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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP030204 Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence 0 crisprs NA 0 0 1 0
CP030205 Salmonella enterica strain SA20083530 plasmid pSA20083530.2, complete sequence 0 crisprs NA 0 0 0 0
CP030206 Salmonella enterica strain SA20083530 plasmid pSA20083530.3, complete sequence 0 crisprs NA 0 0 0 0
CP030203 Salmonella enterica strain SA20083530 chromosome, complete genome 0 crisprs PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4 0 0 19 0

Results visualization

1. CP030204
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 6435 : 69295 56 Enterobacteria_phage(20.0%) integrase,transposase attL 4094:4108|attR 28341:28355
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP030203
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 700084 : 752044 48 Vibrio_phage(25.0%) lysis,protease,head,tail,tRNA,portal,integrase attL 709771:709786|attR 740357:740372
DBSCAN-SWA_2 939793 : 979205 47 Cronobacter_phage(69.44%) head,tail,capsid,tRNA,terminase,holin,portal,integrase attL 939611:939670|attR 969318:969414
DBSCAN-SWA_3 1441626 : 1579601 146 Salmonella_phage(22.58%) lysis,plate,tail,head,transposase,capsid,tRNA,terminase,holin,portal,integrase attL 1525081:1525099|attR 1553600:1553618
DBSCAN-SWA_4 1703032 : 1796056 93 Enterobacteria_phage(53.12%) lysis,plate,protease,tail,transposase,capsid,tRNA,terminase,holin,integrase attL 1723853:1723870|attR 1798215:1798232
DBSCAN-SWA_5 1845659 : 1890186 71 Salmonella_phage(69.7%) lysis,protease,tail,transposase,terminase,portal,integrase,coat attL 1846755:1846769|attR 1890350:1890364
DBSCAN-SWA_6 2116056 : 2125227 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_7 2193596 : 2199902 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_8 2280956 : 2333787 62 Salmonella_phage(45.65%) lysis,plate,head,tail,holin,integrase attL 2275268:2275282|attR 2325513:2325527
DBSCAN-SWA_9 2372145 : 2408593 52 Salmonella_phage(41.46%) lysis,head,tail,capsid,holin,integrase attL 2366397:2366411|attR 2390476:2390490
DBSCAN-SWA_10 2485304 : 2528140 63 Salmonella_phage(18.18%) integrase,head,lysis,tail attL 2487511:2487540|attR 2531381:2531410
DBSCAN-SWA_11 2531545 : 2538550 9 Salmonella_phage(50.0%) integrase,tail attL 2530530:2530543|attR 2535022:2535035
DBSCAN-SWA_12 2713823 : 2720485 9 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_13 3190920 : 3195331 6 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_14 3349996 : 3393891 60 Escherichia_phage(35.14%) lysis,tail,transposase,terminase,integrase attL 3389648:3389662|attR 3396129:3396143
DBSCAN-SWA_15 3457372 : 3545574 71 Vibrio_phage(20.59%) lysis,plate,protease,tail,head,transposase,tRNA,holin NA
DBSCAN-SWA_16 3549798 : 3563027 22 Escherichia_phage(28.57%) NA NA
DBSCAN-SWA_17 4833165 : 4865531 39 Aeromonas_phage(25.0%) lysis,tail,head,tRNA,terminase,holin,integrase attL 4832960:4832974|attR 4850106:4850120
DBSCAN-SWA_18 4869820 : 4882269 16 Escherichia_phage(30.0%) NA NA
DBSCAN-SWA_19 4981488 : 5038314 52 Enterobacteria_phage(72.0%) lysis,plate,tail,capsid,tRNA,terminase,holin,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage