CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP030213	Salmonella enterica strain SA20051528 plasmid pSA20051528.2, complete sequence	0 crisprs	NA	0	0	0
CP030211	Salmonella enterica strain SA20051528 chromosome, complete genome	2 crisprs	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT	1	23	8
CP030212	Salmonella enterica strain SA20051528 plasmid pSA20051528.1, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030211_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030211_1

968951-969893

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
NGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

15 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of CP030211_1

>merge|CP030211|1|968951-969893|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCATGATCCTGCTTATCGATAACTATGATTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCGCGCGCAGTACGAACAGGCGCACCGGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAAGAACGGCCAGCCCGTCGAGGTATCAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTGTCGTTGCTGGACAGAACTCCGGGGACGGTGTTCCCCGCGCCAGCGGGGATAAACCGGATCGCTCATGATTGATCGAGCTGGTGGCCACGTGTTCCCCGCGCCAGCGGGGATAAACCGACCAGGCTACCCGCGCGGTAGTTCGTCGGCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTTTGGAGTCAATGTTATTTCTTCAGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAGTGCAACGCCGGTGATTTTACCAGTATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCAACAGTTTCTTACCGCAAGCAGTTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCCCCCGCCTGATAATTACGCCATCTGCAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGATATAGCAACTTTTTTAACTATTGCGTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATCATCGGGATTCATTTTGTTGTCCGGGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCTCTATGTCTAAAAATAAAAGCGGTTCGTGTTCCCTGCGCCAGCGGGGATAAACCCAGCACAATCATTATTAGATGAACTTTCATCAAGTGTTCCCCGCGCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGTCAGCGGGGATAGCCGT

>CP030211|1|1|968951-969832|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATGATCCTGCTTATCGATAACTATGATTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCGCGCGCAGTACGAACAGGCGCACCGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGAACGGCCAGCCCGTCGAGGTATCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGTCGTTGCTGGACAGAACTCCGGGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGCTCATGATTGATCGAGCTGGTGGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCCCGCCTGATAATTACGCCATCTGCAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATATAGCAACTTTTTTAACTATTGCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCAGCGGGGATAAACCG

>CP030211|1|1|968951-969893|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATGATCCTGCTTATCGATAACTATGATTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCGCGCGCAGTACGAACAGGCGCACCGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGAACGGCCAGCCCGTCGAGGTATCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGTCGTTGCTGGACAGAACTCCGGGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGCTCATGATTGATCGAGCTGGTGGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCCCGCCTGATAATTACGCCATCTGCAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATATAGCAACTTTTTTAACTATTGCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGTCAGCGGGGATAGCCGT

>CP030211|1|1|968951-969892|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATGATCCTGCTTATCGATAACTATGATTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCGCGCGCAGTACGAACAGGCGCACCGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGAACGGCCAGCCCGTCGAGGTATCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGTCGTTGCTGGACAGAACTCCGGGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGCTCATGATTGATCGAGCTGGTGGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCCCGCCTGATAATTACGCCATCTGCAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATATAGCAACTTTTTTAACTATTGCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCG
TGTGTTCCCCGCGTCAGCGGGGATAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030211.1\|AXD59737.1\|971168_971339_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP030211.1\|AXD56242.1\|955935_958692_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP030211.1\|AXD56259.1\|982018_982621_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP030211.1\|AXD56255.1\|975250_975985_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030211.1\|AXD56245.1\|962414_962771_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP030211.1\|AXD56244.1\|960096_962331_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP030211.1\|AXD56254.1\|973462_975175_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030211.1\|AXD56252.1\|970877_971240_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030211.1\|AXD56258.1\|980466_982002_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030211.1\|AXD56256.1\|976072_977026_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030211.1\|AXD56250.1\|967982_968654_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030211.1\|AXD56241.1\|954749_955892_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP030211.1\|AXD56248.1\|964828_966466_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP030211.1\|AXD56251.1\|969990_970788_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP030211.1\|AXD56249.1\|966548_967847_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030211.1\|AXD56257.1\|977409_980109_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030211.1\|AXD56243.1\|958749_960045_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP030211.1\|AXD56246.1\|962736_963033_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP030211.1\|AXD56253.1\|971663_973463_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030211.1\|AXD56247.1\|963800_964601_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569

Protein	Function_ID	Function_description	E-value
CP030211.1\|AXD56242.1\|955935_958692_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP030211.1\|AXD56259.1\|982018_982621_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.07044e-37
CP030211.1\|AXD56255.1\|975250_975985_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.32701e-138
CP030211.1\|AXD56245.1\|962414_962771_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP030211.1\|AXD56244.1\|960096_962331_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP030211.1\|AXD56254.1\|973462_975175_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030211.1\|AXD56252.1\|970877_971240_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030211.1\|AXD56258.1\|980466_982002_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030211.1\|AXD56256.1\|976072_977026_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030211.1\|AXD56250.1\|967982_968654_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP030211.1\|AXD56241.1\|954749_955892_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP030211.1\|AXD56248.1\|964828_966466_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030211.1\|AXD56251.1\|969990_970788_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	6.32701e-103
CP030211.1\|AXD56249.1\|966548_967847_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030211.1\|AXD56257.1\|977409_980109_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.1133e-141
CP030211.1\|AXD56243.1\|958749_960045_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP030211.1\|AXD56246.1\|962736_963033_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.09008e-13
CP030211.1\|AXD56253.1\|971663_973463_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030211.1\|AXD56247.1\|963800_964601_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158

>CP030211.1|AXD56250.1|967982_968654_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030211.1|AXD56249.1|966548_967847_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030211.1|AXD56248.1|964828_966466_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030211.1|AXD56247.1|963800_964601_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030211.1|AXD56246.1|962736_963033_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP030211.1|AXD56245.1|962414_962771_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP030211.1|AXD56244.1|960096_962331_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP030211.1|AXD56243.1|958749_960045_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP030211.1|AXD56242.1|955935_958692_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP030211.1|AXD56241.1|954749_955892_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLETALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTEDVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP030211.1|AXD56251.1|969990_970788_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFDGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030211.1|AXD56252.1|970877_971240_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030211.1|AXD59737.1|971168_971339_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKAILRLVTGN
>CP030211.1|AXD56253.1|971663_973463_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030211.1|AXD56254.1|973462_975175_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDQLIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030211.1|AXD56255.1|975250_975985_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEINAQLETLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLATQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030211.1|AXD56256.1|976072_977026_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP030211.1|AXD56257.1|977409_980109_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPNSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPQQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPILHILAPHWQEQAEESWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDAGEASYYSKRFGLVG
>CP030211.1|AXD56258.1|980466_982002_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHLLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQELASSYRKHKARKDVLALVE
>CP030211.1|AXD56259.1|982018_982621_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNRIRWANEYLSTSRGK

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Crispr_ID: CP030211_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030211_2

