CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030202	Salmonella enterica strain SA20052327 chromosome, complete genome	1 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	0	17	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030202_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030202_1

977985-979415

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
NGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
TGTTCCCCGCGCCAGCGGGGATAAACCGCG	PILER-CR
CACGTGTTCCCCGCGCCAGCGGGGATAAACCGT	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

23 spacers

cas3,cas8e

The CRISPR arrays of CP030202_1

>merge|CP030202|1|977985-979415|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGTGGCAGTCTGGTCAAGTAATACGGTATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCTCCCTGACGCCGCGTTTGTCCCCTGCAGCATGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGTCATGCTTTCGACTAAATACTACCGCGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATAACAACATTATCAGTGTGAAAAGTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAACCATGGCTAAGAAAAAAACTTACAGGACTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTCCGCTTCTGGTAGTGCTTCCAGACCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAGGACAGCCATTCGAGCGCCCAGAGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAGTATGCACTGCTTGATAAAGTCAGGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAGTATGCACTGCTTGATAAAGTCAGGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTAACGTCTATAGCTAAATGTAGAGAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTTTGGAGTCAATGTTATTTCTTCAGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTCAATTTTGTCTTCACCCAGCCATATTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCGCTGGTTGCTCCAACTCCTGATATGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAAATCTTCTTTCATATAACCGTAAGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAGTGCAACGCCGGTGATTTTACCAGTATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCAACAGTTTCTTACCGCAAGCAGTTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCATCGGGATTCATTTTGTTGTCCGGGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCTCTATGTCTAAAAATAAAAGCGGTTCGTGTTCCCTGCGCCAGCGGGGATAAACCCAGCACAATCATTATTAGATGAACTTTCATCAAGTGTTCCCCGCGCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP030202|1|1|977985-979415|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGTGGCAGTCTGGTCAAGTAATACGGTATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC
ATGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAACCATGGCTAAGAAAAAAACTTACAGGACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCAATTTTGTCTTCACCCAGCCATATTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP030202|1|1|977985-979414|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGTGGCAGTCTGGTCAAGTAATACGGTATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC
ATGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAACCATGGCTAAGAAAAAAACTTACAGGACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCAATTTTGTCTTCACCCAGCCATATTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCG
TGTGTTCCCCGCGCCAACAAGGATAGCCG

>CP030202|1|1|977986-978135|PILER-CR
TGTTCCCCGCGCCAGCGGGGATAAACCGCGT	GTGGCAGTCTGGTCAAGTAATACGGTATAGT
GTTCCCCGCGCCAGCGGGGATAAACCGCGCT	CCCTGACGCCGCGTTTGTCCCCTGCAGCAT
GTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGT	CATGCTTTCGACTAAATACTACCGCGAC
AACGTGTTCCCCGCGCCAGCGGGGATAAACCGA	AAATAACAACATTATCAGTGTGAAAAGT
CTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAACCATGGCTAAGAAAAAAACTTACAGGACTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCAATTTTGTCTTCACCCAGCCATATTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA


>CP030202|1|2|978226-978380|PILER-CR
	GTGGCAGTCTGGTCAAGTAATACGGTATAGT
GTTCCCCGCGCCAGCGGGGATAAACCGCGCT	CCCTGACGCCGCGTTTGTCCCCTGCAGCAT
GTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGT	CATGCTTTCGACTAAATACTACCGCGAC
AACGTGTTCCCCGCGCCAGCGGGGATAAACCGA	AAATAACAACATTATCAGTGTGAAAAGT
CTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAACCATGGCTAAGAAAAAAACTTACAGGACTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCAATTTTGTCTTCACCCAGCCATATTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA


>CP030202|1|3|978473-979354|PILER-CR
	GTGGCAGTCTGGTCAAGTAATACGGTATAGT
GTTCCCCGCGCCAGCGGGGATAAACCGCGCT	CCCTGACGCCGCGTTTGTCCCCTGCAGCAT
GTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGT	CATGCTTTCGACTAAATACTACCGCGAC
AACGTGTTCCCCGCGCCAGCGGGGATAAACCGA	AAATAACAACATTATCAGTGTGAAAAGT
CTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAACCATGGCTAAGAAAAAAACTTACAGGACTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCAATTTTGTCTTCACCCAGCCATATTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030202.1\|AXD37179.1\|984770_985505_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030202.1\|AXD37175.1\|979512_980310_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP030202.1\|AXD37165.1\|966531_967068_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP030202.1\|AXD37169.1\|968861_971561_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP030202.1\|AXD37170.1\|971640_972228_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP030202.1\|AXD37177.1\|981183_982983_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030202.1\|AXD37173.1\|975582_976881_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030202.1\|AXD37181.1\|987054_989754_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030202.1\|AXD37172.1\|973862_975500_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP030202.1\|AXD37174.1\|977016_977688_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030202.1\|AXD37171.1\|972834_973635_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP030202.1\|AXD37168.1\|968075_968849_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP030202.1\|AXD40698.1\|985717_986671_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030202.1\|AXD37167.1\|967549_968056_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP030202.1\|AXD37182.1\|990111_991647_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030202.1\|AXD37178.1\|982982_984695_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030202.1\|AXD37180.1\|985393_985636_-\|hypothetical-protein	unknown	unknown	unknown
CP030202.1\|AXD37176.1\|980397_980760_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030202.1\|AXD37166.1\|967064_967535_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP030202.1\|AXD40697.1\|980688_980859_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030202.1\|AXD37179.1\|984770_985505_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.67899e-139
CP030202.1\|AXD37175.1\|979512_980310_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.27039e-101
CP030202.1\|AXD37165.1\|966531_967068_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.26302e-121
CP030202.1\|AXD37169.1\|968861_971561_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP030202.1\|AXD37170.1\|971640_972228_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP030202.1\|AXD37177.1\|981183_982983_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030202.1\|AXD37173.1\|975582_976881_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030202.1\|AXD37181.1\|987054_989754_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	5.16368e-142
CP030202.1\|AXD37172.1\|973862_975500_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030202.1\|AXD37174.1\|977016_977688_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP030202.1\|AXD37171.1\|972834_973635_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP030202.1\|AXD37168.1\|968075_968849_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP030202.1\|AXD40698.1\|985717_986671_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030202.1\|AXD37167.1\|967549_968056_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP030202.1\|AXD37182.1\|990111_991647_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030202.1\|AXD37178.1\|982982_984695_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030202.1\|AXD37176.1\|980397_980760_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030202.1\|AXD37166.1\|967064_967535_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.50214e-100

>CP030202.1|AXD37174.1|977016_977688_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030202.1|AXD37173.1|975582_976881_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030202.1|AXD37172.1|973862_975500_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030202.1|AXD37171.1|972834_973635_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030202.1|AXD37170.1|971640_972228_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP030202.1|AXD37169.1|968861_971561_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKLALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPTTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP030202.1|AXD37168.1|968075_968849_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP030202.1|AXD37167.1|967549_968056_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP030202.1|AXD37166.1|967064_967535_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGASLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP030202.1|AXD37165.1|966531_967068_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGIEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATEGTAFVLKEGITTINLQARLQKYAGEDVMPGEFKGSATVSFEYQ
>CP030202.1|AXD37175.1|979512_980310_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKWIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030202.1|AXD37176.1|980397_980760_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030202.1|AXD40697.1|980688_980859_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILHLVTGN
>CP030202.1|AXD37177.1|981183_982983_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030202.1|AXD37178.1|982982_984695_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030202.1|AXD37179.1|984770_985505_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030202.1|AXD37180.1|985393_985636_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNHPSCSPHSRFSPKNRVSSSAMPGSHLRVVCISPTDR
>CP030202.1|AXD40698.1|985717_986671_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP030202.1|AXD37181.1|987054_989754_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIIWFLTSHDIGKFARGFQKYAEFPDSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRNRFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPQQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALIDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDINGQLRPLVDEIDFCWEKSHLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP030202.1|AXD37182.1|990111_991647_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030202_1	1.24\|979355\|31\|CP030202\|CRT	979355-979385	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90793-90823	4	0.871
CP030202_1	1.24\|979355\|31\|CP030202\|CRT	979355-979385	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112082	4	0.871
CP030202_1	1.24\|979355\|31\|CP030202\|CRT	979355-979385	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225001	4	0.871
CP030202_1	1.23\|979355\|32\|CP030202\|CRISPRCasFinder	979355-979386	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
CP030202_1	1.23\|979355\|32\|CP030202\|CRISPRCasFinder	979355-979386	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
CP030202_1	1.23\|979355\|32\|CP030202\|CRISPRCasFinder	979355-979386	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
CP030202_1	1.24\|979355\|31\|CP030202\|CRT	979355-979385	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271401-271431	5	0.839
CP030202_1	1.17\|978990\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978990-979021	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33598	6	0.806
CP030202_1	1.23\|979355\|32\|CP030202\|CRISPRCasFinder	979355-979386	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
CP030202_1	1.28\|978320\|28\|CP030202\|PILER-CR	978320-978347	28	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1766-1793	6	0.786
CP030202_1	1.4\|978197\|32\|CP030202\|CRISPRCasFinder,CRT	978197-978228	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
CP030202_1	1.15\|978868\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978868-978899	32	MN693798	Marine virus AFVG_250M119, complete genome	22023-22054	7	0.781
CP030202_1	1.19\|979112\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979112-979143	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
CP030202_1	1.19\|979112\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979112-979143	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
CP030202_1	1.19\|979112\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979112-979143	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
CP030202_1	1.19\|979112\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979112-979143	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
CP030202_1	1.19\|979112\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979112-979143	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
CP030202_1	1.23\|979355\|32\|CP030202\|CRISPRCasFinder	979355-979386	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
CP030202_1	1.23\|979355\|32\|CP030202\|CRISPRCasFinder	979355-979386	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
CP030202_1	1.24\|979355\|31\|CP030202\|CRT	979355-979385	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052296-2052326	7	0.774
CP030202_1	1.24\|979355\|31\|CP030202\|CRT	979355-979385	31	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343728-343758	7	0.774
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
CP030202_1	1.7\|978380\|32\|CP030202\|CRISPRCasFinder,CRT	978380-978411	32	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	50068-50099	8	0.75
CP030202_1	1.10\|978563\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978563-978594	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
CP030202_1	1.19\|979112\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979112-979143	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
CP030202_1	1.19\|979112\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979112-979143	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
CP030202_1	1.20\|979173\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979173-979204	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
CP030202_1	1.23\|979355\|32\|CP030202\|CRISPRCasFinder	979355-979386	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
CP030202_1	1.24\|979355\|31\|CP030202\|CRT	979355-979385	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654432	8	0.742
CP030202_1	1.7\|978380\|32\|CP030202\|CRISPRCasFinder,CRT	978380-978411	32	MN693898	Marine virus AFVG_250M937, complete genome	6132-6163	9	0.719
CP030202_1	1.13\|978746\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978746-978777	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
CP030202_1	1.15\|978868\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978868-978899	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	108299-108330	9	0.719
CP030202_1	1.17\|978990\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978990-979021	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
CP030202_1	1.17\|978990\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978990-979021	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
CP030202_1	1.17\|978990\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978990-979021	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72061	9	0.71
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3414-3444	9	0.71
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232723-232753	9	0.71
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129920	9	0.71
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109942-109972	9	0.71
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148698-148728	9	0.71
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3414-3444	9	0.71
CP030202_1	1.6\|978319\|32\|CP030202\|CRISPRCasFinder,CRT	978319-978350	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
CP030202_1	1.11\|978624\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978624-978655	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
CP030202_1	1.11\|978624\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978624-978655	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
CP030202_1	1.12\|978685\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978685-978716	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
CP030202_1	1.12\|978685\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	978685-978716	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
CP030202_1	1.20\|979173\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979173-979204	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
CP030202_1	1.21\|979234\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979234-979265	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
CP030202_1	1.21\|979234\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979234-979265	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
CP030202_1	1.21\|979234\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979234-979265	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
CP030202_1	1.21\|979234\|32\|CP030202\|CRISPRCasFinder,CRT,PILER-CR	979234-979265	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
CP030202_1	1.22\|979295\|31\|CP030202\|CRISPRCasFinder,CRT	979295-979325	31	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78356-78386	10	0.677
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
CP030202_1	1.29\|979295\|32\|CP030202\|PILER-CR	979295-979326	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688

1. spacer 1.24|979355|31|CP030202|CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

2. spacer 1.24|979355|31|CP030202|CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

3. spacer 1.24|979355|31|CP030202|CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

4. spacer 1.23|979355|32|CP030202|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

5. spacer 1.23|979355|32|CP030202|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

6. spacer 1.23|979355|32|CP030202|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

7. spacer 1.24|979355|31|CP030202|CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgc	Protospacer
 .**************.* ****** *****

8. spacer 1.17|978990|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
tgaaaatcttctttcatagaaacgtatgtatt	Protospacer
*.**************** ** **** * .**

9. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

agcacaatcattattagatgaactt--tcatca	CRISPR spacer
aacacaagaattattagatgaacttggtgat--	Protospacer
*.*****  ****************  * **

10. spacer 1.23|979355|32|CP030202|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

11. spacer 1.28|978320|28|CP030202|PILER-CR matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 6, identity: 0.786

aaataacaacattatcagtgtgaaaagt	CRISPR spacer
caataacaaccttatcagtgtcaacttt	Protospacer
 ********* ********** **   *

12. spacer 1.4|978197|32|CP030202|CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

cagtgcggcagcgcgcaatcgagacacgccat	CRISPR spacer
cggtgcgacagcgagcaatcgagacgggctct	Protospacer
*.*****.***** ***********. **. *

13. spacer 1.15|978868|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MN693798 (Marine virus AFVG_250M119, complete genome) position: , mismatch: 7, identity: 0.781

cctcaattttgtcttcacccagccatatttgc	CRISPR spacer
gcccaattttgttttcagccagccataccagc	Protospacer
 *.*********.**** *********.. **

14. spacer 1.19|979112|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccgaaagcagataaaa	Protospacer
  ******* ********* ****** * .**

15. spacer 1.19|979112|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

16. spacer 1.19|979112|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

17. spacer 1.19|979112|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

18. spacer 1.19|979112|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

19. spacer 1.23|979355|32|CP030202|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

20. spacer 1.23|979355|32|CP030202|CRISPRCasFinder matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

21. spacer 1.24|979355|31|CP030202|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggccc	Protospacer
 ** ******* ************ . ***

22. spacer 1.24|979355|31|CP030202|CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagt	Protospacer
********* ********** *.**  *  *

23. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

24. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

25. spacer 1.29|979295|32|CP030202|PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

agcacaatcattattagatgaactt--tcatcaa	CRISPR spacer
aacacaagaattattagatgaacttggtgatg--	Protospacer
*.*****  ****************  * **

26. spacer 1.7|978380|32|CP030202|CRISPRCasFinder,CRT matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taaccatggctaagaaaaaaacttacaggact	CRISPR spacer
acattaaggctaataaaaaaacgtacaggaat	Protospacer
  *..* ****** ******** ******* *

27. spacer 1.10|978563|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

caataggacagccattcgagcgcccagagttt	CRISPR spacer
tcacaggacagctattcgagcgcccagtccgt	Protospacer
. *.********.**************  . *

28. spacer 1.19|979112|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
ttgcaacagtttctttccgcatgcagctgctt	Protospacer
 ************** ***** ****.*

29. spacer 1.19|979112|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
gttattcagtttctgaccgccagcagtttgtt	Protospacer
**    ******** ***** *********

30. spacer 1.20|979173|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

atcatcgggattcattttgttgt--ccgggtggc	CRISPR spacer
gtcatcgtgatgcattttgttgtcccctaatg--	Protospacer
.****** *** ***********  ** ..**

31. spacer 1.23|979355|32|CP030202|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

32. spacer 1.24|979355|31|CP030202|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 8, identity: 0.742

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctggcggtcgcttcctcggcgc	Protospacer
 ** **************** *** . **

33. spacer 1.7|978380|32|CP030202|CRISPRCasFinder,CRT matches to MN693898 (Marine virus AFVG_250M937, complete genome) position: , mismatch: 9, identity: 0.719

taaccatggctaagaaaaaaacttacaggact	CRISPR spacer
gaataatggctaagaaaaaagctgacagagta	Protospacer
 **. ***************.** ****...

34. spacer 1.13|978746|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

aactaacgtctatagctaaatgtagagaaaac	CRISPR spacer
taaaaggttctatagctaaaagtggagaaaat	Protospacer
 *  *.  ************ **.*******.

35. spacer 1.15|978868|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 9, identity: 0.719

cctcaattttgtcttcacccagccatatttgc	CRISPR spacer
ttgcaattttgttttcagccagccattcttta	Protospacer
.. *********.**** ******** .**

36. spacer 1.17|978990|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

37. spacer 1.17|978990|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

38. spacer 1.17|978990|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

39. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

40. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

41. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

42. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

43. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

44. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

45. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

46. spacer 1.6|978319|32|CP030202|CRISPRCasFinder,CRT matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

aaaataacaacattatcagtgtgaaaagtctc	CRISPR spacer
gcaataacaaccttatcagtgtcaactttaat	Protospacer
. ********* ********** **   *  .

47. spacer 1.11|978624|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

48. spacer 1.11|978624|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

49. spacer 1.12|978685|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

50. spacer 1.12|978685|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

51. spacer 1.20|979173|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

atcatcgggattcattttgttgtccgggtggc	CRISPR spacer
attatcaggattcattttgttgtattcatcaa	Protospacer
**.***.**************** .  .* .

52. spacer 1.21|979234|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

53. spacer 1.21|979234|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

54. spacer 1.21|979234|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

55. spacer 1.21|979234|32|CP030202|CRISPRCasFinder,CRT,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

56. spacer 1.22|979295|31|CP030202|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.677

agcacaatcattattagatgaactttcatca	CRISPR spacer
tcttatggcattattagatgaattttcaaca	Protospacer
  .   . **************.***** **

57. spacer 1.29|979295|32|CP030202|PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
tcttatggcattattagatgaattttcaacaa	Protospacer
  .   . **************.***** ***

58. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

59. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

60. spacer 1.29|979295|32|CP030202|PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

61. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

62. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

63. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

64. spacer 1.29|979295|32|CP030202|PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

658101 : 698759

Salmonella_phage(53.49%)

integrase,capsid,terminase,lysis,tRNA,portal,tail,holin,plate,head

attL 655809:655868|attR 688848:688948

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
655809:655868	attL	NA	NA	NA	NA
AXD36867.1\|658101_659130_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	5.4e-193	99.1
AXD36868.1\|659129_659711_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	6.8e-100	94.2
AXD36869.1\|659832_660096_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
AXD36870.1\|660126_660636_+	hypothetical protein	A0A0M4QWN1	Salmonella_phage	1.2e-89	98.8
AXD40684.1\|660643_660871_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	9.2e-37	97.3
AXD36871.1\|660857_661058_+	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
AXD36872.1\|661127_661355_+	DUF2732 domain-containing protein	A0A218M4I9	Erwinia_phage	3.8e-30	96.0
AXD36873.1\|661354_661579_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	4.2e-34	97.3
AXD36874.1\|661575_662097_+	hypothetical protein	Q6K1F4	Salmonella_virus	1.0e-91	99.4
AXD40685.1\|662192_664439_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	94.5
AXD36875.1\|664556_664997_+	DinI family protein	A0A218M4I0	Erwinia_phage	8.3e-66	92.0
AXD36876.1\|665079_665811_+	hypothetical protein	Q37850	Escherichia_phage	2.0e-125	92.6
AXD36877.1\|666940_667945_-	hypothetical protein	NA	NA	NA	NA
AXD36878.1\|668022_669069_-\|portal	phage portal protein	S4TNX7	Salmonella_phage	4.4e-190	99.4
AXD36879.1\|669068_670838_-	oxidoreductase	S4TT96	Salmonella_phage	0.0e+00	100.0
AXD36880.1\|671003_671858_+\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	8.9e-157	98.6
AXD36881.1\|671933_673001_+\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	2.3e-178	89.5
AXD36882.1\|673004_673754_+\|terminase	terminase	Q6K1I5	Salmonella_virus	1.8e-113	88.0
AXD36883.1\|673847_674354_+\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	8.6e-91	98.8
AXD36884.1\|674353_674557_+\|tail	phage tail protein	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
AXD36885.1\|674560_674857_+\|holin	holin	Q6K1I2	Salmonella_virus	5.8e-47	100.0
AXD36886.1\|674843_675341_+	lysozyme	S4TUB1	Salmonella_phage	5.8e-92	98.8
AXD36887.1\|675337_675751_+\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	2.6e-45	100.0
AXD36888.1\|675722_675896_+\|lysis	phage lysis protein	S4TNY4	Salmonella_phage	1.1e-24	96.5
AXD36889.1\|675858_676326_+\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
AXD36890.1\|676318_676768_+	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.2e-73	99.3
AXD36891.1\|676836_677478_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	8.2e-115	99.5
AXD36892.1\|677474_677822_+\|plate	baseplate assembly protein	S4TRW8	Salmonella_phage	2.5e-57	100.0
AXD36893.1\|677828_678737_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	8.3e-161	99.3
AXD36894.1\|678729_679260_+\|tail	phage tail protein I	S4TTA8	Salmonella_phage	1.3e-102	98.9
AXD36895.1\|679270_681382_+\|tail	phage tail protein	A0A192Y7M1	Salmonella_phage	3.8e-209	84.0
AXD36896.1\|681351_681951_+\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	8.5e-106	97.9
AXD36897.1\|682085_683273_+\|tail	phage tail protein	Q6K1H0	Salmonella_virus	4.5e-223	99.7
AXD36898.1\|683288_683807_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	98.8
AXD36899.1\|683869_684205_+\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	1.4e-52	100.0
AXD36900.1\|684201_684357_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	2.6e-22	96.1
AXD36901.1\|684349_686794_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	91.9
AXD36902.1\|686808_687294_+\|tail	phage tail protein	Q6K1G5	Salmonella_virus	3.6e-86	100.0
AXD36903.1\|687290_688460_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	5.9e-212	98.2
AXD36904.1\|688526_688745_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
AXD36905.1\|689103_689610_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
688848:688948	attR	NA	NA	NA	NA
AXD36906.1\|689732_691715_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AXD36907.1\|691729_693475_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AXD36908.1\|693710_693926_-	30S ribosomal protein S21	NA	NA	NA	NA
AXD36909.1\|694153_695167_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
AXD36910.1\|695070_695409_-	hypothetical protein	NA	NA	NA	NA
AXD36911.1\|695416_696028_-	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA
AXD36912.1\|696134_696494_+	dihydroneopterin aldolase	NA	NA	NA	NA
AXD36913.1\|696591_697413_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
AXD36914.1\|697517_698759_-\|tRNA	multifunctional tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/2'phosphatase	A0A0F6YPT7	Sinorhizobium_phage	1.5e-91	47.7

DBSCAN-SWA_2

1163316 : 1173071

Enterobacteria_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD37363.1\|1163316_1165650_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.3
AXD37364.1\|1165664_1165985_-	hypothetical protein	NA	NA	NA	NA
AXD37365.1\|1165981_1166209_-	hypothetical protein	NA	NA	NA	NA
AXD37366.1\|1166205_1166754_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	9.7e-32	69.4
AXD37367.1\|1167554_1168292_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.4e-81	66.1
AXD37368.1\|1168288_1168534_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-31	77.8
AXD37369.1\|1168550_1169117_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.0e-56	63.8
AXD37370.1\|1169158_1169266_-	acetyl xylan esterase	NA	NA	NA	NA
AXD37371.1\|1169394_1171008_+	calcineurin phosphoesterase	NA	NA	NA	NA
AXD37372.1\|1171010_1171850_+	HAD family hydrolase	NA	NA	NA	NA
AXD37373.1\|1171877_1173071_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	5.3e-107	49.6

DBSCAN-SWA_3

1712694 : 1721865

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD37850.1\|1712694_1713642_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AXD37851.1\|1713625_1714357_+	ABC transporter permease	NA	NA	NA	NA
AXD37852.1\|1714337_1714445_-	hypothetical protein	NA	NA	NA	NA
AXD37853.1\|1714504_1715236_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXD37854.1\|1715458_1717144_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXD37855.1\|1717140_1717860_+	DNA-binding response regulator	NA	NA	NA	NA
AXD37856.1\|1717906_1718374_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXD37857.1\|1718430_1718961_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXD37858.1\|1719132_1719591_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXD37859.1\|1719831_1721865_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1789956 : 1800463

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD37912.1\|1789956_1791360_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
AXD37913.1\|1791537_1792431_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXD37914.1\|1792807_1793893_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AXD37915.1\|1793892_1794792_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AXD40722.1\|1794839_1795718_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
AXD37916.1\|1795718_1796270_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
AXD37917.1\|1796275_1797250_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXD37918.1\|1797265_1798039_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXD37919.1\|1798043_1799123_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
AXD37920.1\|1799149_1800463_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_5

1893602 : 1904199

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD38005.1\|1893602_1894076_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
AXD38006.1\|1894723_1895014_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.0e-08	49.1
AXD38007.1\|1895385_1896183_-	protein MtfA	NA	NA	NA	NA
AXD38008.1\|1896663_1896825_+	hypothetical protein	NA	NA	NA	NA
AXD38009.1\|1896951_1897371_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXD38010.1\|1897373_1898642_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.1e-227	92.4
AXD38011.1\|1899095_1899308_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXD40728.1\|1899318_1899507_+	cold-shock protein	NA	NA	NA	NA
AXD38012.1\|1899767_1900961_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.0e-110	56.5
AXD38013.1\|1901608_1901920_+	hypothetical protein	NA	NA	NA	NA
AXD38014.1\|1901999_1902695_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AXD38015.1\|1902768_1904199_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2623035 : 2707488

Enterobacteria_phage(31.82%)

integrase,transposase,protease,terminase,tRNA,tail,holin

attL 2643683:2643699|attR 2707007:2707023

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD38716.1\|2623035_2623563_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AXD38717.1\|2623559_2623667_-	hypothetical protein	NA	NA	NA	NA
AXD38718.1\|2623872_2624319_+	DUF441 domain-containing protein	NA	NA	NA	NA
AXD38719.1\|2624298_2625093_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXD38720.1\|2625193_2626378_+	cyanate MFS transporter	NA	NA	NA	NA
AXD38721.1\|2626496_2626844_+	DUF488 domain-containing protein	NA	NA	NA	NA
AXD38722.1\|2626829_2627141_-	hypothetical protein	NA	NA	NA	NA
AXD38723.1\|2627209_2627461_-	DUF333 domain-containing protein	NA	NA	NA	NA
AXD38724.1\|2627656_2627755_+	hypothetical protein	NA	NA	NA	NA
AXD38725.1\|2627893_2628142_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AXD38726.1\|2628149_2628335_-	hypothetical protein	NA	NA	NA	NA
AXD38727.1\|2628456_2629098_-	hypothetical protein	NA	NA	NA	NA
AXD38728.1\|2629327_2629510_-	DUF1869 domain-containing protein	NA	NA	NA	NA
AXD38729.1\|2629512_2629875_-	DUF1971 domain-containing protein	NA	NA	NA	NA
AXD38730.1\|2629845_2630031_+	hypothetical protein	NA	NA	NA	NA
AXD38731.1\|2630047_2630686_-	leucine efflux protein	NA	NA	NA	NA
AXD38732.1\|2630881_2631427_-	chorismate mutase	NA	NA	NA	NA
AXD38733.1\|2631509_2631665_+	hypothetical protein	NA	NA	NA	NA
AXD38734.1\|2631743_2631992_+	histidine kinase	NA	NA	NA	NA
AXD38735.1\|2632246_2633095_-	MerR family transcriptional regulator	NA	NA	NA	NA
AXD40761.1\|2633163_2633757_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AXD38736.1\|2633901_2634690_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
AXD38737.1\|2634797_2635448_-	metal-binding protein ZinT	NA	NA	NA	NA
AXD38738.1\|2635641_2635968_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
AXD38739.1\|2636161_2637295_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
AXD38740.1\|2637376_2637967_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
AXD38741.1\|2637960_2638758_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	9.6e-12	31.7
AXD38742.1\|2638751_2639564_-	ABC transporter permease	NA	NA	NA	NA
AXD38743.1\|2639553_2640528_-	ABC transporter permease	NA	NA	NA	NA
AXD38744.1\|2640527_2642162_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXD38745.1\|2642843_2643158_+	hypothetical protein	NA	NA	NA	NA
AXD38746.1\|2643306_2643837_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
2643683:2643699	attL	NA	NA	NA	NA
AXD38747.1\|2643918_2644962_-	hypothetical protein	NA	NA	NA	NA
AXD38748.1\|2645300_2645771_-	heat-shock protein	NA	NA	NA	NA
AXD38749.1\|2645920_2646193_-	hypothetical protein	NA	NA	NA	NA
AXD38750.1\|2646392_2646518_-	hypothetical protein	NA	NA	NA	NA
AXD38751.1\|2646895_2647240_+	lysozyme inhibitor	NA	NA	NA	NA
AXD38752.1\|2648461_2649019_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
AXD38753.1\|2649830_2650094_+	virulence protein PagD	NA	NA	NA	NA
AXD38754.1\|2650225_2650438_+	cold-shock protein CspH	NA	NA	NA	NA
AXD38755.1\|2650852_2651374_+	lipoprotein	NA	NA	NA	NA
AXD38756.1\|2651564_2651804_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	1.9e-32	87.3
AXD38757.1\|2652293_2653082_+	lipoprotein EnvF	NA	NA	NA	NA
AXD38758.1\|2655696_2656155_-\|transposase	IS200/IS605 family transposase IS200F	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
AXD38759.1\|2656350_2656518_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.6e-20	90.7
AXD38760.1\|2656657_2657011_+	hypothetical protein	NA	NA	NA	NA
AXD40762.1\|2659016_2660633_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AXD38761.1\|2661689_2661998_-	hypothetical protein	K7PGV5	Enterobacterial_phage	3.8e-25	56.1
AXD38762.1\|2663139_2663655_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	2.2e-46	53.5
AXD38763.1\|2666296_2666539_-	hypothetical protein	NA	NA	NA	NA
AXD38764.1\|2666577_2669940_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.6
AXD38765.1\|2670001_2670649_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
AXD38766.1\|2671287_2671986_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.2e-103	75.9
AXD38767.1\|2671995_2672325_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	71.3
AXD38768.1\|2675338_2675677_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AXD38769.1\|2675673_2676069_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AXD38770.1\|2676119_2676866_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AXD38771.1\|2676873_2677275_-\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	4.2e-48	66.2
AXD38772.1\|2677271_2677856_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.4e-75	77.1
AXD38773.1\|2677859_2678135_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	6.0e-14	42.9
AXD38774.1\|2678127_2678451_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	1.0e-28	63.2
AXD38775.1\|2678539_2680720_-\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	3.9e-273	72.3
AXD38776.1\|2682103_2682310_-	primosomal replication protein PriB/PriC domain protein	A5LH28	Enterobacteria_phage	1.1e-07	48.6
AXD38777.1\|2682306_2684415_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	2.1e-292	70.4
AXD38778.1\|2684401_2684893_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	4.5e-44	57.5
AXD40763.1\|2684948_2685170_+	hypothetical protein	NA	NA	NA	NA
AXD38779.1\|2685245_2685437_+	hypothetical protein	NA	NA	NA	NA
AXD38780.1\|2685491_2685995_-	hypothetical protein	NA	NA	NA	NA
AXD38781.1\|2686097_2686640_-	DUF2514 family protein	NA	NA	NA	NA
AXD38782.1\|2686636_2687251_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.1e-107	91.7
AXD38783.1\|2687250_2687532_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.2e-19	47.3
AXD38784.1\|2687518_2687905_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	3.1e-56	91.4
AXD38785.1\|2687998_2689390_-	ATP-binding protein	NA	NA	NA	NA
AXD38786.1\|2689532_2690111_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-49	56.7
AXD40764.1\|2690125_2691115_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.3e-191	98.2
AXD38787.1\|2691122_2691923_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	1.1e-105	72.2
AXD38788.1\|2691939_2692329_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	2.4e-69	99.2
AXD38789.1\|2692325_2694146_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.3e-192	54.1
AXD38790.1\|2694138_2695017_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	4.5e-148	87.4
AXD38791.1\|2695016_2695541_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	4.5e-95	98.3
AXD38792.1\|2695500_2696460_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	7.0e-126	85.0
AXD38793.1\|2696456_2696681_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AXD38794.1\|2696677_2697820_-	peptidase	Q8HA97	Salmonella_phage	1.1e-178	85.5
AXD38795.1\|2697816_2698371_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
AXD38796.1\|2698399_2698624_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AXD38797.1\|2698721_2699417_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
AXD38798.1\|2699829_2700060_-	hypothetical protein	NA	NA	NA	NA
AXD38799.1\|2700115_2700373_-	hypothetical protein	A5LH65	Enterobacteria_phage	2.1e-08	75.7
AXD38800.1\|2700356_2700728_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
AXD38801.1\|2700785_2701613_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	1.1e-151	98.9
AXD38802.1\|2701976_2702222_+	excisionase	NA	NA	NA	NA
AXD38803.1\|2702202_2703330_+\|integrase	integrase	Q77Z04	Phage_21	2.1e-121	59.5
AXD38804.1\|2703441_2704692_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AXD38805.1\|2704863_2705529_+	23S rRNA pseudouridine synthase E	NA	NA	NA	NA
AXD38806.1\|2705525_2705855_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AXD38807.1\|2705866_2706328_+	NUDIX hydrolase	NA	NA	NA	NA
AXD38808.1\|2706381_2707488_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2707007:2707023	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2852292 : 2941350

Salmonella_phage(46.55%)

transposase,protease,capsid,terminase,lysis,tRNA,portal,tail,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD38958.1\|2852292_2852973_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
AXD38959.1\|2853591_2854251_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AXD38960.1\|2854337_2854667_+	sulfurtransferase TusE	NA	NA	NA	NA
AXD38961.1\|2854663_2854945_-	acylphosphatase	NA	NA	NA	NA
AXD38962.1\|2854993_2855773_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXD38963.1\|2855798_2856347_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AXD38964.1\|2856561_2857773_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AXD38965.1\|2857830_2858148_+	heat-shock protein HspQ	NA	NA	NA	NA
AXD38966.1\|2858192_2858609_-	CoA-binding protein	NA	NA	NA	NA
AXD38967.1\|2858779_2859442_+	DUF2057 family protein	NA	NA	NA	NA
AXD38968.1\|2859536_2859995_+	methylglyoxal synthase	NA	NA	NA	NA
AXD38969.1\|2860030_2862085_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AXD38970.1\|2862208_2862655_+	YccF domain-containing protein	NA	NA	NA	NA
AXD38971.1\|2862673_2864827_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AXD38972.1\|2864813_2865419_-	DNA transformation protein	NA	NA	NA	NA
AXD38973.1\|2865635_2866145_+	cell division inhibitor SulA	NA	NA	NA	NA
AXD38974.1\|2866501_2867554_+	porin OmpA	NA	NA	NA	NA
AXD38975.1\|2867625_2868078_-	macrodomain Ter protein	NA	NA	NA	NA
AXD38976.1\|2868263_2870024_+\|protease	Lon protease family protein	NA	NA	NA	NA
AXD38977.1\|2870092_2870611_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AXD38978.1\|2870710_2870878_-	ribosome modulation factor	NA	NA	NA	NA
AXD38979.1\|2871133_2871697_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AXD38980.1\|2871693_2873334_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AXD38981.1\|2873338_2874592_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
AXD38982.1\|2874606_2876514_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AXD38983.1\|2876526_2878635_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AXD38984.1\|2878733_2879843_+	MOSC domain-containing protein	NA	NA	NA	NA
AXD38985.1\|2879839_2880382_-	cell division protein ZapC	NA	NA	NA	NA
AXD38986.1\|2880547_2881558_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AXD38987.1\|2881765_2884378_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
AXD38988.1\|2884804_2884996_+	DinI family protein	S4TNM0	Salmonella_phage	2.3e-25	93.7
AXD38989.1\|2885266_2885953_+	virulence protein	NA	NA	NA	NA
AXD38990.1\|2886031_2886151_-	hypothetical protein	A0A0M4RTP2	Salmonella_phage	2.6e-06	71.9
AXD38991.1\|2886888_2887155_-	hypothetical protein	NA	NA	NA	NA
AXD38992.1\|2887282_2887408_-	arsenic transporter	NA	NA	NA	NA
AXD38993.1\|2887977_2888178_+	phage virulence factor	NA	NA	NA	NA
AXD38994.1\|2889608_2889842_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	2.0e-34	94.8
AXD38995.1\|2890116_2890758_+	glutathione S-transferase family protein	NA	NA	NA	NA
AXD38996.1\|2890928_2891447_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	5.9e-47	53.8
AXD38997.1\|2891461_2894143_-	shikimate transporter	A0A1B0VFW4	Salmonella_phage	2.4e-147	64.2
AXD38998.1\|2894198_2894441_-	hypothetical protein	NA	NA	NA	NA
AXD38999.1\|2894479_2895355_-\|tail	phage tail protein	C6ZCZ5	Enterobacteria_phage	1.5e-50	80.5
AXD39000.1\|2895470_2896049_-	hypothetical protein	A5LH43	Enterobacteria_phage	1.7e-74	72.0
AXD39001.1\|2897904_2898552_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
AXD39002.1\|2898449_2899187_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.0e-129	85.0
AXD39003.1\|2899193_2899892_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.2e-103	75.9
AXD39004.1\|2899901_2900231_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	71.3
AXD39005.1\|2900236_2903275_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.3e-290	64.3
AXD39006.1\|2903246_2903585_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AXD39007.1\|2903581_2903977_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AXD39008.1\|2904027_2904774_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	6.0e-101	77.3
AXD39009.1\|2904781_2905183_-\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AXD39010.1\|2905179_2905758_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
AXD39011.1\|2905866_2906997_+\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	1.2e-212	97.9
AXD39012.1\|2907029_2907413_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	1.2e-28	55.6
AXD39013.1\|2907423_2907789_-	DNA packaging protein	NA	NA	NA	NA
AXD39014.1\|2907846_2908875_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AXD39015.1\|2908929_2909277_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.2e-19	52.7
AXD39016.1\|2909289_2910786_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.3e-98	52.7
AXD39017.1\|2910775_2912356_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.3e-189	62.7
AXD39018.1\|2912352_2912556_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AXD39019.1\|2912539_2914471_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.2e-259	65.9
AXD39020.1\|2914442_2914988_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.9e-56	79.9
AXD39021.1\|2915273_2915675_+	inhibitor of g-type lysozyme	NA	NA	NA	NA
AXD40771.1\|2915900_2916344_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	7.3e-54	81.1
AXD39022.1\|2916376_2917003_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	2.7e-94	80.2
AXD39023.1\|2917005_2917353_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.8e-46	80.4
AXD39024.1\|2918218_2918404_-	hypothetical protein	NA	NA	NA	NA
AXD39025.1\|2918400_2919078_-	antiterminator	I6PDF8	Cronobacter_phage	8.6e-62	53.6
AXD39026.1\|2919074_2919602_-	HNH endonuclease	Q5DMP6	Escherichia_phage	3.6e-23	41.4
AXD39027.1\|2919598_2919739_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	6.1e-07	70.7
AXD39028.1\|2919735_2920347_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
AXD39029.1\|2920349_2920556_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AXD39030.1\|2920555_2921158_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	1.4e-108	98.0
AXD39031.1\|2921192_2921441_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	8.0e-42	98.8
AXD39032.1\|2921560_2921794_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AXD39033.1\|2922063_2923056_+	peptidase M85	NA	NA	NA	NA
AXD39034.1\|2923082_2923616_-	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	3.8e-41	67.9
AXD39035.1\|2923612_2923960_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.3e-58	99.1
AXD39036.1\|2923970_2924720_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
AXD39037.1\|2924722_2925706_-	hypothetical protein	H6WRX7	Salmonella_phage	2.0e-160	99.0
AXD39038.1\|2925790_2926114_-	transcriptional regulator	H6WRX6	Salmonella_phage	7.2e-27	59.1
AXD39039.1\|2926133_2926370_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.3e-38	100.0
AXD40772.1\|2926473_2926857_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.3e-62	99.2
AXD39040.1\|2926884_2927286_+	helix-turn-helix domain-containing protein	A0A0M4REM4	Salmonella_phage	6.8e-67	99.2
AXD39041.1\|2927702_2927873_+	hypothetical protein	H6WRX3	Salmonella_phage	3.3e-15	78.8
AXD39042.1\|2927894_2928245_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
AXD39043.1\|2928371_2931572_+	DNA breaking-rejoining protein	S4TNL0	Salmonella_phage	0.0e+00	78.7
AXD39044.1\|2931534_2932692_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AXD39045.1\|2932734_2932974_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AXD39046.1\|2933014_2933263_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AXD39047.1\|2933307_2934600_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0
AXD39048.1\|2934794_2935997_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AXD39049.1\|2936077_2937511_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AXD39050.1\|2937756_2938971_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AXD39051.1\|2939057_2939291_+	hypothetical protein	NA	NA	NA	NA
AXD39052.1\|2939287_2939749_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AXD39053.1\|2939949_2941350_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1

DBSCAN-SWA_8

4098495 : 4109169

Enterobacteria_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD40072.1\|4098495_4100829_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.7
AXD40073.1\|4100843_4101164_-	hypothetical protein	NA	NA	NA	NA
AXD40074.1\|4101160_4101388_-	hypothetical protein	NA	NA	NA	NA
AXD40075.1\|4101384_4101936_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.0e-24	60.9
AXD40076.1\|4102736_4103474_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	2.2e-79	64.0
AXD40077.1\|4103470_4103716_+	hypothetical protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
AXD40078.1\|4103732_4104299_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7
AXD40079.1\|4104262_4104448_-	hypothetical protein	NA	NA	NA	NA
AXD40080.1\|4104518_4105082_-	restriction endonuclease	A0A1B0UXL9	Roseobacter_phage	5.5e-30	42.9
AXD40081.1\|4105078_4105315_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXD40082.1\|4105370_4106366_+	site-specific DNA-methyltransferase	S0A236	Cellulophaga_phage	3.5e-19	24.2
AXD40083.1\|4106419_4107679_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.7e-74	41.2
AXD40084.1\|4108149_4109169_+	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	7.9e-43	30.1

DBSCAN-SWA_9

4353614 : 4398389

Burkholderia_phage(36.36%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD40298.1\|4353614_4354613_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AXD40299.1\|4354700_4356011_-	conjugal transfer protein	NA	NA	NA	NA
AXD40300.1\|4356257_4356773_+	transcriptional regulator Zur	NA	NA	NA	NA
AXD40301.1\|4356871_4357081_-	CsbD family protein	NA	NA	NA	NA
AXD40830.1\|4357102_4357216_-	hypothetical protein	NA	NA	NA	NA
AXD40302.1\|4357212_4358538_-	MATE family efflux transporter	NA	NA	NA	NA
AXD40303.1\|4358716_4359325_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AXD40304.1\|4359433_4359802_-	diacylglycerol kinase	NA	NA	NA	NA
AXD40305.1\|4359972_4362393_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AXD40306.1\|4362491_4363364_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AXD40307.1\|4363377_4363875_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AXD40308.1\|4364055_4364973_-	maltose operon protein MalM	NA	NA	NA	NA
AXD40309.1\|4365136_4366492_-	maltoporin LamB	NA	NA	NA	NA
AXD40310.1\|4366580_4367690_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AXD40311.1\|4368051_4369242_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
AXD40312.1\|4369373_4370918_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AXD40313.1\|4370932_4371823_+	maltose ABC transporter permease	NA	NA	NA	NA
AXD40314.1\|4371988_4372399_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AXD40315.1\|4372541_4374638_-	YjbH domain-containing protein	NA	NA	NA	NA
AXD40316.1\|4374637_4375375_-	hypothetical protein	NA	NA	NA	NA
AXD40317.1\|4375371_4376010_-	YjbF family lipoprotein	NA	NA	NA	NA
AXD40318.1\|4376073_4376316_-	outer membrane protein	NA	NA	NA	NA
AXD40319.1\|4376759_4378409_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AXD40320.1\|4378753_4380103_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AXD40321.1\|4380233_4380581_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AXD40322.1\|4381157_4381445_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
AXD40323.1\|4381447_4382053_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	7.2e-60	59.4
AXD40324.1\|4382065_4382380_+	hypothetical protein	Q6QIC4	Burkholderia_phage	3.2e-19	48.2
AXD40325.1\|4382539_4382995_+	hypothetical protein	NA	NA	NA	NA
AXD40326.1\|4382991_4383189_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AXD40327.1\|4383178_4384606_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	70.9
AXD40328.1\|4384605_4385130_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	3.6e-68	69.5
AXD40329.1\|4385181_4385499_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AXD40330.1\|4385458_4385587_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AXD40331.1\|4385683_4388038_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-67	30.8
AXD40332.1\|4388037_4388991_+	chemotaxis protein	A4JWL1	Burkholderia_virus	1.0e-36	51.5
AXD40333.1\|4388990_4389200_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AXD40334.1\|4389187_4390231_+	phage protein D	A4JWL3	Burkholderia_virus	5.0e-77	45.9
AXD40335.1\|4390240_4390963_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AXD40336.1\|4390971_4391214_+	hypothetical protein	NA	NA	NA	NA
AXD40337.1\|4391289_4391652_+	GtrA family protein	U5P0S6	Shigella_phage	1.2e-43	70.8
AXD40338.1\|4391648_4392578_+	glycosyltransferase	S5FKN0	Shigella_phage	1.5e-149	83.4
AXD40339.1\|4392577_4394125_+	hypothetical protein	B9UDL6	Salmonella_phage	1.1e-48	29.9
AXD40340.1\|4394288_4394648_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AXD40341.1\|4394638_4395754_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AXD40342.1\|4395746_4396379_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AXD40343.1\|4396381_4397863_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
AXD40344.1\|4397873_4398389_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage