CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026121	Streptomyces sp. Go-475 chromosome, complete genome	7 crisprs	csa3,WYL,casR,DEDDh,cas4,Cas9_archaeal,cas3,DinG	6	3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026121_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026121_1

35791-35989

Orphan

Consensus_repeat	Method
GNCCGGTGGCGGACAACCNGGCGG	CRT

4 spacers

The CRISPR arrays of CP026121_1

>merge|CP026121|1|35791-35989|CRT
ATCCGGTGGCGGACAGCCGGGCGGTGCGCGGCACGGCGGTGGGCGACCAGTGGCGGACAACCAGGCGGCGCGGCACGGCGGTGGGCGACCGGTGGCGGACAACCAGGCGGCGCGCGGCACAAGCTGGCCCGGCGCGGTGGCGGACAACCAGGCGGTGCGCGGCACGGCGGTGGGCGACCGGTGGCGGACAACCGGGCGG

>CP026121|1|1|35791-35989|CRT
ATCCGGTGGCGGACAGCCGGGCGG	TGCGCGGCACGGCGGTGGGC
GACCAGTGGCGGACAACCAGGCGG	CGCGGCACGGCGGTGGGC
GACCGGTGGCGGACAACCAGGCGG	CGCGCGGCACAAGCTGGCCCG
GCGCGGTGGCGGACAACCAGGCGG	TGCGCGGCACGGCGGTGGGC
GACCGGTGGCGGACAACCGGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP026121.1\|AXE83390.1\|40779_41874_+\|putative-sensor-histidine-kinase-TcrY	unknown	unknown	gnl\|CDD\|223715
CP026121.1\|AXE83393.1\|43655_44603_+\|Helix-turn-helix-protein	unknown	unknown	gnl\|CDD\|375319
CP026121.1\|AXE83380.1\|29721_31707_+\|Protein-arginine-deiminase-(PAD)	unknown	unknown	gnl\|CDD\|367320
CP026121.1\|AXE83389.1\|40091_40787_+\|Transcriptional-regulatory-protein-TcrA	unknown	unknown	gnl\|CDD\|223816
CP026121.1\|AXE83384.1\|36493_37147_-\|Oxygen-regulatory-protein-NreC	unknown	unknown	gnl\|CDD\|225107
CP026121.1\|AXE83385.1\|37143_38103_-\|Oxygen-sensor-histidine-kinase-NreB	unknown	unknown	gnl\|CDD\|226951
CP026121.1\|AXE83378.1\|27464_28511_-\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|176192
CP026121.1\|AXE83379.1\|28700_29606_+\|NAD-dependent-protein-deacetylase	unknown	unknown	gnl\|CDD\|238700
CP026121.1\|AXE83373.1\|19853_21029_+\|Spore-photoproduct-lyase	unknown	unknown	gnl\|CDD\|188401
CP026121.1\|AXE83392.1\|42747_43473_-\|Pyrethroid-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP026121.1\|AXE83381.1\|31854_32418_-\|Extracellular-small-neutral-protease	unknown	unknown	gnl\|CDD\|280248
CP026121.1\|AXE83375.1\|22877_23957_-\|Carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|235533
CP026121.1\|AXE83382.1\|32549_34817_-\|bifunctional-preprotein-translocase-subunit-SecD/SecF	unknown	unknown	gnl\|CDD\|237276
CP026121.1\|AXE83391.1\|41968_42607_-\|Sugar-phosphatase-YfbT	unknown	unknown	gnl\|CDD\|319829
CP026121.1\|AXE83386.1\|38401_38728_+\|RNA-polymerase-binding-transcription-factor-DksA	unknown	unknown	gnl\|CDD\|274340
CP026121.1\|AXE83376.1\|24146_26753_-\|Phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235751
CP026121.1\|AXE83388.1\|39290_39995_+\|VanZ-like-family-protein	unknown	unknown	gnl\|CDD\|377417
CP026121.1\|AXE83387.1\|38780_39164_+\|RNA-polymerase-binding-transcription-factor-DksA	unknown	unknown	gnl\|CDD\|274340
CP026121.1\|AXE83377.1\|26919_27429_-\|Thermoresistant-gluconokinase	unknown	unknown	gnl\|CDD\|225804
CP026121.1\|AXE83374.1\|21773_22817_+\|von-Willebrand-factor-type-A-domain-protein	unknown	unknown	gnl\|CDD\|238119

Protein	Function_ID	Function_description	E-value
CP026121.1\|AXE83390.1\|40779_41874_+\|putative-sensor-histidine-kinase-TcrY	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.43071e-46
CP026121.1\|AXE83393.1\|43655_44603_+\|Helix-turn-helix-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	9.29521e-44
CP026121.1\|AXE83380.1\|29721_31707_+\|Protein-arginine-deiminase-(PAD)	gnl\|CDD\|367320	pfam03068, PAD, Protein-arginine deiminase (PAD). Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.	7.89227e-140
CP026121.1\|AXE83389.1\|40091_40787_+\|Transcriptional-regulatory-protein-TcrA	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.24941e-65
CP026121.1\|AXE83384.1\|36493_37147_-\|Oxygen-regulatory-protein-NreC	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.27989e-69
CP026121.1\|AXE83385.1\|37143_38103_-\|Oxygen-sensor-histidine-kinase-NreB	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.35023e-55
CP026121.1\|AXE83378.1\|27464_28511_-\|L-threonine-3-dehydrogenase	gnl\|CDD\|176192	cd08230, glucose_DH, Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	1.1176e-149
CP026121.1\|AXE83379.1\|28700_29606_+\|NAD-dependent-protein-deacetylase	gnl\|CDD\|238700	cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.	1.80279e-139
CP026121.1\|AXE83373.1\|19853_21029_+\|Spore-photoproduct-lyase	gnl\|CDD\|188401	TIGR03886, hypothetical_protein_SlinDRAFT_56750, spore photoproduct lyase family protein. This uncharacterized radical SAM domain protein occurs rarely and sporadically in species that include select Alphaproteobacteria and Actinobacteria, and in Deinococcus deserti VCD115. It is a distant but full-length homolog to the Bacillus subtilis spore photoproduct lyase (spl), which monomerizes thymine dimers created as DNA damage by uv radiation.	0
CP026121.1\|AXE83392.1\|42747_43473_-\|Pyrethroid-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.32771e-14
CP026121.1\|AXE83381.1\|31854_32418_-\|Extracellular-small-neutral-protease	gnl\|CDD\|280248	pfam02031, Peptidase_M7, Streptomyces extracellular neutral proteinase (M7) family.	5.69079e-28
CP026121.1\|AXE83375.1\|22877_23957_-\|Carnitinyl-CoA-dehydratase	gnl\|CDD\|235533	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.	0
CP026121.1\|AXE83382.1\|32549_34817_-\|bifunctional-preprotein-translocase-subunit-SecD/SecF	gnl\|CDD\|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	0
CP026121.1\|AXE83391.1\|41968_42607_-\|Sugar-phosphatase-YfbT	gnl\|CDD\|319829	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.21757e-40
CP026121.1\|AXE83386.1\|38401_38728_+\|RNA-polymerase-binding-transcription-factor-DksA	gnl\|CDD\|274340	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General].	5.65427e-16
CP026121.1\|AXE83376.1\|24146_26753_-\|Phosphoenolpyruvate-synthase	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	0
CP026121.1\|AXE83388.1\|39290_39995_+\|VanZ-like-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.01886e-13
CP026121.1\|AXE83387.1\|38780_39164_+\|RNA-polymerase-binding-transcription-factor-DksA	gnl\|CDD\|274340	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General].	2.72711e-12
CP026121.1\|AXE83377.1\|26919_27429_-\|Thermoresistant-gluconokinase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	1.98394e-73
CP026121.1\|AXE83374.1\|21773_22817_+\|von-Willebrand-factor-type-A-domain-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	1.23881e-09

>CP026121.1|AXE83382.1|32549_34817_-|bifunctional-preprotein-translocase-subunit-SecD/SecF
MIRSTRVRALLALTVLALSLFITFTVPVRLGLDLRGGTQIVLETRSTATAKAGPEATDRTLEVLRGRIDALGVAEPSLHRSGSNRIIVELPGVQDPKKAADVLGRTAQLTVHPVSALFDDAPDPLPKRPREYVLPDESGRLLRLEAAALTGQDVKKAEARFDQQTGAGWHVTVDFDASGHGKWSRLTGQAACHPAGDPARRIAIVLDEKIISSPQVDPSVTCENGITGGTTQITGSFTDREARELALLISGGALPVPVETVEQRTIGPTLGAEAITASAWAAVIGTALTALFIITVYRLMGALAVLALAAYGLISYAALAALGATLTLPGLAGFVLAIGMAVDANVLVFERAREEHANRRRSSARSALAAGFRKAFSAIADSNITTLIAAGLLFLLASGPVRGFGVTLGIGVLASMISALVVTRVLAEHAASRPWVRRRPHLTGLATAGRVRDRIERSQPRLTRRPRRLLALSAAALALAASGIAVRGIDIGVEFTGGRLIEYTTTRPVDPDHARAALADAGFPRAVVQSSGDDALTVRTEELTDTQADTVTRTLTALGGDTEKIRDELIGPSLGEELRRNALIALGVALAAQLLYLAARFRWLFGTAAVAALAHDVVILAGVFAWLGKPLDGVFLAALLTVIGYSVNDSVVVFDRIRELWRRDRTTPLPHIARQAILQTLPRTINTGMGAALILSALAVLGGDTLTDFALALLIGLAIGTYSSVFTATPLAIEINRHTTPTRHTTPTRTRRHRP
>CP026121.1|AXE83381.1|31854_32418_-|Extracellular-small-neutral-protease
MRVRTLTGGLAAACLMALSLTGGHAAAASPGPADTTLAARVLTYDAGGAAEFKSAVDRGAAIWNASVDAVELRPVTAGQRANIRILADNGWPRALPTTLGNGTVYIGRQAVDQGYDTIRISAHELGHILGLPDRKPGPCSSLMSGSSAGISCTNPYPNAAEKSEVEANFSRVLTGRTPAPRAELIVD
>CP026121.1|AXE83380.1|29721_31707_+|Protein-arginine-deiminase-(PAD)
MRSRTRIRPRLYPAGSVVLAIAAAGSVLAGPAGPAFAADAAGRADLRADVNRDGRVDVTGGSDKKGEDGWSVERGAVYLPNIDDDAKRCPVTGPGGSPLSDAKLAACNDGSDTQVNGTEDAADLARVRSVPLPGLPADAKGSLKLTTGGKHAHLFLKRAGKWVLVTSETRLTAAELRAGAEFGVEATDVVRDRAKWDGRAVVRLTVTSGGKSTSDAVTLRVAPLLTHHHLQDTQQVMVSEVQGQGPYSRLQQKFVAELAKEVEQAGVTAPLVKFTKYADPWAQDFVEPAYVSMTGPGGRRHVMRVMLRSAQPNRDAGRELFEKVRGRDIGVVQVTDRAEPDDWSLNSMGNLETIPPYAHNGRSFPAGRIIMGERKDSGARPSKVMRTMLASQGLQDPLLLDTSWLGVGHVDEFVQFLPADTPRGWRIGVADPEAGLGLLRDAQRDGHGKTKMFSVPGRSDSPAPKETIDQALASRHLVADNQMAARRIAANLEVLKRETGVTDAEIVRVPALYTRDSEALTAEGEEIPVPRLTRMGAGSDLVDSLGDRGQQKWLAENPAAPRAAAAPTVMTSAYVPGAVNGVLLARDRYLAPRQWGPVIGGKDIFTEAVTAAYQRVGLKVSYIDDWYTYHLGMGEVHCGTNTLRDATAAWWQRPAGGRNGA
>CP026121.1|AXE83379.1|28700_29606_+|NAD-dependent-protein-deacetylase
MRMRPTLSWTPAEDLPPGTTDLEPVADALGTGGVLVLSGAGLSTESGIPDYRGEGGSLSRHTPMTYQDFVGGAQARRRYWARSHLGWRTFGRAVPNAGHRAVAAFERHGLLAGVITQNVDGLHQAAGSEDVVELHGALDRVVCLSCGARSPRRELARRLEEANPGFEPVAAGINPDGDADLTDDQVAGFRVVPCTVCGGILKPDVVFFGETVPPQRVEHCRELVRAASSLLVLGSSLTVMSGLRFVRQAAQAGKPVLIVNRDPTRGDRHALTRVALPLGTALTTVADRLGIAVDRQAPPSP
>CP026121.1|AXE83378.1|27464_28511_-|L-threonine-3-dehydrogenase
MRAVTVRPGTKDSVEVREVPDPAPAAGELLVDGLAVGVCGTDKEIARGEYGSAPPGRERLVLGHESLGRVRQAPPGSGFSAGDLVAGVVRRPDPEPCGACARGEFDMCRNGRYTERGIKEIDGYGAEAWCVETEYAVRLEPQLERVGVLMEPTTVVAKAWEQVERVGGRSWFEPRRVLVTGAGPIGLLAALLGTQRGLDVHVLDRVTEGPKPGLVRDLGATYHAKDTEQVVTAVCPDVVIEATGANEPVLAALTGTAPYGVVCLTGVSPAGRRMTVDAGAINREIVLQNDAVVGSVNANLRHYRQAADALAEADLSWLERVITRRVPLERATEAFTPRPDDVKVVVDL
>CP026121.1|AXE83377.1|26919_27429_-|Thermoresistant-gluconokinase
MSQDSAPLVVVMGVSGSGKTTVGRSLAQSLGVPYAEGDDFHPEANVAKMRAGHPLDDEDRRPWLEEIARWLTGHADSGGVVTCSALKRRYRDRLASAAPRVFFLHLDGSPELIAARLTARRGHFMPPDLLRTQYADLEPLGEDETGAAVPIDGTPEETATLAHTAVTSP
>CP026121.1|AXE83376.1|24146_26753_-|Phosphoenolpyruvate-synthase
MLSSTYRYVLDLQEIDGTQLAVAGGKGAHLGELSRIEGVSVPGGFCVTTDAFRRTMAEAPSIDDDLDRLSRVDPDDVEAIRTLSARIRRTIEDTAVPADIAAAITGALAPFGEEAAFAVRSSATAEDLPTASFAGQQDTYLNVVGASAILRHVSRCWASLFTERAVTYRRRNGVDDRTVHMAVVVQRMVFPQAAGILFTADPVTGNRKVATVDAGYGLGEALVSGLVNPDVYKVRDGEVVAKTIAAKQRAVQALPGGGTQQVTIDAQRQEQPALTDAQVVRLVRLGRRIEAHFGRPQDIEWCLADDGFRIVQSRPITTLFPVPETGDQENHVYVSVGHQQMMTDPMKPLGLSMWQLTAMAPMHEAGGRLFVDVTRRLATPTGRAGLLDLVGRGDPLVRDALETVLERDDFVPSLPDRGPGGPPPGGAPAPIETDPALVTELVERSQASIAALRRDIRTKSGPALFDFLLEAFAEHKRVLGDRLSMQVIMAGMDATWWLNDKLLEWLGEKNAADTLTLSAPGNITSEMGLDLLDVADVIRPHPHVVAFLQGVEDDDFLDELPKLPGGTEARDAIEAYLDRYGMRCAGEIDITRPRWSERPGMLVPAILDNVRNFEPGAARRRFEQGLQEARKKERDVLSRLRALPDGDRKADEAKRMIDRVRTFIGYREYPKYDIVSRYFVYKQALLGEAERLVRAGVLAEREDVFYLTFQELHEAVRSQRVDDRLIRQRAEAFRSYQALTPPRVLTSDGEAVDGAYRRDDVPDGALVGLAVSAGTIEGRARVVLDMAQADLQAGDILVTAYTDPSWSPLFVGIAGLVTEVGGLMTHGAVIAREYGLPAVVGVHQATRLIRDGQRIRVHGSDGYVELLP
>CP026121.1|AXE83375.1|22877_23957_-|Carnitinyl-CoA-dehydratase
MSGAEEPVLFHTTGRAARITLNRPRALNALTHTMVRRIDEALTAWEHDPAVETVVITGAGERGLCAGGDIRAIHDDARDGDGSASRAFWRDEYRLNARIARYPKPYLAVMDGIVMGGGVGVSAHGGVRVVTERSRVAMPETGIGFVPDVGGTYLLARAPGELGTHLALTGAQAGAGDALLCGLADHYVPSASLGRLLDSLTELSASEALAGVARTAPQGVLAGRRDWIDTCYAADTVEEIVHRLLAHGDPEAKEAAETLLTRSPTALKVTLASLRRARALGSLDRVLEQEYRVSCAALGTPDLVEGIRAQVVDKDRRPRWSPKTLADVTDADVERFFTPPGRHDPGLAAPPGAAAEDAG
>CP026121.1|AXE83374.1|21773_22817_+|von-Willebrand-factor-type-A-domain-protein
MTTGSQNYINHVALVLDASSSMSHLSGKVVEVADQQIAYLARRSRELDQETRVTVYVFADKVECVIYDKDVLRMPSLKQLYRPGGMTALLAAALKSQRELAQTAQLYGDHSFLTFVLTDGQENASHRCEDSPARDPRELVKAVAEMMATQQDNWTLAVLVPDQMGKREAMQCGFPRDNIAIWDATSTQGLEEAGQVIRQATENFMVGRTQGIRGSRAVFSTGADAVNKDTIKAAGLTPVDPSKYQLIPVARDAGIREWVIECGHPYRTGAAFYQLSKSEKIQAQKQIAVLEKKTDRVYTGPAARTLLGLPNTVVRVKPDHNDDFTIFVQSTSVNRKLVSHTRLLLML
>CP026121.1|AXE83373.1|19853_21029_+|Spore-photoproduct-lyase
MHHPSGGPDDDSGALFGLDALTPAPAATDRHPSFRTSAEARRMLPVREIYAEPAAAASPRGRQITARFPDARVTMVDSHWRIPGLHGNQGNIDRWVRVKGETLVLGEKKTLTTRPNGRSADWIAPGPSNGCAMACAYCYVPRRKGYANPITVFTNIDRIIGHLARHVARQGPKPEPNQCDPEAWVYDIGENGDCSVDALICDNTADLVHAFRQWPTAKASFATKFVNPDLLALDPRGRTRIRFSLMPPDDARLLDVRTSPVAERIGAAADFLDAGYEVHLNLSPVVVRPGWQDAWAELLVHLDDVLPRRVKQQAAAEVIMLTHNQELHEVNLGWHPRAEEVLWRPELQQAKRSENGALNVRYRNRVKGDAVRALRALISRHAPWLRVRYAF
>CP026121.1|AXE83384.1|36493_37147_-|Oxygen-regulatory-protein-NreC
MTGNIRILLADDHALVRRGVRLILDQEPGLQVVAEAGDGAEAIEQVRGHEVDLAVLDIAMPRMTGLQAARELAGLKPGLRILILTMHDNEQYFFQALKAGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRARHGEEAPDQVLTPREEEVLKLVAEGHSSQAIADLLFISIKTVQRHRANLLHKLGLRDRLELTRYAIRVGLIDP
>CP026121.1|AXE83385.1|37143_38103_-|Oxygen-sensor-histidine-kinase-NreB
MSLFWRIFALNAVVLGTATALLLWAPVTVSVPVLLTEAIILLGGLAVMLVANAALLRWGLAPLDRLTRLMTTVDLLRPGQRLSAHGGGEVTELIRTFNSMLERLEQERAASSGRVLLAQEAERRRIAQELHDEVGQSMTAILLGLKRAADDAPGPLREDLREVQEITRDSLDEVRRLVRRLRPGVLDDLGLVSALTSLTEDFATHTGLQVTRRFAADLPALEPETELVLYRVAQESLTNAARHADAEGVVVTLGHSDTRVILAVTDDGCGIKAPREGAGILGMRERALLVGATLDITPAPRAGTQVKLTVPLPRKQPTS
>CP026121.1|AXE83386.1|38401_38728_+|RNA-polymerase-binding-transcription-factor-DksA
MSIDAPLTGPRPERMTAPDVRRRLEHARSTRLTQLRALDETGQSADDHLMSMQRGAIERVLQEIDDAFTRVEDGTYGTCLGCAEPVPAERLEILPYTPYCVACQRRAA
>CP026121.1|AXE83387.1|38780_39164_+|RNA-polymerase-binding-transcription-factor-DksA
MVNNPLIVDRAATRLSAEDLAALRENLTEQRLFRQEQLQQLAGAAPSRTDDVPRHDTASQVEVHVKLAAAARMVLADVEAALRRMDEGSYGACRLCGGPIARERLMIVPQARYCARCQHVPWTEARC
>CP026121.1|AXE83388.1|39290_39995_+|VanZ-like-family-protein
MDDNASLSASPRRTRGIVLPALAVLGVAGAVFALRRPLMMSAPMCVAGRWHGCLDTFNGVVLMTLVALPLAVLVVWALARRRRAAGVSWAWRISVAEVGMVHGTVPFLWLTMMPGAGAGSVPARVSLVPLRDLVTMGPLGIVGNLLVFAALGFFAPMRFAALASPPRILALGAGCSVLVETAQFVLRLDRVSSVDDVLVNTTGAVLAALASRRWWRATARTPSDRPRPSPAPAG
>CP026121.1|AXE83389.1|40091_40787_+|Transcriptional-regulatory-protein-TcrA
MRVLIVEDEPYLAEAVRDGLRLEAMAADIAGDGDSALELLSVNSYDLAVLDRDIPGPSGDEVARRIVASGSGIPILMLTAADRIDDKASGFGLGADDYLTKPFELRELVLRLRALDRRRAYARPPVREIAGLRLDPFRREVFRDGRYVALTRKQFAVLEVLVAAEGGVVSAEELLERAWDENADPFTNAVRITVSALRKRLGEPWIIVTVPGVGYRIDSGPGAIGPGSAHA
>CP026121.1|AXE83390.1|40779_41874_+|putative-sensor-histidine-kinase-TcrY
MRRRPGLSVRLKLTLSYAGFLAVAGALLLAVVWGFLLRYVPDNSQGLLGVSPNRYLLVRTFAPAAALAMLFLLVFGLVGGWILAGRMLAPLTQITDAARLAGNGSLSHRVRMKGRQDEFRELSDAFDSMLEQLESHVAEQQRFAANASHELRTPLAISRTLLDVAREDPTRDRAELLERLKAVNTRAIDLTEALLLLSRTDSGSFDRASVDLSLVAEEAAETLLHQAEQRGVRLDVTGGAARTSGSAELLLRMVTNLVQNAVVHNLPAGGTVTVHTEARGGVSVLRVENTGRPVPAELVPTLIEPFQRGTERVRADEHAGVGLGLAIVHSVVRAHGGTLGLVPRPAGGLLVTVRLPAAPSQPPR
>CP026121.1|AXE83391.1|41968_42607_-|Sugar-phosphatase-YfbT
MKYVLFDVDGTLIDAVRNQRRVWETWAVRYGLDADEVYRVALRTRPVETFAQVAADRDPSECLALLHELEDEDVRSGVYGAFHGASELLHGLPPGSWALVTSNYEHRVRGRFARTGLPVPDVIVDAAAVDEGKPSPAPYLRAAARLGARPADCLVIEDAPSGVRSGLGAGMTVWGVNTTAPVEGVHRHFASLREAVPHILAWTSGPQGNAAA
>CP026121.1|AXE83392.1|42747_43473_-|Pyrethroid-hydrolase
MTTYLLVHGAWHSPECWERVVPLLASAGHRVFTPSLTGYGDKAHLLGREVGLDTHVDDIVDLIAAEDLTEVVLVGHSYAGLVVSSAANRVPDRIARLVYLDAMVPEDGESAADVMPVTQVLIDLAEKSESGWRVPPLPELPPPSGLFGVTDPADTAWLRSILSDHPVRCLRQPARLDNPAVRTIPRTHIHCVVGMPEGFTHRPVPEIQPNGTPAQVWELPTGHDCMITMPSGLAALLLKLG
>CP026121.1|AXE83393.1|43655_44603_+|Helix-turn-helix-protein
MTGGPNLLGDYVRARRELVTPEQVGIPVVGARRVPGLRREEVAMLAGISADYYLRLEQGRDRNPSVQVLESLARALQLDDDATAHLLRLGAGRPRRPTPRSRNETVPEGIATLVATLPLPAVVEGRYFDVLAANALATALSPRLAPGGNRLRDLFLDPAEQALHPDWEKAAEGMVAGFRRSVGTETDDPRFVALVGELSLASDHFSRLWARHDIEVCEGAPKDIDHPRVGRLRLNRELLGIGGAAGQTLVLFHPDPGTDDAGKLALLASAVPAPSAPRPGRRRAGVVLRGRREGGDDDEGGDLGQTSGVIFPSVP

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Crispr_ID: CP026121_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026121_2

1011552-1011686

Orphan

Consensus_repeat	Method
GACGGGCAACACCCGGCTCGACCGGACGGGCCCGCACGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026121_2

>merge|CP026121|2|1011552-1011686|CRISPRCasFinder
GACGGGCAACACCCGGCTCGACCGGACGGGCCCGCACGCGCGCCTGGGCTCATGACTCCGGGCCCGCACGCGCGCGTGCGCTCACGACGCAAAGACGGGCAACACCCGGCTCGACCGGACAGGCCCGCACGCGCG

>CP026121|2|1|1011552-1011686|CRISPRCasFinder
GACGGGCAACACCCGGCTCGACCGGACGGGCCCGCACGCGCG	CCTGGGCTCATGACTCCGGGCCCGCACGCGCGCGTGCGCTCACGACGCAAA
GACGGGCAACACCCGGCTCGACCGGACAGGCCCGCACGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026121.1\|AXE84237.1\|1005506_1006418_+\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE84235.1\|1004071_1004974_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378343
CP026121.1\|AXE84232.1\|999906_1002444_-\|sensor-protein-BasS/PmrB	unknown	unknown	gnl\|CDD\|377989
CP026121.1\|AXE84245.1\|1016978_1017374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375228
CP026121.1\|AXE84246.1\|1017377_1018550_+\|Phthiotriol/phenolphthiotriol-dimycocerosates-methyltransferase	unknown	unknown	gnl\|CDD\|239217
CP026121.1\|AXE84240.1\|1011051_1011435_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE84238.1\|1006461_1006644_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE84243.1\|1014917_1016057_+\|N-acetylglucosamine-repressor	unknown	unknown	gnl\|CDD\|366120
CP026121.1\|AXE84248.1\|1019918_1020113_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE84249.1\|1020236_1021100_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176519
CP026121.1\|AXE84231.1\|999472_999910_-\|Roadblock/LC7-domain-protein	unknown	unknown	gnl\|CDD\|367422
CP026121.1\|AXE84247.1\|1018715_1019915_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378342
CP026121.1\|AXE84236.1\|1005074_1005371_+\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE84244.1\|1016325_1016883_+\|N-acetylmuramoyl-L-alanine-amidase-A	unknown	unknown	gnl\|CDD\|376556
CP026121.1\|AXE84234.1\|1003453_1004062_+\|Demethylmenaquinone-methyltransferase	unknown	unknown	gnl\|CDD\|369777
CP026121.1\|AXE84250.1\|1021305_1022406_-\|Acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
CP026121.1\|AXE84241.1\|1011692_1012859_-\|Xylose-isomerase	unknown	unknown	gnl\|CDD\|237170
CP026121.1\|AXE84239.1\|1006933_1009798_+\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|223627
CP026121.1\|AXE84233.1\|1002527_1003310_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225837
CP026121.1\|AXE84242.1\|1012989_1014435_+\|Xylulose-kinase	unknown	unknown	gnl\|CDD\|198375

Protein	Function_ID	Function_description	E-value
CP026121.1\|AXE84235.1\|1004071_1004974_-\|hypothetical-protein	gnl\|CDD\|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	4.84556e-12
CP026121.1\|AXE84232.1\|999906_1002444_-\|sensor-protein-BasS/PmrB	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	5.21806e-30
CP026121.1\|AXE84233.1\|1002527_1003310_-\|hypothetical-protein	gnl\|CDD\|225837	COG3300, COG3300, MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms].	2.74965e-38
CP026121.1\|AXE84246.1\|1017377_1018550_+\|Phthiotriol/phenolphthiotriol-dimycocerosates-methyltransferase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	4.90909e-19
CP026121.1\|AXE84247.1\|1018715_1019915_+\|hypothetical-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	1.28634e-20
CP026121.1\|AXE84245.1\|1016978_1017374_+\|hypothetical-protein	gnl\|CDD\|375228	pfam17648, DUF5519, Family of unknown function (DUF5519). This is a family of unknown function.	7.3507e-52
CP026121.1\|AXE84249.1\|1020236_1021100_-\|hypothetical-protein	gnl\|CDD\|176519	cd08577, PI-PLCc_GDPD_SF_unchar3, Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.	6.15532e-103
CP026121.1\|AXE84231.1\|999472_999910_-\|Roadblock/LC7-domain-protein	gnl\|CDD\|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	6.95922e-26
CP026121.1\|AXE84244.1\|1016325_1016883_+\|N-acetylmuramoyl-L-alanine-amidase-A	gnl\|CDD\|376556	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.	8.21504e-39
CP026121.1\|AXE84234.1\|1003453_1004062_+\|Demethylmenaquinone-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.04053e-18
CP026121.1\|AXE84250.1\|1021305_1022406_-\|Acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.01601e-41
CP026121.1\|AXE84241.1\|1011692_1012859_-\|Xylose-isomerase	gnl\|CDD\|237170	PRK12677, PRK12677, xylose isomerase; Provisional.	0
CP026121.1\|AXE84239.1\|1006933_1009798_+\|ATP-dependent-helicase-HepA	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	9.89342e-119
CP026121.1\|AXE84243.1\|1014917_1016057_+\|N-acetylglucosamine-repressor	gnl\|CDD\|366120	pfam00480, ROK, ROK family.	4.0186e-50
CP026121.1\|AXE84242.1\|1012989_1014435_+\|Xylulose-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0

>CP026121.1|AXE84240.1|1011051_1011435_-|hypothetical-protein
MRPSHLGEKAATLVGMALPPVPPHPPGPPRRRNPLIVLLAVLVAAAAVSVVVLMASGRDDPTDKEPPGDSASRTPAPSFGIPTELPSRLPSELPTRLPSGFPTRLPSDLPSGFESLLPSLDPDELLP
>CP026121.1|AXE84239.1|1006933_1009798_+|ATP-dependent-helicase-HepA
MFLPGDPARTGTVAFWRPNGTPPPAVAAATVADLTVVVPGDDGVEPEDVPAVLLPVRAALPVLTRARAGTHGHRSTVFWGAAALHALHLVARGLLLPGLSPGDHDAWRTGPLRAQDVEAVRRLAAAMPPEAHAVPPAGAGALRLPDPEQLLRAFLDAVADTLPRSPAAPLVTGGPAYAAPDPVHLPEQRAWAADVAAGHDAGVRLSLRIETQGLADATAFDDTAPDGTDVTFRAVLQVHSVSDAALVADAADVWADGARSEAFGPRARMDALLALRRAARAWPALTPLLSAAVPDAVELDDEEVTELLGAGARALAAAGVDVHWPKGLTRDLTTRAEVGPAEAGPSDNKTESESESVSESESGKASAAMPSFLSADALLAFNWSFTLGDQRLSREELDRLAEAKRPVVRLRDQWVLIDPQEVRLARSRQDHKVTPVDALGAALTGWAEVDGHRVEVRPTGWLAALRERLQNPEGQRPVEQPAALAATLRDYQRRGLNWLVSMTSLGLGCCLADDMGLGKTITLIALHLHRQTDSRSAGPTLVVCPTSLMGNWQREIERFAPGTPVRRFHGARRSLDGLADGEFVLTTYGTMRLDASRLAGVPWGLLVTDEAQHVKNPYSSTARELRSIGARARVALTGTPVENNLSELWAILDWTTPGLLGRLGTFRRRYAEAVEGGQDPAAADRLSRLVRPFLLRRRKSDPGIAPELPPKTETDHAVSLTQEQAALYEAVVREALAEIAGADSMARRGLIVKLLTGLKQICNHPAQYLKEERPVIAGRSGKLELLDELLDTILAERAGVLVFTQYVQLARLLERHLAARGTPTQFLHGGTPVAEREAMVRRFQDGDVPVFLLSLKAAGTGLNLTRAEHVVHYDRWWNPAVEAQATDRAYRIGQTRPVQVHRIIAEGTIEDRIAELLARKRELADAVLGSGEAALTELTDAELADLVELRGGLR
>CP026121.1|AXE84238.1|1006461_1006644_-|hypothetical-protein
MSKNAKIAAGGVAVGLILLIWLPWWAALLIILGVPAAAYLTLDPSQRRRLRRATRKELGR
>CP026121.1|AXE84237.1|1005506_1006418_+|hypothetical-protein
MAGTDEDAVAAADDALYVLTAVLLTPAKFPSVLGDDYPEACAALGLAPLADGYGLVLGQDGDGARWTVVIDDVSLVAVAIASWDCGMEYELSPDERTVVAALPGWPLAVAVAAPGVPAPHDPGPEVDDRAPLAPPDTTVWGPAQRRLGADEIALQWATWREQVDDAAFATPGPSRTTGEGDDGAEDGGAEDGGEVAGGPEQSGGNERSGGNGQPGHSGIRRVLAEARTYLDSPPPLGRVRSSFAPGDARTLRADGPGWSLVARTDDIAFVLLDEEPGEVLPVGRGPELPGLLEALDKMAVRPN
>CP026121.1|AXE84236.1|1005074_1005371_+|hypothetical-protein
MWNKVRKAGGRVAGALRTETKSDGDKRPHNLFEAAAVYVTACAEDDQERADEASGWVSPEALSFGVNELACRAVVALARERGESPGTVARELLGLPTA
>CP026121.1|AXE84235.1|1004071_1004974_-|hypothetical-protein
MKRFERLERIRRMDPYRDASDIYRLSVAYEFPWDFTRSLELALYRTYAVPSIGRLLAETAELTERTQKRYDDTSLLLDAIVEHGFDAQQGRTAIRRINQMHRSYDISDEDMRYVLCTFVVMPRRWIDAYGWRRMSSHEVVASVVHYRTLGRHMGIKDIPETYEEFETCLDDYEAAHFAWDEDARRVADATLDLMVSWYPRPLAPLLRAAILSLLDDPLLRAFRYTSPSAATRAWARRAVRLRGRAVRLLPPRRAPHFARQNWEIKGYPNGYRIADLGTRPVPGVRGCPVRHVEVPGSEAR
>CP026121.1|AXE84234.1|1003453_1004062_+|Demethylmenaquinone-methyltransferase
MRYMSDEQTRVQEFFTARAADWDTRFPDDGPAYAAAVAELGLRAGDRVLDAGCGTGRALPPLRAAVGPSGVVLGADLTPAMLREAVRAGRDRDGALLLADVAALPLRPRSLDAVFGAGLISHLPSPAENLRELARVVRPGGVLALFHPVGRAALAARHGRPLTPDDLRAEPNLRPLLAGSGWRLTSYVDEDARFLALAVRED
>CP026121.1|AXE84233.1|1002527_1003310_-|hypothetical-protein
MGHLDHAALGWLTPALSYVMACIGAALGLRCTVRALAATGRSRRNWLVTAASAIGTGIWTMHFVAMLGFSVAGTDIRYDVPLTLLSLLVAMLVVCAGVFAVGYGRDRGRALLLGGLTTGLGVASMHYLGMAAVRLHGDVTYDPVLVGLSVLIAVVAATAALWAALNIKSPVAVTLASLIMGAAVSSMHYTGMFAVSVRVTPSGEALPGATAMQFIFPLAVGLGSYLFLTSAFVALSPTAGEREATASAQRPVGTPAHQRP
>CP026121.1|AXE84232.1|999906_1002444_-|sensor-protein-BasS/PmrB
MRTPRRTPAAGPDTPPPPPARGRRAHAGPPADEGPETPPGTAQDGIPPRAERWHIRPRTVRAKIVCLLMVPVVSLLALWAYATVTTAQDVSRLRQVQRVDAAVRAPVSAAVAALQAERAAAVRHATDPSAVRADELAELARRTDRAVAKLRLGKDNTVADSEELPAGVARRLEEFVTGAEQLRPLRTEIRDRRVDWAETYSRYTRTISAAFGVGGALTGIQDADLGSDARVLLEFARAGEALAREDAVLASARLDGALNGERLRIFTGAVELRRTLTESAVADLRGTERSAWDALSDSSAYAGLGDAEDRILARGPGAKAVEAAPEHTWNTAHTRVQHGMRTIEDDAARGVAERADPFTRGLLTPAGAAVLLGLAAVAASLVISVRIGRGLVVELVSLRNSALEIARRKLPEAMRKLRAGEEIDVRAEAPPGPPAEDETAQVAEALGTVHRAALRAAVERAELASGISGVFVNLARRSQILVHRQLSLLDSMERRSDDPDELSDLFRLDHLTTRMRRHAESLIILSGAAPGRAWRMPVSLTNVVRAAVSEVEDYARVEVRQLPEAAVIGTAVADLTHLLAEIIENAAQFSPPHTRVRITGEPVGNGYAVEVEDRGLGMGQETLAEANRRIAQSEALDLFDSDRLGLFVVSRLAARHDVKVHLRTSPYGGTTAVVLLPTALLHTGAAQRSPEEAAHARQPEERAYARVPDDHSLQDPVTAPADRRALVAPVPAAAETTGRAESPGHTPPPGVATLRLHRPQEQPEGSDDLPRRVRQASLAPQLRDGRPEEHPPTPASGDDDRTPELVRDRMAAYRDGWARGGGRQPGRGTTPGPAAGSDSSEGDPA
>CP026121.1|AXE84231.1|999472_999910_-|Roadblock/LC7-domain-protein
MIQDPSTRTARPSGELDWLLDDMVLRVSEIRHAVVLSNDGLAVGASSDLRREDAEHLAAVASGFHSLAKGAGRHFGAGGVRQTMVEMDEGFLFVAAAGDGSCLALLTAVTADIGLVAYEMARLVKRVGEHLGTAPRVGARPPAAG
>CP026121.1|AXE84241.1|1011692_1012859_-|Xylose-isomerase
MSYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTEREAHIKRFRQALDATGMKVPMATTNLFTHPVFKDGAFTANDRDVRRYALRKTIRNIDLAVELGAQVYVAWGGREGAESGAAKDVRAALDRMKEAFDLLGEYVTSQGYDLRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDLDGVWASAAGCMRNYLILKERAAAFRSDPEVQEALRAARLDELAQPTAADGLQALLADRSAFEAFDVEAAAARGMAFERLDQLAMDHLLGARG
>CP026121.1|AXE84242.1|1012989_1014435_+|Xylulose-kinase
MSAAEGPLVVGVDSSTQSTKALVVDAATGRVVASGQAPHSVSSGAGRESDPRQWWDALCEALRQCGDAAHEAAAVSVGGQQHGLVALDDRGEPVRPALLWNDVRSAPQARRLTEDLGGAKVWAERTGSVPAASFTVTKWAWLAEHEPEAVRATKAVRLPHDYLTERLTGQGTTDRGDASGTGWWASGTEAYDEEILAHVGLDPALLPRVVRPGEVAGTVRDSHDLPFSKGTLVAPGTGDNAAAALGLGLRPGMPVLSLGTSGTVYAVSRRRPADPSGTVAGFADARGDWLPLACTLNCTLAVDRVATLLGLDREAVEPGTAVTLLPYLDGERTPNLPNASGLLHGLRHDTTAGQLLQAAYDGAVHSLLGALDLVLDEDAEPSAPLLLIGGGARGTAWQQTVRRLSGRPVQVPEAKELVALGAAAQAAGLLTGEDPAAVARRWDTAAGPVLDAVERDEETLARIAGVLSDAAPLLERGTAGS
>CP026121.1|AXE84243.1|1014917_1016057_+|N-acetylglucosamine-repressor
MRRRNLARVMHTVRAEGPLSRAAVAARIGLTRAAVSTLVDELVRAGLIEELGPERPGRVGRPGSALAVSARGPAGIGAEIGVDHLAVCAVDLRGTTRARAIRQGVNRGRSPEPVLAELTELIHGVVAEAEAEGLWPAGLAVAVPGLVARDSRTVVRAPNLDWHDTDLGGLLPSEFPLTVDNEANFGALAELWLGDGTPGDFLHVSAEIGIGGAVVVDGGLLRGTRGFAGELGHVPVQPDGPVCACGGRGCLEQYAGEEAVLRAAGLEPDEDRVGLLAGRAADGDEDVRRALREAGTALGVALTGAVNLLDPESVVLGGELSGLAPWLLPSLREELARRTAGPVCPVSVSRLGPEGPLLGAAHSVVRAVLDDPAAVAGRA
>CP026121.1|AXE84244.1|1016325_1016883_+|N-acetylmuramoyl-L-alanine-amidase-A
MGAALTAVPLALLPDARAAARPQAVDHPGAAWQPASRANYTPSNRPRAHPLRYVVIHVAQTTYSGTLSVFRNPRTKVSAHYVVRAADGKVAQCVRESDIAWHAGNWDYNTRSIGIEHEGWVDRPKYFTDVMYERSARLTAAICARYDIPRDRAHIIGHHEVPGSDHTDPGRHWDWKRYLRLVNSF
>CP026121.1|AXE84245.1|1016978_1017374_+|hypothetical-protein
MTLAQRALERLQAWPDLTAGPASCGTGRALRSVRDEIVHFHSPRDVDLHLTRRAIQRFHYDLSGSSAIRLVPGSCWVTVHLDCEADVDLLLTLVSSALKAHQARPPADEPRPVGCNFHRVTVLPRDAAAGG
>CP026121.1|AXE84246.1|1017377_1018550_+|Phthiotriol/phenolphthiotriol-dimycocerosates-methyltransferase
MPSRPEAVNAEAWNTYGAHHLRRGTVLPEAAGLDWGFGGAGPGVEVLGELTGRRVLDLGCGPARHAAYLVRAHGALVDAVDASAGQYERARARYGSLPGLRLVLADAVEHLRSAEPYDVVYSVNAVPYLDPHRLLPALAGALRPGGRFCFTVLHTNARGDGPSERVAARPEILRLAGGGDVTVQMWVLTPDLWAELLTEYGLRVERVDVLGTPQDGNQASYRLFQVTRPVRVSSRPRVGKPPPAHAALGVGAVLYGPRGLLLGRHRRGTWELPGGTVEPGESLRETVVRELGEETGIVARPQDVRLLGTLLDDVGGVVRVTVAALVTAWRGEPSDQPGESVGRWRWFALDRLPDQLFVCSAQALTAWRPGLPIDHTPAHFTPYTTGTDDG
>CP026121.1|AXE84247.1|1018715_1019915_+|hypothetical-protein
MLAFLTAFGALAGAGLAGAAPAGAVQKGVRVAPGVTYQEFDIKAAKGVTHAHVLSVDLGHPNVRVELLYPGAVASRAQVSRMADAQGAVAGVNGDFFNISETQHPGVEATGASVGPAIAAGRTLKAAVPNGQRFGPALPPGTSTEDVFGVGTDGRARLDRLALRGSVRTSEAQLPLGGLNQYALPVGSVGAFTSDWGSASRVRATCGTDTDRAAPCSTDTYEVTVRDGKVVSAADTPGSGPIAAGTTVLVGREAGAQQLRKFSTGEAVEVEHALVAATSGTPYRLALGGYPVLTGGRPLPGLDDTASAVRTAVGIADGGQRVLLLALDGAAAYRTGLTIAEVAGAMRKLGSDDAFSLDGGGSSTLVARKPGASTVSVRNHPSGGAERAVPNGIGVFSGA
>CP026121.1|AXE84248.1|1019918_1020113_-|hypothetical-protein
MAISISAVLLLVILAVIFLRNGGLKVSHALVCLLLGFYLASTSIAPTIHSGLTATADIVSSLRP
>CP026121.1|AXE84249.1|1020236_1021100_-|hypothetical-protein
MALTTRRRALTTLGAAFAGAVALPATDASAGERRHGRRPLWRAHAHNDYEHPRPLFDALGHRFGSVEADIYLIGDQLLVAHDPEDLDPARTLESLYLDPLAARVRANRGRVYRGYRGSLQLLIDIKTEGASTYLELDRHLRRYRHLFTTYAHGRVHRGPVTAVISGDRAARAPMEAQTVRRAFYDGRLTDLGSQAPASFIPLISDNWTLNFTWRGVGAFPDAERQKLRGIVAAAHQRGRRVRFWATPDLAGPARDALWSELLAADVDHLNTDDLAGLEAFLDARRAA
>CP026121.1|AXE84250.1|1021305_1022406_-|Acyl-CoA-dehydrogenase
MEGPGPVKNERDLLYSEEEEALRAAVRDLLADHCDAPGVIARTESDAPHHLELWKTLTDGMGLAGLLVPEELGGQGATHREAAVVLEELGRAVAPVPYLTSAVVATEALLACGTDDLLRELASGTSIGVLAVALNVAPGTAYKVVRHDDGVLRGELTAIADATAADVLLVPADDGGLYAVDATAATVTPQISLDLTRPLATVTLDGVPGRLLGDAEPAVRRALRAGAGLLASEQFGLADRSLTETVRYLKERKQFNRPVGGFQALKHRLAQLWLESVNLRAAARNAADALATGEDVDVAVSVAQAYAAPVAVHAAEEALQLHGGLGMTWEHPAHLYLKRAKADSLAYGTAGAHREALAALVDLQAP

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Crispr_ID: CP026121_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026121_3

1153997-1154147

Orphan

Consensus_repeat	Method
AGAGGTCGCGCGAGCGGCCGACGGTGGGCGGGCCCGCGCGACGACCGCAGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP026121_3

>merge|CP026121|3|1153997-1154147|CRISPRCasFinder
AGAGGTCGCGCGAGCGGCCGACGGTGGGCGGGCCCGCGCGACGACCGCAGCCCGGCAGGGGCGCGGGCCCGGCGCGCGCCGCTCCCGCCCTGCGGCCCGAAGAGGTCGCGCGGGCGGCCGACGGTGGGCGGGCCCGCGCGACGACCGCAGC

>CP026121|3|2|1153997-1154147|CRISPRCasFinder
AGAGGTCGCGCGAGCGGCCGACGGTGGGCGGGCCCGCGCGACGACCGCAGC	CCGGCAGGGGCGCGGGCCCGGCGCGCGCCGCTCCCGCCCTGCGGCCCGA
AGAGGTCGCGCGGGCGGCCGACGGTGGGCGGGCCCGCGCGACGACCGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026121.1\|AXE84374.1\|1148876_1151261_-\|Xylulose-5-phosphate-phosphoketolase	unknown	unknown	gnl\|CDD\|235379
CP026121.1\|AXE84375.1\|1151372_1153853_-\|Thermostable-beta-glucosidase-B	unknown	unknown	gnl\|CDD\|224389
CP026121.1\|AXE84372.1\|1143841_1148122_+\|WD-domain,-G-beta-repeat	unknown	unknown	gnl\|CDD\|238121
CP026121.1\|AXE84384.1\|1163046_1163517_+\|putative-HTH-type-transcriptional-regulator-YtcD	unknown	unknown	gnl\|CDD\|224647
CP026121.1\|AXE84378.1\|1156814_1157252_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373120
CP026121.1\|AXE84366.1\|1136977_1138225_+\|p-hydroxybenzoate-hydroxylase	unknown	unknown	gnl\|CDD\|236198
CP026121.1\|AXE84368.1\|1138647_1139763_+\|putative-cation-efflux-system-protein	unknown	unknown	gnl\|CDD\|223131
CP026121.1\|AXE84381.1\|1159453_1160623_-\|Elongation-factor-Tu	unknown	unknown	gnl\|CDD\|237184
CP026121.1\|AXE84385.1\|1163676_1164552_+\|Undecaprenyl-diphosphatase	unknown	unknown	gnl\|CDD\|237134
CP026121.1\|AXE84376.1\|1154195_1156016_-\|Ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl\|CDD\|366226
CP026121.1\|AXE84380.1\|1158523_1159369_-\|spermidine-synthase	unknown	unknown	gnl\|CDD\|179854
CP026121.1\|AXE84371.1\|1142826_1143354_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|100051
CP026121.1\|AXE84379.1\|1157431_1158487_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370676
CP026121.1\|AXE84382.1\|1160967_1161759_+\|TVP38/TMEM64-family-inner-membrane-protein-YdjZ	unknown	unknown	gnl\|CDD\|223475
CP026121.1\|AXE84377.1\|1156271_1156763_+\|UTP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|224131
CP026121.1\|AXE84369.1\|1139764_1140322_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240137
CP026121.1\|AXE84370.1\|1140365_1140938_-\|HTH-type-transcriptional-regulator-SinR	unknown	unknown	gnl\|CDD\|380339
CP026121.1\|AXE84373.1\|1148165_1148804_-\|Inner-membrane-protein-YabI	unknown	unknown	gnl\|CDD\|223659
CP026121.1\|AXE84383.1\|1161783_1162953_-\|3-ketoacyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|238383
CP026121.1\|AXE84367.1\|1138226_1138574_-\|HTH-type-transcriptional-regulator-KmtR	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713

Protein	Function_ID	Function_description	E-value
CP026121.1\|AXE84374.1\|1148876_1151261_-\|Xylulose-5-phosphate-phosphoketolase	gnl\|CDD\|235379	PRK05261, PRK05261, phosphoketolase.	0
CP026121.1\|AXE84375.1\|1151372_1153853_-\|Thermostable-beta-glucosidase-B	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	1.39019e-70
CP026121.1\|AXE84372.1\|1143841_1148122_+\|WD-domain,-G-beta-repeat	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.64359e-46
CP026121.1\|AXE84384.1\|1163046_1163517_+\|putative-HTH-type-transcriptional-regulator-YtcD	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.70915e-29
CP026121.1\|AXE84378.1\|1156814_1157252_-\|hypothetical-protein	gnl\|CDD\|373120	pfam14539, DUF4442, Domain of unknown function (DUF4442). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 139 and 165 amino acids in length. There is a conserved PYF sequence motif. There is a single completely conserved residue N that may be functionally important.	2.19132e-21
CP026121.1\|AXE84366.1\|1136977_1138225_+\|p-hydroxybenzoate-hydroxylase	gnl\|CDD\|236198	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.	4.34056e-178
CP026121.1\|AXE84368.1\|1138647_1139763_+\|putative-cation-efflux-system-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	6.91955e-81
CP026121.1\|AXE84381.1\|1159453_1160623_-\|Elongation-factor-Tu	gnl\|CDD\|237184	PRK12736, PRK12736, elongation factor Tu; Reviewed.	0
CP026121.1\|AXE84385.1\|1163676_1164552_+\|Undecaprenyl-diphosphatase	gnl\|CDD\|237134	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed.	2.31455e-144
CP026121.1\|AXE84376.1\|1154195_1156016_-\|Ricin-type-beta-trefoil-lectin-domain-protein	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	2.88583e-15
CP026121.1\|AXE84380.1\|1158523_1159369_-\|spermidine-synthase	gnl\|CDD\|179854	PRK04457, PRK04457, polyamine aminopropyltransferase.	1.10542e-12
CP026121.1\|AXE84371.1\|1142826_1143354_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	5.06639e-82
CP026121.1\|AXE84379.1\|1157431_1158487_+\|hypothetical-protein	gnl\|CDD\|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	9.65349e-09
CP026121.1\|AXE84382.1\|1160967_1161759_+\|TVP38/TMEM64-family-inner-membrane-protein-YdjZ	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.31887e-26
CP026121.1\|AXE84377.1\|1156271_1156763_+\|UTP--glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.62042e-36
CP026121.1\|AXE84369.1\|1139764_1140322_-\|hypothetical-protein	gnl\|CDD\|240137	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	6.94846e-76
CP026121.1\|AXE84370.1\|1140365_1140938_-\|HTH-type-transcriptional-regulator-SinR	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.33522e-17
CP026121.1\|AXE84373.1\|1148165_1148804_-\|Inner-membrane-protein-YabI	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.95641e-39
CP026121.1\|AXE84383.1\|1161783_1162953_-\|3-ketoacyl-CoA-thiolase	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	1.12581e-180
CP026121.1\|AXE84367.1\|1138226_1138574_-\|HTH-type-transcriptional-regulator-KmtR	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	1.32159e-14

>CP026121.1|AXE84375.1|1151372_1153853_-|Thermostable-beta-glucosidase-B
MTDTVPRIPRRSALRLLGGAIAVAAAATGGPTAPPRAHARDGDAPGAGARVDALLARLTLDEKISLLHGATDPRPLGQAGYLPGVERLGIPPLRLADGPAGVRVTRHATALPAPVMLASAFDPELARRYGQVIGREGRALGQDVLLSPMVNLIRTPYAGRNFETFSEDPLLSAHLVAAEIEGIQGEGLIATVKHFALNNQEHDRMSVDVRVDERTLHETELRGFEAAVAAGAGAVMGAYNKVNGTFACENAALLTGVLRERWGFTGWVMSDWSAVHSTREALLAGLDMEMPDGTHFGTPLASAVRDGDVPASYVDRAARRVLGVMDRFGLLDGTAPPRPDPDARAGAAVAREVAEAGAVLLRNEHGTLPLAGGTSVAVIGPTGARPLVSGGGSAHVVPEHADSPLDALRPRAARVTYALGEDVFGRPVPASALDPGFDTEAQRVEAGRTWTYDGTLTVTDPEEWTFVLHYSGTPPLRPKVRLDGEELFPLTPGWNEYFTGGLLTHADDGLSVRRKALKLTRGAHRLTITAPGGDTGQLFRLRRVTAATRADDVAQAVRAARAARDVVLFAYEDAIEGQDRSTIALPGNQERLIEAVTAANPRTTVVLNTSSATSMPWLERTGAVLQMYYPGQEGAAATAALLYGDRDPGGRLTQSFPADDDHHPVAGDPRRYPGVDGTEAYAEGIHVGHRWYDAEDVRPLFPFGHGLSYTTFAYADPDARWRADGLDVAFTVRNTGRRDGVDVPQVYAGPSPDLPLDQPVRVLAGYRRLALRAGEERRVTVHVEPRALSSWDADAHDWVLGTGVRTLWIGASSRDPRLRTSVRVGG
>CP026121.1|AXE84374.1|1148876_1151261_-|Xylulose-5-phosphate-phosphoketolase
MPEAPRQHSPTAPTDEELRTLDAHWRAANFLAAGQIYLLANPLLTEPLRPEHIKPRLLGHWGTSPGLNLVYTHLNRVIRNRGLDALCVWGPGHGGPSVLANSWLEGSYSEKYPDVSRDARGMELLFRQFSFPGGVPSHVAPEVPGSIHEGGELGYSLAHAYGAALDNPGLLVACVIGDGEAETGPLAGSWHANKFLDPVHDGAVLPILHLNGYKIANPTVLSRLPEQELDALLRGYGHEPVHVSGDDPAAVHRAMAEALDTALDRIAEAQRAAREQGVTERPRWPVIVLRTPKGWTGPAEVDGQPVENTWRSHQVPLAGVHDNPDHLRQLEAWLRSYRPEELFDADGRPVADVLAPIPEGTRRLGATPHANGGLLVRDLPVPSLDDFAVPVDKPGTTLHEPTRVLGDLLARVMRDTAGRRDFRLVGPDETASNRLQAVFDASGKTWQAETLPVDEHLDRHGRVMEVLSEHLCQGWLEGYLLTGRHGLFSCYEAFVHIVDSMVNQHIKWLRTSRRLPWRAPIASLNYLLTSHVWRQDHNGFSHQDPGFVDHVLNKSPEVVRVYLPPDANTLLSVADHALRSRDYVNVIVAGKQPCFDWLSMDEARVHCARGAGIWEWAGTENGGEPDVVLACAGDVPTQETLAAAHLLRRHLPELSVRVVNVIDLARLLPREEHPHGMNDFEYDGLFTTDKPVIFAYHGYPWLIHRLAYRRTGHQHLHVRGYKEAGTTTTPFDMVVRNDLDRYRLVMDVIDRVPGLAVRATAVRQRMADARTRHHAWIREHGTDLPEVAEWSWNA
>CP026121.1|AXE84373.1|1148165_1148804_-|Inner-membrane-protein-YabI
MHVQEWLETVPAVAVYALVGVVIGLESLGIPLPGEIILVSSALLASQHGDIDPVVLGASATAGAIIGDSIGYAIGRKGGRPLLAWLGKKFPKHFSEGHIATAERSFEKWGMWAVFFGRFVALLRIFAGPLAGVLRMPYWKFLIANVLGGILWAGGTTAVIYYVGIVAESWLKRFSWLGLVAAVLIGLTSMLVLKRKAKKANQNVEAAEPQAL
>CP026121.1|AXE84372.1|1143841_1148122_+|WD-domain,-G-beta-repeat
MTSGGLERARVAELIVTRADGPYRGSGYRVSRNAVLTAAHVVEGSVSVRVRFEADLPGEWSTPGKTWWGVPGWDIAVVLIDPRPGEPSIVAARCAEVGAQPTVFEAQAVGFPLWKLRSDDGATPVAAVPPVRDSGQTFYRDYHHAVGRVASISNSREGTLELELPSPPMGSWKGMSGAALWRGDRIIGVVTHHHGQEGGRLTAVRLDRVLEDSDPTAKARLRHLLGPLERPALPVTVIEPSPRPAVTGHTVARPELCEPLVERLVSPSGRVPEAGRVSAVLEGPGGFGKTTLAALACDDPRVHARFGTRVYWVTLSEGDQDTDILPKVNDLIAALSGTSTRFGTLGQAKGELGRLLGTERVHGPVLLVIDDVWRPEQLAPFLEGACTRLVTTRTRGLVRDAFTLDVGVLDGSQTLELLTRDLEQGGEARWQPLLRLTGGWPILVGLANRALVRRTRNGLPLADALRFAEENLTVGGPTALDYAKPEHRQQAVFHTVEASLRLLGATDARWPEFFADLAVFPKGVAIPVTTLATYLGITQGETETLCLELADLSLLQRLELAQPASVRLHDVIHHYLAHRTQGRRRELHRQLLDTHAAAHGLLHASAPVRWWELASTEPYLWDWLAYHLSEAADGGADPLLRDLRWIEARVRNSGPGVIGRDFAHATAEDRVLRLLCETLTRSTHLLVPVDQPSVLMATMAGRLHGVEALAEVVELYERHAPGPWLAPAWPLPDQPPRAFRGTRATLDTAVFAVTPDGTRMATGHRDGTVRVWDTAGDRELCRTRLHTGCVMSIDITADGNRVVGTTVAGSGFLWEWQGGVVKSLPGSRRAGDVTTGPRRADDQRSVRIATSAGELGVRFFDEDGRPRRLRPTWGRLLWPQSNPGLAGMVLMGLSPVLVPRPAIPVALLVAFAFTVALIMLRQPWSRRSPNLAEYAEAVYAVALSPDGSLLATAGSLDRTVRLWEPVKGRLRASFSTSPDQGSPDQWGAVAISADNGWVAQAGTRGVFRLWNIRTRRLHVTQKVQVPPTLIPAPSVAFSADGRWVACGSGGELRVWRVADGIQRARLGGLAAVVSDVTFTPDGQDLLSAHLTSHVRVWHLPDLMGSASPRAGSTAETGESGNPFVTDAAFSPDGSWLVMAGADHHVKARAIDGGDLCSFSGHTGAVWAVAVAPDGSWLAGGGDDHTVRLWAPDGSLRGTLTGHAATVCAVAISPDGSLLATGDIDGSLHIWDSRRGALGTASPLTTLGTGPTDADEQQLAFTGDGRLLAANSNGLVIGWHTRDWTPAPTHDLRDPEGTQDGDWGSDALAVSKDGRRLAAFTRHSSSIKVFDLASHDLPPQRHGASLSHVRGLCFSPDNRLLASAHADGTLRVWATGRSDCVTALRVDGFLRRCAWSPTGTHLVAVGTGGIYLFTLRSPHSADQDSPG
>CP026121.1|AXE84371.1|1142826_1143354_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase
MGQRAMITGIGGREPEIDETAFVAPTASVIGGVTLRSGASVWYGAVLRGDVESITVGASSNVQDNCTLHADPGFPVTVGERVSIGHNAVVHGATVEDDCLIGMGATVLNGAVIGAGSLVAAQALVPQGMVVPPGSLVAGVPAKVRRELSEEERQGVTLNGTMYAELAKAHREVHA
>CP026121.1|AXE84370.1|1140365_1140938_-|HTH-type-transcriptional-regulator-SinR
MSDLDLLTQSLARSVKHWRAVRGFTLDVLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGISITTLLDYEQGPNVRVIPADQAVRLWHTDAGSYNRLLAGTEAPGPLEMWDWRLMPGESSPSDPHPAGTIELLHVTAGELTLTVDGVEHRVPAGASVHFEANVPHVYGNTGEVPMEMVMAVSVPPVP
>CP026121.1|AXE84369.1|1139764_1140322_-|hypothetical-protein
MRAPLGHFDNARPAPDCLGELTGPVAAAVRDWAGSVPADQIVYVDTDPEWADTATFVEHYGRELLEQSANCVVVAGRRGGETTLAACVVLSTTRVDVNGVVRRHLGVRKASFAPMDTATGETGMEYGGITPLGLPGDWPVLVDAAVTDLPYVLVGSGRRRGKLLVPGKAFAELPGAVVLEGLGVS
>CP026121.1|AXE84368.1|1138647_1139763_+|putative-cation-efflux-system-protein
MSDHRHEHSHEHRHEHADGHRHQHADGHGHSHGRRHEHSPGRRHGLRHRLGHLLTPHSHETADKVDSALESSARGMRALWVSLAVLGVTALAQAAVVAVSGSVALLGDTVHNAADALTAVPLGIAFVLGRRAATRRFTYGYGRAEDLAGLVIVLTIAASAAFAGWAAIDRLLDPRPVAHVPAVAVAALVGFAGNEWVARYRIRVGRSIGSAALVADGLHARTDGFTSLAVLLGAGGSALGWQLADPLVGLAITAAIALVLRDAAREVFRRVLDAVDPALVDRAERALTEVPGVRGVGELRLRWIGHRLRAEVAVVVDGGVTVREAHRIAVDAEHALLHAVPRLTAALVHADPEPHPGEADPHLPLAHHAAA
>CP026121.1|AXE84367.1|1138226_1138574_-|HTH-type-transcriptional-regulator-KmtR
MHLSPAHDAHPRHPGEEQFALAAELLALLGDRTRLALLHALTGGEADVTTLTQACGAARPAVSQHLARLRLAGLVNTRKEGRRVIYALRDGHLRRLVDEALNVADHRLSDRPPHD
>CP026121.1|AXE84366.1|1136977_1138225_+|p-hydroxybenzoate-hydroxylase
MRPPHNERMTHACPPANSGAPQRFPVVVVGAGPAGLTVGNILRVAAVDCLVLETETRESIEQRPRAGVIEEWAVRGLEKRGLARNLLDRAELHTACEFRFDGERYRFPYGELTGSHHFVYPQPLLVTDLVREYADVRGGRIRFGVRDVRLHDLGTDRPSVSYLCPDTGERQVVHCDFVAGCDGARGVSRAALPPERVRIARHDYGIGWLALLAEAPPSADCVLFGCHARGFAGQMPRSPEVTRYYLQCPPGDDPENWPHERVWAELQERLGASGVPPLTEGRLIEKRVLDMHDYVVEPMVCGRLFLAGDAAHLVAPIAAKGMNLALHDAFLLGDALVAHLTTGDDSGLAGYAEACLRRVWDYQEFSQWLSEVYHGTAAGDPFRAGTTLARLRRLFTSRAAAAAFAEQYLGTAARY
>CP026121.1|AXE84376.1|1154195_1156016_-|Ricin-type-beta-trefoil-lectin-domain-protein
MQSPYPPRPPYPPRPGARPAESDRNLLARVGEPGEGPRAVALLLARHWRAVYEYAVICLASSADSASMAAAAAFRRELALPGGGALRPRLLAAVRDTVGEWAADDGISGVLPELRKTVGARGLRAARSVTPERRRLAERAFRALPGASQCLLWHTEVEAEPISVPAGLLGVDAGTASAALEQAREQFRAGCVRAHRELAPTRECRYYNRLLDVPMRRGGALLPDVQRHLMACRYCRHAAEQLSHFEGGLEDLLVETVLGWGARRYLASRPGRDGGQGALTAGGRHRLRARALPAGGRPGTPRRHTKALAAAIGVTSLVLLATLLAARGWSEEGGTAGPQATWGAVSGHSVEPDTGGPSSAEPSSADAPSNASAGSPAEVARGRLRNLDAGLCLDVRGGRGRADTRVVLAACSTESPQWSYQEDGLLRSAADPTRCLDSDPAAGSVVLAGCLVHAGVVRYDLTVRGELLPRAGKGLAVAPGKGRSVIVTGRDGSAAQRWALEPAIAPEDTGPSRKNRAQDAPPKTRPEQSPPYADAPPGQRPEPPRTTPEGPPPKRYETRVAQVGCCGEAEPEPAPDAAGGPGTDVLGAAPATVTDTVTTLHSAVLR
>CP026121.1|AXE84377.1|1156271_1156763_+|UTP--glucose-1-phosphate-uridylyltransferase
MQGRLVHEISHPQRSPRCLSARSLGDDLIDPRDTLLGRMLDVRDGRLGSVVALLEMPPEQVHLYGCAAVEPAGEEDVVRVTGLVEKPAPHSAPSPYAVIGRYVLAPDVFRGQRYDTGDKADHLRTVVRVACERPDLRPEFTAWLKGFVAGLDDACPARRDIAA
>CP026121.1|AXE84378.1|1156814_1157252_-|hypothetical-protein
MSIGEMLAATVPMARTLNLEFLETTPERAVVSLPDQSEYHNHVGGPHAGAMFTLGESASGAIVLAAFGDQLSRAVPLAVSAEIAYKKLAMGAVTATATLGRPAAEVVAELDAGERPEFPVAVAIQRADGAVTGEMTVVWTLRPNG
>CP026121.1|AXE84379.1|1157431_1158487_+|hypothetical-protein
MWPGQQPPGGEQNPQANNPYQQPGYQQPNPYQQPGYQQNQQPGYQQPNPYGQQPPQPPQPPQPQWGAPAPAGAPQPPQGGGGGNRTKLVAIIAATAVVVAAGVTGFLVLGGDKDDTANGGGKDAKASASPSAPEPSPPATGDNPRGGEEEQPTVKGWKVVVNPKWGTAFDVPADWEVASPKSSVFFEDEKSDDGKPLIIMSAPAFYKSKWCTSDDNKDGRTESESLAGAGTKGADGAKNTDEVALNQVAWWVYGGYTQPDKKSVKTDEKAKPYTTASGVKGSVAWAWSENTPDKGKCASDGKAVTFGFKNSAGDFVAWSFFGAKGVKEEVPKETILKILSTVRLHGEPTGG
>CP026121.1|AXE84380.1|1158523_1159369_-|spermidine-synthase
MKEAIPVARTVDHGFAKLMPDIDRDRAWLLTVDGAPQSYVDLDDPTHLEFEYARRLGHVLDVVAEPGRALDVVHLGGGALTLPRYVAVTRPGSRQDVVEADRGLLELVAERLPLPEEARVALHAADARAWVEGAAARSADVVVADVFGGSRVPAHLTSVAYVEQAARVLRGSGVYLANLPDAAPFAFLRSQLATLATAFEELVLIAEPGVLRGRRFGNAVLVAGHRPVDVAALTRLMAADAFPARVEHGAALREFIGGARPVRDEEAVPSPEPPDGAFGIG
>CP026121.1|AXE84381.1|1159453_1160623_-|Elongation-factor-Tu
MSKTAYVRTKPHLNIGTMGHVDHGKTTLTAAITKVLADRGTGAFVPFDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDGIMPQTAEHVLLARQVGVDHIVVALNKADAGDEELTDLVELEVRDLLTAHGYGGDSVPVVRVSGLKALEGDPRWTASIEALLDAVDTYVPMPERYVDAPFLLPVENVLTITGRGTVVTGAVERGVVRVGDKVEVLGASVETVVTGLETFGKPMEEAQAGDNVALLLRGVPRDAVRRGHVVAAPGSVVPSRRFTAQVYVLSAREGGRTTAVSSGYRPQFYIRTADVVGVVDLGEAAVARPGDTVVMAVELGRDVPLEAGLGFAIREGGRTVGAGTVTVVG
>CP026121.1|AXE84382.1|1160967_1161759_+|TVP38/TMEM64-family-inner-membrane-protein-YdjZ
MLDATTRSGGTATASPRAATAELAVAASPATTASPAAPTGFAARCTRVLLSPWSRLSLLVALLAGAACTMLLFEPQRLLTQGWPPQLSGAAAALVFAVAYGVCTVAFVPRPLLNLAGGALFGSQVGLGVALAGTVLGAGIAFCLGRALGQEALRPLLRGRWLKAADGQLSRHGFRSMLAVRLFPGVPFWAANYCAAVSRMGLLPFLLATGLGSIPNTAAYAVAGARASTPTSPAFLIALACIALPALAGVVVAWRKRHQLRRL
>CP026121.1|AXE84383.1|1161783_1162953_-|3-ketoacyl-CoA-thiolase
MRDAVIVEAVRTPIGKGKPGGALAHVHPVELLAHTLRALVERSGVDPALIDDVIGGTVDQVGEQAMNTTRYAVLSAGFPESVPATTVDRQCGSSQQAVHFAAQGVLSGAYDLVVACGVESMSRVPMWSNVPEGKDPFGPGVAQRYPEGLVPQGVSAELIAAKWSIGREQLDAFAVSSHQKAVAAWENGLFDAEVAPLEGVTRDECVRPGSSTDVLAGLKPAYYDPGFAERFPQIEWNITAGNASPLNDGASAVLVTSSETAARLGLRPLARLHSFAVTGSDPLLMLTGVVPATEKVLRRASLTLDDIDLFEVNEAFSSVVLAWQQETGADLGRVNVHGGAIALGHPLGASGTRLTTTLVHAMRERGARYALQTMCEAGGLANAMVLERV
>CP026121.1|AXE84384.1|1163046_1163517_+|putative-HTH-type-transcriptional-regulator-YtcD
MAASKDPRPCSIADTLALVGEKYSLLVLREVCLGNGRFDQLVRNIGAPRDILATRLRRLVDAGILTKRPYSERPQRFEYRPTQAGLELEPVLLTLMAWGDRHLRTDGDRPMVVEHSCGRPLAPAVTCRACGDEVRHEDLTARPQAPGWTVTGPTAA
>CP026121.1|AXE84385.1|1163676_1164552_+|Undecaprenyl-diphosphatase
MSWFESLILGLVQGLTEFLPVSSSAHLRLTAAFSGWEDPGAAFTAITQIGTEAAVLIYFRKDIGRIISAWTRSLTNKALRSDPDARMGWLVIVGSIPIGVLGVTLKDQIEGPFRDLRITATMLIGMGIVLGVADRLAARDESGGRHRAPKQRKALEDLGVRDGLIYGVCQAMALIPGVSRSGATISGGLFMGYKREAAARYSFLLAIPAVLASGLFELKDATEGGHVSWGPTIFATVIAFAVGYAVIAWFMKFISTKSFMPFVYYRIALGIVIIALVSMGALSPHAAESAG

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Crispr_ID: CP026121_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026121_6

3037159-3037273

Orphan

Consensus_repeat	Method
TCGGGCCGGGATGTGGTTGACCGGCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026121_6

>merge|CP026121|6|3037159-3037273|CRISPRCasFinder
TCGGGCCGGGATGTGGTTGACCGGCGTCGCCATCGGACGCCAACGGGTTGGGCGGCGAGAGAACGCCGTCAACCTCAGACGCCGCGTCGGGCCGGGATGTGGTTGGCCGGCGTCG

>CP026121|6|4|3037159-3037273|CRISPRCasFinder
TCGGGCCGGGATGTGGTTGACCGGCGTCG	CCATCGGACGCCAACGGGTTGGGCGGCGAGAGAACGCCGTCAACCTCAGACGCCGCG
TCGGGCCGGGATGTGGTTGGCCGGCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026121.1\|AXE86065.1\|3040912_3042142_+\|FAD-dependent-urate-hydroxylase	unknown	unknown	gnl\|CDD\|169028
CP026121.1\|AXE86067.1\|3042960_3043383_+\|SnoaL-like-domain-protein	unknown	unknown	gnl\|CDD\|378915
CP026121.1\|AXE86063.1\|3039054_3039540_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE86061.1\|3035876_3036926_+\|HTH-type-transcriptional-regulator-GalS	unknown	unknown	gnl\|CDD\|224525
CP026121.1\|AXE86068.1\|3043711_3043801_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176189
CP026121.1\|AXE86062.1\|3037520_3038387_+\|Amidohydrolase	unknown	unknown	gnl\|CDD\|368185
CP026121.1\|AXE86057.1\|3031353_3032310_-\|Integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|366234
CP026121.1\|AXE86058.1\|3032411_3033248_-\|Inosose-isomerase	unknown	unknown	gnl\|CDD\|224007
CP026121.1\|AXE86054.1\|3029405_3029942_+\|Secreted-effector-protein-pipB2	unknown	unknown	gnl\|CDD\|224276
CP026121.1\|AXE86052.1\|3027390_3028434_+\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE86060.1\|3034410_3035562_-\|1,5-anhydro-D-fructose-reductase	unknown	unknown	gnl\|CDD\|223745
CP026121.1\|AXE86071.1\|3045993_3047214_-\|6-hydroxynicotinate-3-monooxygenase-precursor	unknown	unknown	gnl\|CDD\|223727
CP026121.1\|AXE86059.1\|3033244_3034414_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368783
CP026121.1\|AXE86055.1\|3029917_3030334_-\|HTH-type-transcriptional-regulator-ZntR	unknown	unknown	gnl\|CDD\|133388
CP026121.1\|AXE86070.1\|3045060_3045954_-\|Putative-aminoacrylate-hydrolase-RutD	unknown	unknown	gnl\|CDD\|366166
CP026121.1\|AXE86069.1\|3044008_3044968_-\|NADPH-dependent-FMN-reductase	unknown	unknown	gnl\|CDD\|377026
CP026121.1\|AXE86064.1\|3039777_3040572_+\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE86053.1\|3028809_3029358_+\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE86066.1\|3042193_3042916_+\|Transcriptional-regulator,-TetR-family	unknown	unknown	gnl\|CDD\|366102
CP026121.1\|AXE86056.1\|3030438_3031275_+\|tartronate-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|224995

Protein	Function_ID	Function_description	E-value
CP026121.1\|AXE86065.1\|3040912_3042142_+\|FAD-dependent-urate-hydroxylase	gnl\|CDD\|169028	PRK07588, PRK07588, FAD-binding domain.	6.18211e-65
CP026121.1\|AXE86067.1\|3042960_3043383_+\|SnoaL-like-domain-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.000120439
CP026121.1\|AXE86061.1\|3035876_3036926_+\|HTH-type-transcriptional-regulator-GalS	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	9.18847e-100
CP026121.1\|AXE86068.1\|3043711_3043801_-\|hypothetical-protein	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.70177e-06
CP026121.1\|AXE86062.1\|3037520_3038387_+\|Amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	1.01932e-37
CP026121.1\|AXE86057.1\|3031353_3032310_-\|Integrase-core-domain-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.83414e-18
CP026121.1\|AXE86058.1\|3032411_3033248_-\|Inosose-isomerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	8.60428e-35
CP026121.1\|AXE86054.1\|3029405_3029942_+\|Secreted-effector-protein-pipB2	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	4.00835e-19
CP026121.1\|AXE86071.1\|3045993_3047214_-\|6-hydroxynicotinate-3-monooxygenase-precursor	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	3.6908e-34
CP026121.1\|AXE86059.1\|3033244_3034414_-\|hypothetical-protein	gnl\|CDD\|368783	pfam06187, DUF993, Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function.	0
CP026121.1\|AXE86055.1\|3029917_3030334_-\|HTH-type-transcriptional-regulator-ZntR	gnl\|CDD\|133388	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.76612e-46
CP026121.1\|AXE86070.1\|3045060_3045954_-\|Putative-aminoacrylate-hydrolase-RutD	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	7.22982e-16
CP026121.1\|AXE86069.1\|3044008_3044968_-\|NADPH-dependent-FMN-reductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	6.1816e-14
CP026121.1\|AXE86060.1\|3034410_3035562_-\|1,5-anhydro-D-fructose-reductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.77953e-52
CP026121.1\|AXE86066.1\|3042193_3042916_+\|Transcriptional-regulator,-TetR-family	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.07282e-10
CP026121.1\|AXE86056.1\|3030438_3031275_+\|tartronate-semialdehyde-reductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	9.86193e-30

>CP026121.1|AXE86061.1|3035876_3036926_+|HTH-type-transcriptional-regulator-GalS
MTVTLADVAARAQVSPATVSRVLNGNYPVAASTRERVLKAVDELDYVLNGPASALAAATSDLVGILVNDIADPFFGIMASAIQAEIGGPGGRAGGERLAVVCNTGGSPERELTYLTLLQRQRAAAVVLTGGAIEDAAHQAAMDAKVRKLADAGTRVVLCGRPPAPETGAIALTFDNRGGGQELTEHLIGLGHRRLGYIAGPEERTTTRHRLEGHRAALAAHGIEEDPRWTVHGRYDRRSGYEATLELLRRDPSLTAVVAANDSVALGACAALRDSGLRIPEDVSVAGFDDLPFSIDAVPSLTTVRLPLAEAGARAGRIAMGREEAPPGGIASVRGELMVRGSSGVPRVS
>CP026121.1|AXE86060.1|3034410_3035562_-|1,5-anhydro-D-fructose-reductase
MTRKTVRIAMNGVTGRMGYRQHLVRSILALREQGGLDLGDGTVLWPEPILVGRREHALRALAEQHGLEHVSTDLDAVLADETVDIYFDAQVTSAREEALKKAIAAGKHIYTEKPTATGLEGALDLARLADEAGIKHGVVQDKLFLPGLLKLKRLIDGGFFGRILSVRGEFGYWVFEGDWQAAQRPSWNYRAEDGGGIVVDMFPHWEYVLHELFGRVKSVQAIATTHIPERWDENGKPYDATADDAAYGIFELDGGAIAQINSSWAVRVNRDELVEFQVDGTEGSAVAGLRNCRVQHRSATPKPVWNPDIPVTEVFRDQWQEVPDNQDFDNGFKAQWELFLKHVYADAPYHWDLLAGARGVQLAELGLKSSAEGRRLDVPEISL
>CP026121.1|AXE86059.1|3033244_3034414_-|hypothetical-protein
MTIRLPDSGGTLRTYEPRTEPLAVTPGTPFTSRTVFSAAHVVADPYADVSPDSPAAVDWDATLAFRRHLWSHGLGVAEAMDTAQRGMGLDWAGAAELIRRSAAEAKSVGGLIACGVGTDQLPATEIGHPYSLAEIRAAYEEQLALVEESGAQAILMASRALAAVAKGPEDYLEVYGHLLRQASEPVILHWLGPMFDPALEGYWGATDLDAATRTFLDVIAAHPDKVDGIKVSLLDAQREIDIRRRLPQGVRCYTGDDFNYPELIAGDDQGFSHALLGIFDPLGPLAAEAVRVLDTGDVRGFRGLLDPTVELSRHLFQTPTRFYKTGVVFLAWLAGHQSHFTMVGGLQSARSLPHFAKAYELADGLGLFPDPKLAEERMKTLLSVYGVNQ
>CP026121.1|AXE86058.1|3032411_3033248_-|Inosose-isomerase
MSTTGLDRFSINQMTVKQLSMPELVDGCGRLGIRNVGLWREPVQSYGLHATAKLVRDAGLTVTTLCRGGFFTAIDPGERAEALADNRRAIDEAATLGTDTLVLVSGGLPAGSKDLHGARERIADALAELGPYAERHGVRLAIEPLHPMYAADRCVVSTLAQALDLAERFPAHQVGVTVDTYHIWWDDTAPAQIARAGEGGRIHTFQLADWTTPLPEGVLTGRGQIGDGAIDMREWQAHVEAAGYTGAIEVELFNDGLWARDGQEVLAETAARFVEHTR
>CP026121.1|AXE86057.1|3031353_3032310_-|Integrase-core-domain-protein
MSHRNARLTVHGRRLLVERVRAGRPVAHVAAEMGISRVTAHKWIRRWRAEGEPGLHDRPSRPKTTPHRTAPAVEARVCRLRQDRKLGPARLGPILGLPASTVHRVLARHGLNRLALMDRPTGQVIRRYERARPGELVHIDVKKLGRIPDGGGHRMLGRQAGRATRGGMGFDYIHSAVDDHTRLAYSEIHHDEKVATCAGFLIRAAAFFHAHGITRIERVLTDNAWAYRKGLAWKQALAEIGATGKLTRIYRPQTNGKVERFNRTLLDEWAYLRPYTSNTERTAALTDFLHTYNHHRCHTALGGQPPITRVNNPAGQYS
>CP026121.1|AXE86056.1|3030438_3031275_+|tartronate-semialdehyde-reductase
MGQALAGAFLRAGHPTTVWNRTASKAERLVAEGARLAPSVGDAIQAGALTVVCLTDYQAVRELLGADGVDLDGAMLVNLTSGDSAQARETARWAEQRGARYLDGAIMAVPPAIGTAEAMILHSGARADFDEYESVLGALGTVTHLGADHGLASLYDVAGLAMMWSVLNAWLQGTALLRTAGVDAGTFAPFARQIAAGVAEWLPGYAEQIDSGSFPAEVSALETDARAMAHLVEESEAVGVNAELPKLIKAMADRAIAAGHGKEQYPVLIEEFGKPGGS
>CP026121.1|AXE86055.1|3029917_3030334_-|HTH-type-transcriptional-regulator-ZntR
MRIGELSRRTGVNAHQLRYYEAQGLLEADRGANGYREYDDSAVLRVKQIRHLLGAGLSSEDIAYVLPCAVGEAPALPGCPELLTAMRSRLRRLDDQMQRLAQSRDALTAYIEAAERVGEHYPPFDGTAARGQRLPVTT
>CP026121.1|AXE86054.1|3029405_3029942_+|Secreted-effector-protein-pipB2
MDAVGRDLSGADLSGGDWSESWFTGADLRNVNLAGAELYRSDAQGADLSGADLTGASLVRVNLDDAILRHATLDRADLVKASLFGVDAFGASCRGTRFMGASLLEVDFRCADLRDSVFDQNSFKVIIDRRTRLSGASGSVLGPVVLAEEGGSRELSGPELQEWLRERGGCVQVVTGSR
>CP026121.1|AXE86053.1|3028809_3029358_+|hypothetical-protein
MDAYVQCSGDIVTGAGGELVRQENLFRLGASSFADFVTVDLVTHTDVWLPYDLKGRHRQEVYTANGPRLAAVLRDLSEVLGSETDPDDSTYFAKPTETLGYLWASDAENAASFEPLDVGDNASYHAGLAWLERLRSAHDRGLSPSAALAVVSATADTSAGRVAPACEPRTVALAVLRDRSRG
>CP026121.1|AXE86052.1|3027390_3028434_+|hypothetical-protein
MKSCCSSVSSRIPLWTVWRPPGSPRTPASVRPSRRRLTSRLANSTVSRSGALNRSSGASTTRSTRWRARAGKVYRRVMALLNTRRMVDQRSSPEGVRRQATPDDQDTVKPSDSMSESQASWEPSPRVAQLLFVDFDGMPSDPDEVISDGLDGGYRDRSEALRQVLRDSDEDPAGRFLACVALTRWGDAIGYEEVVAAAHSPGAVAWRGASYDRMHGEDDTFGVLADAVGDSIDMVDERGTGAERVRAAEALLGVVDSVQFDRHTNSLLREDLLVASLPVIKEAVARGTTRLKQERISYDLGLQLALTITAARRIDADWALNAARGLVAAKPGERGLEELREDFPEFR
>CP026121.1|AXE86062.1|3037520_3038387_+|Amidohydrolase
MRRFWGRLGVPGLVDVHTHFMPERVLRKVWDYFDTAGPLVGGLEWPITYRTAEAERAALLREFGVRAFTSMLYPHKPGMAAWLNGWAVDFARRTPDCLHTATLFPEPGVADYVREAVEAGARVFKAHVQVGAYDPADELLQPVWGLLAEAGIPVVVHCGSGPAPGKHTGPEPIARVLARHPRLRLIVAHMGMPEYEEFFGLAERYDEVRLDTTMAFTDFGEKLMPFPRRALPRLAALGDRVLLGSDFPNIPYRYLHQLHALERLGLGQQWLRAVCHDNAAELFGLRAG
>CP026121.1|AXE86063.1|3039054_3039540_-|hypothetical-protein
MCPSRHRAFSLTGFGNVSSSDAPGSGCRTGTSTTAKSSPCRSTASSTATARPSVSVSVTVVVVTAVTARTCPPKRTQPPTSMPAGRRIAFTGPAPSTMLWSCSNSPRRSAVRMPAHIRWNSTGSSSSRSPAATAPSISGAGPSKASSTRAVINHRRHRRRR
>CP026121.1|AXE86064.1|3039777_3040572_+|hypothetical-protein
MDDAVVAAMRQAIAEATDASTRRGTFLLWRTGEILRQTPAGRAVKLPSERTLYRLLDKLTRNTHTFSSATTRRSRAHGASVEFGELPVFAPGDVMQIDSTPLDVLVLLDNGVMGKVELTAMIDVATRSLTAAVLRPTTKSVNASVLLARTLTPEPMRPGWVDALKVSRSVLPHRRLLTLDERLEHAAARPVIVPEAIVCDHGKVCDHGKVFISRNFKSSRQAQSPPAQVRHQPLPITGHLHHMVGVRSPSALDQRSSFAVDLHH
>CP026121.1|AXE86065.1|3040912_3042142_+|FAD-dependent-urate-hydroxylase
MEIKDSKDSKDRRALVVGLGISGIATALRLRQIGWTPVIVERAPARRTGGYFIALFGGGRPPAERLGILDNLQDRLPAGGRQYEVDRAGNRKPALGYGDLPGSPWMMVRGDVEEAAFAALPKDVEIRYSTVPTRIEQDAEGVDVTLTDTSDDSTVTERFDLVVGADGLRSTVRSLVFGPHEKYLHRLNYMAVAFQLPAPLSEIHPDDGAILMEPNRSMWLFPFAGSPQTVLLSYHTDDVDAEFTEPPAKRVRAAFGTEPTGRMLGEVLDALDTADDLLFDSVEQTRMDRWHRGRVVLVGDSAWCVSLYAGMGVSMGITGADLLGTMLERHSDVRHALAAWEQTLRPHLDVFQRNGIQQRMFFVPANNKELALRKAMNVGMRLPGTSHLLRQLQARDKAGRLKDTDLALA
>CP026121.1|AXE86066.1|3042193_3042916_+|Transcriptional-regulator,-TetR-family
MTAPTEHDSATATRILAAARELVLKRGVKGLTVAEIAEKAHVGKGTAYLYWGTKHDLLFGLFARDFLAVLDDGIDALSADHEQCRPHRLCPQLVRDSLDRPFVQALQTGDADLLGVLTQQPRSTELLDLAGPAALMYTVLPVWRRYRLVRTDWPLDDQAYALQALMTGFLSNVTRPQTPRSITVSEPYTVISTAVTALLGPEEADPAEVRATAEEGMQLLREKRAAVIALITANQENKES
>CP026121.1|AXE86067.1|3042960_3043383_+|SnoaL-like-domain-protein
MAQATETVRTAGSTNPTETVIDRYIRIFDRTAHEPAAVEELQPLFAPDATVQLDQGLEPVTGLPAIMDFYRNFPSLMADSQRFWTSTVLDDGRIECHWVQAGRGTDGSLVTLAGIEHATVNADGQITDLRNRMVDPTGWA
>CP026121.1|AXE86068.1|3043711_3043801_-|hypothetical-protein
MLLSAAAEAHLLIESRQSTGKVVLLPWAG
>CP026121.1|AXE86069.1|3044008_3044968_-|NADPH-dependent-FMN-reductase
MRLLGLACGQQDGSAEVLLKAALTAAAREGAAVEMVRLTDLSLVTAATADAGDDAAWFCDRLLDADGVIVSSPTYTRSAPGALKLLIDRAFGPRTDVVFVREALARGEHGRAEQEHGRAEQKETRGLLGLDTAPDPRVLKPRVAGFIAVGGCPSPHWRTLTLPTLHALAFPLHMAVADQMEVPTPGGLGGIATDPAAVLRAERLGGAVARQLGLPHDEVRFLGEPGTCPMCHLDLIVLRGGRAECGTCGAAGRFVVEDGDVRVDFSPADTASSVHTLTELEEHYRELLSAAALEPDPQEIDKHAAAFRDSVPVLRPPRP
>CP026121.1|AXE86070.1|3045060_3045954_-|Putative-aminoacrylate-hydrolase-RutD
MPVAEDIEFRVSELTLRGKLFRPTDGPERPPVAILQSGLGGPAESMFAMARGFTDAGLACLIYDHRNTGYSDGEPRQQFDPWQQCRDLRDVITHLTLREDVDPDRIALWGISIGGANSLFTAATDRRVKAVVSVIPPVSGWSARTLQPADTLAELEALIPADRQAQLRGEPAASIRLHGVPEPGDPVMFSDQEGLEFVENMIHQLPSFRNEITISTLDRIYEMEVRAYAERITAPVLMILASKDTVAPVEEAREMYERIPGPKEVIEYPGQHYEILSNHFPEIITRSADWLAATLRG
>CP026121.1|AXE86071.1|3045993_3047214_-|6-hydroxynicotinate-3-monooxygenase-precursor
MPSFHVLIAGGGMGGLCLAQGLRRAGISCTVHESAPGVGRAGYRLHMNGAGGRALQQCLPDNLFELYMQTSRETPRREVMVVLDHQARELGARPHIGPPNDPRRPHTAVNRRTLRQIMGVGLEDIVRYDSTVTGFETDGEKVRVLLDDGTSETGDVLVGADGINSVVRRQLLPDVAVVDTGMRGLYSIAPLTDDLAARLPEALFDGFAIATGPNGAMFAYGVYRPRRPVAEAVAELAPGAAVDPVDPYIMVNLGLPPGSPVAAGAPDLWHSSPETLHTLMRTAVRGWDPALADLVEHVDASTIFPVSTRHLQPAEPWPAGRVTLLGDAIHAMPPSFGSGANTALRDAAALARALERAAHGDTPVAEAVAEYETEMRAEVFPILRASADPRGLDADFLPDDLPVSHT

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Crispr_ID: CP026121_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026121_7

3299231-3299321

Orphan

Consensus_repeat	Method
TGACCCGCGCCCGCCGCCCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026121_7

>merge|CP026121|7|3299231-3299321|CRISPRCasFinder
TGACCCGCGCCCGCCGCCCGGGGGCGGCCGGGGAGTCGGCGGAGGCGGGTCGAAGGTTCAGAGAACGATGACCCGCGCCCGCCGCGCCGGG

>CP026121|7|5|3299231-3299321|CRISPRCasFinder
TGACCCGCGCCCGCCGCCCGGGG	GCGGCCGGGGAGTCGGCGGAGGCGGGTCGAAGGTTCAGAGAACGA
TGACCCGCGCCCGCCGCGCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP026121.1\|AXE86289.1\|3287538_3288060_-\|ECF-RNA-polymerase-sigma-factor-SigL	unknown	unknown	gnl\|CDD\|236605
CP026121.1\|AXE86301.1\|3302004_3304254_+\|Alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
CP026121.1\|AXE86293.1\|3292321_3293197_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
CP026121.1\|AXE86307.1\|3309461_3309653_+\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE86306.1\|3308534_3309224_-\|Cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
CP026121.1\|AXE86292.1\|3290781_3292167_-\|Nitrate/nitrite-transporter-NarK	unknown	unknown	gnl\|CDD\|225133
CP026121.1\|AXE86294.1\|3293338_3294544_-\|Acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|376607
CP026121.1\|AXE86297.1\|3298163_3299186_-\|HTH-type-transcriptional-regulator-BenM	unknown	unknown	gnl\|CDD\|223656
CP026121.1\|AXE86300.1\|3300719_3301928_+\|Major-Facilitator-Superfamily-protein	unknown	unknown	gnl\|CDD\|340863
CP026121.1\|AXE86298.1\|3299363_3300191_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE86304.1\|3306340_3307447_-\|putative-CtpA-like-serine-protease	unknown	unknown	gnl\|CDD\|223864
CP026121.1\|AXE86296.1\|3297024_3298053_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
CP026121.1\|AXE86299.1\|3300204_3300546_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE86295.1\|3294540_3296733_-\|Poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|200584
CP026121.1\|AXE86305.1\|3307575_3308493_-\|Cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|225088
CP026121.1\|AXE86302.1\|3304253_3305225_+\|Catabolite-control-protein-A	unknown	unknown	gnl\|CDD\|224525
CP026121.1\|AXE86288.1\|3286708_3287491_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379219
CP026121.1\|AXE86290.1\|3288411_3289005_-\|CGNR-zinc-finger	unknown	unknown	gnl\|CDD\|227803
CP026121.1\|AXE86303.1\|3305814_3306306_-\|SsrA-binding-protein	unknown	unknown	gnl\|CDD\|376590
CP026121.1\|AXE86291.1\|3289512_3290664_-\|bifunctional-uroporphyrinogen-III-synthetase/response-regulator-domain-protein	unknown	unknown	gnl\|CDD\|235981

Protein	Function_ID	Function_description	E-value
CP026121.1\|AXE86289.1\|3287538_3288060_-\|ECF-RNA-polymerase-sigma-factor-SigL	gnl\|CDD\|236605	PRK09645, PRK09645, ECF RNA polymerase sigma factor SigL.	2.22088e-82
CP026121.1\|AXE86301.1\|3302004_3304254_+\|Alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
CP026121.1\|AXE86293.1\|3292321_3293197_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	3.8418e-06
CP026121.1\|AXE86300.1\|3300719_3301928_+\|Major-Facilitator-Superfamily-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.52997e-15
CP026121.1\|AXE86294.1\|3293338_3294544_-\|Acyltransferase-family-protein	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	4.37544e-13
CP026121.1\|AXE86297.1\|3298163_3299186_-\|HTH-type-transcriptional-regulator-BenM	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.47202e-25
CP026121.1\|AXE86306.1\|3308534_3309224_-\|Cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	3.02973e-123
CP026121.1\|AXE86304.1\|3306340_3307447_-\|putative-CtpA-like-serine-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	7.37453e-69
CP026121.1\|AXE86296.1\|3297024_3298053_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	6.36092e-05
CP026121.1\|AXE86305.1\|3307575_3308493_-\|Cell-division-protein-FtsX	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	1.03948e-57
CP026121.1\|AXE86292.1\|3290781_3292167_-\|Nitrate/nitrite-transporter-NarK	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	6.36629e-115
CP026121.1\|AXE86295.1\|3294540_3296733_-\|Poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|200584	cd10962, CE4_GT2-like, Catalytic NodB homology domain of uncharacterized bacterial glycosyl transferase, group 2-like family proteins. This family includes many uncharacterized bacterial proteins containing an N-terminal GH18 (glycosyl hydrolase, family 18) domain, a middle NodB-like homology domain, and a C-terminal GT2-like (glycosyl transferase group 2) domain. Although their biological function is unknown, members in this family contain a middle NodB homology domain that is similar to the catalytic domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Like SpPgdA, this family is a member of the carbohydrate esterase 4 (CE4) superfamily. The presence of three domains suggests that members of this family may be multifunctional.	1.74575e-86
CP026121.1\|AXE86302.1\|3304253_3305225_+\|Catabolite-control-protein-A	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.80786e-61
CP026121.1\|AXE86288.1\|3286708_3287491_-\|hypothetical-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	8.26859e-06
CP026121.1\|AXE86290.1\|3288411_3289005_-\|CGNR-zinc-finger	gnl\|CDD\|227803	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only].	4.03983e-17
CP026121.1\|AXE86303.1\|3305814_3306306_-\|SsrA-binding-protein	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	3.25447e-86
CP026121.1\|AXE86291.1\|3289512_3290664_-\|bifunctional-uroporphyrinogen-III-synthetase/response-regulator-domain-protein	gnl\|CDD\|235981	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated.	0

>CP026121.1|AXE86297.1|3298163_3299186_-|HTH-type-transcriptional-regulator-BenM
MPAHLDPRLLRAFVTVAEELHFTRAAVRLHLAQQALSRDVRRLERELGAELFVRTTRQVTLTPDGERLLPYARRVLRAQDELLAAFDQARPLLVDLNSPGLVTPRRVLHRARELAPEHELMARYESGLTGAAGELLAGRLDASFGRFAGLDPALRAGLDHQPVRYEPMAIVLPEDHRLAAPAEVPLAELAGETVYAGAGNARTPEWTGLARLLFEGRGIEIAPPAPLAVGEEEFQRVMARTRHPVLAVVGFPAMPSTVSRPLVDPVPLSPVSLVWRRGLTHPAFDALRRAAALLAAEEGWLRRPAGTWVPAGDDVLMRSRDRNDSTRRPHITSACATFDA
>CP026121.1|AXE86296.1|3297024_3298053_-|hypothetical-protein
MTKWREDAQPEWPEAASATGEVPADGMGRDRRVTQVFAGDVRLTERRRPGATEILRGIPRQSEGEADSLAPGTGPRPAVRDPWREPEEAGLPGPGHDPAGHTSDPAGHTSDPAGRTHDPHEVTVQLDAVQLGDGFLRQVKEGAGVGPAPADRPVFVDESGRRSRRFRRIGMVIALACGVYAVVIVATLLSGNSNAPWLPVPGKKEGPPAGQVETPPLPAESAPAGGSGATAPGSTPTTDEVTAPSPGPSALEPVASAGPGRTGTTADPTPTATRTTPAPGTGVTDPGPSEPANPPSPPVSSPTPTGGTTPEPPTETTGTGGDGGTVADGPAATQPIAQTPAA
>CP026121.1|AXE86295.1|3294540_3296733_-|Poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MASRTSRPGPAPRARGGSRRRRLPLRLLLPLLVLVALMAMLMLRGYVHSEILADHRVGPPAANDRVPKDILKGGPVIDTRDGKPAGLELPDHELVLTFDDGPDPMWTPKVLDVLKKHEAHAVFFITGTMASRHPDLVQRMVDEGHEIGLHTFNHPDLSLQSKSRIDWELSQNQLALAGAAGIRTSLFRPPYSSFAHVMDNKSWPVTEYIGSKGYITIVNDTDSEDWRRPGVEKIISNATPKNGEGAIVLMHDSGGDRSQTVAALDRFITGLKDQGYRFDTLTAALDAPSAHTPVAGLEAVKGEAWVFLVQASEKITGVLVAGLAVVGVLVFGRLGLMLILSVAHARRVRRRNFSWGTPVTEPVSVLVPAYNEAKCIEQTVRSLVASDHPIEVLVIDDGSSDGTARIVENLGLPGVRVVRQLNAGKPAALNRGIANARHDIIVMMDGDTVFEPTTVRELVQPFGDPRVGAVAGNAKVGNRDSLIGAWQHIEYVMGFNLDRRMYDVLRCMPTIPGAVGAFRRSALERVGGMSDDTLAEDTDITMALHRDGWHVVYAEKAIAWTEAPESVQQLWSQRYRWSYGTMQAIWKHRRALVDRGPSGRFGRVGLPLVSMFMVVAPLLAPLIDVFLLYGLVFGPTEKTIGAWLGVLAVQGVCAAYAFHLDKERMTHLISLPLQQLLYRQLMYVVLLQSWITALTGGRLRWQKLRRTGAVGLPGGGSPTPQRQMDGRPVA
>CP026121.1|AXE86294.1|3293338_3294544_-|Acyltransferase-family-protein
MTTAPVTTAPRREQTPSARPGRDRYFDLLRALALFRVVLYHLTGWAWLPLVFPSMGVMFALAGNLMARSLKRPPVQVIRGRLRRLLPPLWLLGVVGVTGMVLQGWGPDADGHPGWWWLHLTFWIVPFSDPPYAEGLPGVHGFIGENWAADLAGPLWYIRAYLWYVLLSPFLLKALRALPVVTLSAPIVLAVAFEQGWLTLPGERIPSALTDFSTFGACWILGMAHQEGILRRLPRYIVPSVAPVIALAGLWYALHHDFGTGNDLDSMPLAQALWSFGTVLLLLHVSPSWSEWPGRLRRWAGAIGLLNSRAVTIYLWHNICILVAATLWDRLWGFPVLEQNVPGLLESPWPVLALVWALIGACVLAFGWMEDLAAKQKPRLWPGSEPRVRVRGGRRRSAPDG
>CP026121.1|AXE86293.1|3292321_3293197_-|hypothetical-protein
MSKRQTRKMLRLMASGEPVELTSPMASVKKLARLAFVAQQFGYEYADVRQSSGRNGALTMLIVPDPGPQARARAAQNWARYPNAADGVSLPPLVPDEFELLKARINFDLTGRHAEKRMWYGALGATVGSVILGFRFGGGSFDFLVAGVLWLLFMGIFGIGLVVTRKRNAKFAARLRASGFVPVTDQNGRTRYLPPGAQLPGQGNPFAGGPYGGVPGGPAGVPGPYAQPAPYPGRPAPGPYGAQPAPGPYGAQPAPGPYPGQPAPGPYGAQPPAPHNPPYPQQNPHWQPPRP
>CP026121.1|AXE86292.1|3290781_3292167_-|Nitrate/nitrite-transporter-NarK
MTGPGTAPAPPSRGGRWIQHWDPENETFWQETGEKIARRNLFFSVLSEHIGFSIWTLWSVLVLFMGPEYGLTPADKFMLTSMVTLVGAVVRVPYTFAVAIFGGRNWTIISAGMLLIPTVAAFLVMEPGTSFSTFLLVGLLAGVGGGNFASSMTNINAFFPLRKKGWALGLNAGGGNIGVPVIQLAALAIIGAGGGPRVLLGVYIPLIVVAAVMAALFMDNLENVKNDTGAAKDAARDAHTWIMSVLYIGTFGSFIGYSFAFGQVLQNQFGRTPLQAAYVTFLGPLLGSLIRPVGGWLADRYGGAKISLWNYVAMGAATAVLIGASMEKSLALFTAAFVVLFVLSGLGNGSTFKMIPGIFQNKALAKGLKGEEAAAYGRRLSGASMGLIGAVGALGGVGINLAFRQSFLSYGSGTGAFVAFLAFYAVCFTVTWAVYLRRTAPRVPETSAASETKPQLSYAKV
>CP026121.1|AXE86291.1|3289512_3290664_-|bifunctional-uroporphyrinogen-III-synthetase/response-regulator-domain-protein
MYEEEQRPDHGPLAGFTVGVTAARRADELGALLQRRGAAVLHAPALRIVPLADDSELLAATKEIIEQLPDIVVATTAIGFRGWVEAADGWGLGEELLSRLAGVRILARGPKVKGAVRAAGLTEEWSPSSESMAEVLDRLLEEGVEGLRIAIQLHGEPLPGFVEALREGGAEVVGVPVYRWMPPEDLGPVDRLLDATVSRGVDALTFTSAPAAASFLSRAEERGLLPEVLAALNHDVLPACVGPVTALPLQSRGIDTIQPERFRLGPLVQLLCQELPARARSLPIAGHRVEIRGHAVLVDGDLKPVPPAGMSLLRALSRRPGWVVSRADLLRALPGSGRDEHAVETAMARLRTALGTPKLIQTVVKRGYRLALDPAAETKYADA
>CP026121.1|AXE86290.1|3288411_3289005_-|CGNR-zinc-finger
MALGTATAPYELRFDAGRICLDLLSTTHPEERLDSVDVLRAWITGSGLVPAGTSLAHTDAGWLVAFRELRGQIDRLVRGRPRPGVPAYDLALARVNDLARTAPPAPRAVRGEDGDLVRRLDGPPGRAALLAAVARDAVDLLTDPAARAALRECAGDNCPIVYLDTSRGRRRRWCSSEVCGNRERVARHRRRAALARA
>CP026121.1|AXE86289.1|3287538_3288060_-|ECF-RNA-polymerase-sigma-factor-SigL
MSQPSEPDEELMRALYREHAGPLLAYVLRLVAGDRQRAEDVVQETLIRAWKNAGQLNRATGSVRPWLVTVARRIVIDGHRSRQARPQEVDPSPLEVIPAEDEIDKALWLMTLSDALDDLTPAHREVLVETYFKGRTVNEAAETLGIPSGTVRSRVFYALRSMKLALEERGVTA
>CP026121.1|AXE86288.1|3286708_3287491_-|hypothetical-protein
MSGPMQESPVPNEHETVGAYALGILDDAEATAFEAHLATCEWCAQQLDELAGMEPMLAALADLPGSGSTPAIGESLSAKPRPRMVEKLVDEVAERRAQKRRRSFYMVAAAGALIIGGPFVAVATNGGGDGGGAENRPLAASPAKEAFDGISDKISATDPNTKVTATVAVQKKDWGTGVVTELKNVKGPLKCALVAVGKNGERETLSSWSVPEWGYGLPDARTEKAKQPLYVQGGAAFEPNEIDHFEVVTFDGKRLVEVDA
>CP026121.1|AXE86298.1|3299363_3300191_-|hypothetical-protein
MYDKGIEGTGRHRAPARDFITPLTPPDPTWDPAEELAFILEEALGEQAARIPGPRDEEPAEAAEPAPAPGAHMRRLQDITEELPPVRDVPRRHRKVRTRRAPGGLLRTTSFLVAALAAVIASAVSLLSGMVAYDPLRLVAVSPAERNLRTWWPLLVYGPWLVASLSVLRAALHQRRAAHSWCVVVVFSCVAVLLCVAQAPRTVLGTAAAALPGLAALACFQQVVRQITLTRPPLRPVPRHRVGPGAPKEAPAGETETAAGGEATGESETPGRGDS
>CP026121.1|AXE86299.1|3300204_3300546_-|hypothetical-protein
MLLMAHGKDAHWGKSFTRLPRIRRSGEAVSRYMTEATRKDGWAVTLGPYTYIPAPAHSSATVNGTLTKAGCPVTLQVTEPVLRDFIDAMSTLEKDLARRWISATEWPAFALAE
>CP026121.1|AXE86300.1|3300719_3301928_+|Major-Facilitator-Superfamily-protein
MPPLSPYRRLFRLPGARAFTAGNLIARLPMGMFSVSAVVMIAGTRGSYALAGAVTATGLAATAVVAPWTARLVDRYGQARVALPATVIAVLGSLALLLCVRHDAPDWTLFASYAATATTPNTGGMSRARWAHLLAGDAEALHTANSFEQAVDELCFMLGPVLAAFLCGAFFPEAGTLAGAVLLLTGMVLFTSRRATEPPVRERIPAKAPLRAPGMPPLLTVCLAMGGIFGSTEVVTLAFADARGHSSAAGAVLALQAAGSCAAGLVYGAVKPAGPAAARLSWCVATMAALLTLPLLAAALTGSLPLLAGALLVAGMATAPTMVTTMTLVQQRTPEGRLNEGMTLAVTGLLGGIAGGSALGGWMVEHVSATAGYGVPVTAAALALALSLTVASNRFTLTCTTH
>CP026121.1|AXE86301.1|3302004_3304254_+|Alpha-xylosidase
MKFTDGYWLLREGVTAAYPAEVLDVVESDGTLEMHAPTRPIRSRGDLMTGPVLTVTAHTPMPDVIGLTLTHLTGGRPQGPAFGISASETAPQLAYDDEHATLTSGDLTVRLARGGPWQVEFLAHGRTLTGSGHKSTGIMRDPDGAHHLREQLVLKVGTSVYGLGERFGPLVKNGQVVDIWQADGGTCSEQAYKNVPFYLTDAGYGVFVDHPGKVSFEVASEVVSRVQFSAETQELTYYVIYGPTPKDILRKYTALTGRPALPPAWSFGLWLSTSFTTSYDEETVTSFIEGMRERELPLSVFHFDCFWMREYHWCDFRWDERVFPDPEGMLARLKARDLRVSVWINPYIAQRSPLFAEGKALGHLLRRPDGSVWQWDMWQPGMALVDFTSPAARDWYASKLQALLAQGVDCFKTDFGERVPLDVVWSDGSDPERMHNYYTYLYNRTVFEVLREHRGEAEAVLFARSATAGSQRFPVHWGGDCEATYESMAESLRGGLSLGLSGFGFWSHDIGGFEGTPTPALFKRWLAFGLLSSHSRLHGSSSYRVPWLFDEESVEVARHFTRLKLRLMPYLYEAARTAHTDGVPMMRAMVLEFPDDPGCAHLERQYMLGPDLLVAPVFSDEGDVSYYVPEGTWTHFVTGETVTGPRWVRERHDFLSVPLLVRPGAVLPVGARDDRPDYDHADGVTLRAYGLRPGEETTVRVGEVTFTVVSDAGTLRASCSDPSAPWALACGDREVRAAAGTGTLTLEPA
>CP026121.1|AXE86302.1|3304253_3305225_+|Catabolite-control-protein-A
MVRITDVARRAGVSPSTVSYALSGKRPISPETRRRVEAAARELGYRPRSDAPPHGGVKVLAVAAPLRGGTDVPAMMRLTQSVVTAARAYDHDVLLLTHEEGLARVRGSALVDALLVTDIALHDPRLPLLRSVDPPVVLLGLPADPRGLACVDLDYRAAGEACVDHLAGLGHRSVALAGSPPEVYLRETASARRLVEGFTAAAHRHGVASSVHPTEPSPPAARALADRLLRAHPAPTAVIVQNDPLLDPLLTALRHLGLRIPEDLSLMAVGTDIPPTITSVTVPSAELGTHAVDLLLRNDSGTPAPQTALLPPRLTERASTSHT
>CP026121.1|AXE86303.1|3305814_3306306_-|SsrA-binding-protein
MVGTMAKEKGRKLIAQNKKARHDYHIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQMDGHEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHRAEIDKLESKSGETGHTIVPLALYFKDGRAKVEIALAKGKKEYDKRQTLREKQDRREAERVISAVRRKERA
>CP026121.1|AXE86304.1|3306340_3307447_-|putative-CtpA-like-serine-protease
MLFTSVLVAGAATGALPQADRKSPPDEAGSAASAGHHAAVTRAAEEALADGKSPMEAAKRAVSRSGDRWGAVYSEGEYEEFEDALDGQYTGVGLWARSERNGRIAVTKVRAGSPAAAAGIRPGDLLRSVDGRPADGRPVTEVVSLLRGDAIDAPAGTTVRLGLERGTRAWTETLRRTQLSTDSVTVRQVAGPVTVIRVATFTKGSGDQIRKALRQAPPGGVVLDLRGNSGGLVTEAVTAASAFLDGGLVATYGVDGEQRVLHAEPGGDTTRPLVVLVDGGTMSAAELLTGALQDRGRALVVGSRTFGKGSVQMPSRLPDGSVAELTVGHYRTPSGRGVDGRGITPDLEADEGALQRAESVLRGLATPS
>CP026121.1|AXE86305.1|3307575_3308493_-|Cell-division-protein-FtsX
MRAQFVLSEIGVGLRRNLTMTFAVIVSVALSLALFGGSLLMSDQVNTMKGYWYDKVNVSIFLCNKSDAESDPNCAKGAVTDDQKKQIKADLEKMNVVQTVTYESQDQAYKHYKEQFGDSPLASSLTPDQMQESYRIKLKDPQKYQVIATAFDGRDGVQSVQDQKGILDNLFGLLNGMNWAARAVMALMLVVALMLIVNTVRVSAFSRRRETGIMRLVGASGFYIQAPFIMEAAVAGLIGGTLACAFLLIARYFIIDHGLALSEKLNLINFIGWDAVLTKLPLILATSLLMPALAAFFALRKYLKV
>CP026121.1|AXE86306.1|3308534_3309224_-|Cell-division-ATP-binding-protein-FtsE
MIRFDNVSKVYPKQTRPALRDVSLEVEKGEFVFLVGSSGSGKSTFLRLILREERCSHGQVHVLGKDLARLSNWKVPQMRRQLGTVFQDFRLLPNKTVGENVAFAQEVIGKSRGEIRKSVPQVLDLVGLGGKEDRMPGELSGGEQQRVAIARAFVNRPKLLIADEPTGNLDPQTSVGIMKLLDRINRTGTTVVMATHDQNIVDQMRKRVIELEKGRLVRDQARGVYGYQH
>CP026121.1|AXE86307.1|3309461_3309653_+|hypothetical-protein
MTYDRLVCANCAAPVSEGRCPVCRANRERLQQENFLANLNPMALIALLTVLIAAVALLAHQTA

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Crispr_ID: CP026121_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026121_8

4388896-4388972

Orphan

Consensus_repeat	Method
CGCTACGGCGACCAGGGGCCGTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026121_8

>merge|CP026121|8|4388896-4388972|CRISPRCasFinder
CGCTACGGCGACCAGGGGCCGTCGCCGTCCGAGAAGTCCTGACCCCTGCGGCGCTACGGCGACCAGGGGCCGTCGCC

>CP026121|8|6|4388896-4388972|CRISPRCasFinder
CGCTACGGCGACCAGGGGCCGTCGCC	GTCCGAGAAGTCCTGACCCCTGCGG
CGCTACGGCGACCAGGGGCCGTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP026121.1\|AXE87286.1\|4384181_4384919_-\|Tetracycline-repressor-protein-class-B	unknown	unknown	gnl\|CDD\|367243
CP026121.1\|AXE87300.1\|4402515_4403343_-\|AB-hydrolase-superfamily-protein-YdjP	unknown	unknown	gnl\|CDD\|131480
CP026121.1\|AXE87294.1\|4394292_4394706_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE87288.1\|4386720_4387698_+\|Quercetin-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|224655
CP026121.1\|AXE87296.1\|4395305_4396922_-\|Methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
CP026121.1\|AXE87283.1\|4380782_4382609_-\|Acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
CP026121.1\|AXE87280.1\|4377244_4379062_+\|Thiol-disulfide-oxidoreductase-ResA	unknown	unknown	gnl\|CDD\|271321
CP026121.1\|AXE87297.1\|4397011_4398655_-\|von-Willebrand-factor-type-A-domain-protein	unknown	unknown	gnl\|CDD\|378410
CP026121.1\|AXE87298.1\|4399336_4401427_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|253386
CP026121.1\|AXE87284.1\|4382744_4383569_-\|Dioxygenase	unknown	unknown	gnl\|CDD\|239540
CP026121.1\|AXE87287.1\|4385057_4386560_+\|Antiseptic-resistance-protein	unknown	unknown	gnl\|CDD\|184957
CP026121.1\|AXE87291.1\|4391254_4393018_+\|Aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
CP026121.1\|AXE87281.1\|4379074_4379323_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE87279.1\|4376822_4377215_+\|Cupin-domain-protein	unknown	unknown	gnl\|CDD\|380355
CP026121.1\|AXE87295.1\|4394809_4395175_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377953
CP026121.1\|AXE87292.1\|4393107_4393407_+\|Putative-tartrate-transporter	unknown	unknown	gnl\|CDD\|340877
CP026121.1\|AXE87299.1\|4401470_4402472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377028
CP026121.1\|AXE87285.1\|4383701_4384169_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377787
CP026121.1\|AXE87282.1\|4379409_4380708_-\|putative-M18-family-aminopeptidase-2	unknown	unknown	gnl\|CDD\|235073
CP026121.1\|AXE87293.1\|4393797_4393929_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026121.1\|AXE87292.1\|4393107_4393407_+\|Putative-tartrate-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.94798e-20
CP026121.1\|AXE87288.1\|4386720_4387698_+\|Quercetin-2,3-dioxygenase	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.60691e-66
CP026121.1\|AXE87296.1\|4395305_4396922_-\|Methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
CP026121.1\|AXE87283.1\|4380782_4382609_-\|Acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	0
CP026121.1\|AXE87280.1\|4377244_4379062_+\|Thiol-disulfide-oxidoreductase-ResA	gnl\|CDD\|271321	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins. NHL repeat-containing protein 2 (NHLRC2) and related bacterial proteins; members of this eukaryotic and bacterial family are uncharacterized, the NHL repeat domain is found C-terminally of a thioredoxin domain. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	1.06763e-170
CP026121.1\|AXE87297.1\|4397011_4398655_-\|von-Willebrand-factor-type-A-domain-protein	gnl\|CDD\|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	1.10652e-45
CP026121.1\|AXE87298.1\|4399336_4401427_+\|hypothetical-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	0
CP026121.1\|AXE87287.1\|4385057_4386560_+\|Antiseptic-resistance-protein	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	3.75219e-65
CP026121.1\|AXE87291.1\|4391254_4393018_+\|Aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
CP026121.1\|AXE87284.1\|4382744_4383569_-\|Dioxygenase	gnl\|CDD\|239540	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.	5.13246e-64
CP026121.1\|AXE87279.1\|4376822_4377215_+\|Cupin-domain-protein	gnl\|CDD\|380355	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain. This family includes bacterial proteins homologous to YdbB, a Bacillus subtilis protein of unknown function. It also includes protein Nmb1881 From Neisseria meningitidis, also of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.92945e-44
CP026121.1\|AXE87295.1\|4394809_4395175_-\|hypothetical-protein	gnl\|CDD\|377953	pfam08000, bPH_1, Bacterial PH domain. This family contains many bacterial hypothetical proteins. The structures of Structure 3hsa and Structure 3dcx show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response.	6.70945e-61
CP026121.1\|AXE87286.1\|4384181_4384919_-\|Tetracycline-repressor-protein-class-B	gnl\|CDD\|367243	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain.	1.99677e-14
CP026121.1\|AXE87299.1\|4401470_4402472_-\|hypothetical-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	2.75334e-22
CP026121.1\|AXE87285.1\|4383701_4384169_+\|hypothetical-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.000133821
CP026121.1\|AXE87282.1\|4379409_4380708_-\|putative-M18-family-aminopeptidase-2	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
CP026121.1\|AXE87300.1\|4402515_4403343_-\|AB-hydrolase-superfamily-protein-YdjP	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	1.41836e-42

>CP026121.1|AXE87288.1|4386720_4387698_+|Quercetin-2,3-dioxygenase
MPAVTVENPLTLPRVTAPADAVARPVLAVTTAPSGFEGEGFPVRRAFAGINYRHLDPFIMMDQMGEVEYAPGEPKGTPWHPHRGFETVTYIIDGIFDHQDSNGGGGTITNGDTQWMTAGSGLLHIEAPPEHLVMSGGLFHGLQLWVNLPAKDKMMAPRYQDIRGGSVQLLTTPDGGALLRVIAGELDGHQGPGITHTPITMIHATLAPGAEITLPWREDFNGLAYVLAGRGSVGSERRPVHLGQTAVFGAGSSLTVRADEKQDSHTPDLEVVLLGGQPIREPMAHYGPFVMNTKDELMQAFEDFQKGRLGTVPAVHGMTAGGPQG
>CP026121.1|AXE87287.1|4385057_4386560_+|Antiseptic-resistance-protein
MEARNPRRWWILIVLCLSTLVLVVDNMALTVAVPALTEDIGASAQETQWILDSYVLVFAGLLLTSGSLGDRFGRRKVMLIGLLLFGAASLGAVFCSGPGELIAVRIAMGVGGALIMPSTLSILITVFDEDERPKAMAAWGSVSMLGLVGSPVLGGVLIDHFAWQAIFLINVPIVALALLAGVLLMPESKAPWQKPDPLGAVLSAVGMTALVWWIIEIPQHGAFETRSLLVLAVAVLALAGFVVWENVTSAPMVPLVLFRHRDFSGGSLSLALVQIGNAGLLLVLTQYLQFVLGWSAVKAGLAFLPLAVAALAGNAAGAQLAVKAGNRFVILGGMLLMAASFGLLTTLTADSGFTVPAVALGILGLGAGLAMPAAVAALMGTIPEEKAGVGSALNDTIQQSGTALGIAILGSLLSGGYRDEMPAGAPGQARESIGGALAVAGGDAGLVRAAREAFTASMSTTFTISAVGVLAAAVVATLVMRDRKAAEPSGAGSEERELVA
>CP026121.1|AXE87286.1|4384181_4384919_-|Tetracycline-repressor-protein-class-B
MSRSKATEKNPIPSVWTREQRRTDQPALSRDAIVREAIAMLDADGIEALSMRKLGARLNAGATSLYRHVATKDELMELAVDEVAAEIHVPPADSPDWRAAVTEAAGSFRATALRHPWLTLVLGQAGLAYLGPNYMSFSERLAALFTAAGFPEPSRAIDAVFSYVIGMSTTEAAWLTTVARSGESEAEFVARLLPTAQQVSAGYDHLAAAGPETSAQAADPAKLRDDKFAYGLEVVLDGLALRLPG
>CP026121.1|AXE87285.1|4383701_4384169_+|hypothetical-protein
MYGYDQTAGAQQQYAPPQQPMSGGYGQQPPLYPEPSPPSLADAVRAFTTGQMAAEDFQQVFATSKVYCPRGDNPGFLALHNTQQPVIPMFTTLKELRRYAGKESKYFVITGAEVLDLLPTGYGFVLDMEGEHRMVFDAKAVEQMVEFAMRRMYGG
>CP026121.1|AXE87284.1|4382744_4383569_-|Dioxygenase
MTERRDEGPHEHDRGLSHDLPVLARRRMIRLMAGASLIPLVGCASREDTPASSSSSPASSSSSAACAEIPEETAGPFPGDGSNGVNVLKESGVVRSDITKSFGDSAGGTAEGVPLTITLTVVDAASGCGTPKKGAAVYLWHCDREGNYSLYSEGVTDENYLRGVQETDDQGRVTFTSVFPGCYSGRWPHVHFEVYGSLADATAATSVTNTSQLAFPKDVCDTVYATDGYDASVRNLSSLSLETDNIFSDGHAQQLATVRGSTGEGYTATLTVPV
>CP026121.1|AXE87283.1|4380782_4382609_-|Acyl-CoA-dehydrogenase
MGHYKSNLRDIEFNLFEVLGRDKVYGTGPFEEMDVETAKSILEELTRLSENELAESFADADRNPPVFDPETNTAPVPASFKKSYQAFMDSEYWRLGLPEEIGGTTAPRSLIWAYAELILGANPAVWMYSSGPAFAGILFEEGNEVQKHIAKIATEKQWGSTMVLTEPDAGSDVGAGRTKAVQQEDGSWHIEGVKRFITSGEHDMSENILHYVLARPEGAGPGTKGLSLFLVPKYLFDFETGELGERNGVYATNVEHKMGLKASNTCEMTFGDQHPAKGWLIGDKHDGIRQMFRIIEFARMMVGTKAISTLSTGYLNALEYAKERVQGPDLANFMDKTAPKVTITHHPDVRRSLMTQKAYAEGMRALVMYTASIQDAIQIKEAAGEDAATEHALNDLLLPIVKGYGSEKGYEQLAQSLQTFGGSGFLQEYPIEQYIRDSKIDTLYEGTTAIQGQDFFFRKIVRNQGAALNSLAEDIKKFLALGTGGEELAGAREHLAKAAVELEAIVGLMLTDLAATEQDVKNIYKVGLNTTRLLMASGDVVVGYLLLKGAAVAAEKLETASAKDKAFYTGKIAAAKFFAANVLPGVTLARKVAEGVELDLMELDEAAF
>CP026121.1|AXE87282.1|4379409_4380708_-|putative-M18-family-aminopeptidase-2
MTEPARFDRGHTDDLMTFLAASPSPYHAVATAAERLEKAGFRQVAETDAWDGTSGGKYVLRGGAIIAWYVPEGAAPHTPFRIVGAHTDSPNLRVKPLPDSGAHGWRQVAVEIYGGPLLNSWLDRDLGIAGRLTLRDGSTRLVNVDRPLLRVPQLAIHLDRSVTADGLKLDKQRHMQPVWGLGNDVRDGDLIAFLEETAGIPAGEVTGWDLMTHSVEPPAYLGRDRELLAGPRMDNLLSVHAGTAALAAVASGASKPASIPVLAAFDHEENGSQSDTGADGPLLGNVLERSVFARGGSFEDRARAFAGTVCLSSDTGHAVHPNYAERHDPTHHPRVNGGPILKVNVNNRYATDGSGRAEFAAACERADVPFQSFVSNNSMPCGTTIGPITAARHGIRTVDIGVAILSMHSARELCGADDPFLLANALAAFLEG
>CP026121.1|AXE87281.1|4379074_4379323_-|hypothetical-protein
MGLGGCIILIAVGAILTFATDWDMQGVNLDLVGVILMIVGLIGVTTFSSIARRRRVVVPPTTPVVDDGRHRTRDGYSDGYGV
>CP026121.1|AXE87280.1|4377244_4379062_+|Thiol-disulfide-oxidoreductase-ResA
MNHSAPRRARVRAPELTGKGGWLNTGGQRYTLADLRGRIVILDFWTFCCINCLHVLDELRALEEKHRDTVVVIGVHSPKFVHEAEHRAVVDAVERYGVEHPVLDDPELATWKQYAVRAWPTLVVIDPEGYVVAQHAGEGHVHAIERLVGELEDEHAAKGTLRRGEGPYVPPEPEPTVLRFPGKALLLPSGNFLVSDTTRHQLVELAEDGESVVRRIGSGARGFADGSAGTAAFSEPQGLALLGDGSVAVADTVNHALRRLDLTTGEVSTLAGTGRQWWQGSPTSGPAREVDLSSPWDVAWWQGKVWIAMAGVHQLWAYDPEDGTVAVTAGTTNEGLVDGPGAEAWFAQPSGLAATPDRLWLADSETSALRWVEPDGSVHTAVGTGLFDFGHRDGAAGQALLQHPLGVTALPDGSVAVADTYNHALRRYDPATGEVTTLATDLREPSDAVLAGDDIVVVESARHRLTRLRLPEQAVQVPEVAHRTQREATEVAPGRLRLDVVFQAPAGQKLDTRYGPSTRLLVSATPPELLRSGEGAGTELSRALELDPSVPGGVLHVSAMAASCDDDPDNEYPACHVHQQDWGVPVRLTESGTDRLPLVLAGMDT
>CP026121.1|AXE87279.1|4376822_4377215_+|Cupin-domain-protein
MTKEPISLADALASFSEQWSPRVVTAVNDYDVRVAKVEGEHLWHAHDHTDEFFLVLDGELHLGLREPAGERTVVLPKGSVFTVPRGTEHKPYAPAPTAILMFEPTGTLTVGDRHDEVPDHVDATTGHALR
>CP026121.1|AXE87291.1|4391254_4393018_+|Aspartate--tRNA-ligase
MHRYRSHTCGELRSSDVGTDVRLSGWLHNRRDLGGILFIDLRDHYGITQLVARPGTPAYEALDKLSKESTVRVDGKVVSRGAENINPELPTGEVEVEVGEVELLGAAAPLPFTINTEDGVNEERRLEYRFLDLRRERMHRNIMLRTAVISAIRHKMTALGFNEMATPILSATSPEGARDFVVPSRLHPGKFYALPQAPQQFKQLLMISGFDRYFQIAPCFRDEDARADRSPGEFYQLDIEMSFVEQEDVFQPVEKLMTELFEEFGGGRHVTSPFPRIPFREAMLKYGSDKPDLRAQLELVDITDIFEGSEFKAFAGKHVRALPVPDVSGQPRKFFDQLGDYAVSQGAKGLAWVRVGEDGSLSGPIAKFLTEENVAELTKRLSLAPGHAVFFGAGEFDEVSKIMGAVRVEAAKRAGHFEEGVFRFCWIVDFPMYEKDEETGAIDFSHNPFSMPQGGLEALETQDPLDILGWQYDIVCNGVELSSGAIRNHEPEIMLKAFEIAGYDRDTVEEKFAGMLRAFRFGAPPHGGIAPGVDRIVMLLADEPNIRETIAFPLNGNAQDLMMGAPTELEEARLKELHLSVRKPQPK
>CP026121.1|AXE87292.1|4393107_4393407_+|Putative-tartrate-transporter
MSDAAISIPEAEQRAVGKFLRRMLPILVLMLLVNQMDRTNVGFVQDELRADVGVSATAYGLGAGLFCIGYALFEVPSNMWLERFGARIRLTRIMITWGA
>CP026121.1|AXE87293.1|4393797_4393929_-|hypothetical-protein
MKWLIVYIAITAQIHGIADSSPMRKDDSPPISSTRLGSQNVIA
>CP026121.1|AXE87294.1|4394292_4394706_-|hypothetical-protein
MVTSAHEGVHRIFQQRPEVLKPVFDVLGVALPEKATVDAITPDVTETRPLERRIDTLLRISTSDGDEFLLAVEAQERRDARSPGPRAVGPARPGEARHPRPRETRDRITSCTDLDTLTQWFDRSLTATTAEDLFVEE
>CP026121.1|AXE87295.1|4394809_4395175_-|hypothetical-protein
MALFGNAHTINPASAQQDYARLLGHGEQVHAAFLLIRDTILFTDRRLILIDKQGITGKKVEYHSVPYLSITHFAVETAGTFDLDAELKIWISGTPTPIEKTFTKGVDIYEVQAILTQFVAR
>CP026121.1|AXE87296.1|4395305_4396922_-|Methionine--tRNA-ligase
MAATGSEKQGAKAYYVSTPIYYVNDAPHLGHAYTTVAGDVLTRWHRQRGEKVWYLTGTDEHGQKIMRTAEANGVTPQAWADKLVTEAWKPLWEHLEIANDDFIRTTQKRHTDRVQEFVQDLYDKGEIYKGGYEGPYCVGCEEYKLPGELLDGEGDFAGQKLCPIHKKPVEILSEENYFFKLSEYGEKLLAHYEANPGFIQPESARNEVLNFVRQGLQDLSISRSTFDWGIPIPWDDKHVIYVWVDALLNYATAVGYNENQAKFEETFPADVHLVGKDILRFHAVIWPAMLMAQGLPLPGRIAANGWLMVGGEKMSKSNLTGIKPQDLTSHFGVDAYRWYFLRAIAFGQDGSFSWEDFSARYTSELANDYGNLASRVAAMVGKYFGGELPASTADGEAEQAIHDGLAKAVAEADRRIGDDLDFQGGILAVFDFVKQVNGYITEQEPWKVAKDTSDEGRARLATILYTAAESLRAVAVLLNPVMPETSQKLWDSLGAEASLGALADQKVQEAGTWGRLPAGTTVTKGAVLFPRLEEKPTA
>CP026121.1|AXE87297.1|4397011_4398655_-|von-Willebrand-factor-type-A-domain-protein
MEKPTGSGEPAAAEKPATAEKPAAAEKPATAEKPAAAEKPATAEKPAAAEKPAAAEKPAAAEDPAGTAEPTVVEPVTPTAEAEGAATDEKPVAEQPSADESDVVAEPVAEKAKADEPEIAEEPVADEPAVAEPAEAGRAAETHTIDEPGSSSEPETSAAQPEAALEGKAQPEPEAQPEAKAAAETDAPLETSNPAPKAEAEPTPAQPEPEQAPETEPQQEQTPEAEAEAAPTEEPKADTEPEAETDAEATRDAQATRDAEATTDAKATADAKATADPEPSATPEPAAADGAQPPQGPPAPDNESSTGGAGGNNKAEGEAEAEPQTPKPALTLAQLKTHAPTLATAYRAATTTLKTHNLTGTRAKVYLVLDRSASMRPYYKDGSAQALAEQTLALAAHLDPEATVPVVFFSTELDGTGEITLTDHENKIDDLHAGLGRMGRTSYHAAVEAVLAHHDKEATPGTPALVIFQTDGAPDAKTPATQALTNAAKTHPTVFFSFVAFGDPENKAFDYLRKLKTPNTSHFLAGETPRELTDKQLYDGVLANWRP
>CP026121.1|AXE87298.1|4399336_4401427_+|hypothetical-protein
MRKLLPLIGTPSGSHPGGRSALTCRFRCGDACFHEVPNTSSNEYVGDVIAGALSRRSMMRAAAVVTVAAAGAGAVGVAQAPQAGAVPTGVPADAAREAARGKAKGARGLRFAPVAPNTADAVTVPEGYRQNVVIRWGEPILRGAPAFDPERQSAKAQAGQFGYNCDFLALLPLPGERGRQLLVANHEYTDEILMFRGYDAANPTREQVEIAWAAHGLSAVVVEEDRRSGKLTAVPRHQLNRRVTATTEFRLTGPVAGSDLVKTSADPSGTKVLGTLNNCSGGVTPWGTTLHGEENFNQYFANSGRATDKRYGIGTGASERKWERFDKRFDVAQEPNEVHRFGYVVEFDPYDPASTPRKHTALGRFKHEAANIRMTADGRPVVYTGDDERFDYFYKFVSSKRMKRGTSRAVREHNLSLLDEGTLYVAKLTGDSPAIEIDGTGKLPSDGEFDGSGEWIPLATATADGAVSHVEGMSAEEVFVFTRLAGDKVGATKMDRPEDIEPNPVTGKVYVALTNNSNRGVGSNAKADEANPRNANKHGHVLELTERWNRPESTKFAWSLFLVAGDPDDPATYFAGFPKDGVSPISCPDNVAFDPYGNLWISTDGAQLGSHDGLFGVATRGERRGELKQFLTVPKGAETCGPIIQERRVLVAVQHPGEIDGASVEKPASTWPDGPGTYVRPAVVAVWRADGGDIGC
>CP026121.1|AXE87299.1|4401470_4402472_-|hypothetical-protein
MDTAAAEWTATADGPEHRPPGRRLGAWCAGLLLAGVSLIVGFRTAGSDGVTPVPQVLAFLPWLLAPTALALLLTLLSRWWLGTLWGVVVLGLLAWFIEPYGKTGDPAGRPVAELRVLTSNVEFGQGTGSLVAAVRREKPDFVFVQECEYTCDARLKADLSRDYPHRSAVEGGGSEGSVILSRHPLRPTEGVRATMGMPGAIADVDGHPVRLQLAHPMPPLPGQVDLWNRELDAVRDAAATDRGTPLVLAGDFNASQDHAAFRRILDTGLYDAARLDGADRTATWPAPTAPTFGTQIDHVLVSEEFAADRTRVLDLADTDHRAVVTDLTLHDGG
>CP026121.1|AXE87300.1|4402515_4403343_-|AB-hydrolase-superfamily-protein-YdjP
MAPFLAYEDKGPVSPRQPVVPLVPLVLVHGHPFDRTMWTPQLRTFSADRRVIAPDLRGYGASPATPAVTDFSGFARDIETLLDELEVESCVLAGLSMGGQIVMDCYRLFPERVRGLVLADTFPSAETPQGVRTRDAMADRLLAEGMRGYADEVLERMVAPYAPAEVKAHVHRMMTATSPEGAAAALRARARRPDYGALLTRVTVPALVVVGADDTFTPVSDARAMHAALPDAALHVIEGTAHMPNLERPAEFDRALADFLARVDERQPSPAPPRL

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Crispr_ID: CP026121_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026121_13

6533766-6533894

Orphan

Consensus_repeat	Method
CATCACGGAGCCGGGGATGGGGTACCGGTTCGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026121_13

>merge|CP026121|13|6533766-6533894|CRISPRCasFinder
CATCACGGAGCCGGGGATGGGGTACCGGTTCGAGAGGTGAGCTGCGCCGGCGGTTGGCGACCGGGGATCCGGGGGTTGGCCCCGGGGGGTGCGGCATCACGGAGCCGGGGATGGGGTACCGGTTCGAGA

>CP026121|13|10|6533766-6533894|CRISPRCasFinder
CATCACGGAGCCGGGGATGGGGTACCGGTTCGAGA	GGTGAGCTGCGCCGGCGGTTGGCGACCGGGGATCCGGGGGTTGGCCCCGGGGGGTGCGG
CATCACGGAGCCGGGGATGGGGTACCGGTTCGAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP026121.1\|AXE89189.1\|6534000_6534351_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239934
CP026121.1\|AXE89191.1\|6535151_6535829_-\|Trk-system-potassium-uptake-protein-TrkA	unknown	unknown	gnl\|CDD\|223643
CP026121.1\|AXE89195.1\|6538165_6538285_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE89182.1\|6526607_6527066_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378627
CP026121.1\|AXE89186.1\|6529258_6530434_+\|Alginate-lyase	unknown	unknown	gnl\|CDD\|377511
CP026121.1\|AXE89198.1\|6542547_6547971_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379021
CP026121.1\|AXE89185.1\|6528348_6529101_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378867
CP026121.1\|AXE89190.1\|6534354_6535083_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371490
CP026121.1\|AXE89180.1\|6525230_6525527_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379391
CP026121.1\|AXE89192.1\|6535828_6536500_-\|Trk-system-potassium-uptake-protein-TrkA	unknown	unknown	gnl\|CDD\|223643
CP026121.1\|AXE89187.1\|6530566_6533125_+\|Sensor-protein-KdpD	unknown	unknown	gnl\|CDD\|225115
CP026121.1\|AXE89193.1\|6536773_6537709_+\|putative-sugar-kinase-YdjH	unknown	unknown	gnl\|CDD\|238573
CP026121.1\|AXE89181.1\|6525540_6526539_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378945
CP026121.1\|AXE89197.1\|6540640_6541969_+\|putative-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|225174
CP026121.1\|AXE89183.1\|6527175_6527709_+\|Thioesterase-superfamily-protein	unknown	unknown	gnl\|CDD\|239524
CP026121.1\|AXE89196.1\|6538429_6540520_+\|Low-affinity-potassium-transport-system-protein-kup	unknown	unknown	gnl\|CDD\|223605
CP026121.1\|AXE89184.1\|6527777_6528347_+\|Deoxyuridine-5'-triphosphate-nucleotidohydrolase	unknown	unknown	gnl\|CDD\|234802
CP026121.1\|AXE89194.1\|6537686_6538145_-\|hypothetical-protein	unknown	unknown	unknown
CP026121.1\|AXE89179.1\|6523655_6524825_+\|Sensor-kinase-CusS	unknown	unknown	gnl\|CDD\|223715
CP026121.1\|AXE89178.1\|6522932_6523586_+\|Transcriptional-regulatory-protein-TcrA	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
CP026121.1\|AXE89189.1\|6534000_6534351_+\|hypothetical-protein	gnl\|CDD\|239934	cd04488, RecG_wedge_OBF, RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched chain substrates.	6.80131e-15
CP026121.1\|AXE89191.1\|6535151_6535829_-\|Trk-system-potassium-uptake-protein-TrkA	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	3.4169e-43
CP026121.1\|AXE89196.1\|6538429_6540520_+\|Low-affinity-potassium-transport-system-protein-kup	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.77194e-34
CP026121.1\|AXE89182.1\|6526607_6527066_-\|hypothetical-protein	gnl\|CDD\|378627	pfam11292, DUF3093, Protein of unknown function (DUF3093). This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.	1.01495e-51
CP026121.1\|AXE89186.1\|6529258_6530434_+\|Alginate-lyase	gnl\|CDD\|377511	pfam05426, Alginate_lyase, Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.	2.12801e-06
CP026121.1\|AXE89198.1\|6542547_6547971_-\|hypothetical-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	4.76444e-08
CP026121.1\|AXE89185.1\|6528348_6529101_+\|hypothetical-protein	gnl\|CDD\|378867	pfam12502, DUF3710, Protein of unknown function (DUF3710). This family of proteins is found in bacteria. Proteins in this family are typically between 237 and 284 amino acids in length. There are two conserved sequence motifs: DLG and DGPRW.	3.72295e-74
CP026121.1\|AXE89190.1\|6534354_6535083_+\|hypothetical-protein	gnl\|CDD\|371490	pfam11361, DUF3159, Protein of unknown function (DUF3159). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.	4.08577e-65
CP026121.1\|AXE89180.1\|6525230_6525527_+\|hypothetical-protein	gnl\|CDD\|379391	pfam13834, DUF4193, Domain of unknown function (DUF4193). This domain of unknown function contains four conserved cysteines and a conserved histidine, including a CXXXXH motif.	7.71124e-59
CP026121.1\|AXE89192.1\|6535828_6536500_-\|Trk-system-potassium-uptake-protein-TrkA	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.11716e-41
CP026121.1\|AXE89187.1\|6530566_6533125_+\|Sensor-protein-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
CP026121.1\|AXE89193.1\|6536773_6537709_+\|putative-sugar-kinase-YdjH	gnl\|CDD\|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	9.18394e-60
CP026121.1\|AXE89181.1\|6525540_6526539_+\|hypothetical-protein	gnl\|CDD\|378945	pfam12787, EcsC, EcsC protein family. Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.	0.00222484
CP026121.1\|AXE89197.1\|6540640_6541969_+\|putative-RNA-methyltransferase	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	7.28635e-93
CP026121.1\|AXE89183.1\|6527175_6527709_+\|Thioesterase-superfamily-protein	gnl\|CDD\|239524	cd03440, hot_dog, The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.	1.02411e-09
CP026121.1\|AXE89184.1\|6527777_6528347_+\|Deoxyuridine-5'-triphosphate-nucleotidohydrolase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	1.92937e-73
CP026121.1\|AXE89179.1\|6523655_6524825_+\|Sensor-kinase-CusS	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.85346e-49
CP026121.1\|AXE89178.1\|6522932_6523586_+\|Transcriptional-regulatory-protein-TcrA	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.68991e-71

>CP026121.1|AXE89187.1|6530566_6533125_+|Sensor-protein-KdpD
MGRGKLRIYLGAAPGVGKTYAMLSEAHRRVERGTDCVVAFVEHHGRPRTEVMLRGLEQVPRREIDHRGGTFTEMDLDAVLARRPQVALVDELAHTNVPGSRNAKRWQDVEELLAAGVDVISTVNIQHLESLGDIVESITGVRQQETVPDEVVRRADQIELVDMSPEALRRRMAHGNIYRPDKVDAALSNYFRPGNLTALRELALLWVADRVDAYLTRYRSDHRVSAIWGSRERIVVGLTGGPEGRTLIRRAARLAEKGAGGEVLAVYIARSDGLTSASPKELAMQRTLVEDLGGTFHHVVGDDIPAALLAFARGVNATQIVLGSSRRKTWQYVFGPGVGATVARESGPDLDVHIVTHGEVAKGRGLPVARGARLGRSRRVWGWIAGVAGPPALAALLSAVDLGLANDMLLFLALTVAAALLGGLLPALASAAVGSLLLNYFYTPPLHRWTIADPKNIVAIVIFVAVGAAVASVVDLAARRTHQAARLRAESEILSFLAGNVLRGETGLEELLERVRETFGMESAALLERAGDVEPWTCAGRVGQGRPVERPDQADVDVPVGDHMALALTGRVLPAEDRRVLAAFAAQAAVVLDRRRLREEADRARALAEGNRIRTALLAAVSHDLRTPLAGIKAAVSSLRSEDVEWSEEDRAELLEGIEEGADRLDHLVGNLLDMSRLQTGTVTPLIREIDLDEVAPMALGGVPEGNVVLDVPETLPMVDVDPGLLERAMANLVENAVKYSPPDASVLVAASALGDRVEVRVVDRGPGVPDEAKDRIFEPFQRHGDAPRGAGVGLGLAVARGFAEAMGGTLNAEDTPGGGLTMVLTLRAAGTRPEPRLPAEEPLAEPERQAS
>CP026121.1|AXE89186.1|6529258_6530434_+|Alginate-lyase
MRRTALLAASAALLAGVLARPADAAPSAPATFVHPGVTVSKSQLDFTRSQVNAGAQPWKGAFDRMTASKYADLSRTPRPRAVVECGSYSNPNHGCTDEREDAIAAYTHALAWYVTRDERHARKAIELMDAWSAVIRDHTNSNAPLQTGWAGSSWPRAAEIIKYTYTGTWANSGRFATMLRTVYLPEIINGSHSNGNWELSMMEAAVGISVFLEDKASYDKAMAKFRTRTAAYVYLESDGPLPKTVPGQHLDTRDKIVTYWQGQSTFVNGLSQETCRDFTHTGYGLSAISHVAETSRIQGQDLYGTDVGERLRHGLGLHAKYELGTAAPSWLCGGSLKLGLGPIPEVGHNALANRLGHAMTHTETLTTRGRPAGSNHLFVAWETLTHGDNPA
>CP026121.1|AXE89185.1|6528348_6529101_+|hypothetical-protein
MFGRRKKRDAAEDAAGEAEQVVDGVDSEAGDEGERLRLEPAPRPDGPWDSSEVRDPAEGRVDLGGLFVPGVDGMELRVEVAGDAIVAATVVLRDSAIQLQGFAAPKREGIWGEVREEIATGITQQGGIVDEVEGPLGWELRAQVPVQLPDGTGGFQVVRFVGVDGPRWFLRGVISGQGAVQPQAAGLLEQIFRDTVVVRGEGPMAPRDPIVLKLPNDAQMVPEGVQQEEGSRFAGGMGQLQRGPEITEVR
>CP026121.1|AXE89184.1|6527777_6528347_+|Deoxyuridine-5'-triphosphate-nucleotidohydrolase
MTPTSPASRQPVDVLIRRVDPDVPLPSYAHPGDAGADLRTTEACELAPGERAVLPTGVSVALPEGYAAFVHPRSGLAARCGVALVNAPGTVDAGYRGEIKVIVVNLDPRKAVRFERFDRIAQLVVQQVERVRFQEVAELPDSARAEGGFGSTGGHAVVDGTSGTSGQAAIGGRTGGNRYASVVSDREGQ
>CP026121.1|AXE89183.1|6527175_6527709_+|Thioesterase-superfamily-protein
MRHPDAPAPGELLGAHYGQCFGCGGDQPHGLHLEARAGEGVSLTAEFTVQPAHQGAPGLAHGGVLTSALDETLGSLNWLLRTIAVTGRLETDFVRPVPVGTTLHLEAEVTAVAGRKIYSTATGRVGGPDGPVAVRADALFVEVKVDHFVDHGRPEEIQAAMSDPDQVRRARAFEVNP
>CP026121.1|AXE89182.1|6526607_6527066_-|hypothetical-protein
MQLSAAPYEERLTAPRTWWLISFLVGVSMALVLLPFGTLPMLGGLAGGTAVAAVAASSYGSVRIRVVGDSLIAGEAKIPVAALGEAEVLDAEETRAWRTYKADPRAFMLLRAYIPTALRVEVTDPEDPTPYLYLSTREPERLAEALRAAKSA
>CP026121.1|AXE89181.1|6525540_6526539_+|hypothetical-protein
MTGSTPPWKRRFSKRKADEGPIDDGPQHGARDDGRGSTDTGAASLEPAADRGDLPASVDVPAPVARRRAGAIRERAREGARKGGERARAGLAYLADRIIDMAPRVPVRDLATLRGQFPGLGPEELADRLVAGAAKATATVGAGVGAAAMLPVPPAMPTELAAEVTGVAAIELKLIAELHEVYGVRPPGNLKQRSTAYLDSWSGERGIDATKPSTFSTALNSRMKRELRQRIMKRMLRNMPNLMPFLVGAAVGAAMNRSETRKLAARIREDLRKIQVPWEALESLPALERPADALEMGEITHDPLGHRADDKRDAEHDEKRDGAQDDKRDGGP
>CP026121.1|AXE89180.1|6525230_6525527_+|hypothetical-protein
MATDYDTPRKTDDDVDSDSLEELKARRNDKSASAVDVDEFEAAEGLELPGADLSNEELAVRVLPKQQDEFTCMSCFLVHHRSQLAREKNGQPICRDCD
>CP026121.1|AXE89179.1|6523655_6524825_+|Sensor-kinase-CusS
MPPFPWLRPTIRIRLTLLYGGMFLIAGILLLSIIYLLAAQALNVGSDLPFKIVEGKVTSDICNLPDQASPAEFNNAMNQCVNDQRQHALDNLLSRSLLALLGLAVIAFAFGYAMAGRVLSPLGRITRTARTVAGSDLSRRIELDGPDDELKELADTFDDMLERLQRAFTAQQRFVGNASHELRTPLAINRTLLEVHLSDPNAPVELQQLGKTLLATNERSEQLVEGLLLLARSDNQIVERGPVDLAEVASQAIDQVHGEAEAKGVRIRGEQKPAVVQGNGVLLERIALNLLQNAVRYNVPEDGWVEVTTDVQHGQAVLVVSNTGPVVPAYEIDNLFEPFRRLRTERTGSDKGVGLGLSIVRSVARAHGGHIYAQPREGGGLVMRVTLPI
>CP026121.1|AXE89178.1|6522932_6523586_+|Transcriptional-regulatory-protein-TcrA
MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDDVCRKIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTSVPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWDENTDPFTNVVRVTVMTLRRKLGEPPVIVTVPGSGYRI
>CP026121.1|AXE89189.1|6534000_6534351_+|hypothetical-protein
MLDRLSSSQEDLESEELREDSETTGCIRIGDCQDRQIVTVTGTLRTVTLRPRAGVPALEAELFDGSAALDVVWLGRRSIVGIEPGRKLIASGRVSMSRGRRVLFNPKYELRPLGRE
>CP026121.1|AXE89190.1|6534354_6535083_+|hypothetical-protein
MTSLDKPTEENSADDARAVTEAALFEAFGGVRGMVETVVPGLLFVTIYTINKDLHLSAIAALAVSLVLVVVRLVMRDTVKHAFSGVFGVAFGVVFAMMTGNAKDFYLPGMLYTLGLGLAYVITAMAGVPLIGLILGPVFKENLSWRTRNPGRKKAYTKASYAWGAILLAKCAILFPLYWWADTTQLGWVLVALKIPPFLLAVWLTWVFLAKAPAPIDVFAEMEAEEKAAEERERQAAARSAE
>CP026121.1|AXE89191.1|6535151_6535829_-|Trk-system-potassium-uptake-protein-TrkA
MRVAIAGAGAVGRSIAGELLENGHEVLLIDKAPTAISVERVPQAEWLLADACEITSLDEAALQRCNVVIAATGDDKVNLVVSLLAKTEYGVPRVVARVNNPKNEWLFNESWGVDVAVSTPRLMSALVEEAVSVGDLVRLLRFSHGDANLVELTLPEESALAGTRVGDVEWPEDTSLVTIIRGTRVLTPSREDSLEAGDELLFVAAQAREEQLEDLLSVRRDSAKS
>CP026121.1|AXE89192.1|6535828_6536500_-|Trk-system-potassium-uptake-protein-TrkA
MHIVIMGCGRVGSALAQNLEQQGHTVAVVDQDPTAFRRLGSSFGGRRVTGVGFDQDTLREAGIEEAGAFAAVSSGDNSNIIAARVAREMFGIENVAARIYDPRRAEVYQRLGIPTVATVRWTADQMLRRLLPSGAEPLWRDPTGGVQLAEVHASTAWVGHKISRIQEETGVRVAFLTRLGEAVLPTSQTVLQEGDLVHVMMRTDEVDTVEAAFAKGPEEEGGH
>CP026121.1|AXE89193.1|6536773_6537709_+|putative-sugar-kinase-YdjH
MRTDIDVLVLGGAGVDTIVHVPELPVPFADSHMIRPGIVTRAGQSGDFVALGTSALGLRTHHIDMLGDDPEGDLVRALHRDRGIALTAVPQPLGTKRAVNLVGPDGRRLSLYDATRSAETDRLPEATLRALAAVSRHAHVVITQPCAHALPILREAGVTISTDLHDWDGADPYHEPFAHQADLVFLSSTALADPERTMRRIAERGRARAVVATAGADGAYLLADGALTHVPAAEPPSPVVDSNGAGDAFAAAFLHAWLNGEPPHRCALHGAVAGAYACTVPSTRAESIGREELRAGVAELERVSVRSRPCG
>CP026121.1|AXE89194.1|6537686_6538145_-|hypothetical-protein
MNKHHRRFSSVLIATVAVAGLALTTACGGDDESTPAPKGETTTAASPEANEPEPQGRSERDDLVRFELEDRSQAGINNIWVVWTIKNNSSEKSTYSWDWEAVDAQGTRVANSSQLETDVQPGQTATGEFPTTLKTTEGIKLNITSFNRTAGF
>CP026121.1|AXE89195.1|6538165_6538285_-|hypothetical-protein
MHAPAELIGAAATLIVLGILTLASVRSIGRRKDVSPEAR
>CP026121.1|AXE89196.1|6538429_6540520_+|Low-affinity-potassium-transport-system-protein-kup
MGGPAIERLRSSVVSKLTDVPKRILIGRALRSDRLGETLLPKRIALPVFASDPLSSVAYAPGEVLLVLSIAGVTAYHFSPWIAVAVVVLMFTVVASYRQNVHAYPSGGGDYEVANTNLGPKAGLTVASALLVDYVLTVAVSISSGIENLGSAIPFVVEHKVLCAIGVIVLLTLMNLRGVKESGSLFAIPTYVFVAGVFTMIAWGAFRGLVLDDTMRAPTADYVIKPEHQGLAGFALVFLLLRAFSSGCAALTGVEAISNGVPAFRKPKSKNAATTLAMMGLLAVTMFCGIIALAAATDVRMAENPARDLFHNGVPLGADYVQNPVISQVAEAVFGKGSFLFIVLAAATALVLFLAANTAYNGFPLLGSILAQDRYLPRQLHTRGDRLAFSNGIVLLAGAAGLLVWIYGADSTRLIQLYIVGVFVSFTLSQTGMVRHWNRHLATEQDQAKRRRMIRSRAINAFGAFFTGLVLVVVLVTKFTHGAWVALLGMVIFYATMTAIRKHYDRVAEEIAAPEGPSDDSVRPSRVHSVVLISKIHRPTLRALAYAKLMRSDTLEAVSVNVDPAETKALREEWERRGIDVPLKVLDSPYREITRPIIEYVKSLRKESPRDAVSVIIPEYVVGHWYEHLLHNQSALRLKGRLLFTPGIMVTSVPYQLQSSEAAKRRARRQQEWNAPGSVRRGPAQERTRESSDPKS
>CP026121.1|AXE89197.1|6540640_6541969_+|putative-RNA-methyltransferase
MQAEPRKSLVGEEYEVEVGPVAHGGHCIARTSEGQVLFVRHALPGERVVARVTEGEEGARFLRADAVRVLDASKDRIDEPCPYAGPGRCGGCDWQHAKPGAQRRLKADVIAEQLQRLAGLTPEEAGWDGTVLPAEGDKVPAGQVPAWRTRVQYAVTADGRAGLRRHRSHEVEPIDHCMIAAEGVSELGIEKRDWTGMDSVEAIAATGSQDRQVILTPKPGARLPLVELDRPVSVLRVDERSGGVHRVHGRPFVRERADGRTHRVGGGGFWQVHPKAADTLVTAVMQGLLPRKGDMALDLYCGVGLFAGALADRVGDKGAVLGIESGKRAVEDARHNLADFDRVRIEQGKVESVLPRTGITEVDLIVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLGYFRDGGYRVRTLRAFDLFPMTHHVECVAILEPAAKGS
>CP026121.1|AXE89198.1|6542547_6547971_-|hypothetical-protein
MARNARAEQLREYGRSVLEGARSEQVLRMARQVNAASYTSAREYAGRSLFELLQNGYDAHPRDRRDGRVHVLLDEAEGDWGTLYVANGGTPFTWRNIERICELAQSSKEVGEGIGNKGVGFRSILLISDAPEIYSADPDSPIGPELDGYCFRFAQRADVEEFLAGEDNAHEVAAKYPPLQAPLPLDDVPATCRQFAAQGYVTVVRLPLLSEAARAEVRLRMRELAGAKVPVMLFLDRLVGLTLERRATGGEAGVPDDDHEAHERHELSRSEEPFAVARDGAGHEFPVSFATVRLGPSDTFLVARGTVEKERLNSTLAEAVGSGLLDDTWQEWKRSAVVEVALPLPATRRPRRGQIYTFLPMGEDQAAPFPGHVNAPFFTKFDRTGLPPDNPLNVLLLDAVAETCLAAAAQLRTVPDPAMRQLAVDLVSWENEKGSPGRLRAAALQVHGSELADVPLVPVLAADGAPPEACWAPPRDAVLWPDLNLTVLTAHRAHKAGIVVADPETGGDRLKRLATLCKALGCPWEPGPEILAEYVERIARGLPLPGPGESPEQWSALYEDLAALFADNGHVLHGRQLLLAEDCTRQHTNRPPGRTGTGTSTRARGKPGGQGARREAFFQPVHTETNQTEAPSVPAPLRKRLFYLHPGLVWKDRGEHTRGRGARAFLEEEGLVRPYDTKGLLDHVRQALGVSTDLRLRLQTLRFVFRLWQPRRSLGGMEISSLGLYVPSADGRLIKASDAVFGRGWGRASAGDDLAAVVAAGQDVSKSLKAIAGRLLAAPEEFAKRSETEEWRAFLLEAGVADGLVPVRSPDALGWVEQGQELSARRLVRMAKVSAEVQEQWEPYVHWPGVYYPRTPYRGTPAWRLPGQDVVGRLGQEARLAYARLVLHGLASWEDARFASVWTSAGSQSSPDRERVPTPLGAFVREQPWLPVRGRDRAVRFVRPADAWHCPPGLEEEPSYAPTVDHRLRHLLERGKAGDRLREMRLPTWDDPRDSARLVAALGRLAAEGALGAEDRPAAQRANERAWRHLVRRPRPELPKGASLLAESGDRLISVPLSALDGGESDDDGDARTVLCVSGERDSLTALLVREMARPLLILPGVAAEAAALLAARHPAGVRHTDDLKFTVTVDGAQVNAAAMGEPLVQQLPWITLAVGVLCDHLARGPRASEVELSELTSLIRGIRLHRYRSWDIELDGRPVTLPGRLGGVLPLPDPKHPLVLAPAGEPGWPETARLVVAVAELLGRREFGDRLRLAAHQLASRHADLLDPGHEDLADALEVTVRQVEETSRRIDGAIGAVLERCRPFLVHLLGTETANSLILPPPGDTREFQAHLEEYAAELPVPVSEFIARARAARGTDELRRDLGIGFAELNDTLRAMSPPLDPVSHAAEHEEALRTYLDLRKKDLVDRLRWAALEDFDARRPMPDWPSVRALDWITAPEAWEYTVDTADTGLLEAHVEEQLALRLSRPVPLPRSGERLPAPDQVRGANLRTITGLAAELAVLVRAAGHPLPAALTGGEPAEEVTARLEAAGALDFRPLSPADVVGWLAALGQWPDGMAVATDPERHGLSEADLERVRNAAEHERRERERKRRSISFCGRDFEVSSGDFTALTRELDRVLQSGSAPGITAAGPFRFTDPRPQTGRTQATGRTRGRRYGGGMDSGLTTAQREAIGYVGEWYAYQWLCGRYPDRMDETCWVSSNRRKAFPSPSGDDGLGFDFRVGSGSRPYLYEVKATAGEGGRFELGESEVRAARQHAGNDRWRLLVVTHALTPHKVAIQMLPNPYGKRGRGRYREEGGALRFSYLL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	35740-35759	0	1.0
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	36200-36219	0	1.0
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	36245-36264	0	1.0
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	36290-36309	0	1.0
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	36440-36459	0	1.0
CP026121_1	1.2\|35859\|18\|CP026121\|CRT	35859-35876	18	CP026121.1	35742-35759	0	1.0
CP026121_1	1.2\|35859\|18\|CP026121\|CRT	35859-35876	18	CP026121.1	36158-36175	0	1.0
CP026121_1	1.2\|35859\|18\|CP026121\|CRT	35859-35876	18	CP026121.1	36202-36219	0	1.0
CP026121_1	1.2\|35859\|18\|CP026121\|CRT	35859-35876	18	CP026121.1	36247-36264	0	1.0
CP026121_1	1.2\|35859\|18\|CP026121\|CRT	35859-35876	18	CP026121.1	36292-36309	0	1.0
CP026121_1	1.2\|35859\|18\|CP026121\|CRT	35859-35876	18	CP026121.1	36442-36459	0	1.0
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	35740-35759	0	1.0
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	36200-36219	0	1.0
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	36245-36264	0	1.0
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	36290-36309	0	1.0
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	36440-36459	0	1.0
CP026121_11	11.1\|5683033\|55\|CP026121\|PILER-CR	5683033-5683087	55	CP026121.1	5683435-5683489	0	1.0
CP026121_11	11.2\|5683111\|37\|CP026121\|PILER-CR	5683111-5683147	37	CP026121.1	5683513-5683549	0	1.0
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	35695-35714	2	0.9
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	35755-35774	2	0.9
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	35770-35789	2	0.9
CP026121_1	1.1\|35815\|20\|CP026121\|CRT	35815-35834	20	CP026121.1	6065657-6065676	2	0.9
CP026121_1	1.3\|35901\|21\|CP026121\|CRT	35901-35921	21	CP026121.1	3150956-3150976	2	0.905
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	35695-35714	2	0.9
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	35755-35774	2	0.9
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	35770-35789	2	0.9
CP026121_1	1.4\|35946\|20\|CP026121\|CRT	35946-35965	20	CP026121.1	6065657-6065676	2	0.9

1. spacer 1.1|35815|20|CP026121|CRT matches to position: 35740-35759, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

2. spacer 1.1|35815|20|CP026121|CRT matches to position: 36200-36219, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

3. spacer 1.1|35815|20|CP026121|CRT matches to position: 36245-36264, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

4. spacer 1.1|35815|20|CP026121|CRT matches to position: 36290-36309, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

5. spacer 1.1|35815|20|CP026121|CRT matches to position: 36440-36459, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

6. spacer 1.2|35859|18|CP026121|CRT matches to position: 35742-35759, mismatch: 0, identity: 1.0

cgcggcacggcggtgggc	CRISPR spacer
cgcggcacggcggtgggc	Protospacer
******************

7. spacer 1.2|35859|18|CP026121|CRT matches to position: 36158-36175, mismatch: 0, identity: 1.0

cgcggcacggcggtgggc	CRISPR spacer
cgcggcacggcggtgggc	Protospacer
******************

8. spacer 1.2|35859|18|CP026121|CRT matches to position: 36202-36219, mismatch: 0, identity: 1.0

cgcggcacggcggtgggc	CRISPR spacer
cgcggcacggcggtgggc	Protospacer
******************

9. spacer 1.2|35859|18|CP026121|CRT matches to position: 36247-36264, mismatch: 0, identity: 1.0

cgcggcacggcggtgggc	CRISPR spacer
cgcggcacggcggtgggc	Protospacer
******************

10. spacer 1.2|35859|18|CP026121|CRT matches to position: 36292-36309, mismatch: 0, identity: 1.0

cgcggcacggcggtgggc	CRISPR spacer
cgcggcacggcggtgggc	Protospacer
******************

11. spacer 1.2|35859|18|CP026121|CRT matches to position: 36442-36459, mismatch: 0, identity: 1.0

cgcggcacggcggtgggc	CRISPR spacer
cgcggcacggcggtgggc	Protospacer
******************

12. spacer 1.4|35946|20|CP026121|CRT matches to position: 35740-35759, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

13. spacer 1.4|35946|20|CP026121|CRT matches to position: 36200-36219, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

14. spacer 1.4|35946|20|CP026121|CRT matches to position: 36245-36264, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

15. spacer 1.4|35946|20|CP026121|CRT matches to position: 36290-36309, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

16. spacer 1.4|35946|20|CP026121|CRT matches to position: 36440-36459, mismatch: 0, identity: 1.0

tgcgcggcacggcggtgggc	CRISPR spacer
tgcgcggcacggcggtgggc	Protospacer
********************

17. spacer 11.1|5683033|55|CP026121|PILER-CR matches to position: 5683435-5683489, mismatch: 0, identity: 1.0

gcttggcctccgctccctcggccgcgtcgacggcggcctcggcggtggctgcggt	CRISPR spacer
gcttggcctccgctccctcggccgcgtcgacggcggcctcggcggtggctgcggt	Protospacer
*******************************************************

18. spacer 11.2|5683111|37|CP026121|PILER-CR matches to position: 5683513-5683549, mismatch: 0, identity: 1.0

tctccgtggcttcggaggcctcggccgctgcggcggc	CRISPR spacer
tctccgtggcttcggaggcctcggccgctgcggcggc	Protospacer
*************************************

19. spacer 1.1|35815|20|CP026121|CRT matches to position: 35695-35714, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggcgcggcggtgggc	Protospacer
** *****.***********

20. spacer 1.1|35815|20|CP026121|CRT matches to position: 35755-35774, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggcgcggcggtgggc	Protospacer
** *****.***********

21. spacer 1.1|35815|20|CP026121|CRT matches to position: 35770-35789, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggcgcggcggtgggc	Protospacer
** *****.***********

22. spacer 1.1|35815|20|CP026121|CRT matches to position: 6065657-6065676, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggctcggcggtgggc	Protospacer
** ***** ***********

23. spacer 1.3|35901|21|CP026121|CRT matches to position: 3150956-3150976, mismatch: 2, identity: 0.905

cgcgcggcacaagctggcccg	CRISPR spacer
cgcccggcacaagatggcccg	Protospacer
*** ********* *******

24. spacer 1.4|35946|20|CP026121|CRT matches to position: 35695-35714, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggcgcggcggtgggc	Protospacer
** *****.***********

25. spacer 1.4|35946|20|CP026121|CRT matches to position: 35755-35774, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggcgcggcggtgggc	Protospacer
** *****.***********

26. spacer 1.4|35946|20|CP026121|CRT matches to position: 35770-35789, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggcgcggcggtgggc	Protospacer
** *****.***********

27. spacer 1.4|35946|20|CP026121|CRT matches to position: 6065657-6065676, mismatch: 2, identity: 0.9

tgcgcggcacggcggtgggc	CRISPR spacer
tgggcggctcggcggtgggc	Protospacer
** ***** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026121_14	14.1\|8448280\|25\|CP026121\|CRISPRCasFinder	8448280-8448304	25	NZ_CP049041	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_4, complete sequence	21080-21104	3	0.88
CP026121_14	14.1\|8448280\|25\|CP026121\|CRISPRCasFinder	8448280-8448304	25	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	224762-224786	4	0.84
CP026121_14	14.1\|8448280\|25\|CP026121\|CRISPRCasFinder	8448280-8448304	25	MN855976	Siphoviridae sp. isolate 68, complete genome	10053-10077	6	0.76
CP026121_4	4.2\|1157515\|32\|CP026121\|CRISPRCasFinder	1157515-1157546	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144537-144568	8	0.75
CP026121_4	4.2\|1157515\|32\|CP026121\|CRISPRCasFinder	1157515-1157546	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156004-156035	8	0.75
CP026121_5	5.2\|2063720\|32\|CP026121\|PILER-CR	2063720-2063751	32	MT773557	Myoviridae sp. isolate BML_S_1 genomic sequence	22876-22907	9	0.719

1. spacer 14.1|8448280|25|CP026121|CRISPRCasFinder matches to NZ_CP049041 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_4, complete sequence) position: , mismatch: 3, identity: 0.88

ttccggccaggcggacttggcggca	CRISPR spacer
atcctgacaggcggacttggcggca	Protospacer
 *** * ******************

2. spacer 14.1|8448280|25|CP026121|CRISPRCasFinder matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

ttccggccaggcggacttggcggca	CRISPR spacer
ctccggcgaggaggacttggcggcg	Protospacer
.****** *** ************.

3. spacer 14.1|8448280|25|CP026121|CRISPRCasFinder matches to MN855976 (Siphoviridae sp. isolate 68, complete genome) position: , mismatch: 6, identity: 0.76

ttccggccaggcggacttggcggca	CRISPR spacer
cgaatgccaggcggacttggcggcc	Protospacer
.    *******************

4. spacer 4.2|1157515|32|CP026121|CRISPRCasFinder matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 8, identity: 0.75

---gaatccgtatcagcagccgggataccagcaga	CRISPR spacer
cctggat---tatcagcagcctgcataccagcacg	Protospacer
   *.**   *********** * ********* .

5. spacer 4.2|1157515|32|CP026121|CRISPRCasFinder matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

---gaatccgtatcagcagccgggataccagcaga	CRISPR spacer
cctggat---tatcagcagcctgcataccagcacg	Protospacer
   *.**   *********** * ********* .

6. spacer 5.2|2063720|32|CP026121|PILER-CR matches to MT773557 (Myoviridae sp. isolate BML_S_1 genomic sequence) position: , mismatch: 9, identity: 0.719

accccaagcaccaaccacaggccacgaccgcc	CRISPR spacer
aacccaagcaccaacctctggccactcattct	Protospacer
* ************** * ******   . *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026121

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection