CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030238	Salmonella enterica strain SA20055162 chromosome, complete genome	1 crisprs	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DEDDh,DinG	0	8	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030238_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030238_1

899022-899904

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030238_1

>merge|CP030238|1|899022-899904|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTACAGGCCAAAACGATTGAAGGGGTTAACGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGACCTGATAAGAGTCGGCCTGGACGTTTACCGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGCTGCGTGATTGGGAGTGGGCGTGCCTGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCTTCTCTTCAGCCTCGATTAGCGCCAGTCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCAGCCACTTGGCATTAACTTGCTCTGCATCACGAGTTCCCCGCGCCAGCGGGGATAAACCGTCGCTGGCCCCGTTGTACAGACCGGTGACTCCGAGTTCCCCGCGCCAGCGGGGATAAACCGATAATCAACCTCGTTTTCTAGATATTTTGACCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCCTTAACATTACCCTCGGCGATAGCCTGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTCGCTCACTCAGTTCGGTACGCTTGGTATTGAGTTCCCCGCGCCAGCGGGGATAAACCGCTTGGCTTCGCTCCCCGCAAAGGCGCGCCAACGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCGCGGACCATTTCACCGTTAAAAATCATTCGAGTTCCCCGCGCCAGCGGGGATAAACCGAATATATCCCCGCCAGTCTCAATTGGTGCTGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGCAGGTACTAAAAACCGTTATTACGTTGGCGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGATCTGTCCGGTATGGTTATTGTCTGCGGATAGAGTTCCCCGCGCCAGCGGGGATAAACGT

>CP030238|1|1|899022-899904|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGGCCAAAACGATTGAAGGGGTTAACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGACCTGATAAGAGTCGGCCTGGACGTTTACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCTGCGTGATTGGGAGTGGGCGTGCCTGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTCTCTTCAGCCTCGATTAGCGCCAGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCACTTGGCATTAACTTGCTCTGCATCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCTGGCCCCGTTGTACAGACCGGTGACTCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAATCAACCTCGTTTTCTAGATATTTTGACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTTAACATTACCCTCGGCGATAGCCTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTCGCTCACTCAGTTCGGTACGCTTGGTATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGGCTTCGCTCCCCGCAAAGGCGCGCCAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCGGACCATTTCACCGTTAAAAATCATTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATCCCCGCCAGTCTCAATTGGTGCTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGTACTAAAAACCGTTATTACGTTGGCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATCTGTCCGGTATGGTTATTGTCTGCGGATA
GAGTTCCCCGCGCCAGCGGGGATAAACGT

>CP030238|1|1|899022-899904|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGGCCAAAACGATTGAAGGGGTTAACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGACCTGATAAGAGTCGGCCTGGACGTTTACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCTGCGTGATTGGGAGTGGGCGTGCCTGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTCTCTTCAGCCTCGATTAGCGCCAGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCACTTGGCATTAACTTGCTCTGCATCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCTGGCCCCGTTGTACAGACCGGTGACTCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAATCAACCTCGTTTTCTAGATATTTTGACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTTAACATTACCCTCGGCGATAGCCTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTCGCTCACTCAGTTCGGTACGCTTGGTATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGGCTTCGCTCCCCGCAAAGGCGCGCCAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCGGACCATTTCACCGTTAAAAATCATTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATCCCCGCCAGTCTCAATTGGTGCTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGTACTAAAAACCGTTATTACGTTGGCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATCTGTCCGGTATGGTTATTGTCTGCGGATA
GAGTTCCCCGCGCCAGCGGGGATAAACGT

>CP030238|1|1|899022-899904|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGGCCAAAACGATTGAAGGGGTTAACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGACCTGATAAGAGTCGGCCTGGACGTTTACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCTGCGTGATTGGGAGTGGGCGTGCCTGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTCTCTTCAGCCTCGATTAGCGCCAGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCACTTGGCATTAACTTGCTCTGCATCAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCTGGCCCCGTTGTACAGACCGGTGACTCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAATCAACCTCGTTTTCTAGATATTTTGACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTTAACATTACCCTCGGCGATAGCCTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTCGCTCACTCAGTTCGGTACGCTTGGTATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGGCTTCGCTCCCCGCAAAGGCGCGCCAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCGGACCATTTCACCGTTAAAAATCATTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATCCCCGCCAGTCTCAATTGGTGCTGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGTACTAAAAACCGTTATTACGTTGGCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATCTGTCCGGTATGGTTATTGTCTGCGGATA
GAGTTCCCCGCGCCAGCGGGGATAAACGT

Protein	Signature genes	Signature genes Name	Protein_function
CP030238.1\|AXE02517.1\|896293_897019_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP030238.1\|AXE02528.1\|905770_906250_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030238.1\|AXE02513.1\|891896_892196_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP030238.1\|AXE02512.1\|889028_891725_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030238.1\|AXE02521.1\|899918_900965_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030238.1\|AXE02519.1\|897722_898640_+\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030238.1\|AXE02520.1\|898642_898936_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP030238.1\|AXE02524.1\|903560_904166_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030238.1\|AXE02525.1\|904183_904540_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030238.1\|AXE02518.1\|897018_897723_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP030238.1\|AXE02514.1\|893048_894584_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030238.1\|AXE02523.1\|902134_903574_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP030238.1\|AXE02526.1\|904730_905042_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030238.1\|AXE02522.1\|901216_902125_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030238.1\|AXE02515.1\|894600_895203_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP030238.1\|AXE02516.1\|895219_896284_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP030238.1\|AXE02511.1\|888692_888887_-\|hypothetical-protein	unknown	unknown	unknown
CP030238.1\|AXE02530.1\|907276_908038_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030238.1\|AXE02527.1\|905060_905771_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030238.1\|AXE02529.1\|906246_907296_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
CP030238.1\|AXE02517.1\|896293_897019_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.63762e-46
CP030238.1\|AXE02513.1\|891896_892196_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	7.44402e-10
CP030238.1\|AXE02512.1\|889028_891725_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.12924e-145
CP030238.1\|AXE02521.1\|899918_900965_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030238.1\|AXE02519.1\|897722_898640_+\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.47715e-155
CP030238.1\|AXE02520.1\|898642_898936_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	9.65861e-64
CP030238.1\|AXE02524.1\|903560_904166_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.61859e-143
CP030238.1\|AXE02525.1\|904183_904540_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.81134e-49
CP030238.1\|AXE02518.1\|897018_897723_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	9.33031e-77
CP030238.1\|AXE02514.1\|893048_894584_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.07322e-178
CP030238.1\|AXE02523.1\|902134_903574_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030238.1\|AXE02528.1\|905770_906250_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.77176e-104
CP030238.1\|AXE02522.1\|901216_902125_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030238.1\|AXE02515.1\|894600_895203_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.97602e-33
CP030238.1\|AXE02516.1\|895219_896284_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.5329e-118
CP030238.1\|AXE02526.1\|904730_905042_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP030238.1\|AXE02530.1\|907276_908038_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	6.02604e-147
CP030238.1\|AXE02527.1\|905060_905771_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	7.91858e-118
CP030238.1\|AXE02529.1\|906246_907296_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>CP030238.1|AXE02520.1|898642_898936_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSTKIREMIWQQISVLAEGGNVVMAWATNTESGFEFQTFGENRRIPVDLDGLRLVSFLPVVNQ
>CP030238.1|AXE02519.1|897722_898640_+|subtype-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGAVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGERAPSRRSVEQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATACLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRHPADPDREVRLACRDIFRSGKTLAKLIPLIEEVLAAGEIQPPSPPEDAQPIAIPLPVSLGDSGHRSS
>CP030238.1|AXE02518.1|897018_897723_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLKKWHSARPYASHQWLWQLFPEQDSRSFLFREEPRGGFFMLSATLPLAEHSLFLIETKPFNPQLTNGLVLDFQLRANPVVTRNGKRSDVMMDAKYQAKANGVPQEQWWERQQQAAQMWLEKQGLQHGFRLLEPEPDDFSQWAGAEYSEMQARCGCVQAYQQHRFVRKDQENAIAFSSVDFSGTLCITDAALFEQALFSGLGKSKAMGCGMLMVKRRR
>CP030238.1|AXE02517.1|896293_897019_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSAPVPTRSALLGLLAAALGIRRDEEERLNNFNQHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLAPDDVGTLISQREYHCDGYWHVALSATPDAPHTLMALRDALLTPHFPLYLGRKSCPLALPLAPRLMTGTLKEIFIEAAQALSAVELSGFTLSEGVCYWDDPDEASLIWQQKQHSNNQPVSRQRWQFGGYTRFSGPLPGRA
>CP030238.1|AXE02516.1|895219_896284_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAYMGGVERLRVSSQSLKRAWRVSETFEEAMDGFMGKRTRRIGVDYVYRPMIAAGVIAKTAKGAAEKIAAQFGKLKNDKNAPDEKNLEIEQIVHVSNHEINLIKQLVDTLIVDKREPSDEEVKLLRKTQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGYASALFYTYVCISRDLLVENLGGNEDLAKRAIAALTETALTVSPTGKQNSFASRAYATYALAEIGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRDSFDSVYGKCADDYRELNVQDSTGSLAELLAFVSQ
>CP030238.1|AXE02515.1|894600_895203_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAALCRILNPGAQNALLDWFATLSERYERKDDKRINGRAWRAELKRMAPPYGVMMCEGYGALRQSLLQHMPLQPLDEMALALFVSVAAHIKSNKEKISFAAQLGEKLNGSTPCVSALRFERLQKASEPETFCQLLIQAVKIRGTDGVNVLSLADSIFLWMEEWQQRENHQPESRNPFDRNRTRWANEYLSTSRGK
>CP030238.1|AXE02514.1|893048_894584_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTREKWLPVIFSSGEKKKISLLDLLDNQIQDIAYPRPDFQGAAWQMLIGILQCTVAPEDKEEWGDIWNEGIESEQWEKALKTISPALQFGEQKPSFLQSFDPLDSEYGSVAGLLVDAPGGNTLKLNKDHFVKRGSVEHICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLLVPQEEDNYPLWQKLWLNVLPQEDVPTVAQHPLIFPWLAPTKTSEKAGNIVTPENAHPLQAYWGMPRRIELDFIHTVAGICDLCGERHESLLLHMRSKNYGVQYDGWLHPFSPYRQVLKDPSAPWLALKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRKNMSLWCFAWDMDNAKARCWYQQHIPLVSVSHEEQFLDALNTVLVLASEALSLLRNALKSAKFAAPKEAKMDFSMVDIAFWQETEPAFRVLQDALAVDPLRQNALTHSAVRQWERELTHYLFHIFDRDALTDPDSPDDILLRQMTARQDFASSYRKHKARKDVLALVE
>CP030238.1|AXE02513.1|891896_892196_-|XRE-family-transcriptional-regulator
MATLKELMAQQSPKSQEPIAAKVAEMRQTIALSMLREELNLSQTEMAAAMGVKQPTIAKMEQADNDPRLSTLKRYVAALGGELSIDVKLPTGKRVAFTL
>CP030238.1|AXE02512.1|889028_891725_-|CRISPR-associated-helicase/endonuclease-Cas3
MMMENTGFLRYWGKTNKSIENINPPYHLLAYHCLDVAACGYHIIKNNIFDSRNTLHKCGITGTDAENWIIWLLASHDIGKFARGFQKYAEFPGSPLVPPISGISAFERHDSLGFYLWGKLLEAWREGHNEIIASVEPENRARFESALTIWMLISTGHHGIPPDTLKNSSALAFADEDIVAATHYLEALSRLFPFTLPQEWRVKTGRKCLKQQSWFFAGLTTLADWIGSDETQFPPLSEPMPLQDYWLLACEKARQAIGKIPPLSQHRHYQGHQALFPFIRTLTPLQERASTLDISAPGPQLVILEDVTGAGKTEAALILTHRLMSAGKSHGLYVGLPTMATANAMYQRLATAYHALFDDNSRPSLILAHGGREMSDAFRQSIWQPVGESAAEDYAHHDGNAASECHAWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLDAFNNGAGFAAADPNDNAGYPWLSHLSSSGLLEQPLATRPEVQRTVSVNWIQQRREALDIIYRVVAAGQCVCWIRNTVDDAREIYQQLLHEELIPEQDLLLFHSRFAFADRIAIEDKTLNWFGNSAPVSERRGKVLIATQVVEQSLDLDFDWMISDLAPIDLLIQRAGRLQRHIRDAHGQRQSALPDGRQPPILHILAPEWQEHAEEGWLGQELKGTGFVYADHACLWRTQALLRQYGEIRMPDNARDLVDGVYEQKIAAPADLQTFSDIAFGKVLSQRSVAAQNLLRHDLGYDRESSDFLWDKDREFSTRLGEESVDVYLARKGIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLTCFRKRHHRPSGHIVLVSEMGEASYYSKRFGLV
>CP030238.1|AXE02511.1|888692_888887_-|hypothetical-protein
MIRCSTVSLLANGKPNFQKTIIFGASSTFCLNCCHSKGLPPIICYTYNTVQILSCDQIWPVLIQ
>CP030238.1|AXE02521.1|899918_900965_-|aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTRMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYDIAANTNPGRNPSYPKGTGCCNDAEVFDKAGMSVLSVEATNWNLGKKDGYQQRMKNVSFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030238.1|AXE02522.1|901216_902125_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030238.1|AXE02523.1|902134_903574_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGSLASGSVNVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQNYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELVERGVAPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030238.1|AXE02524.1|903560_904166_+|adenylyl-sulfate-kinase
MARHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIILTAFISPHRAERQLVQERVGHDRFIEIYIDTPLAICEQRDPKGLYKKARAGELRHFTGIDAIYEAPESPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030238.1|AXE02525.1|904183_904540_+|DUF3561-family-protein
MPGMVKVTGFDMRNSHNITFTRSDAFIVDDDTTSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030238.1|AXE02526.1|904730_905042_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030238.1|AXE02527.1|905060_905771_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLRAVAEAPWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLHDCLTRALHEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030238.1|AXE02528.1|905770_906250_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRIFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030238.1|AXE02529.1|906246_907296_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALTFEQDAIAHETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030238.1|AXE02530.1|907276_908038_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030238_1	1.11\|899661\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899661-899692	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	71250-71281	6	0.812
CP030238_1	1.11\|899661\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899661-899692	32	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	27643-27674	6	0.812
CP030238_1	1.4\|899234\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899234-899265	32	NC_022982	Xylella phage Paz, complete genome	11178-11209	7	0.781
CP030238_1	1.1\|899051\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899051-899082	32	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	125100-125131	8	0.75
CP030238_1	1.14\|899844\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899844-899875	32	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	341660-341691	8	0.75
CP030238_1	1.2\|899112\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899112-899143	32	NC_015561	Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence	36763-36794	9	0.719
CP030238_1	1.3\|899173\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899173-899204	32	NC_001738	Streptomyces clavuligerus ATCC 27064 plasmid pSCL, complete sequence	8516-8547	9	0.719
CP030238_1	1.8\|899478\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899478-899509	32	NC_015059	Granulicella tundricola MP5ACTX9 plasmid pACIX904, complete sequence	36138-36169	9	0.719
CP030238_1	1.11\|899661\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899661-899692	32	NZ_CP012267	Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence	123138-123169	9	0.719
CP030238_1	1.11\|899661\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899661-899692	32	NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	28351-28382	9	0.719
CP030238_1	1.11\|899661\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899661-899692	32	NZ_CP012258	Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence	38792-38823	9	0.719
CP030238_1	1.11\|899661\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899661-899692	32	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	851415-851446	9	0.719
CP030238_1	1.9\|899539\|32\|CP030238\|PILER-CR,CRISPRCasFinder,CRT	899539-899570	32	NZ_CP022992	Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence	23913-23944	10	0.688

1. spacer 1.11|899661|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 6, identity: 0.812

cgcgcggaccatttcaccgttaaaaatcattc	CRISPR spacer
tgccaggaccatctcatcgttaaaaatcatgc	Protospacer
.**  *******.***.************* *

2. spacer 1.11|899661|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 6, identity: 0.812

cgcgcggaccatttcaccgttaaaaatcattc	CRISPR spacer
tgctcgcgtcatttccccgttaaaaatcattc	Protospacer
.** ** ..****** ****************

3. spacer 1.4|899234|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NC_022982 (Xylella phage Paz, complete genome) position: , mismatch: 7, identity: 0.781

cccttctcttcagcctcgattagcgccagtcg--	CRISPR spacer
cgagtctcttcagcctcgatcagcgcc--ttgac	Protospacer
*   ****************.******  *.*

4. spacer 1.1|899051|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 8, identity: 0.75

tacaggccaaaacgattgaaggggttaacggc	CRISPR spacer
agaacgccaaggcgattgaaggggttaaccgt	Protospacer
 . * *****..***************** *.

5. spacer 1.14|899844|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gatctgtccggtatggttattgtctgcggata	CRISPR spacer
catctggccggtctggttattgtcgccgtcga	Protospacer
 ***** ***** ***********  **   *

6. spacer 1.2|899112|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NC_015561 (Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence) position: , mismatch: 9, identity: 0.719

cgacctgataagagtcggcctggacgtttacc	CRISPR spacer
gatcctgacaagagtcggcccggacggtccgc	Protospacer
 . *****.***********.***** *.  *

7. spacer 1.3|899173|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NC_001738 (Streptomyces clavuligerus ATCC 27064 plasmid pSCL, complete sequence) position: , mismatch: 9, identity: 0.719

ttgctgcgtgattgggagtgggcgtgcctgaa	CRISPR spacer
cggctgcgtgatgcggagtgggcgtactgggc	Protospacer
. **********  ***********.*. *.

8. spacer 1.8|899478|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NC_015059 (Granulicella tundricola MP5ACTX9 plasmid pACIX904, complete sequence) position: , mismatch: 9, identity: 0.719

cgccttaacattaccctcggcgatagcctgcc	CRISPR spacer
agcagacggattacgctgggcgatagcctgcc	Protospacer
 **    . ***** ** **************

9. spacer 1.11|899661|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012267 (Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcggaccatttcaccgttaaaaatcattc	CRISPR spacer
gggccggaccatttcaccgttaactatcgcat	Protospacer
 *  *******************  ***.. .

10. spacer 1.11|899661|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012265 (Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcggaccatttcaccgttaaaaatcattc	CRISPR spacer
gggccggaccatttcaccgttaactatcgcat	Protospacer
 *  *******************  ***.. .

11. spacer 1.11|899661|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012258 (Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcggaccatttcaccgttaaaaatcattc	CRISPR spacer
gggccggaccatttcaccgttaactatcgcat	Protospacer
 *  *******************  ***.. .

12. spacer 1.11|899661|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcggaccatttcaccgttaaaaatcattc	CRISPR spacer
gaaccagatcattgcaccgttaaaaatcagtg	Protospacer
 .  *.**.**** *************** *

13. spacer 1.9|899539|32|CP030238|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022992 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence) position: , mismatch: 10, identity: 0.688

tttcgctcactcagttcggtacgcttggtatt	CRISPR spacer
tttcgcgtactcagttcggtacgtaaagacaa	Protospacer
****** .***************.  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1603880 : 1612437

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXE03138.1\|1603880_1604828_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	8.1e-10	27.8
AXE03139.1\|1604811_1605543_+	ABC transporter permease	NA	NA	NA	NA
AXE03140.1\|1605523_1605631_-	hypothetical protein	NA	NA	NA	NA
AXE03141.1\|1605690_1606422_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.1e-102	88.4
AXE03142.1\|1606644_1608330_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.8e-276	90.7
AXE03143.1\|1608326_1609046_+	DNA-binding response regulator	NA	NA	NA	NA
AXE03144.1\|1609092_1609563_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.0e-74	92.1
AXE03145.1\|1609704_1610163_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.2e-54	74.5
AXE03146.1\|1610403_1612437_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.7e-55	27.6

DBSCAN-SWA_2

1675258 : 1683502

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXE03193.1\|1675258_1676662_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.6e-20	31.9
AXE03194.1\|1676838_1677732_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXE03195.1\|1678109_1679195_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.7e-102	53.6
AXE03196.1\|1679194_1680094_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.0e-30	36.0
AXE03197.1\|1680140_1681010_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.2e-105	63.4
AXE03198.1\|1681156_1682392_+	flippase	NA	NA	NA	NA
AXE03199.1\|1682398_1683502_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	7.2e-135	61.0

DBSCAN-SWA_3

1752101 : 1762213

Salmonella_phage(44.44%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXE03250.1\|1752101_1754183_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.6e-196	52.4
AXE03251.1\|1754179_1754437_-	hypothetical protein	NA	NA	NA	NA
AXE03252.1\|1754530_1754692_-	hypothetical protein	A0A0U2QL97	Escherichia_phage	1.5e-09	58.8
AXE03253.1\|1755143_1755968_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	3.3e-140	89.4
AXE03254.1\|1755957_1756686_+	DUF4376 domain-containing protein	A0A0M4RTP2	Salmonella_phage	6.8e-49	72.7
AXE03255.1\|1756696_1757089_+\|tail	phage tail protein	A0A0A8J9K3	Ralstonia_phage	2.7e-15	42.6
AXE03256.1\|1757072_1757183_+	hypothetical protein	A0A0M4RTP2	Salmonella_phage	7.4e-08	78.1
AXE03257.1\|1757285_1757501_-	hypothetical protein	NA	NA	NA	NA
AXE03258.1\|1758075_1758300_+	hypothetical protein	S4TTF2	Salmonella_phage	1.1e-10	86.8
AXE03259.1\|1758269_1759070_-	hypothetical protein	NA	NA	NA	NA
AXE03260.1\|1760353_1760566_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	8.7e-21	70.0
AXE05855.1\|1760576_1760765_+	cold-shock protein	NA	NA	NA	NA
AXE03261.1\|1761034_1762213_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.1e-109	57.2

DBSCAN-SWA_4

1873673 : 1926823

Salmonella_phage(17.31%)

head,lysis,tail,integrase

attL 1910533:1910550|attR 1927149:1927166

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXE03374.1\|1873673_1873904_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AXE03375.1\|1874041_1874416_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AXE03376.1\|1874416_1875292_+	hypothetical protein	NA	NA	NA	NA
AXE03377.1\|1875308_1875659_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AXE03378.1\|1875719_1875839_+	hypothetical protein	NA	NA	NA	NA
AXE03379.1\|1876044_1877124_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-101	52.8
AXE03380.1\|1877098_1877377_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	5.3e-10	37.5
AXE05860.1\|1877449_1877674_-	hypothetical protein	NA	NA	NA	NA
AXE03381.1\|1877964_1878150_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	2.9e-12	59.6
AXE03382.1\|1878196_1879027_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
AXE03383.1\|1879019_1881710_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	2.4e-115	75.6
AXE03384.1\|1881850_1882186_-	hypothetical protein	NA	NA	NA	NA
AXE03385.1\|1882260_1882545_-	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
AXE03386.1\|1882926_1883082_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	4.7e-08	55.3
AXE03387.1\|1883392_1883818_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	9.3e-14	56.3
AXE03388.1\|1883914_1884169_+	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
AXE03389.1\|1884155_1884650_+	hypothetical protein	NA	NA	NA	NA
AXE03390.1\|1885073_1885310_-	hypothetical protein	NA	NA	NA	NA
AXE03391.1\|1885357_1885564_+	hypothetical protein	A0A088CD36	Shigella_phage	3.1e-15	58.0
AXE03392.1\|1885570_1886323_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	6.5e-103	76.1
AXE03393.1\|1886340_1886736_+	DNA-binding protein	A0A0U2QQN3	Escherichia_phage	9.8e-18	37.0
AXE03394.1\|1886732_1887005_+	hypothetical protein	NA	NA	NA	NA
AXE03395.1\|1887208_1887364_+	protein hokC	A0A0U2QV81	Escherichia_phage	3.4e-14	82.4
AXE03396.1\|1887614_1887863_+	hypothetical protein	NA	NA	NA	NA
AXE03397.1\|1887926_1888526_+	hypothetical protein	A0A0U2RT94	Escherichia_phage	4.5e-99	84.4
AXE03398.1\|1888700_1889009_+	hypothetical protein	K7P7Q1	Enterobacteria_phage	4.8e-36	79.3
AXE03399.1\|1889018_1889381_+	antitermination protein	Q777W5	Enterobacteria_phage	7.8e-54	80.0
AXE03400.1\|1889492_1891928_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
AXE05862.1\|1892675_1892978_+	alpha/beta hydrolase	NA	NA	NA	NA
AXE03401.1\|1892955_1893495_+	lysozyme	K7PLY1	Enterobacteria_phage	4.0e-78	74.1
AXE05861.1\|1893812_1894268_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	9.8e-54	76.5
AXE03402.1\|1894493_1894676_+	DUF826 domain-containing protein	NA	NA	NA	NA
AXE03403.1\|1894746_1895376_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	2.3e-109	99.0
AXE03404.1\|1895378_1896998_+	TerL protein	A0A0M5M1R6	Salmonella_phage	6.6e-262	81.4
AXE03405.1\|1896997_1898518_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	4.8e-105	43.7
AXE03406.1\|1898558_1899248_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	2.0e-58	49.6
AXE03407.1\|1899244_1900591_+	hypothetical protein	A0A219YCD3	Aeromonas_phage	4.2e-68	37.5
AXE03408.1\|1900592_1901075_+	hypothetical protein	A0A2R3UAX9	Myoviridae_environmental_samples	8.9e-29	52.4
AXE03409.1\|1901074_1902103_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	3.0e-82	49.1
AXE03410.1\|1902106_1902454_+	hypothetical protein	H9C0V9	Aeromonas_phage	1.9e-09	38.1
AXE03411.1\|1902460_1902916_+	DUF4054 domain-containing protein	K4HYQ8	Acinetobacter_phage	3.0e-10	35.4
AXE03412.1\|1902909_1903494_+	hypothetical protein	A0A2I7QJD5	Vibrio_phage	4.2e-17	32.0
AXE03413.1\|1903490_1903856_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	8.8e-21	39.7
AXE03414.1\|1903840_1904386_+	hypothetical protein	NA	NA	NA	NA
AXE03415.1\|1904366_1905851_+	hypothetical protein	A0A077KGV4	Edwardsiella_phage	4.4e-95	40.6
AXE03416.1\|1905851_1906298_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	39.7
AXE03417.1\|1906297_1906702_+	hypothetical protein	H9C0W7	Aeromonas_phage	4.5e-18	44.4
AXE03418.1\|1906746_1906926_+	transcription elongation factor GreA	NA	NA	NA	NA
AXE03419.1\|1906909_1909081_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	3.7e-50	67.1
AXE03420.1\|1909077_1909788_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	1.9e-27	34.6
AXE03421.1\|1909787_1910090_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
AXE03422.1\|1910086_1910956_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	4.1e-32	33.1
1910533:1910550	attL	NA	NA	NA	NA
AXE03423.1\|1910936_1911614_+	oxidoreductase	H9C0X6	Aeromonas_phage	1.4e-24	41.3
AXE03424.1\|1911626_1911983_+	hypothetical protein	NA	NA	NA	NA
AXE03425.1\|1911979_1913221_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	5.9e-101	49.6
AXE03426.1\|1913222_1913825_+	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	2.0e-30	43.8
AXE03427.1\|1913814_1915266_+\|tail	tail fiber protein	E5G6P0	Salmonella_phage	4.2e-50	78.5
AXE03428.1\|1915262_1916087_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	9.5e-140	89.1
AXE03429.1\|1916076_1916805_+	DUF4376 domain-containing protein	A0A0M4RTP2	Salmonella_phage	6.8e-49	72.7
AXE03430.1\|1916815_1917208_+\|tail	phage tail protein	I1TQ41	Pseudomonas_phage	2.0e-15	40.8
AXE03431.1\|1917191_1917305_+	hypothetical protein	A0A0M4RTP2	Salmonella_phage	4.7e-10	80.0
AXE03432.1\|1917405_1917651_-	hypothetical protein	NA	NA	NA	NA
AXE03433.1\|1919196_1919598_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	5.8e-26	47.7
AXE05863.1\|1920244_1920583_+	hypothetical protein	B6DZB9	Enterobacteria_phage	2.4e-20	48.4
AXE03434.1\|1920741_1921026_-	addiction module antidote protein, HigA family	A0A2L1IV52	Escherichia_phage	4.7e-22	54.5
AXE03435.1\|1921025_1921304_-	Killer protein	A0A2L1IV28	Escherichia_phage	1.8e-26	55.4
AXE03436.1\|1921887_1922571_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	3.1e-88	74.8
AXE05864.1\|1923001_1923826_+	hypothetical protein	Q8HAB4	Salmonella_phage	9.8e-36	49.4
AXE05865.1\|1924552_1926823_+	E3 ubiquitin--protein ligase	Q9MBL9	Phage_Gifsy-2	2.8e-24	49.6
1927149:1927166	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2672333 : 2679380

Salmonella_phage(62.5%)

integrase

attL 2668439:2668452|attR 2682756:2682769

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2668439:2668452	attL	NA	NA	NA	NA
AXE04121.1\|2672333_2673170_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	1.6e-118	75.9
AXE04122.1\|2673148_2673439_-	hypothetical protein	A0A1B5FPA6	Escherichia_phage	1.7e-27	76.3
AXE04123.1\|2673453_2673864_-	cons domain protein	A0A1C9IHZ5	Salmonella_phage	1.2e-71	97.7
AXE04124.1\|2674513_2675053_+	HD family hydrolase	A0A192Y8M4	Salmonella_phage	1.7e-97	99.4
AXE04125.1\|2675123_2675858_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	1.6e-69	97.7
AXE04126.1\|2675857_2676037_+	hypothetical protein	A0A2H4FQT4	Salmonella_phage	2.0e-26	96.6
AXE04127.1\|2676036_2676267_+	hypothetical protein	A0A220NQV0	Salmonella_phage	3.6e-36	93.3
AXE04128.1\|2678011_2678248_+	excisionase	NA	NA	NA	NA
AXE04129.1\|2678237_2679380_+\|integrase	integrase	O21929	Phage_21	2.8e-174	80.8
2682756:2682769	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3502684 : 3546760

Saccharomonospora_phage(12.5%)

transposase,plate,integrase

attL 3545587:3545602|attR 3549825:3549840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXE04853.1\|3502684_3503143_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	5.9e-14	31.5
AXE04854.1\|3503262_3504882_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
AXE05936.1\|3505183_3505903_+	adhesin/invasin protein PagN	NA	NA	NA	NA
AXE05937.1\|3506598_3507330_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
AXE04855.1\|3507393_3507861_+	ribonuclease HI	J9Q745	Salmonella_phage	8.0e-51	58.2
AXE04856.1\|3507857_3508580_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXE04857.1\|3508614_3509370_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AXE04858.1\|3509441_3510809_+	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
AXE04859.1\|3511261_3512059_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
AXE05938.1\|3512310_3512580_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXE04860.1\|3514532_3514817_-	type VI secretion system PAAR protein	NA	NA	NA	NA
AXE04861.1\|3515287_3516082_-	hypothetical protein	NA	NA	NA	NA
AXE04862.1\|3516597_3517095_-	hypothetical protein	NA	NA	NA	NA
AXE04863.1\|3517118_3517628_-	hypothetical protein	NA	NA	NA	NA
AXE04864.1\|3517624_3519085_-	hypothetical protein	A0A2P1CFS5	Microbacterium_phage	2.5e-05	51.0
AXE04865.1\|3519087_3519411_-	hypothetical protein	NA	NA	NA	NA
AXE04866.1\|3519477_3519900_-	hypothetical protein	NA	NA	NA	NA
AXE04867.1\|3519902_3522446_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.3e-21	24.9
AXE04868.1\|3522671_3523190_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AXE04869.1\|3523869_3524370_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AXE05939.1\|3524407_3525883_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AXE04870.1\|3525885_3526314_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AXE04871.1\|3526313_3528149_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXE05940.1\|3528115_3529162_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXE05941.1\|3529178_3530468_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AXE04872.1\|3530464_3530998_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AXE04873.1\|3531000_3532344_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AXE05942.1\|3532423_3533161_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AXE04874.1\|3533169_3535920_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	8.2e-87	31.6
AXE04875.1\|3535916_3536678_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
AXE04876.1\|3536682_3538086_+	type VI secretion system protein TssA	NA	NA	NA	NA
AXE04877.1\|3538102_3541627_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AXE04878.1\|3541637_3542987_+	hypothetical protein	NA	NA	NA	NA
AXE04879.1\|3543011_3543491_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AXE04880.1\|3543525_3544389_+	flagellar biosynthesis protein FlgJ	NA	NA	NA	NA
AXE04881.1\|3544391_3544730_+	hypothetical protein	NA	NA	NA	NA
AXE04882.1\|3545077_3545935_-	hypothetical protein	NA	NA	NA	NA
3545587:3545602	attL	NA	NA	NA	NA
AXE04883.1\|3546484_3546760_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	4.9e-08	41.0
AXE04883.1\|3546484_3546760_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	4.9e-08	41.0
3549825:3549840	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage