_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AXC91128.1\|2634164_2634542_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AXC91129.1\|2634689_2635232_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AXC91130.1\|2635415_2636144_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.2e-61	52.5
AXC91131.1\|2636160_2636574_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7
AXC91132.1\|2637618_2638743_-	DUF3626 domain-containing protein	NA	NA	NA	NA
AXC91133.1\|2639188_2639401_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7

DBSCAN-SWA_8

2644679 : 2692497

Enterobacteria_phage(38.1%)

head,terminase,tRNA,transposase,lysis,tail,capsid,portal,integrase

attL 2639137:2639152|attR 2688398:2688413

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2639137:2639152	attL	NA	NA	NA	NA
AXC91137.1\|2644679_2644796_+\|tail	phage tail protein	NA	NA	NA	NA
AXC91138.1\|2644986_2645187_+	phage virulence factor	NA	NA	NA	NA
AXC91139.1\|2645284_2645869_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-87	84.8
AXC91140.1\|2645868_2648310_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	7.3e-87	62.0
AXC91141.1\|2648363_2648606_-	hypothetical protein	NA	NA	NA	NA
AXC91142.1\|2648644_2652007_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.9
AXC91143.1\|2652068_2652716_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
AXC91144.1\|2652613_2653351_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
AXC91145.1\|2653357_2654056_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	7.9e-103	75.4
AXC91146.1\|2654065_2654395_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
AXC91147.1\|2654397_2657493_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.3e-277	61.6
AXC91148.1\|2657464_2657803_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AXC91149.1\|2657799_2658195_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AXC91150.1\|2658245_2658992_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AXC91151.1\|2658999_2659401_-\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AXC91152.1\|2659509_2660640_+\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	1.9e-215	99.2
AXC91153.1\|2660688_2661267_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.7e-82	80.7
AXC91154.1\|2661294_2661678_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
AXC91155.1\|2661688_2662054_-	DNA packaging protein	NA	NA	NA	NA
AXC91156.1\|2662111_2663140_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AXC91157.1\|2663194_2663542_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AXC91158.1\|2663554_2665051_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.3e-98	52.7
AXC91159.1\|2665040_2666621_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
AXC91160.1\|2666617_2666821_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	9.5e-17	72.3
AXC91161.1\|2666804_2668736_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.8e-258	65.7
AXC91162.1\|2668707_2669253_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AXC91163.1\|2669297_2669504_-	hypothetical protein	NA	NA	NA	NA
AXC91164.1\|2669538_2669940_+	inhibitor of g-type lysozyme	NA	NA	NA	NA
AXC91165.1\|2670166_2670631_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.8e-58	84.7
AXC91166.1\|2670731_2671271_-	lysozyme	S5MQK2	Escherichia_phage	4.4e-77	74.1
AXC93140.1\|2671248_2671551_-	alpha/beta hydrolase	NA	NA	NA	NA
AXC93141.1\|2671800_2672256_+	DUF2441 domain-containing protein	NA	NA	NA	NA
AXC91167.1\|2672267_2672486_-	hypothetical protein	NA	NA	NA	NA
AXC91168.1\|2672639_2672828_-	hypothetical protein	NA	NA	NA	NA
AXC91169.1\|2672962_2673151_+	hypothetical protein	NA	NA	NA	NA
AXC91170.1\|2673070_2673628_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	9.5e-51	78.5
AXC91171.1\|2673677_2673902_-	hypothetical protein	NA	NA	NA	NA
AXC91172.1\|2673898_2674453_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.4e-64	65.3
AXC91173.1\|2674449_2674746_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	3.9e-35	79.1
AXC91174.1\|2674727_2674922_-	hypothetical protein	S4TNP0	Salmonella_phage	1.4e-12	61.5
AXC91175.1\|2674918_2675518_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	3.3e-97	82.9
AXC91176.1\|2675581_2675830_-	hypothetical protein	NA	NA	NA	NA
AXC91177.1\|2676363_2676870_-	hypothetical protein	NA	NA	NA	NA
AXC91178.1\|2677172_2677550_-	DUF977 family protein	A0A088CBK9	Shigella_phage	2.2e-14	36.1
AXC91179.1\|2677567_2678320_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	8.5e-103	76.1
AXC91180.1\|2678326_2679196_-	DNA-binding protein	A0A088CD36	Shigella_phage	6.9e-32	58.5
AXC91181.1\|2679240_2679735_-	hypothetical protein	NA	NA	NA	NA
AXC91182.1\|2679721_2679976_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
AXC91183.1\|2680072_2680498_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	9.3e-14	56.3
AXC91184.1\|2680808_2680964_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	4.7e-08	55.3
AXC91185.1\|2681342_2681627_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
AXC91186.1\|2681701_2682037_+	hypothetical protein	NA	NA	NA	NA
AXC91187.1\|2682177_2684868_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	6.8e-118	83.5
AXC91188.1\|2685725_2686046_+	hypothetical protein	A0A222YY67	Escherichia_phage	1.8e-33	59.2
AXC91189.1\|2686038_2686371_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
AXC91190.1\|2686367_2686919_+	Eaa protein	A0A192Y7X3	Salmonella_phage	2.8e-10	34.5
AXC91191.1\|2686968_2687205_+	excisionase	NA	NA	NA	NA
AXC91192.1\|2687194_2688337_+\|integrase	integrase	O21929	Phage_21	1.8e-173	80.0
AXC91193.1\|2688450_2689701_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
2688398:2688413	attR	NA	NA	NA	NA
AXC91194.1\|2689872_2690538_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AXC91195.1\|2690534_2690864_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AXC91196.1\|2690875_2691337_+	NUDIX hydrolase	NA	NA	NA	NA
AXC91197.1\|2691390_2692497_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_9

3062506 : 3101815

Salmonella_phage(67.74%)

coat,protease,terminase,holin,lysis,tail,portal,integrase

attL 3062052:3062074|attR 3101881:3101903

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3062052:3062074	attL	NA	NA	NA	NA
AXC91542.1\|3062506_3062869_+	GtrA family protein	I1TED9	Salmonella_phage	5.0e-61	99.2
AXC91543.1\|3062865_3063798_+	glycosyltransferase	I1TED8	Salmonella_phage	1.8e-174	99.0
AXC91544.1\|3063787_3065245_+	hypothetical protein	A0A192Y7W8	Salmonella_phage	3.2e-239	99.0
AXC91545.1\|3065303_3067307_-	endorhamnosidase	A0A192Y6X2	Salmonella_phage	0.0e+00	99.6
AXC91546.1\|3067442_3067694_+	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	4.1e-38	98.8
AXC91547.1\|3067710_3068130_-	hypothetical protein	B9UDL3	Salmonella_phage	1.3e-73	100.0
AXC91548.1\|3068247_3068577_+	hypothetical protein	NA	NA	NA	NA
AXC91549.1\|3068596_3070438_-	DNA transfer protein	A0A192Y934	Salmonella_phage	4.3e-257	78.3
AXC93150.1\|3070437_3071775_-	DNA transfer protein	I1TEJ5	Salmonella_phage	1.1e-233	95.7
AXC91550.1\|3071817_3072507_-	DNA transfer protein	I1TEJ4	Salmonella_phage	6.4e-89	95.6
AXC91551.1\|3072509_3072965_-	DUF2824 family protein	A0A1R3Y5P3	Salmonella_virus	8.2e-85	98.0
AXC91552.1\|3072964_3073666_-\|tail	phage tail protein	C6ZR14	Salmonella_phage	2.8e-76	97.9
AXC91553.1\|3073669_3075088_-	hypothetical protein	I1TEJ1	Salmonella_phage	4.0e-271	97.2
AXC91554.1\|3075047_3075548_-	hypothetical protein	I1TEJ0	Salmonella_phage	8.7e-88	98.2
AXC91555.1\|3075531_3075741_-	hypothetical protein	A0A192Y697	Salmonella_phage	1.3e-32	100.0
AXC91556.1\|3075779_3077072_-\|coat	coat protein	C6ZR10	Salmonella_phage	3.2e-243	99.3
AXC91557.1\|3077071_3077983_-	scaffolding protein	I6S5W6	Salmonella_phage	1.1e-160	99.7
AXC91558.1\|3077996_3080174_-\|portal	portal protein	Q5C835	Enterobacteria_phage	0.0e+00	99.3
AXC91559.1\|3080173_3081673_-\|terminase	terminase	A0A2H4FUR5	Salmonella_phage	4.8e-307	100.0
AXC91560.1\|3081650_3082139_-	DNA-packaging protein	O80290	Bacteriophage	2.9e-88	100.0
AXC91561.1\|3082142_3082547_-	Decoration protein	A0A192Y6U9	Salmonella_phage	1.5e-66	99.3
AXC91562.1\|3082549_3082792_-	DUF2560 family protein	A0A192Y6S9	Salmonella_phage	1.0e-33	100.0
AXC93151.1\|3083115_3083637_-	DNA-binding protein	H6WRZ8	Salmonella_phage	1.9e-101	100.0
AXC91563.1\|3083849_3084320_-\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	1.1e-63	86.8
AXC91564.1\|3084316_3084754_-	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
AXC91565.1\|3084737_3085064_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
AXC91566.1\|3085199_3085409_-	hypothetical protein	M1E3N9	Enterobacteria_phage	2.2e-32	97.1
AXC91567.1\|3085498_3086122_-	antitermination protein	K7PM87	Enterobacteria_phage	8.3e-96	87.0
AXC91568.1\|3086118_3086307_-	protein ninH	K7PH29	Enterobacteria_phage	1.9e-27	100.0
AXC91569.1\|3086303_3086666_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	5.0e-61	97.5
AXC91570.1\|3086662_3086953_-	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	1.0e-51	100.0
AXC91571.1\|3086945_3087158_-	hypothetical protein	K7PK10	Enterobacteria_phage	4.7e-35	98.6
AXC91572.1\|3087150_3087327_-	protein ninF	A0A220NRM2	Escherichia_phage	1.9e-26	100.0
AXC91573.1\|3087319_3087661_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	2.1e-64	100.0
AXC91574.1\|3087663_3087840_-	NinE family protein	C6ZR57	Salmonella_phage	3.0e-27	98.3
AXC91575.1\|3087821_3087980_-	protein ninD	Q8HAF7	Salmonella_phage	6.0e-27	94.2
AXC91576.1\|3087976_3088423_-	recombination protein NinB	I6R0N7	Salmonella_phage	1.2e-80	99.3
AXC91577.1\|3088379_3088676_-	hypothetical protein	E7C9R7	Salmonella_phage	2.6e-47	99.0
AXC91578.1\|3088678_3088939_-	hypothetical protein	Q8HAG0	Salmonella_phage	9.9e-43	98.8
AXC91579.1\|3088938_3089148_-	hypothetical protein	A0A1R3Y5S8	Salmonella_virus	7.0e-31	98.6
AXC91580.1\|3089157_3089430_-	DUF4752 family protein	A0A220NQX8	Salmonella_phage	4.2e-44	100.0
AXC91581.1\|3089504_3090956_-	helicase DnaB	Q08J37	Stx2-converting_phage	8.0e-275	99.0
AXC91582.1\|3090930_3091830_-	DNA replication protein	A0A220NQX5	Salmonella_phage	1.5e-154	99.3
AXC91583.1\|3091822_3091969_-	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
AXC91584.1\|3092003_3092282_-	hypothetical protein	A0A220NRS4	Escherichia_phage	3.8e-40	92.4
AXC91585.1\|3092388_3092574_-	hypothetical protein	Q5G8T3	Enterobacteria_phage	5.4e-27	100.0
AXC91586.1\|3092654_3093305_+	LexA family transcriptional regulator	B1B6L9	Salmonella_phage	2.1e-121	99.5
AXC91587.1\|3093643_3093979_+	hypothetical protein	Q5G8T5	Enterobacteria_phage	1.7e-47	87.9
AXC91588.1\|3094057_3094252_+	restriction endonuclease	E7C9Q6	Salmonella_phage	2.5e-30	100.0
AXC91589.1\|3094869_3095148_+	hypothetical protein	C6ZR42	Salmonella_phage	1.3e-45	100.0
AXC93152.1\|3095465_3095627_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	E7C9Q3	Salmonella_phage	4.9e-24	100.0
AXC91590.1\|3095619_3095733_+	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
AXC91591.1\|3095729_3095918_+	hypothetical protein	C6ZR38	Salmonella_phage	8.5e-28	98.4
AXC91592.1\|3095926_3096634_+	recombinase	E7C9Q0	Salmonella_phage	1.0e-137	97.9
AXC91593.1\|3096633_3096918_+	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
AXC91594.1\|3096964_3097258_+	DUF2856 family protein	E7C9P8	Salmonella_phage	2.7e-49	97.9
AXC91595.1\|3097268_3097439_+	DUF2737 family protein	I6S642	Salmonella_phage	6.1e-25	100.0
AXC91596.1\|3097435_3097813_+	Eae protein	I6R9B7	Salmonella_phage	5.1e-64	100.0
AXC91597.1\|3097922_3098282_+	Eaf protein	T1SA95	Salmonella_phage	1.1e-60	92.4
AXC93153.1\|3098431_3098917_+	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	2.2e-59	78.3
AXC91598.1\|3098916_3099672_+	hypothetical protein	H6WRY1	Salmonella_phage	4.2e-150	99.6
AXC91599.1\|3100548_3100767_+	excisionase	A0A1V0E5M4	Salmonella_phage	5.7e-36	100.0
AXC91600.1\|3100744_3101815_+\|integrase	integrase	A0A1V0E5M7	Salmonella_phage	6.8e-154	99.3
3101881:3101903	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3533912 : 3575273

Shigella_phage(63.64%)

head,protease,terminase,holin,plate,tail,capsid,portal,integrase

attL 3532397:3532444|attR 3571380:3571427

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3532397:3532444	attL	NA	NA	NA	NA
AXC91988.1\|3533912_3534476_-	recombinase family protein	K7PJT4	Enterobacteria_phage	3.4e-80	79.1
AXC91989.1\|3535000_3535723_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AXC91990.1\|3535919_3536327_-\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	1.8e-59	84.2
AXC91991.1\|3536333_3537416_-\|tail	phage tail protein	U5P0I1	Shigella_phage	1.9e-50	96.2
AXC91992.1\|3537419_3538004_-	DUF2313 domain-containing protein	O22003	Shigella_phage	1.1e-113	100.0
AXC91993.1\|3537994_3539053_-\|plate	phage baseplate protein	Q8SBG4	Shigella_phage	5.2e-199	98.6
AXC91994.1\|3539039_3539468_-\|tail	phage tail protein	U5P0R9	Shigella_phage	2.3e-81	100.0
AXC91995.1\|3539464_3540013_-\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	1.9e-96	97.8
AXC91996.1\|3540012_3541092_-\|plate	baseplate protein	Q8SBG7	Shigella_phage	5.3e-207	99.7
AXC91997.1\|3541088_3542417_-	DNA circularization protein	Q8SBG8	Shigella_phage	8.4e-247	99.3
AXC91998.1\|3542507_3543020_-	hypothetical protein	NA	NA	NA	NA
AXC91999.1\|3543101_3544934_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	8.8e-303	98.9
AXC92000.1\|3544926_3545109_-	hypothetical protein	NA	NA	NA	NA
AXC92001.1\|3545075_3545345_-\|tail	phage tail assembly protein	S5FNR3	Shigella_phage	3.5e-43	100.0
AXC92002.1\|3545344_3545701_-\|tail	phage tail protein	U5P076	Shigella_phage	5.3e-63	100.0
AXC92003.1\|3545700_3547197_-\|tail	phage tail protein	M1FN90	Enterobacteria_phage	7.7e-273	99.0
AXC92004.1\|3547180_3547351_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
AXC92005.1\|3547359_3547920_-	hypothetical protein	M1FQV7	Enterobacteria_phage	2.3e-105	99.5
AXC92006.1\|3547916_3548423_-	hypothetical protein	M1FPE2	Enterobacteria_phage	5.0e-91	99.4
AXC92007.1\|3548397_3548808_-\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
AXC92008.1\|3548804_3549128_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
AXC92009.1\|3549102_3549330_-	hypothetical protein	S5FNU1	Shigella_phage	2.2e-22	94.9
AXC92010.1\|3549379_3550585_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	3.5e-223	99.5
AXC92011.1\|3550599_3551295_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	6.2e-124	98.7
AXC92012.1\|3551236_3552478_-\|portal	phage portal protein	U5P411	Shigella_phage	5.0e-241	99.5
AXC92013.1\|3552477_3552660_-	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
AXC92014.1\|3552671_3554405_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	100.0
AXC92015.1\|3554418_3554913_-\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	1.6e-86	99.4
AXC92016.1\|3555029_3555380_-	HNH endonuclease	Q8SBD7	Shigella_phage	3.6e-64	99.1
AXC92017.1\|3555563_3555956_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	3.1e-56	89.2
AXC92018.1\|3555939_3556416_-	lysozyme	S5FV07	Shigella_phage	2.4e-87	97.5
AXC92019.1\|3556419_3556755_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	5.2e-60	100.0
AXC92020.1\|3556831_3557884_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	9.8e-206	98.9
AXC92021.1\|3558033_3558348_-	hypothetical protein	S5MQK8	Escherichia_phage	1.5e-29	90.7
AXC92022.1\|3558477_3559230_-	antitermination protein	Q8SBE4	Shigella_phage	2.8e-138	100.0
AXC92023.1\|3559243_3560233_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	9.5e-195	99.4
AXC92024.1\|3560240_3561050_-	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	1.8e-151	99.6
AXC92025.1\|3561069_3561459_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
AXC92026.1\|3561455_3561782_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	4.5e-53	98.1
AXC92027.1\|3561778_3562432_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	4.7e-126	98.6
AXC92028.1\|3562431_3562926_-	PerC family transcriptional regulator	K7PJR0	Enterobacteria_phage	3.3e-87	98.8
AXC92029.1\|3562922_3563741_-	helix-turn-helix domain-containing protein	Q8SBF1	Shigella_phage	1.8e-122	100.0
AXC93177.1\|3563737_3563962_-	hypothetical protein	A0A291AX25	Escherichia_phage	5.9e-36	95.9
AXC92030.1\|3563966_3564803_-	ash family protein	A0A291AWU3	Escherichia_phage	2.2e-152	99.6
AXC93178.1\|3564799_3565351_-	hypothetical protein	Q8SBF4	Shigella_phage	7.6e-101	100.0
AXC92031.1\|3565394_3565595_-	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
AXC92032.1\|3565685_3566360_+	LexA family transcriptional repressor	Q8SBF6	Shigella_phage	1.2e-132	100.0
AXC92033.1\|3566772_3566964_-	hypothetical protein	S5FM78	Shigella_phage	3.3e-27	100.0
AXC92034.1\|3567105_3567330_-	hypothetical protein	A0A291AWX8	Escherichia_phage	3.4e-15	63.1
AXC92035.1\|3567384_3567765_+	hypothetical protein	U5P4J6	Shigella_phage	3.3e-63	100.0
AXC92036.1\|3567830_3568655_+	DUF2303 family protein	U5P439	Shigella_phage	1.7e-149	99.6
AXC92037.1\|3568782_3569319_+	HD family hydrolase	U5P0T3	Shigella_phage	4.3e-101	100.0
AXC92038.1\|3569309_3569672_+	hypothetical protein	U5P092	Shigella_phage	2.1e-67	100.0
AXC92039.1\|3569671_3569977_+	hypothetical protein	U5P0J0	Shigella_phage	6.8e-51	100.0
AXC92040.1\|3570203_3571367_+\|integrase	integrase	U5P434	Shigella_phage	2.4e-229	100.0
AXC92041.1\|3571572_3572823_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.0e-97	48.0
3571380:3571427	attR	NA	NA	NA	NA
AXC92042.1\|3572834_3573938_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
AXC92043.1\|3574220_3575273_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.5e-113	58.8

DBSCAN-SWA_11

3702966 : 3759374

uncultured_Caudovirales_phage(46.67%)

head,protease,terminase,tRNA,tail,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC92148.1\|3702966_3704394_-\|protease	periplasmic serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	4.2e-26	29.2
AXC92149.1\|3704523_3706041_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
AXC92150.1\|3706125_3706824_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
AXC92151.1\|3706816_3707617_+	cobalamin-binding protein	NA	NA	NA	NA
AXC92152.1\|3707653_3708277_+	hypothetical protein	NA	NA	NA	NA
AXC92153.1\|3708377_3708722_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.0e-26	50.5
AXC92154.1\|3708803_3710225_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
AXC92155.1\|3710394_3711675_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
AXC93184.1\|3711759_3713799_-	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
AXC92156.1\|3713813_3714704_-	Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	NA	NA	NA	NA
AXC92157.1\|3714703_3715501_-	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC	G9BWD6	Planktothrix_phage	4.6e-14	27.4
AXC92158.1\|3715549_3717793_-	ferrichrome porin FhuA	NA	NA	NA	NA
AXC92159.1\|3718085_3720608_-	bifunctional glycosyl transferase/transpeptidase	NA	NA	NA	NA
AXC92160.1\|3720748_3723232_-	ATP-dependent helicase HrpB	A0A2H4UU36	Bodo_saltans_virus	3.1e-32	27.8
AXC92161.1\|3723259_3723790_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
AXC92162.1\|3723806_3724511_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA
AXC92163.1\|3724687_3725143_+	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA
AXC93185.1\|3725211_3726108_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
AXC92164.1\|3726248_3727667_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	1.4e-26	37.8
AXC92165.1\|3727663_3728143_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AXC92166.1\|3728546_3729140_+	fimbrial protein	NA	NA	NA	NA
AXC92167.1\|3729405_3730143_+	fimbrial chaperone	NA	NA	NA	NA
AXC92168.1\|3730163_3732809_+	outer membrane usher protein	NA	NA	NA	NA
AXC92169.1\|3732795_3733362_+	fimbrial protein	NA	NA	NA	NA
AXC92170.1\|3733376_3733985_+	fimbrial protein	NA	NA	NA	NA
AXC92171.1\|3733984_3734581_+	fimbrial protein	NA	NA	NA	NA
AXC92172.1\|3734602_3735871_+	fimbrial-like adhesin	NA	NA	NA	NA
AXC92173.1\|3735992_3736787_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
AXC92174.1\|3736912_3737767_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
AXC92175.1\|3737861_3738242_+	aspartate 1-decarboxylase	NA	NA	NA	NA
AXC92176.1\|3738248_3739478_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
AXC92177.1\|3739539_3739980_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AXC92178.1\|3740345_3740897_+	fimbrial protein StiA	NA	NA	NA	NA
AXC92179.1\|3740944_3741628_+	long polar fimbrial chaperone LpfB	NA	NA	NA	NA
AXC92180.1\|3741654_3744201_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AXC92181.1\|3744209_3745286_+	fimbrial protein StiH	NA	NA	NA	NA
AXC92182.1\|3745403_3746174_-	ABC transporter permease	NA	NA	NA	NA
AXC92183.1\|3746170_3747097_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.9e-21	32.7
AXC92184.1\|3747205_3747868_+	carbonate dehydratase	NA	NA	NA	NA
AXC92185.1\|3747925_3748462_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.0e-17	33.1
AXC92186.1\|3749193_3749634_+	hypothetical protein	NA	NA	NA	NA
AXC92187.1\|3749758_3750052_-	hypothetical protein	NA	NA	NA	NA
AXC92188.1\|3750048_3751710_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	2.3e-278	82.8
AXC92189.1\|3751693_3752050_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	6.1e-51	83.8
AXC93186.1\|3752168_3752345_-	hypothetical protein	NA	NA	NA	NA
AXC92190.1\|3752337_3752778_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	9.1e-65	76.0
AXC92191.1\|3752777_3753080_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	1.4e-27	61.1
AXC92192.1\|3753072_3754287_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	9.9e-210	87.6
AXC92193.1\|3754288_3754849_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.6e-88	84.9
AXC92194.1\|3754903_3756073_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.7e-164	76.5
AXC92195.1\|3756346_3756595_-	hypothetical protein	NA	NA	NA	NA
AXC92196.1\|3756613_3757039_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AXC92197.1\|3757250_3759374_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	8.9e-174	50.6

Anti-CRISPR protein detection

Acr_ID: CP029999.1|AXC91180.1|2678326_2679196_-|DNA-binding-protein

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Acr_ID: CP029999.1|AXC91181.1|2679240_2679735_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP029999.1|AXC91180.1|2678326_2679196_-|DNA-binding-protein

2678326_2679196_-

289 aa aa

2644679-2692497

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP029999_2	Unclear	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	2648024-2647993	0

1. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to CP029999 position: 2648024-2647993, mismatch: 0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

CP029999.1|AXC91181.1|2679240_2679735_-|hypothetical-protein

2679240_2679735_-

164 aa aa

2644679-2692497

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP029999_2	Unclear	2.1\|954301\|32\|CP029999\|PILER-CR,CRISPRCasFinder	954301-954332	32	2648024-2647993	0

1. spacer 2.1|954301|32|CP029999|PILER-CR,CRISPRCasFinder matches to CP029999 position: 2648024-2647993, mismatch: 0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029999

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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