986439-987748

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCNAGCGGGGATAAACCG	CRT

21 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030211_2

>merge|CP030211|2|986439-987748|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCTGCGCGTAACGCTGCGCGGCGTGGATCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTCACTAACGAGCGCCAGCAGGTGACGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTCTGACTGTGATGATGCCGGAACGCTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTCGTCGAAACCACTTGTTATGACCGGCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTGTTTCAGCGCCGATGCAACGAAAAGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGATTTTCAAGATGCGCGTAACGGTCATTATGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGCCGCTTCTTTTCTCTATACAGATCTTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAACTCCACCGTATCGCCAACCAGTAATTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGACCAAAATCCTGATCCCACGTTACGGCCCACAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTAAATGACGTGCAGGAATACTGGATTCACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACGCTCCCTCACCGAGCAGCGGCAAACATAGTGTTCCCCGCGCTAGCGGGGATAAACCGAGTTCAACCGATTTTTTACACGGCGTTCGCACGTGTTCCCCGCGCTAGCGGGGATAAACCGACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAAGTGTTCCCCGCGCTAGCGGGGATAAACCGCGTTGGATGACCTGCTCCTGGATACGTGGCAAGTGTTCCCCGCGCTAGCGGGGATAATCCGGCAAAACCACGTGGCCGCGACGGGGTAAATAAGTGTTCCCCGCGCTAGCGGGGATAAACCGCCGACATCAACAGCATGGCCTACGTGTGTAACGTGTTCCCCGCGCTAGCGGGGATAAACCGGCGCGGGAACGTGGGATGATGCCAGGACCATCGTGTTCCCCGCGCTAGCGGGGATAAACCGCCAGATCGCGCAAATCGCTGCGAGTATTCAGGGTGTTCCCCGCGTCAGCGGGGATAAACCGTCCACGTCGCCCGCCATCAGGTTCGCCAGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030211|2|2|986439-987687|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCGCGTAACGCTGCGCGGCGTGGATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCACTAACGAGCGCCAGCAGGTGACGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCTGACTGTGATGATGCCGGAACGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTCGTCGAAACCACTTGTTATGACCGGCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGATTTTCAAGATGCGCGTAACGGTCATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCCGCTTCTTTTCTCTATACAGATCTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACTCCACCGTATCGCCAACCAGTAATTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAAAATCCTGATCCCACGTTACGGCCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAAATGACGTGCAGGAATACTGGATTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGCTCCCTCACCGAGCAGCGGCAAACATA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGTTCAACCGATTTTTTACACGGCGTTCGCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTTGGATGACCTGCTCCTGGATACGTGGCAA
GTGTTCCCCGCGCTAGCGGGGATAATCCG	GCAAAACCACGTGGCCGCGACGGGGTAAATAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGACATCAACAGCATGGCCTACGTGTGTAAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCGCGGGAACGTGGGATGATGCCAGGACCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP030211|2|2|986439-987748|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCGCGTAACGCTGCGCGGCGTGGATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCACTAACGAGCGCCAGCAGGTGACGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCTGACTGTGATGATGCCGGAACGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTCGTCGAAACCACTTGTTATGACCGGCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGATTTTCAAGATGCGCGTAACGGTCATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCCGCTTCTTTTCTCTATACAGATCTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACTCCACCGTATCGCCAACCAGTAATTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAAAATCCTGATCCCACGTTACGGCCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAAATGACGTGCAGGAATACTGGATTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGCTCCCTCACCGAGCAGCGGCAAACATA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGTTCAACCGATTTTTTACACGGCGTTCGCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTTGGATGACCTGCTCCTGGATACGTGGCAA
GTGTTCCCCGCGCTAGCGGGGATAATCCG	GCAAAACCACGTGGCCGCGACGGGGTAAATAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGACATCAACAGCATGGCCTACGTGTGTAAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCGCGGGAACGTGGGATGATGCCAGGACCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030211|2|2|986439-987748|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCGCGTAACGCTGCGCGGCGTGGATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCACTAACGAGCGCCAGCAGGTGACGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCTGACTGTGATGATGCCGGAACGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTCGTCGAAACCACTTGTTATGACCGGCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGATTTTCAAGATGCGCGTAACGGTCATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCCGCTTCTTTTCTCTATACAGATCTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACTCCACCGTATCGCCAACCAGTAATTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAAAATCCTGATCCCACGTTACGGCCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAAATGACGTGCAGGAATACTGGATTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGCTCCCTCACCGAGCAGCGGCAAACATA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGTTCAACCGATTTTTTACACGGCGTTCGCAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTTGGATGACCTGCTCCTGGATACGTGGCAA
GTGTTCCCCGCGCTAGCGGGGATAATCCG	GCAAAACCACGTGGCCGCGACGGGGTAAATAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGACATCAACAGCATGGCCTACGTGTGTAAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCGCGGGAACGTGGGATGATGCCAGGACCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030211.1\|AXD56259.1\|982018_982621_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP030211.1\|AXD56272.1\|993613_994093_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030211.1\|AXD56261.1\|983711_984437_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP030211.1\|AXD56266.1\|989059_989968_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030211.1\|AXD56262.1\|984436_985141_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP030211.1\|AXD56263.1\|985140_986058_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030211.1\|AXD56271.1\|992903_993614_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030211.1\|AXD56258.1\|980466_982002_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030211.1\|AXD56260.1\|982637_983702_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP030211.1\|AXD56256.1\|976072_977026_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030211.1\|AXD56274.1\|995119_995881_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030211.1\|AXD56268.1\|991403_992009_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030211.1\|AXD56267.1\|989977_991417_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP030211.1\|AXD56257.1\|977409_980109_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030211.1\|AXD56270.1\|992573_992885_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030211.1\|AXD56273.1\|994089_995139_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP030211.1\|AXD56255.1\|975250_975985_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030211.1\|AXD56265.1\|987762_988809_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030211.1\|AXD56269.1\|992026_992383_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030211.1\|AXD56264.1\|986060_986354_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
CP030211.1\|AXD56259.1\|982018_982621_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.07044e-37
CP030211.1\|AXD56272.1\|993613_994093_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
CP030211.1\|AXD56261.1\|983711_984437_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
CP030211.1\|AXD56266.1\|989059_989968_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030211.1\|AXD56262.1\|984436_985141_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.07617e-89
CP030211.1\|AXD56263.1\|985140_986058_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.94286e-157
CP030211.1\|AXD56271.1\|992903_993614_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP030211.1\|AXD56258.1\|980466_982002_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030211.1\|AXD56260.1\|982637_983702_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	8.72775e-121
CP030211.1\|AXD56256.1\|976072_977026_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030211.1\|AXD56274.1\|995119_995881_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP030211.1\|AXD56268.1\|991403_992009_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP030211.1\|AXD56267.1\|989977_991417_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030211.1\|AXD56257.1\|977409_980109_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.1133e-141
CP030211.1\|AXD56270.1\|992573_992885_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP030211.1\|AXD56273.1\|994089_995139_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030211.1\|AXD56255.1\|975250_975985_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.32701e-138
CP030211.1\|AXD56265.1\|987762_988809_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030211.1\|AXD56269.1\|992026_992383_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP030211.1\|AXD56264.1\|986060_986354_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65

>CP030211.1|AXD56264.1|986060_986354_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP030211.1|AXD56263.1|985140_986058_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPVEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIEIPLPVALGDSGHRST
>CP030211.1|AXD56262.1|984436_985141_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQQKPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP030211.1|AXD56261.1|983711_984437_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP030211.1|AXD56260.1|982637_983702_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVELLRKKQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYAIYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP030211.1|AXD56259.1|982018_982621_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNRIRWANEYLSTSRGK
>CP030211.1|AXD56258.1|980466_982002_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHLLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQELASSYRKHKARKDVLALVE
>CP030211.1|AXD56257.1|977409_980109_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPNSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPQQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPILHILAPHWQEQAEESWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDAGEASYYSKRFGLVG
>CP030211.1|AXD56256.1|976072_977026_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP030211.1|AXD56255.1|975250_975985_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEINAQLETLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLATQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030211.1|AXD56265.1|987762_988809_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030211.1|AXD56266.1|989059_989968_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030211.1|AXD56267.1|989977_991417_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030211.1|AXD56268.1|991403_992009_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030211.1|AXD56269.1|992026_992383_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030211.1|AXD56270.1|992573_992885_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030211.1|AXD56271.1|992903_993614_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030211.1|AXD56272.1|993613_994093_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030211.1|AXD56273.1|994089_995139_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030211.1|AXD56274.1|995119_995881_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030211_1	1.1\|968980\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	968980-969011	32	CP030211.1	417366-417397	0	1.0

1. spacer 1.1|968980|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to position: 417366-417397, mismatch: 0, identity: 1.0

ccatgatcctgcttatcgataactatgattcc	CRISPR spacer
ccatgatcctgcttatcgataactatgattcc	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030211_1	1.17\|969833\|31\|CP030211\|CRT	969833-969863	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90793-90823	4	0.871
CP030211_1	1.17\|969833\|31\|CP030211\|CRT	969833-969863	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112082	4	0.871
CP030211_1	1.17\|969833\|31\|CP030211\|CRT	969833-969863	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225001	4	0.871
CP030211_1	1.16\|969833\|32\|CP030211\|CRISPRCasFinder	969833-969864	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
CP030211_1	1.16\|969833\|32\|CP030211\|CRISPRCasFinder	969833-969864	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
CP030211_1	1.16\|969833\|32\|CP030211\|CRISPRCasFinder	969833-969864	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
CP030211_1	1.17\|969833\|31\|CP030211\|CRT	969833-969863	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271401-271431	5	0.839
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP021915	Sagittula sp. P11 plasmid unnamed2, complete sequence	116484-116515	5	0.844
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP041350	Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence	279-310	5	0.844
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33598	6	0.806
CP030211_1	1.16\|969833\|32\|CP030211\|CRISPRCasFinder	969833-969864	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP014675	Kozakia baliensis strain DSM 14400 plasmid pKB14400_1, complete sequence	171734-171765	6	0.812
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	562790-562821	6	0.812
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	243956-243987	6	0.812
CP030211_1	1.9\|969468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969468-969499	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
CP030211_1	1.9\|969468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969468-969499	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
CP030211_1	1.9\|969468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969468-969499	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
CP030211_1	1.9\|969468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969468-969499	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
CP030211_1	1.9\|969468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969468-969499	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
CP030211_1	1.16\|969833\|32\|CP030211\|CRISPRCasFinder	969833-969864	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
CP030211_1	1.16\|969833\|32\|CP030211\|CRISPRCasFinder	969833-969864	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
CP030211_1	1.17\|969833\|31\|CP030211\|CRT	969833-969863	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052296-2052326	7	0.774
CP030211_1	1.17\|969833\|31\|CP030211\|CRT	969833-969863	31	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343728-343758	7	0.774
CP030211_2	2.1\|986468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	986468-986499	32	NC_010851	Streptomyces sp. FR1 plasmid pFRL1, complete sequence	16185-16216	7	0.781
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP010872	Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6003, complete sequence	9973-10004	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1129847-1129878	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1783651-1783682	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	2012965-2012996	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1726765-1726796	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1171924-1171955	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1042739-1042770	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1783787-1783818	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1726762-1726793	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	236953-236984	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	148007-148038	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1726763-1726794	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1108332-1108363	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1041836-1041867	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1074580-1074611	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1074569-1074600	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1783312-1783343	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1042731-1042762	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1042087-1042118	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1042722-1042753	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1783257-1783288	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	370077-370108	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	235444-235475	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	350195-350226	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1129950-1129981	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1129944-1129975	7	0.781
CP030211_2	2.19\|987566\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987566-987597	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1129927-1129958	7	0.781
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP041350	Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence	180897-180928	7	0.781
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	549969-550000	7	0.781
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	10007-10038	7	0.781
CP030211_1	1.3\|969102\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969102-969133	32	KR053200	Gordonia phage GTE6, complete genome	31264-31295	8	0.75
CP030211_1	1.9\|969468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969468-969499	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
CP030211_1	1.9\|969468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969468-969499	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
CP030211_1	1.10\|969529\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969529-969560	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	29431-29462	8	0.75
CP030211_1	1.10\|969529\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969529-969560	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	45666-45697	8	0.75
CP030211_1	1.12\|969651\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969651-969682	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
CP030211_1	1.16\|969833\|32\|CP030211\|CRISPRCasFinder	969833-969864	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
CP030211_1	1.17\|969833\|31\|CP030211\|CRT	969833-969863	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654432	8	0.742
CP030211_2	2.2\|986529\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	986529-986560	32	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	349743-349774	8	0.75
CP030211_2	2.7\|986834\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	986834-986865	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1435049-1435080	8	0.75
CP030211_2	2.15\|987322\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987322-987353	32	NZ_CP025584	Paracoccus jeotgali strain CBA4604 plasmid pCBA4604-01, complete sequence	23341-23372	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	324002-324033	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	315007-315038	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	285481-285512	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	122710-122741	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	412688-412719	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	MF150911	Ralstonia phage DU_RP_II, complete genome	2434-2465	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	MN996301	Ralstonia phage RpY1, complete genome	18901-18932	8	0.75
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NC_011273	Mycobacterium phage Myrna, complete genome	58326-58357	8	0.75
CP030211_1	1.11\|969590\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969590-969621	32	NZ_CP007649	Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence	19426-19457	9	0.719
CP030211_1	1.11\|969590\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969590-969621	32	KT932701	Enterococcus phage vB_EfaS_IME196, complete genome	8654-8685	9	0.719
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72061	9	0.71
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3414-3444	9	0.71
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232723-232753	9	0.71
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129920	9	0.71
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109942-109972	9	0.71
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148698-148728	9	0.71
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3414-3444	9	0.71
CP030211_2	2.1\|986468\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	986468-986499	32	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	1184106-1184137	9	0.719
CP030211_2	2.4\|986651\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	986651-986682	32	MH572384	Microviridae sp. isolate SD_SF_9, complete genome	645-676	9	0.719
CP030211_2	2.11\|987078\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987078-987109	32	NC_021529	Vibrio phage nt-1, complete genome	73436-73467	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP017782	Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence	45788-45819	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP031599	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence	348015-348046	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP012662	Defluviimonas alba strain cai42 plasmid pcai42A, complete sequence	87669-87700	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP043620	Rhodobacteraceae bacterium SH-1 plasmid p2, complete sequence	51395-51426	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP022197	Celeribacter ethanolicus strain TSPH2 plasmid unnamed, complete sequence	76797-76828	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP021117	Rhodobacteraceae bacterium strain G7 plasmid unnamed3, complete sequence	120398-120429	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_MF600313	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence	256671-256702	9	0.719
CP030211_2	2.14\|987261\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987261-987292	32	NZ_CP004396	Celeribacter indicus strain P73 plasmid pP73C, complete sequence	55431-55462	9	0.719
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	85269-85300	9	0.719
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	181739-181770	9	0.719
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP015040	Rhodovulum sp. P5 plasmid pRGUI01, complete sequence	68741-68772	9	0.719
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	942394-942425	9	0.719
CP030211_2	2.20\|987627\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987627-987658	32	MH588547	Caulobacter phage CcrSC, complete genome	48931-48962	9	0.719
CP030211_1	1.1\|968980\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	968980-969011	32	NC_004703	Bacteroides thetaiotaomicron VPI-5482 plasmid p5482, complete sequence	27836-27867	10	0.688
CP030211_1	1.1\|968980\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	968980-969011	32	NZ_AP019726	Bacteroides uniformis strain NBRC 113350 plasmid pBUN2, complete sequence	73430-73461	10	0.688
CP030211_1	1.11\|969590\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969590-969621	32	NC_041887	Rhodococcus phage Weasels2, complete genome	70286-70317	10	0.688
CP030211_1	1.12\|969651\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969651-969682	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
CP030211_1	1.13\|969712\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969712-969743	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
CP030211_1	1.13\|969712\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969712-969743	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
CP030211_1	1.13\|969712\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969712-969743	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
CP030211_1	1.13\|969712\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969712-969743	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
CP030211_1	1.14\|969773\|32\|CP030211\|PILER-CR	969773-969804	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
CP030211_1	1.15\|969773\|31\|CP030211\|CRISPRCasFinder,CRT	969773-969803	31	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78356-78386	10	0.677
CP030211_2	2.16\|987383\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	987383-987414	32	NZ_CP023066	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence	29139-29170	10	0.688
CP030211_2	2.21\|987688\|32\|CP030211\|CRISPRCasFinder,CRT	987688-987719	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP030211_2	2.21\|987688\|32\|CP030211\|CRISPRCasFinder,CRT	987688-987719	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
CP030211_1	1.4\|969163\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969163-969194	32	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	4151-4182	11	0.656
CP030211_1	1.4\|969163\|32\|CP030211\|PILER-CR,CRISPRCasFinder,CRT	969163-969194	32	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	777802-777833	11	0.656

1. spacer 1.17|969833|31|CP030211|CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

2. spacer 1.17|969833|31|CP030211|CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

3. spacer 1.17|969833|31|CP030211|CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

4. spacer 1.16|969833|32|CP030211|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

5. spacer 1.16|969833|32|CP030211|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

6. spacer 1.16|969833|32|CP030211|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

7. spacer 1.17|969833|31|CP030211|CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgc	Protospacer
 .**************.* ****** *****

8. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021915 (Sagittula sp. P11 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

accgaaaaagagctcgaagtgct-ggcggcaaa	CRISPR spacer
gccgaaaaagcgcccgaagtgctgggctgcaa-	Protospacer
.********* **.********* *** ****

9. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041350 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence) position: , mismatch: 5, identity: 0.844

tccacgtcgcccgccatcaggttc-gccagctc	CRISPR spacer
accacgttacccgccatcaggttcggcccgct-	Protospacer
 ******..*************** *** ***

10. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

agcacaatcattattagatgaactt--tcatca	CRISPR spacer
aacacaagaattattagatgaacttggtgat--	Protospacer
*.*****  ****************  * **

11. spacer 1.16|969833|32|CP030211|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

12. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014675 (Kozakia baliensis strain DSM 14400 plasmid pKB14400_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgttgcccgccatcaggttcggccccgc	Protospacer
 ******.***************** *  * *

13. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ttcagtgcgcccgccatcaggctcgccagcac	Protospacer
*.**   **************.******** *

14. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ttcagtgcgcccgccatcaggctcgccagcac	Protospacer
*.**   **************.******** *

15. spacer 1.9|969468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccgaaagcagataaaa	Protospacer
  ******* ********* ****** * .**

16. spacer 1.9|969468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

17. spacer 1.9|969468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

18. spacer 1.9|969468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

19. spacer 1.9|969468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

20. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

21. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

22. spacer 1.14|969773|32|CP030211|PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

agcacaatcattattagatgaactt--tcatcaa	CRISPR spacer
aacacaagaattattagatgaacttggtgatg--	Protospacer
*.*****  ****************  * **

23. spacer 1.16|969833|32|CP030211|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

24. spacer 1.16|969833|32|CP030211|CRISPRCasFinder matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

25. spacer 1.17|969833|31|CP030211|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggccc	Protospacer
 ** ******* ************ . ***

26. spacer 1.17|969833|31|CP030211|CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagt	Protospacer
********* ********** *.**  *  *

27. spacer 2.1|986468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_010851 (Streptomyces sp. FR1 plasmid pFRL1, complete sequence) position: , mismatch: 7, identity: 0.781

cgtctgcgcgtaacgctgcgcggcgtggatcg	CRISPR spacer
cttctgcgcgtacagctgcgcggcgacgctct	Protospacer
* **********  ***********  * **

28. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010872 (Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6003, complete sequence) position: , mismatch: 7, identity: 0.781

accgaaaaagagctcgaagtgct----ggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctaggcgt----	Protospacer
*****.*********** *****    ****

29. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

30. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

31. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

32. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

33. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

34. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

35. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

36. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

37. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

38. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

39. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

40. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

41. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

42. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

43. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

44. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

45. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

46. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

47. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

48. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

49. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

50. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

51. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

52. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

53. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

54. spacer 2.19|987566|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

55. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041350 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgttacccgccatcaggttcggccccgc	Protospacer
 ******..**************** *  * *

56. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgc	Protospacer
** * ..*************** * ***** *

57. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 7, identity: 0.781

tccacgt---cgcccgccatcaggttcgccagctc	CRISPR spacer
---aggtgcccgcccgcgatcaggtacgccagcgc	Protospacer
   * **   ******* ******* ******* *

58. spacer 1.3|969102|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to KR053200 (Gordonia phage GTE6, complete genome) position: , mismatch: 8, identity: 0.75

tgaagaacggccagcccgtcgaggtatcaatc	CRISPR spacer
tgaagatcgaccagcccgtcgagccggtgatc	Protospacer
****** **.************* .. ..***

59. spacer 1.9|969468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
ttgcaacagtttctttccgcatgcagctgctt	Protospacer
 ************** ***** ****.*

60. spacer 1.9|969468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
gttattcagtttctgaccgccagcagtttgtt	Protospacer
**    ******** ***** *********

61. spacer 1.10|969529|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 8, identity: 0.75

ctcccccgcctgataattacgccatctgcaat	CRISPR spacer
cttccccgcctgataattgcgccaaccatcac	Protospacer
**.***************.***** *... *.

62. spacer 1.10|969529|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ctcccccgcctgataattacgccatctgcaat	CRISPR spacer
cttccccgcctgataattgcgccaaccatcac	Protospacer
**.***************.***** *... *.

63. spacer 1.12|969651|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

atcatcgggattcattttgttgt--ccgggtggc	CRISPR spacer
gtcatcgtgatgcattttgttgtcccctaatg--	Protospacer
.****** *** ***********  ** ..**

64. spacer 1.16|969833|32|CP030211|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

65. spacer 1.17|969833|31|CP030211|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 8, identity: 0.742

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctggcggtcgcttcctcggcgc	Protospacer
 ** **************** *** . **

66. spacer 2.2|986529|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 8, identity: 0.75

tgctcactaacgagcgccagcaggtgacgctc	CRISPR spacer
ttcttcgagacgcgcgccagcaggtgaagctc	Protospacer
* **.   .*** ************** ****

67. spacer 2.7|986834|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.75

ccgattttcaagatgcgcgtaacggtcattat	CRISPR spacer
gcctgtttcaagatgggcgtaacggccattgc	Protospacer
 *   ********** *********.****..

68. spacer 2.15|987322|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025584 (Paracoccus jeotgali strain CBA4604 plasmid pCBA4604-01, complete sequence) position: , mismatch: 8, identity: 0.75

cgttggatgacctgctcctggatacgtggcaa	CRISPR spacer
cgttggatgatctgatcctggatcgggcccca	Protospacer
**********.*** ********  *   * *

69. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ccgaggtcgcccgctatcaggatcgccacggc	Protospacer
.* * *********.****** ******   *

70. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

71. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

72. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

73. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

74. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcggccgccatccggttgcgcgcctg	Protospacer
********* ******** ****   *. **

75. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcggccgccatccggttgcgcgcctg	Protospacer
********* ******** ****   *. **

76. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgtcgcctgccaccaggttcacgccgtc	Protospacer
 **********.****.*******.*    **

77. spacer 1.11|969590|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007649 (Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence) position: , mismatch: 9, identity: 0.719

tcgatatagcaacttttttaactattgcgtgg	CRISPR spacer
cgcctttagcatcttttttaacttttgcgaag	Protospacer
.   * ***** *********** ***** .*

78. spacer 1.11|969590|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to KT932701 (Enterococcus phage vB_EfaS_IME196, complete genome) position: , mismatch: 9, identity: 0.719

--tcgatatagcaacttttttaactattgcgtgg	CRISPR spacer
cgccagctt--caactttttcaactgttgcgtgg	Protospacer
  .*... *  *********.****.********

79. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

80. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

81. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

82. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

83. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

84. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

85. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

86. spacer 2.1|986468|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgtctgcgcgtaacgctgcgcggcgtggatcg	CRISPR spacer
gcgctgcgcggaatgctgcgcggcgtgctgcc	Protospacer
   ******* **.*************   *

87. spacer 2.4|986651|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to MH572384 (Microviridae sp. isolate SD_SF_9, complete genome) position: , mismatch: 9, identity: 0.719

ggtcgtcgaaaccacttgttatgaccggcatt	CRISPR spacer
catgttcgaaaccacttgttgttaccggcgcc	Protospacer
 .*  ***************.* ******...

88. spacer 2.11|987078|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_021529 (Vibrio phage nt-1, complete genome) position: , mismatch: 9, identity: 0.719

atttaaatgacgtgcaggaatactggattcac	CRISPR spacer
attgaaatgacttgcaggaatacgacctttgt	Protospacer
*** ******* *********** .  **...

89. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctgggcgt	Protospacer
*****.*********** *****  .**  .

90. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031599 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctgggcgt	Protospacer
*****.*********** *****  .**  .

91. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012662 (Defluviimonas alba strain cai42 plasmid pcai42A, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctgggcgt	Protospacer
*****.*********** *****  .**  .

92. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043620 (Rhodobacteraceae bacterium SH-1 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctgggcgt	Protospacer
*****.*********** *****  .**  .

93. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022197 (Celeribacter ethanolicus strain TSPH2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctgggcgt	Protospacer
*****.*********** *****  .**  .

94. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021117 (Rhodobacteraceae bacterium strain G7 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctgggcgt	Protospacer
*****.*********** *****  .**  .

95. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF600313 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
cactgaaaagggctcgaactgctggcggatag	Protospacer
  * .*****.******* *********  *.

96. spacer 2.14|987261|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004396 (Celeribacter indicus strain P73 plasmid pP73C, complete sequence) position: , mismatch: 9, identity: 0.719

accgaaaaagagctcgaagtgctggcggcaaa	CRISPR spacer
accgagaaagagctcgacgtgcttctgggcgt	Protospacer
*****.*********** *****  .**  .

97. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcgcgcgccatcagggtcattgacca	Protospacer
********** ********** **.....*.

98. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
agcccggcgcccgccatcaggctcgccccggc	Protospacer
  * ** **************.*****    *

99. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015040 (Rhodovulum sp. P5 plasmid pRGUI01, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
gccacctcgcccgcgatcaggttcatcgacgg	Protospacer
 **** ******** *********..*..*

100. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
acatcatcgcccgcgatgaggttcgccagaag	Protospacer
 *  *.******** ** ***********

101. spacer 2.20|987627|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
gcgatatcgcccgccaccagggtcgccagact	Protospacer
 * *..**********.**** ******* ..

102. spacer 1.1|968980|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_004703 (Bacteroides thetaiotaomicron VPI-5482 plasmid p5482, complete sequence) position: , mismatch: 10, identity: 0.688

ccatgatcctgcttatcgataactatgattcc	CRISPR spacer
gttcgatcgtgcttatcgacaactatgtggac	Protospacer
 . .**** **********.*******    *

103. spacer 1.1|968980|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019726 (Bacteroides uniformis strain NBRC 113350 plasmid pBUN2, complete sequence) position: , mismatch: 10, identity: 0.688

ccatgatcctgcttatcgataactatgattcc	CRISPR spacer
gttcgatcgtgcttatcgacaactatgtggac	Protospacer
 . .**** **********.*******    *

104. spacer 1.11|969590|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_041887 (Rhodococcus phage Weasels2, complete genome) position: , mismatch: 10, identity: 0.688

tcgatatagcaacttttttaactattgcgtgg	CRISPR spacer
atttaatagcaacttctttaaccattgcaaag	Protospacer
 .   **********.******.*****. .*

105. spacer 1.12|969651|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

atcatcgggattcattttgttgtccgggtggc	CRISPR spacer
attatcaggattcattttgttgtattcatcaa	Protospacer
**.***.**************** .  .* .

106. spacer 1.13|969712|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

107. spacer 1.13|969712|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

108. spacer 1.13|969712|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

109. spacer 1.13|969712|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

110. spacer 1.14|969773|32|CP030211|PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
tcttatggcattattagatgaattttcaacaa	Protospacer
  .   . **************.***** ***

111. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

112. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

113. spacer 1.14|969773|32|CP030211|PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

114. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

115. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

116. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

117. spacer 1.14|969773|32|CP030211|PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

118. spacer 1.15|969773|31|CP030211|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.677

agcacaatcattattagatgaactttcatca	CRISPR spacer
tcttatggcattattagatgaattttcaaca	Protospacer
  .   . **************.***** **

119. spacer 2.16|987383|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023066 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence) position: , mismatch: 10, identity: 0.688

gcaaaaccacgtggccgcgacggggtaaataa	CRISPR spacer
atttcgacccgtgaccgcgacggggtgaataa	Protospacer
..   . * ****.************.*****

120. spacer 2.21|987688|32|CP030211|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

121. spacer 2.21|987688|32|CP030211|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

122. spacer 1.4|969163|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 11, identity: 0.656

cgttgtcgttgctggacagaactccggggacg	CRISPR spacer
tcaggtcgaggctggacagaactccggatctc	Protospacer
.   ****  *****************.  .

123. spacer 1.4|969163|32|CP030211|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 11, identity: 0.656

cgttgtcgttgctggacagaactccggggacg	CRISPR spacer
tcaggtcgaggctggacagaactccggatctc	Protospacer
.   ****  *****************.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

89256 : 98639

Enterobacteria_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD55431.1\|89256_91590_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.3
AXD55432.1\|91604_91925_-	hypothetical protein	NA	NA	NA	NA
AXD55433.1\|91921_92149_-	hypothetical protein	NA	NA	NA	NA
AXD55434.1\|92145_92694_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.5e-29	64.0
AXD59701.1\|93028_93214_+	hypothetical protein	NA	NA	NA	NA
AXD55435.1\|93494_94232_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	5.8e-80	64.4
AXD55436.1\|94228_94474_+	hypothetical protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
AXD55437.1\|94490_95057_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.0e-55	62.7
AXD55438.1\|95020_95206_-	hypothetical protein	NA	NA	NA	NA
AXD55439.1\|95438_96548_-	hypothetical protein	NA	NA	NA	NA
AXD55440.1\|96550_97459_-	hypothetical protein	NA	NA	NA	NA
AXD55441.1\|97463_98639_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-209	91.8

DBSCAN-SWA_2

653322 : 693141

Salmonella_phage(52.27%)

integrase,head,terminase,tRNA,plate,capsid,portal,tail,lysis,holin

attL 647388:647408|attR 695448:695468

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
647388:647408	attL	NA	NA	NA	NA
AXD55948.1\|653322_654888_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-12	33.9
AXD55949.1\|654884_655532_-	PadR family transcriptional regulator	NA	NA	NA	NA
AXD55950.1\|655763_656531_+	siderophore-interacting protein	NA	NA	NA	NA
AXD55951.1\|656720_657764_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.1e-198	97.4
AXD59722.1\|657763_658351_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	4.6e-64	60.3
AXD55952.1\|658485_658749_+	hypothetical protein	A0A218M4I5	Erwinia_phage	7.4e-30	72.4
AXD55953.1\|658779_659289_+	hypothetical protein	Q6K1F8	Salmonella_virus	1.2e-81	90.5
AXD55954.1\|659296_659497_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.8e-31	98.5
AXD55955.1\|659460_659799_+	hypothetical protein	A0A218M4I7	Erwinia_phage	7.3e-54	94.6
AXD55956.1\|659863_660097_+	hypothetical protein	Q6K1F6	Salmonella_virus	4.3e-29	88.3
AXD55957.1\|660096_660321_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	6.5e-35	100.0
AXD55958.1\|660317_660839_+	hypothetical protein	Q6K1F4	Salmonella_virus	1.2e-92	100.0
AXD55959.1\|660961_663181_+	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	95.4
AXD59723.1\|663325_663514_+	Tum protein	A0A218M4I0	Erwinia_phage	2.8e-23	91.5
AXD55960.1\|663746_663956_+	hypothetical protein	Q6K1F0	Salmonella_virus	1.1e-31	94.2
AXD59724.1\|664089_664281_+	hypothetical protein	S4TRZ0	Salmonella_phage	1.8e-25	93.7
AXD55961.1\|664486_664714_+	hypothetical protein	NA	NA	NA	NA
AXD55962.1\|664744_665962_+	ATP-binding protein	NA	NA	NA	NA
AXD55963.1\|666013_667060_-\|portal	phage portal protein	S4TNX7	Salmonella_phage	4.4e-190	99.4
AXD55964.1\|667059_668829_-	oxidoreductase	S4TT96	Salmonella_phage	0.0e+00	98.1
AXD55965.1\|668994_669849_+\|capsid	capsid scaffolding protein	A0A0M3UL81	Salmonella_phage	9.9e-148	100.0
AXD55966.1\|669925_670993_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	1.2e-198	99.7
AXD55967.1\|670996_671746_+\|terminase	terminase	Q6K1I5	Salmonella_virus	2.6e-128	98.0
AXD55968.1\|671839_672346_+\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
AXD55969.1\|672345_672549_+\|tail	phage tail protein	S4TTA0	Salmonella_phage	4.4e-30	95.5
AXD55970.1\|672552_672849_+\|holin	holin	S4TP56	Salmonella_phage	4.4e-47	100.0
AXD55971.1\|672835_673333_+	lysozyme	S4TUB1	Salmonella_phage	1.2e-92	99.4
AXD55972.1\|673329_673743_+\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	9.9e-45	99.3
AXD55973.1\|673714_673888_+\|lysis	phage lysis protein	S4TNY4	Salmonella_phage	2.8e-25	98.2
AXD55974.1\|673850_674318_+\|tail	phage tail protein	S4TTA5	Salmonella_phage	7.2e-84	99.4
AXD55975.1\|674310_674760_+	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	3.5e-72	98.7
AXD55976.1\|674828_675470_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.0e-113	99.1
AXD55977.1\|675466_675814_+\|plate	baseplate assembly protein	S4TRW8	Salmonella_phage	2.5e-57	100.0
AXD55978.1\|675820_676729_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	2.6e-162	100.0
AXD55979.1\|676721_677252_+\|tail	phage tail protein I	S4TTA8	Salmonella_phage	3.5e-103	100.0
AXD55980.1\|677262_679377_+\|tail	phage tail protein	Q6K1H2	Salmonella_virus	2.9e-233	76.1
AXD55981.1\|679389_679938_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	9.9e-101	100.0
AXD55982.1\|680072_681251_+\|tail	phage tail protein	S4TRX2	Salmonella_phage	1.4e-221	99.2
AXD55983.1\|681266_681785_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
AXD55984.1\|681847_682183_+\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
AXD55985.1\|682179_682335_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
AXD55986.1\|682327_684769_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	96.2
AXD55987.1\|684781_685267_+\|tail	phage tail protein	Q6K1G5	Salmonella_virus	1.5e-84	98.8
AXD55988.1\|685263_686433_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	5.6e-210	97.4
AXD55989.1\|686499_686718_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
AXD55990.1\|687076_687583_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
AXD55991.1\|687706_689689_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AXD55992.1\|689703_691449_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AXD55993.1\|691684_691900_-	30S ribosomal protein S21	NA	NA	NA	NA
AXD55994.1\|692127_693141_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
695448:695468	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1680224 : 1689395

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD56891.1\|1680224_1681172_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
AXD56892.1\|1681155_1681887_+	ABC transporter permease	NA	NA	NA	NA
AXD56893.1\|1681867_1681975_-	hypothetical protein	NA	NA	NA	NA
AXD56894.1\|1682034_1682766_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXD56895.1\|1682988_1684674_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXD56896.1\|1684670_1685390_+	DNA-binding response regulator	NA	NA	NA	NA
AXD56897.1\|1685436_1685904_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXD56898.1\|1685960_1686491_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXD56899.1\|1686662_1687121_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXD56900.1\|1687361_1689395_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1757704 : 1768211

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD56955.1\|1757704_1759108_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
AXD56956.1\|1759285_1760179_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXD56957.1\|1760555_1761641_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AXD56958.1\|1761640_1762540_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AXD59762.1\|1762587_1763466_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
AXD56959.1\|1763466_1764018_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
AXD56960.1\|1764023_1764998_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXD56961.1\|1765013_1765787_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXD56962.1\|1765791_1766871_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
AXD56963.1\|1766897_1768211_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_5

1856227 : 1863652

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD57045.1\|1856227_1856752_-	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7
AXD57046.1\|1857398_1857689_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.0e-08	50.9
AXD57047.1\|1858060_1858858_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
AXD57048.1\|1859338_1859500_+	hypothetical protein	NA	NA	NA	NA
AXD57049.1\|1859626_1860046_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXD57050.1\|1860048_1861317_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
AXD57051.1\|1861771_1861984_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXD59767.1\|1861994_1862183_+	cold-shock protein	NA	NA	NA	NA
AXD57052.1\|1862440_1863652_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.5e-109	56.5

DBSCAN-SWA_6

1971805 : 2027399

Edwardsiella_phage(18.37%)

integrase,head,terminase,transposase,protease,tail,lysis,holin

attL 2004894:2004909|attR 2026608:2026623

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD57168.1\|1971805_1972885_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.9e-101	52.5
AXD57169.1\|1972859_1973138_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
AXD59771.1\|1973198_1973435_-	hypothetical protein	NA	NA	NA	NA
AXD57170.1\|1973725_1973911_-	DUF1187 family protein	NA	NA	NA	NA
AXD57171.1\|1973957_1974788_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.5e-104	71.6
AXD57172.1\|1974780_1977471_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	3.0e-118	73.2
AXD57173.1\|1977611_1977947_-	hypothetical protein	NA	NA	NA	NA
AXD57174.1\|1978022_1978229_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
AXD57175.1\|1978232_1978508_-	hypothetical protein	NA	NA	NA	NA
AXD57176.1\|1978856_1979123_-	hypothetical protein	NA	NA	NA	NA
AXD57177.1\|1979538_1979964_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	1.2e-13	56.3
AXD57178.1\|1980060_1980315_+	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
AXD57179.1\|1980301_1980796_+	hypothetical protein	NA	NA	NA	NA
AXD57180.1\|1980839_1981841_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.4e-123	68.1
AXD57181.1\|1981833_1982295_+	replication protein	A0A0U2JGJ0	Escherichia_phage	5.1e-66	74.2
AXD57182.1\|1982309_1982705_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.7e-17	38.1
AXD57183.1\|1982701_1982974_+	hypothetical protein	NA	NA	NA	NA
AXD57184.1\|1983177_1983333_+	type I toxin-antitoxin system hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-14	84.3
AXD57185.1\|1983584_1983833_+	hypothetical protein	NA	NA	NA	NA
AXD57186.1\|1983896_1984496_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	3.6e-96	82.9
AXD57187.1\|1984492_1984720_+	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
AXD57188.1\|1984849_1985539_+	antiterminator	I6PDF8	Cronobacter_phage	2.1e-60	54.9
AXD59772.1\|1985635_1986160_+	hypothetical protein	NA	NA	NA	NA
AXD57189.1\|1986533_1986983_-	lipoprotein	NA	NA	NA	NA
AXD57190.1\|1987343_1988030_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
AXD59773.1\|1988305_1988635_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AXD57191.1\|1988618_1989071_+	lysozyme	A0A0M4R365	Salmonella_phage	3.0e-79	98.0
AXD59774.1\|1989088_1989553_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.7e-59	82.9
AXD57192.1\|1989778_1989961_+	DUF826 domain-containing protein	NA	NA	NA	NA
AXD57193.1\|1990031_1990784_+	hypothetical protein	G8C7P2	Escherichia_phage	5.3e-12	73.3
AXD57194.1\|1990749_1992171_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	8.9e-186	67.8
AXD57195.1\|1992170_1993691_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	5.3e-104	43.7
AXD57196.1\|1993731_1994421_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	4.5e-58	49.6
AXD57197.1\|1994417_1995764_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	2.7e-67	37.0
AXD57198.1\|1995765_1996248_+	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	1.1e-26	48.8
AXD57199.1\|1996247_1997276_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
AXD57200.1\|1997279_1997627_+	hypothetical protein	H9C0V9	Aeromonas_phage	3.0e-10	40.2
AXD57201.1\|1997633_1998089_+	DUF4054 domain-containing protein	A0A068CGG9	Acinetobacter_phage	2.4e-15	40.8
AXD57202.1\|1998082_1998667_+	hypothetical protein	H9C0W2	Aeromonas_phage	3.2e-17	30.6
AXD57203.1\|1998663_1999029_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	8.8e-21	39.7
AXD57204.1\|1999013_1999559_+	hypothetical protein	NA	NA	NA	NA
AXD57205.1\|1999539_2001024_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	4.0e-96	41.0
AXD57206.1\|2001024_2001471_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
AXD57207.1\|2001470_2001875_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
AXD57208.1\|2001916_2002099_+	transcription elongation factor GreA	NA	NA	NA	NA
AXD57209.1\|2002082_2004254_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
AXD57210.1\|2004250_2004961_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	5.0e-28	34.6
2004894:2004909	attL	NA	NA	NA	NA
AXD57211.1\|2004960_2005263_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	2.4e-24	50.5
AXD57212.1\|2005259_2006129_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.1e-32	32.7
AXD57213.1\|2006109_2006820_+	oxidoreductase	A0A077KAY0	Edwardsiella_phage	3.8e-28	33.8
AXD57214.1\|2006832_2007189_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	5.5e-20	49.1
AXD57215.1\|2007185_2008427_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	3.5e-101	49.6
AXD57216.1\|2008428_2009031_+	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	5.9e-30	43.2
AXD57217.1\|2009020_2010475_+\|tail	tail fiber protein	E5G6P0	Salmonella_phage	1.5e-39	68.2
AXD57218.1\|2010474_2011050_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.5e-96	91.0
AXD57219.1\|2011245_2011968_-	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AXD57220.1\|2012447_2013248_-	hypothetical protein	NA	NA	NA	NA
AXD59775.1\|2014192_2015047_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.5e-74	51.9
AXD59776.1\|2015106_2015601_-	RecE	A0A0U2I1R6	Escherichia_phage	4.8e-22	70.3
AXD57221.1\|2015790_2016021_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
AXD57222.1\|2016074_2016608_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
AXD57223.1\|2016864_2017032_-	lytic enzyme	NA	NA	NA	NA
AXD57224.1\|2017096_2017285_-	hypothetical protein	NA	NA	NA	NA
AXD57225.1\|2017339_2017831_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.9e-43	56.2
AXD57226.1\|2020532_2020733_-	phage virulence factor	NA	NA	NA	NA
AXD57227.1\|2020923_2021040_-\|tail	phage tail protein	NA	NA	NA	NA
AXD57228.1\|2021301_2021427_+	arsenic transporter	NA	NA	NA	NA
AXD57229.1\|2021555_2021822_+	hypothetical protein	NA	NA	NA	NA
AXD57230.1\|2022574_2023189_-	disulfide bond formation protein B	NA	NA	NA	NA
AXD57231.1\|2023198_2023357_-	hypothetical protein	NA	NA	NA	NA
AXD57232.1\|2023489_2024404_-	protein PagO	NA	NA	NA	NA
AXD59777.1\|2025021_2025222_+	hypothetical protein	NA	NA	NA	NA
AXD57233.1\|2025698_2026067_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	7.0e-18	38.9
AXD57234.1\|2026190_2027399_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.3e-46	48.7
2026608:2026623	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2912010 : 2919323

Ralstonia_phage(16.67%)

integrase,protease

attL 2906549:2906563|attR 2918059:2918073

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2906549:2906563	attL	NA	NA	NA	NA
AXD58087.1\|2912010_2912388_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
AXD58088.1\|2912549_2912747_+	hypothetical protein	NA	NA	NA	NA
AXD58089.1\|2912959_2915236_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AXD58090.1\|2915266_2915587_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AXD58091.1\|2915910_2916132_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AXD58092.1\|2916086_2916281_-	hypothetical protein	NA	NA	NA	NA
AXD58093.1\|2916261_2918208_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
2918059:2918073	attR	NA	NA	NA	NA
AXD58094.1\|2918204_2919323_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_8

4301708 : 4346485

Burkholderia_phage(40.91%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD59329.1\|4301708_4302707_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AXD59330.1\|4302794_4304105_-	conjugal transfer protein	NA	NA	NA	NA
AXD59331.1\|4304351_4304867_+	transcriptional regulator Zur	NA	NA	NA	NA
AXD59332.1\|4304965_4305175_-	CsbD family protein	NA	NA	NA	NA
AXD59870.1\|4305196_4305310_-	hypothetical protein	NA	NA	NA	NA
AXD59333.1\|4305306_4306632_-	MATE family efflux transporter	NA	NA	NA	NA
AXD59334.1\|4306810_4307419_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AXD59335.1\|4307527_4307896_-	diacylglycerol kinase	NA	NA	NA	NA
AXD59336.1\|4308066_4310487_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AXD59337.1\|4310585_4311458_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AXD59338.1\|4311471_4311969_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AXD59339.1\|4312149_4313067_-	maltose operon protein MalM	NA	NA	NA	NA
AXD59340.1\|4313230_4314589_-	maltoporin	NA	NA	NA	NA
AXD59341.1\|4314677_4315787_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AXD59342.1\|4316148_4317339_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
AXD59343.1\|4317470_4319015_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AXD59344.1\|4319029_4319920_+	maltose ABC transporter permease	NA	NA	NA	NA
AXD59345.1\|4320085_4320496_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AXD59346.1\|4320638_4322735_-	YjbH domain-containing protein	NA	NA	NA	NA
AXD59347.1\|4322734_4323472_-	hypothetical protein	NA	NA	NA	NA
AXD59348.1\|4323468_4324107_-	YjbF family lipoprotein	NA	NA	NA	NA
AXD59349.1\|4324170_4324413_-	outer membrane protein	NA	NA	NA	NA
AXD59350.1\|4324856_4326506_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AXD59351.1\|4326850_4328200_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AXD59352.1\|4328330_4328678_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AXD59353.1\|4329253_4329541_+	hypothetical protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
AXD59354.1\|4329543_4330149_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	6.5e-61	60.4
AXD59355.1\|4330161_4330476_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AXD59356.1\|4330635_4331091_+	hypothetical protein	NA	NA	NA	NA
AXD59357.1\|4331087_4331285_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AXD59358.1\|4331274_4332702_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AXD59359.1\|4332701_4333226_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AXD59360.1\|4333277_4333595_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AXD59361.1\|4333554_4333683_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AXD59362.1\|4333779_4336134_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.5e-68	31.2
AXD59363.1\|4336133_4337087_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AXD59364.1\|4337086_4337296_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AXD59365.1\|4337283_4338327_+	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AXD59366.1\|4338336_4339059_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AXD59367.1\|4339386_4339749_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AXD59368.1\|4339745_4340675_+	glycosyltransferase	S5FKN0	Shigella_phage	1.4e-150	84.1
AXD59369.1\|4340674_4342222_+	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
AXD59370.1\|4342385_4342745_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AXD59371.1\|4342735_4343851_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	4.1e-101	52.0
AXD59372.1\|4343843_4344476_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.9e-23	55.6
AXD59373.1\|4344478_4345960_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
AXD59374.1\|4345969_4346485_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030211

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection