CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030002	Salmonella enterica subsp. enterica strain SA20064858 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,csa3,RT,DEDDh,DinG,cas14j	1	4	9	2
CP030003	Salmonella enterica subsp. enterica strain SA20064858 plasmid pSA20064858.1, complete sequence	0 crisprs	csa3,cas14j,c2c9_V-U4	0	0	1	0
CP030004	Salmonella enterica subsp. enterica strain SA20064858 plasmid pSA20064858.2, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030002_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030002_2

959345-959758

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

cas3

The CRISPR arrays of CP030002_2

>merge|CP030002|2|959345-959758|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGACGTCCGCCCGGAGGCGCTGCGACGTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGTTTATTTCCCATCCCTAACAGCCGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTACGAAGTTCTTTACCTGTACTTGGCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGCGCGGGATCATACCGTGGGATAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGGTGTCGTCAGTTATTTTATCCAGCAGTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP030002|2|1|959345-959697|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP030002|2|2|959345-959758|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP030002|2|1|959345-959758|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTTGTGTTCCCCGCGCCAGCGG
GGATAAACCGTGCCAGCGGGGATAAACCG	TGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP030002.1\|AXC94249.1\|958479_959151_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030002.1\|AXC94257.1\|968978_970025_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030002.1\|AXC94247.1\|955325_956963_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
CP030002.1\|AXC94254.1\|965125_965860_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030002.1\|AXC94248.1\|957045_958344_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030002.1\|AXC94255.1\|965947_966901_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030002.1\|AXC94242.1\|949257_950553_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP030002.1\|AXC94256.1\|967284_968862_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030002.1\|AXC97692.1\|961031_961202_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP030002.1\|AXC94252.1\|961538_963338_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030002.1\|AXC94251.1\|960740_961103_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030002.1\|AXC94241.1\|946443_949200_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP030002.1\|AXC94244.1\|952923_953280_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP030002.1\|AXC94246.1\|954297_955098_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP030002.1\|AXC94253.1\|963337_965050_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030002.1\|AXC94245.1\|953245_953542_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP030002.1\|AXC94243.1\|950604_952839_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP030002.1\|AXC94240.1\|945257_946400_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP030002.1\|AXC94258.1\|970275_971184_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030002.1\|AXC94250.1\|959855_960653_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158

Protein	Function_ID	Function_description	E-value
CP030002.1\|AXC94249.1\|958479_959151_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP030002.1\|AXC94257.1\|968978_970025_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030002.1\|AXC94247.1\|955325_956963_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030002.1\|AXC94254.1\|965125_965860_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
CP030002.1\|AXC94248.1\|957045_958344_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030002.1\|AXC94255.1\|965947_966901_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030002.1\|AXC94242.1\|949257_950553_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP030002.1\|AXC94256.1\|967284_968862_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.36489e-90
CP030002.1\|AXC94252.1\|961538_963338_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030002.1\|AXC94251.1\|960740_961103_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030002.1\|AXC94241.1\|946443_949200_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP030002.1\|AXC94244.1\|952923_953280_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.86759e-20
CP030002.1\|AXC94246.1\|954297_955098_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.77354e-159
CP030002.1\|AXC94253.1\|963337_965050_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030002.1\|AXC94245.1\|953245_953542_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
CP030002.1\|AXC94243.1\|950604_952839_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP030002.1\|AXC94240.1\|945257_946400_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP030002.1\|AXC94258.1\|970275_971184_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030002.1\|AXC94250.1\|959855_960653_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.92352e-102

>CP030002.1|AXC94249.1|958479_959151_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030002.1|AXC94248.1|957045_958344_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030002.1|AXC94247.1|955325_956963_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>CP030002.1|AXC94246.1|954297_955098_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNYQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVGKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030002.1|AXC94245.1|953245_953542_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP030002.1|AXC94244.1|952923_953280_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPGENGKINAKGQ
>CP030002.1|AXC94243.1|950604_952839_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP030002.1|AXC94242.1|949257_950553_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSITLQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP030002.1|AXC94241.1|946443_949200_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP030002.1|AXC94240.1|945257_946400_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIVRDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP030002.1|AXC94250.1|959855_960653_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030002.1|AXC94251.1|960740_961103_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030002.1|AXC97692.1|961031_961202_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP030002.1|AXC94252.1|961538_963338_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRVPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP030002.1|AXC94253.1|963337_965050_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIESGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030002.1|AXC94254.1|965125_965860_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030002.1|AXC94255.1|965947_966901_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP030002.1|AXC94256.1|967284_968862_-|CRISPR-associated-helicase-Cas3'
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISNVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP030002.1|AXC94257.1|968978_970025_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030002.1|AXC94258.1|970275_971184_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF

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Crispr_ID: CP030002_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030002_3

968875-968962

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP030002_3

>merge|CP030002|3|968875-968962|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTAACGGATTAGGTAGTAACCTGAAACAGGGTGTTCCCCGCGCCAGCGGGGATAAAC

>CP030002|3|3|968875-968962|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCCTAACGGATTAGGTAGTAACCTGAAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030002.1\|AXC94249.1\|958479_959151_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030002.1\|AXC94257.1\|968978_970025_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030002.1\|AXC94254.1\|965125_965860_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030002.1\|AXC94248.1\|957045_958344_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030002.1\|AXC94255.1\|965947_966901_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030002.1\|AXC94256.1\|967284_968862_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030002.1\|AXC94266.1\|976335_977097_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030002.1\|AXC97692.1\|961031_961202_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP030002.1\|AXC94252.1\|961538_963338_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030002.1\|AXC94260.1\|972619_973225_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030002.1\|AXC94265.1\|975305_976355_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP030002.1\|AXC94251.1\|960740_961103_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030002.1\|AXC94258.1\|970275_971184_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030002.1\|AXC94261.1\|973242_973599_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030002.1\|AXC94250.1\|959855_960653_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP030002.1\|AXC94253.1\|963337_965050_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030002.1\|AXC94262.1\|973789_974101_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030002.1\|AXC94264.1\|974829_975309_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030002.1\|AXC94259.1\|971193_972633_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP030002.1\|AXC94263.1\|974119_974830_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
CP030002.1\|AXC94249.1\|958479_959151_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP030002.1\|AXC94257.1\|968978_970025_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030002.1\|AXC94254.1\|965125_965860_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
CP030002.1\|AXC94248.1\|957045_958344_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030002.1\|AXC94255.1\|965947_966901_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030002.1\|AXC94256.1\|967284_968862_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.36489e-90
CP030002.1\|AXC94266.1\|976335_977097_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP030002.1\|AXC94252.1\|961538_963338_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030002.1\|AXC94260.1\|972619_973225_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
CP030002.1\|AXC94265.1\|975305_976355_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030002.1\|AXC94251.1\|960740_961103_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030002.1\|AXC94258.1\|970275_971184_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030002.1\|AXC94261.1\|973242_973599_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP030002.1\|AXC94250.1\|959855_960653_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.92352e-102
CP030002.1\|AXC94253.1\|963337_965050_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030002.1\|AXC94262.1\|973789_974101_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP030002.1\|AXC94264.1\|974829_975309_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP030002.1\|AXC94259.1\|971193_972633_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030002.1\|AXC94263.1\|974119_974830_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119

>CP030002.1|AXC94256.1|967284_968862_-|CRISPR-associated-helicase-Cas3'
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISNVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP030002.1|AXC94255.1|965947_966901_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP030002.1|AXC94254.1|965125_965860_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030002.1|AXC94253.1|963337_965050_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIESGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030002.1|AXC94252.1|961538_963338_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRVPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP030002.1|AXC97692.1|961031_961202_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP030002.1|AXC94251.1|960740_961103_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030002.1|AXC94250.1|959855_960653_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030002.1|AXC94249.1|958479_959151_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030002.1|AXC94248.1|957045_958344_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030002.1|AXC94257.1|968978_970025_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030002.1|AXC94258.1|970275_971184_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030002.1|AXC94259.1|971193_972633_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030002.1|AXC94260.1|972619_973225_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030002.1|AXC94261.1|973242_973599_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030002.1|AXC94262.1|973789_974101_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030002.1|AXC94263.1|974119_974830_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030002.1|AXC94264.1|974829_975309_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030002.1|AXC94265.1|975305_976355_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNACNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030002.1|AXC94266.1|976335_977097_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	CP030002.1	2661248-2661279	0	1.0

1. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to position: 2661248-2661279, mismatch: 0, identity: 1.0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NC_010392	Phage Gifsy-1, complete genome	8230-8261	0	1.0
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	9440-9471	1	0.969
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	65573-65604	1	0.969
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	87586-87617	1	0.969
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NC_010393	Phage Gifsy-2, complete genome	38576-38607	1	0.969
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_AP020327	Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p1-JPH1	66325-66356	5	0.844
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	232048-232079	7	0.781
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	88878-88909	7	0.781
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	7992-8023	7	0.781
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	816560-816591	7	0.781
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	331601-331632	8	0.75
CP030002_2	2.5\|959637\|32\|CP030002\|PILER-CR,CRISPRCasFinder,CRT	959637-959668	32	MN807249	Mycobacterium phage Megiddo, complete genome	40628-40659	8	0.75
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	LR606152	Rhizobium sp. Q54 genome assembly, plasmid: 9	87306-87337	9	0.719
CP030002_2	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	NZ_LR134466	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence	6692-6723	9	0.719
CP030002_2	2.8\|959454\|32\|CP030002\|CRT	959454-959485	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	321477-321508	9	0.719
CP030002_2	2.4\|959576\|32\|CP030002\|PILER-CR,CRISPRCasFinder,CRT	959576-959607	32	GQ478088	Enterococcus phage phiFL4A, complete genome	32488-32519	10	0.688
CP030002_2	2.4\|959576\|32\|CP030002\|PILER-CR,CRISPRCasFinder,CRT	959576-959607	32	MG945146	UNVERIFIED: Microviridae sp. isolate 192-18011, partial genome	2565-2596	10	0.688

1. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

2. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

3. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

4. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

5. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

6. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_AP020327 (Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p1-JPH1) position: , mismatch: 5, identity: 0.844

acgacgtccgcccggaggcgctg--cgacgtttt	CRISPR spacer
acgacgtccgcacggtggcgctgtccgacgat--	Protospacer
*********** *** *******  ***** *

7. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

8. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

9. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

10. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

11. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgtccgcccggaggcgctgcgacgtttt-	CRISPR spacer
tggacgtcctcccggaggtgctgcg-cgcgctg	Protospacer
  ******* ********.****** **. .*

12. spacer 2.5|959637|32|CP030002|PILER-CR,CRISPRCasFinder,CRT matches to MN807249 (Mycobacterium phage Megiddo, complete genome) position: , mismatch: 8, identity: 0.75

acgtggcgcgggatcataccgtgggataaaac	CRISPR spacer
gtgtggcgcggcatcatcccgtgggtcaagcc	Protospacer
..********* ***** ******* .**. *

13. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to LR606152 (Rhizobium sp. Q54 genome assembly, plasmid: 9) position: , mismatch: 9, identity: 0.719

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
cgcccggccgccaggaggcgctgcgacgccgt	Protospacer
    ** ***** ***************.. *

14. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to NZ_LR134466 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence) position: , mismatch: 9, identity: 0.719

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
gcagcgaccgcccggaggcgctgcgccgcacc	Protospacer
.*..** ****************** **. ..

15. spacer 2.8|959454|32|CP030002|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccctttccgccgactcaccgacgcgcccgg	CRISPR spacer
gaccgccgccgccgactcaccatcgcgcccgc	Protospacer
 .** .. *************. ********

16. spacer 2.4|959576|32|CP030002|PILER-CR,CRISPRCasFinder,CRT matches to GQ478088 (Enterococcus phage phiFL4A, complete genome) position: , mismatch: 10, identity: 0.688

gcttacgaagttctttacctgtacttggcgca	CRISPR spacer
tattacgcaggtctttacctgtacttttttag	Protospacer
  ***** ** ***************  .  .

17. spacer 2.4|959576|32|CP030002|PILER-CR,CRISPRCasFinder,CRT matches to MG945146 (UNVERIFIED: Microviridae sp. isolate 192-18011, partial genome) position: , mismatch: 10, identity: 0.688

gcttacgaagttctttacctgtacttggcgca	CRISPR spacer
agaaatatagttctttgcctatacttggcgct	Protospacer
.   *.. ********.***.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

608490 : 680274

Escherichia_phage(23.08%)

capsid,tRNA,plate,holin,portal,terminase,head,integrase,transposase,tail,lysis

attL 599889:599948|attR 646705:648033

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
599889:599948	attL	NA	NA	NA	NA
AXC93911.1\|608490_609699_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	4.4e-234	99.5
AXC93912.1\|609638_610124_-	hypothetical protein	A0A218M4H2	Erwinia_phage	4.9e-51	97.1
AXC93913.1\|610137_610446_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.1e-07	45.9
AXC93914.1\|610442_610670_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.1e-24	70.7
AXC93915.1\|610669_610903_-	DUF2732 domain-containing protein	Q6K1F6	Salmonella_virus	1.1e-24	77.9
AXC93916.1\|610969_611170_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	3.7e-29	92.4
AXC93917.1\|611156_611384_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	7.3e-34	90.7
AXC93918.1\|611391_611901_-	hypothetical protein	A0A0M4QWN1	Salmonella_phage	4.3e-90	99.4
AXC93919.1\|611931_612195_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
AXC93920.1\|612327_612903_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	8.9e-68	66.0
AXC93921.1\|612902_613940_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	8.8e-175	87.1
AXC97680.1\|613941_615267_+	hypothetical protein	NA	NA	NA	NA
AXC93922.1\|615570_616338_-	siderophore-interacting protein	NA	NA	NA	NA
AXC93923.1\|616569_617217_+	PadR family transcriptional regulator	NA	NA	NA	NA
AXC93924.1\|617213_618782_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-12	33.5
AXC93925.1\|619169_620690_-	PAS domain S-box protein	A0A1B0V854	Salmonella_phage	8.4e-33	47.8
AXC93926.1\|620977_621160_+	hypothetical protein	NA	NA	NA	NA
AXC93927.1\|621119_622499_+	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	2.9e-32	29.0
AXC93928.1\|622669_624688_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
AXC93929.1\|624768_625905_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
AXC93930.1\|625990_626488_+	M48 family peptidase	NA	NA	NA	NA
AXC93931.1\|626639_627332_+	vancomycin high temperature exclusion protein	NA	NA	NA	NA
AXC93932.1\|627420_628419_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
AXC93933.1\|628688_629657_+	hypothetical protein	I7HPH5	Enterobacteria_phage	5.0e-39	34.9
AXC93934.1\|629911_631156_+	serine/threonine transporter SstT	NA	NA	NA	NA
AXC93935.1\|631152_631353_-	hypothetical protein	NA	NA	NA	NA
AXC93936.1\|631605_632268_+	DedA family protein	NA	NA	NA	NA
AXC93937.1\|632271_632655_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
AXC93938.1\|632799_633168_+	DUF1090 domain-containing protein	NA	NA	NA	NA
AXC93939.1\|633209_633515_+	DUF883 domain-containing protein	NA	NA	NA	NA
AXC93940.1\|633517_633916_+	hypothetical protein	NA	NA	NA	NA
AXC93941.1\|633912_634212_+	hypothetical protein	NA	NA	NA	NA
AXC93942.1\|634366_634852_+	DoxX family protein	NA	NA	NA	NA
AXC93943.1\|634919_635906_+	glutathione S-transferase family protein	NA	NA	NA	NA
AXC93944.1\|636029_636395_+	DUF805 domain-containing protein	NA	NA	NA	NA
AXC93945.1\|636433_637330_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXC93946.1\|637434_638136_+	pirin family protein	NA	NA	NA	NA
AXC93947.1\|638159_638324_+	hypothetical protein	NA	NA	NA	NA
AXC93948.1\|638436_639747_-	serine dehydratase subunit alpha family protein	NA	NA	NA	NA
AXC97681.1\|639772_641104_-	hypothetical protein	NA	NA	NA	NA
AXC93949.1\|641419_642784_-	L-serine ammonia-lyase	NA	NA	NA	NA
AXC93950.1\|642853_645148_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	5.7e-158	41.2
AXC93951.1\|645181_646390_-	propionate kinase	NA	NA	NA	NA
AXC93952.1\|646811_648020_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	8.8e-235	99.8
AXC93953.1\|650081_650522_+	DinI family protein	A0A218M4I0	Erwinia_phage	5.4e-65	92.0
646705:648033	attR	NA	NA	NA	NA
AXC93954.1\|650804_651104_+	hypothetical protein	NA	NA	NA	NA
AXC93955.1\|651140_651449_+	XRE family transcriptional regulator	E5E3S9	Burkholderia_phage	2.2e-12	39.2
AXC93956.1\|651426_652377_+	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	2.3e-36	37.7
AXC93957.1\|652516_652948_-	hypothetical protein	S4TUD6	Salmonella_phage	1.4e-70	95.1
AXC93958.1\|652946_653141_+	hypothetical protein	S4TRZ0	Salmonella_phage	3.4e-24	92.2
AXC93959.1\|653171_653441_-	hypothetical protein	Q2P9X2	Enterobacteria_phage	1.1e-25	82.6
AXC93960.1\|653660_654698_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	2.0e-163	79.3
AXC93961.1\|654697_656467_-	oxidoreductase	Q9T0R3	Escherichia_phage	1.5e-286	81.2
AXC93962.1\|656631_657495_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	2.2e-118	76.3
AXC93963.1\|657526_658687_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	9.6e-130	62.8
AXC93964.1\|658690_659449_+\|terminase	terminase	Q94MJ2	Enterobacteria_phage	2.3e-79	66.3
AXC93965.1\|659546_660047_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
AXC93966.1\|660046_660250_+\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
AXC93967.1\|660240_660462_+	primosomal protein	A0A218M4L5	Erwinia_phage	5.1e-24	71.2
AXC93968.1\|660445_660955_+	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
AXC93969.1\|660951_661365_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.3e-36	60.6
AXC93970.1\|661264_661510_+\|holin	holin	S4TNY4	Salmonella_phage	2.5e-27	73.1
AXC93971.1\|661472_661940_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	1.1e-55	69.7
AXC93972.1\|661932_662382_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.0e-50	69.4
AXC93973.1\|662450_663092_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.8e-96	82.2
AXC93974.1\|663088_663436_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	2.8e-40	70.4
AXC93975.1\|663440_664349_+\|plate	baseplate assembly protein	Q37840	Escherichia_phage	2.6e-138	83.8
AXC93976.1\|664341_664875_+\|tail	phage tail protein I	Q37841	Escherichia_phage	5.6e-93	88.6
AXC93977.1\|664882_666628_+\|tail	phage tail protein	Q37842	Escherichia_phage	9.2e-92	75.5
AXC93978.1\|666630_667155_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
AXC93979.1\|667284_668472_+\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.1e-189	82.8
AXC93980.1\|668484_669003_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.0e-71	75.6
AXC93981.1\|669065_669347_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.7e-30	79.1
AXC93982.1\|669379_669499_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
AXC93983.1\|669491_671921_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	2.3e-266	70.6
AXC93984.1\|671932_672397_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	5.9e-62	75.5
AXC93985.1\|672399_673593_+	phage late control D family protein	Q6K1G4	Salmonella_virus	2.3e-166	78.4
AXC93986.1\|673632_673851_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.6e-33	86.1
AXC93987.1\|674209_674716_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
AXC93988.1\|674839_676822_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AXC93989.1\|676836_678582_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AXC93990.1\|678817_679033_-	30S ribosomal protein S21	NA	NA	NA	NA
AXC93991.1\|679260_680274_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.2e-109	59.5

DBSCAN-SWA_2

1184176 : 1247492

Cronobacter_phage(57.89%)

capsid,tRNA,holin,portal,terminase,head,integrase,tail

attL 1192154:1192169|attR 1221531:1221546

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC94454.1\|1184176_1184944_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXC94455.1\|1184984_1185332_+	50S ribosomal protein L19	NA	NA	NA	NA
AXC94456.1\|1185488_1186709_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
AXC94457.1\|1186701_1187220_-	YfiR family protein	NA	NA	NA	NA
AXC94458.1\|1187659_1188730_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AXC94459.1\|1188739_1189861_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AXC94460.1\|1189918_1190827_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AXC94461.1\|1190787_1191948_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AXC97701.1\|1192047_1192095_-	hypothetical protein	NA	NA	NA	NA
1192154:1192169	attL	NA	NA	NA	NA
AXC94462.1\|1192258_1193278_-\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	1.4e-108	58.2
AXC94463.1\|1193317_1193623_-	XRE family transcriptional regulator	A0A0M5M1I9	Salmonella_phage	1.6e-15	47.5
AXC94464.1\|1193720_1194059_+	hypothetical protein	NA	NA	NA	NA
AXC94465.1\|1194084_1194417_+	hypothetical protein	NA	NA	NA	NA
AXC94466.1\|1194426_1194996_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.6e-43	46.3
AXC94467.1\|1194998_1195217_+	hypothetical protein	NA	NA	NA	NA
AXC94468.1\|1195255_1197913_+	bifunctional DNA primase/helicase	A0A077K8T2	Ralstonia_phage	1.2e-244	47.5
AXC94469.1\|1197940_1198264_-	transcriptional regulator	F1BUM8	Cronobacter_phage	1.3e-36	73.1
AXC94470.1\|1198263_1199283_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.3e-135	68.5
AXC94471.1\|1199279_1201064_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.8e-247	69.7
AXC94472.1\|1201121_1202111_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.5e-46	52.3
AXC94473.1\|1202145_1203174_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.7e-133	71.6
AXC94474.1\|1203185_1203884_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.6e-63	52.6
AXC94475.1\|1203982_1204435_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.2e-48	64.7
AXC94476.1\|1204431_1204914_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-37	48.7
AXC94477.1\|1204910_1205615_+	hypothetical protein	F1BUL6	Cronobacter_phage	4.0e-70	59.5
AXC94478.1\|1205611_1206739_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	8.1e-174	82.9
AXC94479.1\|1206735_1207191_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.7e-58	71.5
AXC94480.1\|1207203_1207500_+\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
AXC94481.1\|1207496_1207838_+	M15 family peptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
AXC94482.1\|1207837_1208170_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.6e-35	70.0
AXC94483.1\|1208096_1208330_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.7e-30	83.1
AXC94484.1\|1208307_1208574_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.4e-20	61.0
AXC94485.1\|1208761_1210729_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.9e-271	70.7
AXC94486.1\|1210725_1211055_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
AXC94487.1\|1211051_1212236_+	hypothetical protein	F1BUK6	Cronobacter_phage	5.1e-179	78.6
AXC94488.1\|1212222_1212816_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.4e-89	82.1
AXC94489.1\|1212825_1214838_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
AXC94490.1\|1214840_1215371_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
AXC94491.1\|1215360_1216086_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.8e-68	56.4
AXC94492.1\|1216057_1216603_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.5e-58	71.4
AXC94493.1\|1216602_1218306_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.7e-223	81.3
AXC94494.1\|1219423_1220896_+	hypothetical protein	NA	NA	NA	NA
AXC94495.1\|1221031_1221418_-	hypothetical protein	NA	NA	NA	NA
AXC94496.1\|1221575_1221914_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
1221531:1221546	attR	NA	NA	NA	NA
AXC94497.1\|1222185_1222923_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AXC94498.1\|1223054_1224035_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AXC94499.1\|1224031_1224763_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AXC94500.1\|1224892_1227466_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	3.4e-127	35.5
AXC94501.1\|1227661_1227862_-	hypothetical protein	NA	NA	NA	NA
AXC94502.1\|1233292_1233748_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	8.6e-34	49.3
AXC94503.1\|1233851_1235153_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
AXC94504.1\|1235149_1235473_-	YfiM family lipoprotein	NA	NA	NA	NA
AXC94505.1\|1235517_1236873_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AXC94506.1\|1236987_1239648_-	protein lysine acetyltransferase Pat	NA	NA	NA	NA
AXC94507.1\|1239701_1240382_-	DTW domain-containing protein	NA	NA	NA	NA
AXC94508.1\|1240454_1240874_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AXC94509.1\|1241077_1242115_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AXC94510.1\|1242230_1242920_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AXC94511.1\|1243238_1243622_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AXC94512.1\|1243683_1244271_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
AXC97702.1\|1244373_1245273_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXC94513.1\|1245290_1246625_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AXC94514.1\|1246754_1247492_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1700331 : 1709502

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC94918.1\|1700331_1701279_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AXC94919.1\|1701262_1701994_+	ABC transporter permease	NA	NA	NA	NA
AXC94920.1\|1701974_1702082_-	hypothetical protein	NA	NA	NA	NA
AXC94921.1\|1702141_1702873_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXC94922.1\|1703095_1704781_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXC94923.1\|1704777_1705497_+	DNA-binding response regulator	NA	NA	NA	NA
AXC94924.1\|1705543_1706011_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXC94925.1\|1706067_1706598_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXC94926.1\|1706769_1707228_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
AXC94927.1\|1707468_1709502_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	27.6

DBSCAN-SWA_4

1776694 : 1787201

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC94982.1\|1776694_1778098_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	26.5
AXC94983.1\|1778275_1779169_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXC94984.1\|1779545_1780631_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXC94985.1\|1780630_1781530_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.7e-30	36.0
AXC97717.1\|1781577_1782456_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
AXC94986.1\|1782456_1783008_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AXC94987.1\|1783013_1783988_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXC94988.1\|1784003_1784777_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXC94989.1\|1784781_1785861_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
AXC94990.1\|1785887_1787201_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1869743 : 1876979

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC95072.1\|1869743_1870163_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXC95073.1\|1870165_1871434_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.4e-227	92.4
AXC95074.1\|1871888_1872101_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXC97721.1\|1872111_1872300_+	cold-shock protein	NA	NA	NA	NA
AXC95075.1\|1872560_1873739_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	2.5e-109	57.0
AXC95076.1\|1874388_1874688_+	hypothetical protein	NA	NA	NA	NA
AXC95077.1\|1874779_1875475_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AXC95078.1\|1875548_1876979_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2163027 : 2169684

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC95363.1\|2163027_2163834_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	4.6e-14	27.4
AXC95364.1\|2163835_2164828_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
AXC95365.1\|2164827_2165718_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
AXC95366.1\|2166540_2167263_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	4.3e-35	38.9
AXC95367.1\|2167733_2167916_+	hypothetical protein	S4TSR3	Salmonella_phage	1.0e-22	77.6
AXC95368.1\|2168165_2168306_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	6.5e-09	77.1
AXC95369.1\|2168344_2168644_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	3.2e-13	54.3
AXC95370.1\|2168570_2168996_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
AXC95371.1\|2169369_2169684_+	recombinase family protein	A0A1S6L009	Salmonella_phage	4.3e-40	86.1

DBSCAN-SWA_7

2645418 : 2652656

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC95835.1\|2645418_2645658_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AXC97753.1\|2646537_2647347_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AXC95836.1\|2647419_2647797_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AXC95837.1\|2647944_2648487_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AXC95838.1\|2648670_2649399_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.2e-61	52.5
AXC95839.1\|2649415_2649829_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7
AXC95840.1\|2650873_2651998_-	DUF3626 domain-containing protein	NA	NA	NA	NA
AXC95841.1\|2652443_2652656_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7

DBSCAN-SWA_8

2657934 : 2705752

Enterobacteria_phage(38.1%)

capsid,tRNA,portal,head,terminase,integrase,transposase,tail,lysis

attL 2652392:2652407|attR 2701653:2701668

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2652392:2652407	attL	NA	NA	NA	NA
AXC95845.1\|2657934_2658051_+\|tail	phage tail protein	NA	NA	NA	NA
AXC95846.1\|2658241_2658442_+	phage virulence factor	NA	NA	NA	NA
AXC95847.1\|2658539_2659124_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-87	84.8
AXC95848.1\|2659123_2661565_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	7.3e-87	62.0
AXC95849.1\|2661618_2661861_-	hypothetical protein	NA	NA	NA	NA
AXC95850.1\|2661899_2665262_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.9
AXC95851.1\|2665323_2665971_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
AXC95852.1\|2665868_2666606_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
AXC95853.1\|2666612_2667311_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	7.9e-103	75.4
AXC95854.1\|2667320_2667650_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
AXC95855.1\|2667652_2670748_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.3e-277	61.6
AXC95856.1\|2670719_2671058_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AXC95857.1\|2671054_2671450_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AXC95858.1\|2671500_2672247_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AXC95859.1\|2672254_2672656_-\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AXC95860.1\|2672764_2673895_+\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	1.9e-215	99.2
AXC95861.1\|2673943_2674522_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.7e-82	80.7
AXC95862.1\|2674549_2674933_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
AXC95863.1\|2674943_2675309_-	DNA packaging protein	NA	NA	NA	NA
AXC95864.1\|2675366_2676395_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AXC95865.1\|2676449_2676797_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AXC95866.1\|2676809_2678306_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.3e-98	52.7
AXC95867.1\|2678295_2679876_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
AXC95868.1\|2679872_2680076_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	9.5e-17	72.3
AXC95869.1\|2680059_2681991_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.8e-258	65.7
AXC95870.1\|2681962_2682508_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AXC95871.1\|2682552_2682759_-	hypothetical protein	NA	NA	NA	NA
AXC95872.1\|2682793_2683195_+	inhibitor of g-type lysozyme	NA	NA	NA	NA
AXC95873.1\|2683421_2683886_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.8e-58	84.7
AXC95874.1\|2683986_2684526_-	lysozyme	S5MQK2	Escherichia_phage	4.4e-77	74.1
AXC97754.1\|2684503_2684806_-	alpha/beta hydrolase	NA	NA	NA	NA
AXC97755.1\|2685055_2685511_+	DUF2441 domain-containing protein	NA	NA	NA	NA
AXC95875.1\|2685522_2685741_-	hypothetical protein	NA	NA	NA	NA
AXC95876.1\|2685894_2686083_-	hypothetical protein	NA	NA	NA	NA
AXC95877.1\|2686217_2686406_+	hypothetical protein	NA	NA	NA	NA
AXC95878.1\|2686325_2686883_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	9.5e-51	78.5
AXC95879.1\|2686932_2687157_-	hypothetical protein	NA	NA	NA	NA
AXC95880.1\|2687153_2687708_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.4e-64	65.3
AXC95881.1\|2687704_2688001_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	3.9e-35	79.1
AXC95882.1\|2687982_2688177_-	hypothetical protein	S4TNP0	Salmonella_phage	1.4e-12	61.5
AXC95883.1\|2688173_2688773_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	3.3e-97	82.9
AXC95884.1\|2688836_2689085_-	hypothetical protein	NA	NA	NA	NA
AXC95885.1\|2689618_2690125_-	hypothetical protein	NA	NA	NA	NA
AXC95886.1\|2690427_2690805_-	DUF977 family protein	A0A088CBK9	Shigella_phage	2.2e-14	36.1
AXC95887.1\|2690822_2691575_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	8.5e-103	76.1
AXC95888.1\|2691581_2692451_-	DNA-binding protein	A0A088CD36	Shigella_phage	6.9e-32	58.5
AXC95889.1\|2692495_2692990_-	hypothetical protein	NA	NA	NA	NA
AXC95890.1\|2692976_2693231_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
AXC95891.1\|2693327_2693753_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	9.3e-14	56.3
AXC95892.1\|2694063_2694219_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	4.7e-08	55.3
AXC95893.1\|2694597_2694882_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
AXC95894.1\|2694956_2695292_+	hypothetical protein	NA	NA	NA	NA
AXC95895.1\|2695432_2698123_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	6.8e-118	83.5
AXC95896.1\|2698980_2699301_+	hypothetical protein	A0A222YY67	Escherichia_phage	1.8e-33	59.2
AXC95897.1\|2699293_2699626_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
AXC95898.1\|2699622_2700174_+	Eaa protein	A0A192Y7X3	Salmonella_phage	2.8e-10	34.5
AXC95899.1\|2700223_2700460_+	excisionase	NA	NA	NA	NA
AXC95900.1\|2700449_2701592_+\|integrase	integrase	O21929	Phage_21	1.8e-173	80.0
AXC95901.1\|2701705_2702956_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
2701653:2701668	attR	NA	NA	NA	NA
AXC95902.1\|2703127_2703793_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AXC95903.1\|2703789_2704119_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AXC95904.1\|2704130_2704592_+	NUDIX hydrolase	NA	NA	NA	NA
AXC95905.1\|2704645_2705752_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_9

4432746 : 4467472

Cronobacter_phage(63.33%)

capsid,holin,head,terminase,portal,integrase,tail

attL 4432038:4432082|attR 4462847:4462891

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4432038:4432082	attL	NA	NA	NA	NA
AXC97433.1\|4432746_4434471_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.3e-175	63.0
AXC97434.1\|4434478_4435021_-	hypothetical protein	F1BUJ9	Cronobacter_phage	7.1e-43	56.0
AXC97435.1\|4434992_4435715_-	hypothetical protein	F1BUK1	Cronobacter_phage	1.2e-40	40.3
AXC97436.1\|4435704_4436292_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.0e-58	55.5
AXC97437.1\|4436291_4438238_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.7e-123	68.1
AXC97438.1\|4438249_4438843_-	hypothetical protein	F1BUK5	Cronobacter_phage	4.7e-72	63.8
AXC97439.1\|4438835_4440020_-	hypothetical protein	F1BUK6	Cronobacter_phage	1.2e-154	69.2
AXC97440.1\|4440012_4440348_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	1.2e-29	58.7
AXC97441.1\|4440344_4442459_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.6e-141	41.3
AXC97442.1\|4442460_4442640_-	hypothetical protein	A5X9I8	Aeromonas_virus	6.4e-09	63.0
AXC97443.1\|4442648_4442918_-	hypothetical protein	NA	NA	NA	NA
AXC97444.1\|4442914_4443112_-	hypothetical protein	NA	NA	NA	NA
AXC97445.1\|4443020_4443404_-	hypothetical protein	F1BUL2	Cronobacter_phage	1.2e-12	38.5
AXC97446.1\|4443403_4443742_-	M15 family peptidase	F1BUL3	Cronobacter_phage	8.9e-44	84.2
AXC97447.1\|4443728_4444040_-\|holin	holin	NA	NA	NA	NA
AXC97448.1\|4444044_4444500_-	DUF2597 family protein	A5X9I1	Aeromonas_virus	1.5e-38	52.3
AXC97449.1\|4444503_4445646_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	5.6e-130	61.3
AXC97450.1\|4445648_4446344_-	hypothetical protein	F1BUL6	Cronobacter_phage	6.7e-70	58.4
AXC97451.1\|4446340_4446817_-\|tail	phage tail protein	NA	NA	NA	NA
AXC97452.1\|4446813_4447287_-\|head	head completion protein	F1BUL8	Cronobacter_phage	1.2e-30	54.3
AXC97453.1\|4447389_4448091_-\|terminase	terminase	F1BUM0	Cronobacter_phage	2.0e-69	57.1
AXC97454.1\|4448093_4449116_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	6.6e-98	55.7
AXC97455.1\|4449144_4450206_-\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.2e-32	44.3
AXC97456.1\|4450382_4452194_+	hypothetical protein	F1BUM5	Cronobacter_phage	7.4e-185	54.4
AXC97457.1\|4452190_4453252_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	5.2e-122	60.5
AXC97458.1\|4453299_4453575_+	transcriptional regulator	F1BUM8	Cronobacter_phage	3.1e-26	60.7
AXC97459.1\|4453627_4455463_+	hypothetical protein	NA	NA	NA	NA
AXC97460.1\|4455554_4458191_-	replication endonuclease	E5G6L9	Salmonella_phage	3.5e-127	37.9
AXC97461.1\|4459280_4459670_-	hypothetical protein	NA	NA	NA	NA
AXC97462.1\|4459685_4459907_-	hypothetical protein	A0A0M4S6M9	Salmonella_phage	2.2e-11	50.0
AXC97463.1\|4460044_4460320_+	hypothetical protein	NA	NA	NA	NA
AXC97464.1\|4460294_4460915_-	hypothetical protein	NA	NA	NA	NA
AXC97465.1\|4460915_4461188_-	hypothetical protein	Q1JS20	Enterobacteria_phage	1.3e-40	85.6
AXC97466.1\|4461382_4461676_+	XRE family transcriptional regulator	Q1JS21	Enterobacteria_phage	2.0e-36	77.3
AXC97467.1\|4461745_4462726_+\|integrase	integrase	Q7Y4C5	Escherichia_virus	1.2e-160	85.0
AXC97468.1\|4462915_4463416_-	stress adaptor protein CpxP	NA	NA	NA	NA
4462847:4462891	attR	NA	NA	NA	NA
AXC97469.1\|4463566_4464265_+	DNA-binding transcriptional regulator CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
AXC97470.1\|4464261_4465635_+	two-component system sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
AXC97471.1\|4465685_4466081_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
AXC97472.1\|4466092_4466845_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
AXC97473.1\|4466851_4467472_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr_ID: CP030002.1|AXC95888.1|2691581_2692451_-|DNA-binding-protein

Click the colored protein region to show detailed information

Acr_ID: CP030002.1|AXC95889.1|2692495_2692990_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP030002.1|AXC95888.1|2691581_2692451_-|DNA-binding-protein

2691581_2692451_-

289 aa aa

2657934-2705752

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP030002_2	Unclear	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	2661279-2661248	0

1. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to CP030002 position: 2661279-2661248, mismatch: 0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

CP030002.1|AXC95889.1|2692495_2692990_-|hypothetical-protein

2692495_2692990_-

164 aa aa

2657934-2705752

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP030002_2	Unclear	2.1\|959374\|32\|CP030002\|PILER-CR,CRISPRCasFinder	959374-959405	32	2661279-2661248	0

1. spacer 2.1|959374|32|CP030002|PILER-CR,CRISPRCasFinder matches to CP030002 position: 2661279-2661248, mismatch: 0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

2. CP030003

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

53111 : 103262

Escherichia_phage(18.18%)

transposase,integrase

attL 75099:75114|attR 105417:105432

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC97894.1\|53111_54287_+\|transposase	transposase	A0A077SLN2	Escherichia_phage	7.1e-173	81.6
AXC97895.1\|54343_54814_+	DUF1472 domain-containing protein	NA	NA	NA	NA
AXC97896.1\|54734_55235_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	1.9e-05	27.1
AXC97897.1\|55374_55674_-	hypothetical protein	NA	NA	NA	NA
AXC97898.1\|55695_55941_+	hypothetical protein	NA	NA	NA	NA
AXC97899.1\|55963_56398_+	post-segregation killing protein PndC	NA	NA	NA	NA
AXC97900.1\|56491_56758_+	hypothetical protein	NA	NA	NA	NA
AXC97901.1\|56822_57764_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-61	51.0
AXC97902.1\|57825_58032_+	hypothetical protein	NA	NA	NA	NA
AXC97903.1\|58062_58314_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXC97904.1\|58347_58545_-	hypothetical protein	NA	NA	NA	NA
AXC97905.1\|58553_58769_+	hypothetical protein	NA	NA	NA	NA
AXC97906.1\|58893_59742_+	DUF4942 domain-containing protein	NA	NA	NA	NA
AXC97907.1\|59827_60163_-	molybdopterin-guanine dinucleotide biosynthesis protein MobC	NA	NA	NA	NA
AXC97908.1\|60396_60729_+	nikA protein	NA	NA	NA	NA
AXC97909.1\|60739_63439_+	relaxase NikB	NA	NA	NA	NA
AXC97910.1\|63476_65768_-	conjugal transfer protein TrbC	NA	NA	NA	NA
AXC97911.1\|65760_66831_-	DsbC family protein	NA	NA	NA	NA
AXC97912.1\|66849_68058_-	conjugal transfer protein TrbA	NA	NA	NA	NA
AXC97913.1\|68425_69766_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXC97914.1\|69810_69933_+	plasmid mobilization protein	NA	NA	NA	NA
AXC97915.1\|70202_70535_-	protein flxA	NA	NA	NA	NA
AXC97916.1\|70737_71043_-	hypothetical protein	NA	NA	NA	NA
AXC97917.1\|71067_71307_+	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AXC97918.1\|71306_71594_+	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
AXC97973.1\|71665_71818_+	Hok/Gef family protein	NA	NA	NA	NA
AXC97919.1\|71889_72141_-	hypothetical protein	NA	NA	NA	NA
AXC97920.1\|72720_72933_+	hypothetical protein	NA	NA	NA	NA
AXC97921.1\|73418_73601_-	hypothetical protein	NA	NA	NA	NA
AXC97974.1\|73600_74827_-\|transposase	transposase	O80301	Enterobacteria_phage	7.9e-191	95.1
75099:75114	attL	NA	NA	NA	NA
AXC97922.1\|75468_75678_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
AXC97923.1\|75749_76412_-	ethanolamine utilization protein EutE	NA	NA	NA	NA
AXC97924.1\|76482_78654_-	hypothetical protein	NA	NA	NA	NA
AXC97925.1\|78750_79335_-	conjugal transfer protein TraX	NA	NA	NA	NA
AXC97926.1\|79363_80566_-	conjugal transfer protein	NA	NA	NA	NA
AXC97927.1\|80532_81147_-	conjugal transfer protein TraV	NA	NA	NA	NA
AXC97928.1\|81146_84191_-	ATP-binding protein	NA	NA	NA	NA
AXC97929.1\|84280_85081_-	conjugal transfer protein TraT	NA	NA	NA	NA
AXC97930.1\|85064_85253_-	TraS protein	NA	NA	NA	NA
AXC97931.1\|85316_85721_-	conjugal transfer protein TraR	NA	NA	NA	NA
AXC97932.1\|85771_86299_-	conjugal transfer protein TraQ	NA	NA	NA	NA
AXC97933.1\|86298_87003_-	conjugal transfer protein TraP	NA	NA	NA	NA
AXC97934.1\|87002_88292_-	conjugal transfer protein TraO	NA	NA	NA	NA
AXC97935.1\|88294_89278_-	conjugal transfer protein TraN	NA	NA	NA	NA
AXC97936.1\|89288_89981_-	conjugal transfer protein TraM	NA	NA	NA	NA
AXC97937.1\|89977_90325_-	conjugal transfer protein	NA	NA	NA	NA
AXC97938.1\|90342_94110_-	DNA primase	A0A1B0VML8	Pseudomonas_phage	3.5e-19	29.7
AXC97975.1\|94199_94667_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.2e-19	30.8
AXC97939.1\|94785_96013_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.0e-174	97.3
AXC97940.1\|96100_96391_-	conjugal transfer protein	NA	NA	NA	NA
AXC97941.1\|96387_97536_-	plasmid transfer ATPase TraJ	NA	NA	NA	NA
AXC97942.1\|97532_98351_-	conjugal transfer protein	NA	NA	NA	NA
AXC97943.1\|98347_98806_-	hypothetical protein	NA	NA	NA	NA
AXC97944.1\|99200_99785_-	histidine phosphatase family protein	A0A2L1IV13	Escherichia_phage	7.7e-11	39.8
AXC97945.1\|99844_101047_-	type IX secretion system membrane protein PorP/SprF	NA	NA	NA	NA
AXC97946.1\|101132_101957_-	conjugal transfer protein TraE	NA	NA	NA	NA
AXC97947.1\|102107_103262_-\|integrase	site-specific integrase	B5WZU7	Pseudomonas_phage	1.0e-46	43.0
105417:105432	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

2. CP030003

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection