CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP024935	Paraburkholderia graminis strain PHS1 chromosome PHS1_B, complete sequence	0 crisprs	csa3,cas3,DinG,RT	0
CP024934	Paraburkholderia graminis strain PHS1 chromosome PHS1_A, complete sequence	0 crisprs	RT,WYL,cas3,PD-DExK,csa3,DinG,DEDDh	4
CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	0 crisprs	PD-DExK,RT	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

595740 : 604812

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF06925.1\|595740_597699_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.8e-145	50.3
AXF06926.1\|597968_599108_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	2.8e-25	41.0
AXF09692.1\|599133_601026_+	aminodeoxychorismate synthase, component I	S4VNU7	Pandoravirus	2.9e-51	34.6
AXF06927.1\|601072_601888_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	2.2e-35	29.2
AXF06928.1\|601921_602602_-	deoxynucleoside kinase	A0A0C5K8U0	Enterococcus_phage	4.3e-05	29.3
AXF06929.1\|602598_603132_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AXF06930.1\|603210_604812_-	polynucleotide adenylyltransferase PcnB	A0A172Q0J1	Acinetobacter_phage	2.6e-16	30.6

DBSCAN-SWA_2

758439 : 766580

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF07050.1\|758439_759351_+	GDP-mannose 4,6 dehydratase	E5ES47	Bathycoccus_sp._RCC1105_virus	7.8e-10	25.9
AXF07051.1\|759779_760841_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.6e-85	47.6
AXF07052.1\|760851_761745_+	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	1.6e-95	58.1
AXF07053.1\|761729_762281_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.6e-50	53.6
AXF07054.1\|762292_763219_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	9.0e-30	35.2
AXF07055.1\|763557_764976_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	4.6e-57	29.6
AXF07056.1\|764977_765799_+	ABC transporter permease	NA	NA	NA	NA
AXF07057.1\|765803_766580_+	sugar ABC transporter ATP-binding protein	M1I0C3	Paramecium_bursaria_Chlorella_virus	6.9e-07	28.2

DBSCAN-SWA_3

3193728 : 3207418

Methanothermobacter_phage(11.11%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF08930.1\|3193728_3194943_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	4.2e-43	34.0
AXF08931.1\|3195007_3196027_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AXF08932.1\|3196044_3196491_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	2.5e-46	62.3
AXF08933.1\|3196586_3198884_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	9.4e-169	41.6
AXF08934.1\|3198880_3199195_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A218MMY6	uncultured_virus	5.8e-13	44.6
AXF08935.1\|3199743_3199950_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.4e-23	81.8
AXF08936.1\|3200115_3200949_-	hypothetical protein	A0A0P0YN93	Yellowstone_lake_phycodnavirus	2.1e-30	35.6
AXF08937.1\|3201082_3201388_-	DUF1330 domain-containing protein	NA	NA	NA	NA
AXF08938.1\|3201624_3202881_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	1.2e-11	64.8
AXF08939.1\|3203220_3203790_+	pseudouridine synthase	NA	NA	NA	NA
AXF08940.1\|3204176_3204371_+	hypothetical protein	NA	NA	NA	NA
AXF08941.1\|3204515_3205046_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	2.0e-13	41.2
AXF08942.1\|3205312_3207418_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.0e-60	26.6

DBSCAN-SWA_4

3882780 : 3956250

Burkholderia_phage(78.57%)

capsid,tail,integrase,tRNA,terminase,portal,head,plate

attL 3878007:3878025|attR 3913729:3913747

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3878007:3878025	attL	NA	NA	NA	NA
AXF09522.1\|3882780_3883836_+	hypothetical protein	A0A0M4RT01	Citrobacter_phage	3.0e-05	24.3
AXF09523.1\|3884595_3885642_-\|portal	phage portal protein	E5FFI9	Burkholderia_phage	2.9e-186	93.3
AXF09524.1\|3885641_3887417_-\|terminase	terminase	E5FFI8	Burkholderia_phage	0.0e+00	94.3
AXF09525.1\|3887568_3888603_+	hypothetical protein	E5FFI7	Burkholderia_phage	6.5e-146	82.1
AXF09526.1\|3888645_3889662_+\|capsid	phage major capsid protein, P2 family	E5FFI6	Burkholderia_phage	2.5e-174	90.8
AXF09527.1\|3889676_3890363_+\|terminase	terminase	E5FFI5	Burkholderia_phage	2.3e-107	91.2
AXF09528.1\|3890465_3890957_+\|head	phage head protein	E5FFI4	Burkholderia_phage	5.2e-77	92.0
AXF09529.1\|3890956_3891163_+\|tail	phage tail protein	E5FFI3	Burkholderia_phage	7.6e-30	92.6
AXF09530.1\|3891178_3891520_+	hypothetical protein	E5FFI2	Burkholderia_phage	2.2e-50	97.3
AXF09531.1\|3891522_3891789_+	hypothetical protein	E5FFI1	Burkholderia_phage	1.6e-35	90.9
AXF09532.1\|3891785_3892592_+	peptidoglycan-binding protein	E5FFI0	Burkholderia_phage	2.6e-134	89.9
AXF09533.1\|3892588_3893041_+	hypothetical protein	E5FFH9	Burkholderia_phage	5.3e-52	76.7
AXF09534.1\|3893157_3893601_+\|tail	phage tail protein	E5FFH7	Burkholderia_phage	4.3e-70	92.5
AXF09535.1\|3893597_3894056_+	phage virion morphogenesis protein	E5FFH6	Burkholderia_phage	6.6e-74	94.1
AXF09536.1\|3894140_3894800_+\|plate	phage baseplate assembly protein V	E5FFH5	Burkholderia_phage	4.2e-82	79.4
AXF09537.1\|3894796_3895159_+\|plate	baseplate assembly protein	E5FFH4	Burkholderia_phage	4.1e-55	92.5
AXF09538.1\|3895155_3896070_+\|plate	baseplate assembly protein	E5FFH3	Burkholderia_phage	2.7e-135	82.8
AXF09539.1\|3896062_3896605_+\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	1.5e-88	90.6
AXF09540.1\|3896608_3898198_+\|tail	phage tail protein	E5E3Q7	Burkholderia_phage	1.6e-172	68.0
AXF09541.1\|3899132_3900305_+\|tail	phage tail protein	E5FFG9	Burkholderia_phage	4.9e-198	88.5
AXF09542.1\|3900321_3900831_+\|tail	phage major tail tube protein	E5FFG8	Burkholderia_phage	6.2e-81	87.0
AXF09543.1\|3900905_3901190_+\|tail	phage tail assembly protein	E5FFG7	Burkholderia_phage	1.8e-42	96.8
AXF09544.1\|3901222_3901342_+\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	9.7e-14	92.3
AXF09545.1\|3901338_3903876_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	0.0e+00	85.0
AXF09546.1\|3903890_3904316_+	oxidoreductase	E5FFG4	Burkholderia_phage	6.3e-63	86.2
AXF09547.1\|3904312_3905350_+	late control protein	E5FFG3	Burkholderia_phage	3.8e-178	88.7
AXF09548.1\|3905942_3906668_-	alpha/beta hydrolase	K4NZS4	Burkholderia_phage	1.9e-43	42.6
AXF09549.1\|3906722_3907157_-	transcriptional regulator	A4JWR8	Burkholderia_virus	3.1e-49	69.9
AXF09550.1\|3907241_3907478_+	hypothetical protein	E5E3P3	Burkholderia_phage	2.7e-23	77.3
AXF09551.1\|3907481_3907760_+	DNA-binding protein	E5E3P2	Burkholderia_phage	8.1e-35	78.0
AXF09552.1\|3907772_3908021_+	transcriptional regulator	K4PAZ0	Burkholderia_phage	4.1e-38	92.7
AXF09553.1\|3908103_3908322_+	hypothetical protein	NA	NA	NA	NA
AXF09554.1\|3908327_3908525_+	hypothetical protein	E5E3N9	Burkholderia_phage	1.5e-14	67.2
AXF09555.1\|3908572_3908773_+	hypothetical protein	K4NXL1	Burkholderia_phage	1.8e-07	52.4
AXF09556.1\|3908769_3909045_+	hypothetical protein	A4JWQ9	Burkholderia_virus	3.0e-21	72.5
AXF09557.1\|3909047_3911846_+	hypothetical protein	E5E3N5	Burkholderia_phage	0.0e+00	86.6
AXF09558.1\|3912644_3913721_+\|integrase	integrase	A0A1S5NNJ1	Burkholderia_phage	2.8e-176	82.4
AXF09559.1\|3914181_3915099_+	cytochrome c5 family protein	NA	NA	NA	NA
3913729:3913747	attR	NA	NA	NA	NA
AXF09560.1\|3915208_3915784_-	hypothetical protein	NA	NA	NA	NA
AXF09561.1\|3915942_3918048_-	ATP-dependent DNA helicase Rep	A7KV33	Bacillus_phage	7.2e-99	35.1
AXF09562.1\|3918142_3918400_-	hypothetical protein	NA	NA	NA	NA
AXF09563.1\|3918466_3919516_+	oxidoreductase	NA	NA	NA	NA
AXF09564.1\|3919723_3920074_+	hypothetical protein	NA	NA	NA	NA
AXF09565.1\|3920571_3921690_+	glycine cleavage system protein T	NA	NA	NA	NA
AXF09566.1\|3921761_3922142_+	glycine cleavage system protein H	NA	NA	NA	NA
AXF09567.1\|3922212_3925149_+	glycine dehydrogenase (aminomethyl-transferring)	M4QFZ1	Prochlorococcus_phage	1.1e-257	50.7
AXF09568.1\|3925264_3926395_+	alginate lyase	NA	NA	NA	NA
AXF09569.1\|3926424_3927813_+	L-serine ammonia-lyase	NA	NA	NA	NA
AXF09570.1\|3928013_3929732_+	thiamine pyrophosphate-binding protein	E5ERI2	Ostreococcus_lucimarinus_virus	4.3e-25	26.5
AXF09571.1\|3929814_3930963_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXF09572.1\|3931131_3935079_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
AXF09573.1\|3935861_3938111_-	primosomal protein N'	NA	NA	NA	NA
AXF09574.1\|3938586_3939687_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AXF09575.1\|3939895_3940693_+	ArtI protein	NA	NA	NA	NA
AXF09576.1\|3941623_3943354_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	6.4e-29	30.4
AXF09577.1\|3943605_3944031_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
AXF09578.1\|3944141_3945536_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
AXF09579.1\|3945661_3946546_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
AXF09580.1\|3946685_3948227_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
AXF09581.1\|3948285_3948825_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
AXF09582.1\|3948827_3949298_-	ATP synthase subunit B	NA	NA	NA	NA
AXF09583.1\|3949433_3949703_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA
AXF09584.1\|3949784_3950636_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
AXF09585.1\|3950793_3951348_-	ATP synthase subunit I	NA	NA	NA	NA
AXF09586.1\|3951833_3952721_-	chromosome partitioning protein ParB	I3NLC2	Bifidobacterium_phage	1.0e-14	32.4
AXF09587.1\|3952739_3953531_-	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	1.2e-22	31.3
AXF09588.1\|3953596_3954295_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
AXF09589.1\|3954291_3956250_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage