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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP030208 Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence 0 crisprs cas14j 0 0 1 0
CP030207 Salmonella enterica strain SA19992307 chromosome, complete genome 2 crisprs PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,DEDDh,DinG 0 2 11 0

Results visualization

1. CP030208
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14471 : 45444 41 Escherichia_phage(22.22%) integrase,transposase,coat attL 11097:11111|attR 27331:27345
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP030207
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP030207_1 940278-940611 TypeI-E I-E
5 spacers
cas8e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP030207_2 956768-956916 TypeI-E I-E
2 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP030207_1 1.2|940368|32|CP030207|CRISPRCasFinder 940368-940399 32 MG592432 Vibrio phage 1.050.O._10N.286.48.A6, partial genome 21687-21718 8 0.75
CP030207_1 1.2|940368|32|CP030207|CRISPRCasFinder 940368-940399 32 MG592431 Vibrio phage 1.049.O._10N.286.54.B5, partial genome 21426-21457 8 0.75
CP030207_1 1.3|940429|32|CP030207|CRISPRCasFinder 940429-940460 32 MG592432 Vibrio phage 1.050.O._10N.286.48.A6, partial genome 21687-21718 8 0.75
CP030207_1 1.3|940429|32|CP030207|CRISPRCasFinder 940429-940460 32 MG592431 Vibrio phage 1.049.O._10N.286.54.B5, partial genome 21426-21457 8 0.75
CP030207_1 1.2|940368|32|CP030207|CRISPRCasFinder 940368-940399 32 NC_047790 Pseudoalteromonas phage C5a, complete genome 34441-34472 9 0.719
CP030207_1 1.3|940429|32|CP030207|CRISPRCasFinder 940429-940460 32 NC_047790 Pseudoalteromonas phage C5a, complete genome 34441-34472 9 0.719

1. spacer 1.2|940368|32|CP030207|CRISPRCasFinder matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

2. spacer 1.2|940368|32|CP030207|CRISPRCasFinder matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

3. spacer 1.3|940429|32|CP030207|CRISPRCasFinder matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

4. spacer 1.3|940429|32|CP030207|CRISPRCasFinder matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

5. spacer 1.2|940368|32|CP030207|CRISPRCasFinder matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
tttggtgtctgtgccgttttcgtcaataagct	Protospacer
.*    ********.*** ********** * 

6. spacer 1.3|940429|32|CP030207|CRISPRCasFinder matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
tttggtgtctgtgccgttttcgtcaataagct	Protospacer
.*    ********.*** ********** * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1118051 : 1183824 65 Salmonella_phage(87.8%) tRNA,capsid,tail,plate,transposase,portal,integrase,lysis,head attL 1121088:1121103|attR 1134356:1134371
DBSCAN-SWA_2 1446930 : 1452966 6 Salmonella_virus(50.0%) NA NA
DBSCAN-SWA_3 1689521 : 1698692 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1765889 : 1776396 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_5 1889304 : 1935516 63 Salmonella_phage(86.54%) terminase,capsid,tail,plate,transposase,holin,portal,integrase,head attL 1887281:1887295|attR 1907596:1907610
DBSCAN-SWA_6 2628332 : 2726859 104 Enterobacteria_phage(24.49%) tRNA,terminase,tail,protease,holin,portal,integrase,lysis attL 2703225:2703239|attR 2728628:2728642
DBSCAN-SWA_7 2828958 : 2838666 12 Burkholderia_phage(28.57%) NA NA
DBSCAN-SWA_8 2923588 : 2967548 42 Escherichia_phage(35.71%) protease,tail NA
DBSCAN-SWA_9 2974490 : 3000124 32 Salmonella_phage(72.41%) terminase,holin NA
DBSCAN-SWA_10 3071093 : 3078406 7 Ralstonia_phage(16.67%) integrase,protease attL 3066149:3066163|attR 3077142:3077156
DBSCAN-SWA_11 3420418 : 3461650 62 Salmonella_phage(68.85%) terminase,tail,coat,protease,holin,portal,integrase,lysis attL 3415691:3415731|attR 3461668:3461708
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage