CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030005	Salmonella enterica subsp. enterica strain SA20141895 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	0	6	6	0
CP030006	Salmonella enterica subsp. enterica strain SA20141895 plasmid pSA20141895.1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030005_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030005_1

943795-944250

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

cas3,cas8e

The CRISPR arrays of CP030005_1

>merge|CP030005|1|943795-944250|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATACCCCGGTTACTACGCTGGCCCAGCCAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGTCGGGTTGCGGTCGCCTTTGGTACTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGACCTCAATAAAAATTTACACCGCCACACCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCATTTTTGATCATCTCCTCCAGCCTGCTGAGGTGTTCCCCACGCTAGCGGGGATAAACCGCACTGGAGATATAGCTGCTGTCGTCATCGGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGTCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP030005|1|1|943795-944189|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACCCCGGTTACTACGCTGGCCCAGCCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGTCGGGTTGCGGTCGCCTTTGGTACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTCAATAAAAATTTACACCGCCACACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCACGCTAGCGGGGATAAACCG	CACTGGAGATATAGCTGCTGTCGTCATCGGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP030005|1|1|943795-944250|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACCCCGGTTACTACGCTGGCCCAGCCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGTCGGGTTGCGGTCGCCTTTGGTACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTCAATAAAAATTTACACCGCCACACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCACGCTAGCGGGGATAAACCG	CACTGGAGATATAGCTGCTGTCGTCATCGGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP030005|1|1|943795-944250|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACCCCGGTTACTACGCTGGCCCAGCCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGTCGGGTTGCGGTCGCCTTTGGTACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTCAATAAAAATTTACACCGCCACACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCACGCTAGCGGGGATAAACCG	CACTGGAGATATAGCTGCTGTCGTCATCGGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP030005.1\|AXC98840.1\|933885_934659_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP030005.1\|AXC98848.1\|945235_945598_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030005.1\|AXC98843.1\|938644_939445_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP030005.1\|AXC98844.1\|939672_941310_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP030005.1\|AXC98850.1\|947820_949533_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030005.1\|AXC98846.1\|942826_943498_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030005.1\|AXC98849.1\|946021_947821_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030005.1\|AXC98845.1\|941392_942691_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030005.1\|AXC98837.1\|932341_932878_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP030005.1\|AXC98842.1\|937450_938038_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP030005.1\|AXC98841.1\|934671_937371_-\|PapC/FimD-family-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP030005.1\|AXC98855.1\|954627_956184_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030005.1\|AXC98851.1\|949608_950343_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030005.1\|AXC98847.1\|944348_945146_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP030005.1\|AXC98839.1\|933359_933866_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP030005.1\|AXC98838.1\|932874_933345_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP030005.1\|AXC98853.1\|950555_951509_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030005.1\|AXD02348.1\|945526_945697_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP030005.1\|AXC98852.1\|950231_950474_-\|hypothetical-protein	unknown	unknown	unknown
CP030005.1\|AXC98854.1\|951952_954616_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP030005.1\|AXC98840.1\|933885_934659_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP030005.1\|AXC98848.1\|945235_945598_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030005.1\|AXC98843.1\|938644_939445_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
CP030005.1\|AXC98844.1\|939672_941310_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030005.1\|AXC98850.1\|947820_949533_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030005.1\|AXC98846.1\|942826_943498_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP030005.1\|AXC98849.1\|946021_947821_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030005.1\|AXC98845.1\|941392_942691_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030005.1\|AXC98837.1\|932341_932878_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.26302e-121
CP030005.1\|AXC98842.1\|937450_938038_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP030005.1\|AXC98841.1\|934671_937371_-\|PapC/FimD-family-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP030005.1\|AXC98855.1\|954627_956184_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030005.1\|AXC98851.1\|949608_950343_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.65911e-139
CP030005.1\|AXC98847.1\|944348_945146_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	4.90164e-103
CP030005.1\|AXC98839.1\|933359_933866_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP030005.1\|AXC98838.1\|932874_933345_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
CP030005.1\|AXC98853.1\|950555_951509_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030005.1\|AXC98854.1\|951952_954616_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0

>CP030005.1|AXC98846.1|942826_943498_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030005.1|AXC98845.1|941392_942691_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030005.1|AXC98844.1|939672_941310_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030005.1|AXC98843.1|938644_939445_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030005.1|AXC98842.1|937450_938038_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP030005.1|AXC98841.1|934671_937371_-|PapC/FimD-family-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP030005.1|AXC98840.1|933885_934659_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP030005.1|AXC98839.1|933359_933866_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP030005.1|AXC98838.1|932874_933345_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP030005.1|AXC98837.1|932341_932878_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGIEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATEGTAFVLKEGITTINLQARLQKYAGEDVMPGEFKGSATVSFEYQ
>CP030005.1|AXC98847.1|944348_945146_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030005.1|AXC98848.1|945235_945598_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030005.1|AXD02348.1|945526_945697_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP030005.1|AXC98849.1|946021_947821_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIVSEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030005.1|AXC98850.1|947820_949533_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030005.1|AXC98851.1|949608_950343_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030005.1|AXC98852.1|950231_950474_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAAGIIIPRKDNYPSCSPHSRFSPKKRVSSSAIPGSHLRVVCVSPTDR
>CP030005.1|AXC98853.1|950555_951509_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP030005.1|AXC98854.1|951952_954616_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTFSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMLFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP030005.1|AXC98855.1|954627_956184_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE

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Crispr_ID: CP030005_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030005_2

960509-960842

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030005_2

>merge|CP030005|2|960509-960842|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGTATGAATCCGATGCATGAGGGTGAACTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAATTTGCAAGCGTCGCGGAAAATTTCGCAGTGTTCCCCGCGCTAGCGGGGATAAACCGTAAATTGCAAAAGAATTCACGGAGATTACGACGTGTTCCCCGCGCTAGCGGGGATAAACCGGCGGTAATGTTGGCTGTCTGCGTGATAAATGCATGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030005|2|2|960509-960842|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTATGAATCCGATGCATGAGGGTGAACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAATTTGCAAGCGTCGCGGAAAATTTCGCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAAATTGCAAAAGAATTCACGGAGATTACGAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCGGTAATGTTGGCTGTCTGCGTGATAAATGC
ATGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030005.1\|AXC98864.1\|963071_964511_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP030005.1\|AXC98868.1\|965997_966708_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030005.1\|AXC98854.1\|951952_954616_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP030005.1\|AXC98860.1\|959198_960119_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030005.1\|AXC98862.1\|960856_961903_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030005.1\|AXC98865.1\|964497_965103_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030005.1\|AXC98867.1\|965667_965979_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030005.1\|AXC98855.1\|954627_956184_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030005.1\|AXC98869.1\|966707_967187_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030005.1\|AXC98856.1\|956180_956741_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP030005.1\|AXC98863.1\|962153_963062_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030005.1\|AXC98866.1\|965120_965477_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030005.1\|AXC98870.1\|967183_968233_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP030005.1\|AXC98859.1\|958551_959202_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP030005.1\|AXC98858.1\|957823_958570_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP030005.1\|AXC98853.1\|950555_951509_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030005.1\|AXC98871.1\|968213_968975_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030005.1\|AXC98852.1\|950231_950474_-\|hypothetical-protein	unknown	unknown	unknown
CP030005.1\|AXC98861.1\|960118_960412_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP030005.1\|AXC98857.1\|956754_957813_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
CP030005.1\|AXC98864.1\|963071_964511_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030005.1\|AXC98868.1\|965997_966708_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP030005.1\|AXC98854.1\|951952_954616_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP030005.1\|AXC98860.1\|959198_960119_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.1249e-157
CP030005.1\|AXC98862.1\|960856_961903_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030005.1\|AXC98865.1\|964497_965103_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP030005.1\|AXC98867.1\|965667_965979_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP030005.1\|AXC98855.1\|954627_956184_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030005.1\|AXC98869.1\|966707_967187_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP030005.1\|AXC98856.1\|956180_956741_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
CP030005.1\|AXC98863.1\|962153_963062_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030005.1\|AXC98866.1\|965120_965477_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP030005.1\|AXC98870.1\|967183_968233_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030005.1\|AXC98859.1\|958551_959202_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.72706e-76
CP030005.1\|AXC98858.1\|957823_958570_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.2413e-48
CP030005.1\|AXC98853.1\|950555_951509_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030005.1\|AXC98871.1\|968213_968975_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
CP030005.1\|AXC98861.1\|960118_960412_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.29614e-62
CP030005.1\|AXC98857.1\|956754_957813_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131

>CP030005.1|AXC98861.1|960118_960412_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLSVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP030005.1|AXC98860.1|959198_960119_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTSVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP030005.1|AXC98859.1|958551_959202_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP030005.1|AXC98858.1|957823_958570_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP030005.1|AXC98857.1|956754_957813_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>CP030005.1|AXC98856.1|956180_956741_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP030005.1|AXC98855.1|954627_956184_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP030005.1|AXC98854.1|951952_954616_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTFSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMLFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP030005.1|AXC98853.1|950555_951509_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP030005.1|AXC98852.1|950231_950474_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAAGIIIPRKDNYPSCSPHSRFSPKKRVSSSAIPGSHLRVVCVSPTDR
>CP030005.1|AXC98862.1|960856_961903_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030005.1|AXC98863.1|962153_963062_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030005.1|AXC98864.1|963071_964511_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030005.1|AXC98865.1|964497_965103_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030005.1|AXC98866.1|965120_965477_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030005.1|AXC98867.1|965667_965979_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030005.1|AXC98868.1|965997_966708_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030005.1|AXC98869.1|966707_967187_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030005.1|AXC98870.1|967183_968233_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030005.1|AXC98871.1|968213_968975_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP030005_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030005_3

2979954-2980082

Orphan

Consensus_repeat	Method
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030005_3

>merge|CP030005|3|2979954-2980082|CRISPRCasFinder
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAGAAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCACATATGACCCGAAGGGGCGAGCAAAGCGAGTCAATCCCTCCCTCACCGCCATATTCAAG

>CP030005|3|3|2979954-2980082|CRISPRCasFinder
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	AAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCACATATGACCCGAAGGGGCGAGCAA
AGCGAGTCAATCCCTCCCTCACCGCCATATTCAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP030005.1\|AXD00798.1\|2990876_2992529_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP030005.1\|AXD00786.1\|2977996_2978857_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
CP030005.1\|AXD00797.1\|2989833_2990733_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
CP030005.1\|AXD00793.1\|2983820_2985767_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
CP030005.1\|AXD00791.1\|2983469_2983691_+\|cold-shock-domain-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP030005.1\|AXD00792.1\|2983645_2983840_-\|hypothetical-protein	unknown	unknown	unknown
CP030005.1\|AXD00785.1\|2976976_2977888_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184959
CP030005.1\|AXD00789.1\|2980518_2982795_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP030005.1\|AXD00794.1\|2985763_2986882_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
CP030005.1\|AXD00795.1\|2987009_2987978_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
CP030005.1\|AXD00778.1\|2970419_2970695_+\|hypothetical-protein	unknown	unknown	unknown
CP030005.1\|AXD00796.1\|2987974_2989633_-\|DUF2813-domain-containing-protein	unknown	unknown	gnl\|CDD\|226121
CP030005.1\|AXD00790.1\|2982825_2983146_-\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|178809
CP030005.1\|AXD00787.1\|2978876_2979554_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494
CP030005.1\|AXD00783.1\|2976356_2976740_+\|hypothetical-protein	unknown	unknown	unknown
CP030005.1\|AXD00784.1\|2976667_2976886_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP030005.1\|AXD00782.1\|2975651_2976356_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP030005.1\|AXD00779.1\|2971036_2972005_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP030005.1\|AXD00781.1\|2973885_2975607_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP030005.1\|AXD00780.1\|2972118_2973885_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|236870

Protein	Function_ID	Function_description	E-value
CP030005.1\|AXD00798.1\|2990876_2992529_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP030005.1\|AXD00786.1\|2977996_2978857_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	3.44651e-104
CP030005.1\|AXD00797.1\|2989833_2990733_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.29901e-118
CP030005.1\|AXD00779.1\|2971036_2972005_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP030005.1\|AXD00793.1\|2983820_2985767_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP030005.1\|AXD00785.1\|2976976_2977888_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	0
CP030005.1\|AXD00789.1\|2980518_2982795_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP030005.1\|AXD00794.1\|2985763_2986882_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP030005.1\|AXD00795.1\|2987009_2987978_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	7.14549e-129
CP030005.1\|AXD00796.1\|2987974_2989633_-\|DUF2813-domain-containing-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP030005.1\|AXD00780.1\|2972118_2973885_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP030005.1\|AXD00787.1\|2978876_2979554_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	4.00795e-61
CP030005.1\|AXD00784.1\|2976667_2976886_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
CP030005.1\|AXD00782.1\|2975651_2976356_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.02896e-141
CP030005.1\|AXD00791.1\|2983469_2983691_+\|cold-shock-domain-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	5.83011e-48
CP030005.1\|AXD00781.1\|2973885_2975607_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP030005.1\|AXD00790.1\|2982825_2983146_-\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.53033e-48

>CP030005.1|AXD00787.1|2978876_2979554_+|hydrolase
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDFVNAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARIVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR
>CP030005.1|AXD00786.1|2977996_2978857_+|pirin-family-protein
MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAQQLSPFLLLDYAGPHTFTPGNEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMTAGAGILHEEFHSDAFTRRGGELEMVQLWVNLPMKDKMTTPGYQSITHDVIPTVTLPDDAGVVRVIAGRYEETKGPAHTFSPLNVWDMRLQRNRQLTLTQPEGWSTALVVLKGNITVNGTTPVNEAQLVVLSQQGKTLHLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVRDFNSGRFGQI
>CP030005.1|AXD00785.1|2976976_2977888_-|LysR-family-transcriptional-regulator
MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLVQLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEEYARMVEE
>CP030005.1|AXD00784.1|2976667_2976886_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP030005.1|AXD00783.1|2976356_2976740_+|hypothetical-protein
MFSAHFLLGCYNCCRRIGLAHYPAARCQVTPIVYFTVPLYVALMSIHQAVVSGKKCITRRCRVSRNHVLNLVCCVLNAQIFTYQKKFGIILPVQIMVVIPQRIRWPKKTILKCKVPFSKRYLIPCSA
>CP030005.1|AXD00782.1|2975651_2976356_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQHGIFPWFSPGDPILWWSPDPRAVLWPEKFHLSRSMKRFHNASPYRVTLNYAFDRVIDGCANHRDEGTWITRGIEEAYRRLHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFSRQENASKTALLVFCAEFIRHGGKLIDCQVLNNHTASLGAIEIPRRDYLDHLAALRQQPLASRFWVPRTLFLPRK
>CP030005.1|AXD00781.1|2973885_2975607_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLSASAIAGFAGIYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYQQGELLNRIVADVDTLDHLYLRVISPLVGAFVVIMIVTLGLSVLDVTLAITLGGIMLLTLFIMPPVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGASKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGGNTQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAPEKVTLTLRDVSFRYPDQPINALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDLPLSSLSESALRRTISVVPQRVHLFSATLRDNLLLAAPNASDEALSDMLRRVGLENLLEDSGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESEMLELLADVMREKTILMVTHRLRGLARFDQIIVMDDGRIIERGTHAELLAGQGRYYQFKQRL
>CP030005.1|AXD00780.1|2972118_2973885_+|thiol-reductant-ABC-exporter-subunit-CydD
MNKTRQKELTRWLKQQSVISQRWLNISRLLGFMSGVLIVAQAWIMARILQHMIMENIPREALLLPFILLILVFVLRAWVVWLRERVGFHAGQHIRFEIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFPSNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAETESIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELNFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAHPARGEVELAENEPVTIDAVNLIITSPEGKTLAGPLNFSLAAGERAVLVGRSGSGKSSLLNVLSGFLSYQGSLRINGVELRDLSPESWRQHLSWVGQNPQLPAATLRENVLLARPDASEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLLLDEPAASLDAHSEQRVMQALKAASKRQTTLMVTHQLEDLADWDAIWVMQDGAIVEQGSYAELSAANGAFATLLAHRQEDI
>CP030005.1|AXD00779.1|2971036_2972005_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDHINNVDLQNRPFRLTGDSAEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGLRLRDTQQSDNIETLDIAGLFVAIGHSPNTALFEGQLELENGYIKVQSGTHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADASK
>CP030005.1|AXD00778.1|2970419_2970695_+|hypothetical-protein
MQFIKNVTIDTVEIFARALLAIYHYYCLSVFLPYSCLTLLTSLFRVAAHHDRPKPRGINGAQCLVYGEKTVASRQLSTSRMASVHAMRRFH
>CP030005.1|AXD00789.1|2980518_2982795_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGDEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYGFQSAQKHKPEAAH
>CP030005.1|AXD00790.1|2982825_2983146_-|ATP-dependent-Clp-protease-adaptor-ClpS
MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP030005.1|AXD00791.1|2983469_2983691_+|cold-shock-domain-protein-CspD
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPIEAEAVA
>CP030005.1|AXD00792.1|2983645_2983840_-|hypothetical-protein
MRWQGSNLADVICRPDKMQQCRHQALALNKNASRSGWHFASWMYTMRQRSYATASASMGTMTLA
>CP030005.1|AXD00793.1|2983820_2985767_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELRNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLTAAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHDGKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYDDLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNAVQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLVGNMPVIVIGVAEEKPSMYGNSNLLQVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP030005.1|AXD00794.1|2985763_2986882_-|macrolide-transporter-subunit-MacA
MRAKGKKFKKRYLVIILILLVGGMAGWRMINAPLPTYQTLIVRPGDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFYYARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEKREREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP
>CP030005.1|AXD00795.1|2987009_2987978_+|DUF535-domain-containing-protein
MSRITIMTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKASFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIKRDFALDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEGESTIVVRDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPKRIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIKGNYYALPLAIARKSEAEIASKKRAEYRRRYALLDSVVEQVPATFKR
>CP030005.1|AXD00796.1|2987974_2989633_-|DUF2813-domain-containing-protein
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLLVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD
>CP030005.1|AXD00797.1|2989833_2990733_+|lysine-exporter-LysO-family-protein
MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFMGISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRIAMALESLQLCGVVVLGFVIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQIVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTAMAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFILSLLVPLLMAFFSA
>CP030005.1|AXD00798.1|2990876_2992529_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLSVDANAHCDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIITGPTAPGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030005_1	1.1\|943824\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943824-943855	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	31858-31889	0	1.0
CP030005_1	1.1\|943824\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943824-943855	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	5926-5957	0	1.0
CP030005_1	1.1\|943824\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943824-943855	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	43224-43255	0	1.0
CP030005_1	1.2\|943885\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943885-943916	32	NZ_CP032182	Citrobacter freundii strain AR_0116 plasmid unnamed4, complete sequence	35640-35671	0	1.0
CP030005_1	1.2\|943885\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943885-943916	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	62220-62251	0	1.0
CP030005_1	1.2\|943885\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943885-943916	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	90941-90972	0	1.0
CP030005_1	1.2\|943885\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943885-943916	32	NC_010391	Salmonella phage Fels-1, complete genome	33421-33452	0	1.0
CP030005_2	2.5\|960782\|32\|CP030005\|CRISPRCasFinder	960782-960813	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
CP030005_1	1.1\|943824\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	943824-943855	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	109903-109934	1	0.969
CP030005_2	2.5\|960782\|32\|CP030005\|CRISPRCasFinder	960782-960813	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
CP030005_2	2.5\|960782\|32\|CP030005\|CRISPRCasFinder	960782-960813	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
CP030005_2	2.5\|960782\|32\|CP030005\|CRISPRCasFinder	960782-960813	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
CP030005_2	2.5\|960782\|32\|CP030005\|CRISPRCasFinder	960782-960813	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
CP030005_1	1.6\|944129\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944129-944160	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
CP030005_1	1.6\|944129\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944129-944160	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
CP030005_1	1.6\|944129\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944129-944160	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
CP030005_1	1.6\|944129\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944129-944160	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
CP030005_1	1.4\|944007\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944007-944038	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	85616-85647	7	0.781
CP030005_1	1.6\|944129\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944129-944160	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
CP030005_1	1.6\|944129\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944129-944160	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
CP030005_2	2.3\|960660\|32\|CP030005\|CRISPRCasFinder	960660-960691	32	NZ_CP034472	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence	145262-145293	7	0.781
CP030005_2	2.3\|960660\|32\|CP030005\|CRISPRCasFinder	960660-960691	32	NZ_CP034477	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence	35769-35800	7	0.781
CP030005_2	2.5\|960782\|32\|CP030005\|CRISPRCasFinder	960782-960813	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
CP030005_1	1.4\|944007\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944007-944038	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	234396-234427	8	0.75
CP030005_1	1.6\|944129\|32\|CP030005\|PILER-CR,CRISPRCasFinder,CRT	944129-944160	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
CP030005_2	2.3\|960660\|32\|CP030005\|CRISPRCasFinder	960660-960691	32	MN694679	Marine virus AFVG_250M876, complete genome	33209-33240	9	0.719

1. spacer 1.1|943824|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

aataccccggttactacgctggcccagccagc	CRISPR spacer
aataccccggttactacgctggcccagccagc	Protospacer
********************************

2. spacer 1.1|943824|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aataccccggttactacgctggcccagccagc	CRISPR spacer
aataccccggttactacgctggcccagccagc	Protospacer
********************************

3. spacer 1.1|943824|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aataccccggttactacgctggcccagccagc	CRISPR spacer
aataccccggttactacgctggcccagccagc	Protospacer
********************************

4. spacer 1.2|943885|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032182 (Citrobacter freundii strain AR_0116 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ctggtcgggttgcggtcgcctttggtactggt	CRISPR spacer
ctggtcgggttgcggtcgcctttggtactggt	Protospacer
********************************

5. spacer 1.2|943885|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctggtcgggttgcggtcgcctttggtactggt	CRISPR spacer
ctggtcgggttgcggtcgcctttggtactggt	Protospacer
********************************

6. spacer 1.2|943885|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctggtcgggttgcggtcgcctttggtactggt	CRISPR spacer
ctggtcgggttgcggtcgcctttggtactggt	Protospacer
********************************

7. spacer 1.2|943885|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NC_010391 (Salmonella phage Fels-1, complete genome) position: , mismatch: 0, identity: 1.0

ctggtcgggttgcggtcgcctttggtactggt	CRISPR spacer
ctggtcgggttgcggtcgcctttggtactggt	Protospacer
********************************

8. spacer 2.5|960782|32|CP030005|CRISPRCasFinder matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

9. spacer 1.1|943824|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

-aataccccggttactacgctggcccagccagc	CRISPR spacer
gaata-cccggttactacgctggcccagccagc	Protospacer
 **** ***************************

10. spacer 2.5|960782|32|CP030005|CRISPRCasFinder matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

11. spacer 2.5|960782|32|CP030005|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

12. spacer 2.5|960782|32|CP030005|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

13. spacer 2.5|960782|32|CP030005|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

14. spacer 1.6|944129|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

15. spacer 1.6|944129|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

16. spacer 1.6|944129|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

17. spacer 1.6|944129|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

18. spacer 1.4|944007|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.781

tcatttttgatcatctcctccagcctgctgag	CRISPR spacer
taatttttgttcatctcttccagccttatcat	Protospacer
* ******* *******.********  * *

19. spacer 1.6|944129|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

20. spacer 1.6|944129|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

21. spacer 2.3|960660|32|CP030005|CRISPRCasFinder matches to NZ_CP034472 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence) position: , mismatch: 7, identity: 0.781

taaattgcaaaagaattcacggagattacgac--	CRISPR spacer
gaaattgcaaaaaaattcacagaga--aaaactg	Protospacer
 ***********.*******.****  * .**

22. spacer 2.3|960660|32|CP030005|CRISPRCasFinder matches to NZ_CP034477 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence) position: , mismatch: 7, identity: 0.781

taaattgcaaaagaattcacggagattacgac--	CRISPR spacer
gaaattgcaaaaaaattcacagaga--aaaactg	Protospacer
 ***********.*******.****  * .**

23. spacer 2.5|960782|32|CP030005|CRISPRCasFinder matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

24. spacer 1.4|944007|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

----tcatttttgatcatctcctccagcctgctgag	CRISPR spacer
ggtaaca----cgatcgtctcttccagcctgctgag	Protospacer
     **    .****.****.**************

25. spacer 1.6|944129|32|CP030005|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

26. spacer 2.3|960660|32|CP030005|CRISPRCasFinder matches to MN694679 (Marine virus AFVG_250M876, complete genome) position: , mismatch: 9, identity: 0.719

taaattgcaaaagaattcacggagattacgac	CRISPR spacer
gccgctgcaaaagaagtcgcggagattataac	Protospacer
   ..********** **.*********..**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1122260 : 1188163

Salmonella_phage(88.1%)

tRNA,capsid,tail,lysis,head,portal,transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC99026.1\|1122260_1123371_+\|transposase	IS3-like element IS1351 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.6e-07	25.6
AXC99027.1\|1124167_1124971_-	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	1.2e-62	44.7
AXC99028.1\|1125369_1125963_-	hypothetical protein	NA	NA	NA	NA
AXC99029.1\|1127251_1127884_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.5e-63	56.7
AXC99030.1\|1128003_1128252_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	8.9e-25	70.7
AXC99031.1\|1128284_1128794_+	hypothetical protein	A0A1S6L008	Salmonella_phage	3.5e-84	93.5
AXC99032.1\|1128801_1129035_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AXC99033.1\|1128982_1129441_-	hypothetical protein	NA	NA	NA	NA
AXC99034.1\|1129660_1130002_+	hypothetical protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
AXC99035.1\|1130069_1130303_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
AXC99036.1\|1130302_1130530_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
AXC99037.1\|1130526_1131384_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.7e-129	80.4
AXC99038.1\|1131374_1133792_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.9
AXC99039.1\|1133946_1134135_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
AXC99040.1\|1134146_1134380_+	DinI family protein	A0A1S6L014	Salmonella_phage	2.8e-36	98.7
AXC99041.1\|1134508_1135249_-	DUF4145 domain-containing protein	A0A1S6L018	Salmonella_phage	1.7e-143	99.6
AXC99042.1\|1135694_1136615_+	hypothetical protein	NA	NA	NA	NA
AXC99043.1\|1136607_1137348_+	restriction endonuclease	NA	NA	NA	NA
AXC99044.1\|1137377_1138424_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.9e-193	95.6
AXC99045.1\|1138423_1140190_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.1
AXC99046.1\|1140332_1141166_+\|capsid	capsid protein	E5G6M5	Salmonella_phage	2.7e-126	87.7
AXC99047.1\|1141182_1142265_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	4.5e-190	97.1
AXC99048.1\|1142268_1142922_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	1.0e-112	98.2
AXC99049.1\|1143015_1143480_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.9e-84	98.1
AXC99050.1\|1143479_1143683_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.2e-33	98.5
AXC99051.1\|1143686_1143902_+	hypothetical protein	E5G6N0	Salmonella_phage	2.9e-32	98.6
AXC99052.1\|1143882_1144392_+	lysozyme	A0A1S6KZY9	Salmonella_phage	6.4e-94	98.8
AXC99053.1\|1144396_1144771_+	hypothetical protein	NA	NA	NA	NA
AXC99054.1\|1144767_1145196_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.6e-64	95.0
AXC99055.1\|1145291_1145723_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	6.2e-74	96.5
AXC99056.1\|1145715_1146162_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-63	87.0
AXC99057.1\|1146230_1146809_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.5e-107	99.0
AXC99058.1\|1146805_1147165_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	6.8e-58	95.8
AXC99059.1\|1147151_1148060_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.4e-160	100.0
AXC99060.1\|1148052_1148658_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.4e-116	98.5
AXC99061.1\|1148654_1150274_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	2.1e-154	90.9
AXC99062.1\|1150280_1150688_+\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
AXC99063.1\|1150884_1151607_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AXC99064.1\|1152140_1153313_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	2.9e-222	99.2
AXC99065.1\|1153322_1153838_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
AXC99066.1\|1153892_1154195_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.5e-45	99.0
AXC99067.1\|1154209_1154329_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
AXC99068.1\|1154321_1157129_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	99.4
AXC99069.1\|1157125_1157611_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	98.5
AXC99070.1\|1157607_1158708_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	6.4e-192	97.5
AXC99071.1\|1158776_1158995_+	levansucrase regulator	Q53ZE7	Salmonella_virus	2.1e-38	100.0
AXD02353.1\|1159546_1160710_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AXC99072.1\|1160717_1162898_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
AXC99073.1\|1162894_1164304_-	type I secretion protein TolC	NA	NA	NA	NA
AXC99074.1\|1164368_1175843_-	biofilm-associated protein BapA	NA	NA	NA	NA
AXD02354.1\|1176457_1176940_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AXC99075.1\|1177089_1177566_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AXC99076.1\|1177555_1177846_+	RnfH family protein	NA	NA	NA	NA
AXC99077.1\|1178011_1178350_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXC99078.1\|1178498_1180160_-	DNA repair protein RecN	NA	NA	NA	NA
AXC99079.1\|1180245_1181124_-	NAD(+) kinase	NA	NA	NA	NA
AXD02355.1\|1181055_1181250_+	molecular chaperone GrpE	NA	NA	NA	NA
AXC99080.1\|1181246_1181837_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXC99081.1\|1181871_1182477_-	cytoplasmic protein	NA	NA	NA	NA
AXC99082.1\|1182597_1183839_-	DUF21 domain-containing protein	NA	NA	NA	NA
AXC99083.1\|1183903_1184695_-	inner membrane protein YpjD	NA	NA	NA	NA
AXC99084.1\|1184640_1184937_-	hypothetical protein	NA	NA	NA	NA
AXC99085.1\|1184860_1186222_+	signal recognition particle protein	NA	NA	NA	NA
AXD02356.1\|1186535_1186784_+	30S ribosomal protein S16	NA	NA	NA	NA
AXC99086.1\|1186802_1187351_+	ribosome maturation factor RimM	NA	NA	NA	NA
AXC99087.1\|1187395_1188163_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1451413 : 1457466

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC99309.1\|1451413_1451581_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.3e-11	63.5
AXC99310.1\|1451596_1451740_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.7e-12	82.9
AXC99311.1\|1452729_1454652_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	1.6e-299	77.2
AXC99312.1\|1454669_1454924_-	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
AXD02364.1\|1454892_1455282_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	1.1e-50	85.6
AXC99313.1\|1456524_1457466_-	hypothetical protein	E7DYY8	Enterobacteria_phage	3.2e-147	87.8

DBSCAN-SWA_3

1694057 : 1703228

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC99535.1\|1694057_1695005_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AXC99536.1\|1694988_1695720_+	ABC transporter permease	NA	NA	NA	NA
AXC99537.1\|1695700_1695808_-	hypothetical protein	NA	NA	NA	NA
AXC99538.1\|1695867_1696599_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXC99539.1\|1696821_1698507_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AXC99540.1\|1698503_1699223_+	DNA-binding response regulator	NA	NA	NA	NA
AXC99541.1\|1699269_1699737_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.1e-74	90.3
AXC99542.1\|1699793_1700324_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXC99543.1\|1700495_1700954_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXC99544.1\|1701194_1703228_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1771504 : 1782011

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXC99599.1\|1771504_1772908_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
AXC99600.1\|1773085_1773979_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXC99601.1\|1774355_1775441_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXC99602.1\|1775440_1776340_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AXC99603.1\|1776387_1777266_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
AXC99604.1\|1777266_1777818_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AXC99605.1\|1777823_1778798_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXC99606.1\|1778813_1779587_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXC99607.1\|1779591_1780671_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
AXC99608.1\|1780697_1782011_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

2627874 : 2633875

Enterobacteria_phage(16.67%)

integrase

attL 2629144:2629158|attR 2639419:2639433

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD00438.1\|2627874_2628366_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	1.3e-43	56.9
AXD00439.1\|2628420_2628609_+	hypothetical protein	NA	NA	NA	NA
AXD00440.1\|2628673_2628841_+	lytic enzyme	NA	NA	NA	NA
AXD00441.1\|2629097_2629631_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	7.1e-11	43.0
2629144:2629158	attL	NA	NA	NA	NA
AXD00442.1\|2629684_2629915_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
AXD00443.1\|2630104_2630599_+	RecE	A0A0U2I1R6	Escherichia_phage	4.8e-22	70.3
AXD02410.1\|2630658_2631513_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.7e-73	50.9
AXD02411.1\|2631709_2631829_-	hypothetical protein	NA	NA	NA	NA
AXD00444.1\|2631886_2632240_-	DUF2511 domain-containing protein	NA	NA	NA	NA
AXD00445.1\|2632256_2633132_-	hypothetical protein	NA	NA	NA	NA
AXD00446.1\|2633132_2633507_-	CopC domain-containing protein YobA	NA	NA	NA	NA
AXD00447.1\|2633644_2633875_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
2639419:2639433	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2833359 : 2909131

Salmonella_phage(80.0%)

tail,protease,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD00646.1\|2833359_2834040_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	2.2e-81	71.0
AXD00647.1\|2834658_2835318_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AXD00648.1\|2835404_2835734_+	sulfurtransferase TusE	NA	NA	NA	NA
AXD00649.1\|2835730_2836012_-	acylphosphatase	NA	NA	NA	NA
AXD00650.1\|2836060_2836840_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXD00651.1\|2836865_2837414_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AXD00652.1\|2837628_2838840_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AXD00653.1\|2838897_2839215_+	heat-shock protein HspQ	NA	NA	NA	NA
AXD00654.1\|2839259_2839676_-	CoA-binding protein	NA	NA	NA	NA
AXD00655.1\|2839846_2840509_+	DUF2057 family protein	NA	NA	NA	NA
AXD00656.1\|2840603_2841062_+	methylglyoxal synthase	NA	NA	NA	NA
AXD00657.1\|2841097_2843152_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AXD00658.1\|2843275_2843722_+	YccF domain-containing protein	NA	NA	NA	NA
AXD00659.1\|2843740_2845894_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AXD00660.1\|2845880_2846486_-	DNA transformation protein	NA	NA	NA	NA
AXD00661.1\|2846702_2847212_+	cell division inhibitor SulA	NA	NA	NA	NA
AXD00662.1\|2847568_2848621_+	outer membrane protein A	NA	NA	NA	NA
AXD00663.1\|2848692_2849145_-	macrodomain Ter protein	NA	NA	NA	NA
AXD00664.1\|2849330_2851091_+\|protease	Lon protease family protein	NA	NA	NA	NA
AXD00665.1\|2851159_2851678_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AXD00666.1\|2851777_2851945_-	ribosome modulation factor	NA	NA	NA	NA
AXD00667.1\|2852200_2852764_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AXD00668.1\|2852760_2854401_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AXD00669.1\|2854405_2855659_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
AXD00670.1\|2855673_2857581_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AXD00671.1\|2857593_2859702_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AXD00672.1\|2859800_2860910_+	MOSC domain-containing protein	NA	NA	NA	NA
AXD00673.1\|2860906_2861449_-	cell division protein ZapC	NA	NA	NA	NA
AXD00674.1\|2861614_2862625_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AXD00675.1\|2862832_2865445_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
AXD00676.1\|2865871_2866063_+	DinI family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
AXD00677.1\|2866333_2867020_+	virulence protein	NA	NA	NA	NA
AXD00678.1\|2867098_2867242_-	hypothetical protein	A0A0M4RTP2	Salmonella_phage	1.2e-10	75.6
AXD00679.1\|2867577_2867790_+	hypothetical protein	A0A192Y5V6	Salmonella_phage	1.6e-27	92.9
AXD00680.1\|2867786_2868188_+	hypothetical protein	A0A192Y6F0	Salmonella_phage	4.7e-60	89.7
AXD00681.1\|2868435_2868669_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.4e-35	97.4
AXD00682.1\|2868943_2869585_+	glutathione S-transferase family protein	NA	NA	NA	NA
AXD02420.1\|2869755_2870274_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	3.5e-47	53.8
AXD00683.1\|2870288_2871950_-\|tail	phage tail protein	A0A192Y7M1	Salmonella_phage	1.9e-147	65.5
AXD00684.1\|2871949_2872630_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.1e-129	98.7
AXD00685.1\|2872626_2873826_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	2.2e-214	97.7
AXD00686.1\|2873826_2874180_-	hypothetical protein	A0A0M4R339	Salmonella_phage	2.1e-59	97.4
AXD00687.1\|2874179_2874932_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	4.0e-92	70.5
AXD00688.1\|2874991_2875372_-	hypothetical protein	NA	NA	NA	NA
AXD00689.1\|2875368_2876142_-	hypothetical protein	NA	NA	NA	NA
AXD00690.1\|2876283_2876631_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	5.2e-23	70.5
AXD00691.1\|2876627_2877701_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	8.2e-184	94.9
AXD00692.1\|2877703_2878006_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	5.7e-50	94.0
AXD00693.1\|2878005_2878581_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	7.0e-89	90.1
AXD00694.1\|2878580_2880590_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	93.9
AXD02421.1\|2880579_2880756_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	4.7e-12	72.9
AXD00695.1\|2880767_2881220_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	4.4e-62	79.3
AXD00696.1\|2881223_2881664_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.5e-54	73.3
AXD00697.1\|2881675_2882821_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	5.0e-163	74.8
AXD00698.1\|2882824_2883388_-	hypothetical protein	A0A0M4R331	Salmonella_phage	8.1e-82	77.0
AXD00699.1\|2883362_2883752_-\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	6.0e-68	97.7
AXD00700.1\|2883738_2884293_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.8e-94	99.5
AXD00701.1\|2884289_2884697_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.8e-73	100.0
AXD00702.1\|2884662_2885031_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
AXD00703.1\|2885072_2886014_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
AXD00704.1\|2886025_2886523_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
AXD00705.1\|2886527_2887760_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.6e-228	99.5
AXD00706.1\|2887774_2888512_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	3.4e-112	100.0
AXD00707.1\|2888399_2889866_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.5e-281	99.4
AXD00708.1\|2889865_2891488_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
AXD00709.1\|2891490_2892120_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	5.4e-111	100.0
AXD00710.1\|2892235_2892556_-	negative regulator GrlR	NA	NA	NA	NA
AXD00711.1\|2892696_2893233_-	DUF2514 family protein	NA	NA	NA	NA
AXD00712.1\|2893229_2893856_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	2.1e-94	80.2
AXD00713.1\|2893858_2894206_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-45	80.4
AXD00714.1\|2894604_2895402_-	antitermination protein	H6WRZ1	Salmonella_phage	1.3e-149	98.1
AXD00715.1\|2895391_2895538_-	YlcG family protein	H6WRZ0	Salmonella_phage	3.6e-18	97.9
AXD00716.1\|2895534_2896176_-	hypothetical protein	S4TSR3	Salmonella_phage	1.1e-114	98.1
AXD00717.1\|2896178_2896385_-	hypothetical protein	S4TNP0	Salmonella_phage	3.9e-34	98.5
AXD00718.1\|2896384_2896987_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AXD00719.1\|2897069_2897291_-	hypothetical protein	NA	NA	NA	NA
AXD00720.1\|2897402_2897636_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AXD02422.1\|2897894_2898086_-	hypothetical protein	G8C7S2	Escherichia_phage	1.1e-17	68.9
AXD00721.1\|2898181_2898481_-	ASCH domain-containing protein	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	1.7e-46	94.6
AXD00722.1\|2898960_2899269_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.4e-48	96.9
AXD00723.1\|2899279_2900029_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	1.2e-138	99.6
AXD00724.1\|2900031_2901015_-	hypothetical protein	H6WRX7	Salmonella_phage	8.9e-161	98.7
AXD00725.1\|2901099_2901420_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
AXD00726.1\|2901454_2901682_-	transcriptional regulator	H6WRX5	Salmonella_phage	1.7e-14	45.9
AXD00727.1\|2901787_2902222_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.5e-14	38.2
AXD00728.1\|2902518_2902677_+	hypothetical protein	H6WRX3	Salmonella_phage	3.4e-22	96.2
AXD00729.1\|2902698_2903049_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.2e-59	94.8
AXD00730.1\|2903175_2906103_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	96.6
AXD00731.1\|2906065_2907223_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AXD00732.1\|2907265_2907505_+	DUF4060 family protein	H6WRW9	Salmonella_phage	9.7e-37	98.7
AXD00733.1\|2907545_2907794_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AXD00734.1\|2907838_2909131_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection