CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030279	Propionibacterium freudenreichii strain CB129slpB chromosome, complete genome	1 crisprs	csa3,cas3,WYL,DinG,DEDDh	0	4	0	0

Cas Category Instructions

Results visualization

1. CP030279

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CRISPR-Cas detection and classification

Crispr_ID: CP030279_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030279_2

2465096-2465207

Orphan

Consensus_repeat	Method
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030279_2

>merge|CP030279|2|2465096-2465207|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCACCTGGCCAGAAACCTCTACCCCGAGCCCCTTGAGTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

>CP030279|2|2|2465096-2465207|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CTGGCCAGAAACCTCTACCCCGAGCCCCTTGA
GTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030279.1\|AWY96658.1\|2471178_2471925_+\|Transcriptional-regulator,-Sir2-family	unknown	unknown	gnl\|CDD\|234777
CP030279.1\|AWY96652.1\|2460214_2461303_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
CP030279.1\|AWY96662.1\|2474891_2475611_-\|OmpR-family-two-component-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP030279.1\|AWY96657.1\|2469268_2470978_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|224235
CP030279.1\|AWY96659.1\|2472092_2472590_-\|putative-thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
CP030279.1\|AWY96650.1\|2458623_2459343_-\|Glycerophosphoryl-diester-phosphodiesterase-family-protein	unknown	unknown	gnl\|CDD\|176506
CP030279.1\|AWY96651.1\|2459339_2460023_-\|Oxidoreductase,-short-chain-dehydrogenase/reductase-family-protein	unknown	unknown	gnl\|CDD\|181298
CP030279.1\|AWY96645.1\|2452135_2453014_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|224059
CP030279.1\|AWY96644.1\|2451172_2451859_+\|Response-regulator-receiver-domain-protein	unknown	unknown	gnl\|CDD\|225107
CP030279.1\|AWY96649.1\|2457706_2458525_+\|Shikimate-5-dehydrogenase-aroE	unknown	unknown	gnl\|CDD\|234703
CP030279.1\|AWY96647.1\|2455623_2456466_-\|2,5-diketo-D-gluconic-acid-reductase-A	unknown	unknown	gnl\|CDD\|381297
CP030279.1\|AWY96648.1\|2456570_2457620_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|225333
CP030279.1\|AWY96660.1\|2472896_2473544_+\|periplasmic-or-exported-protein	unknown	unknown	unknown
CP030279.1\|AWY96646.1\|2453013_2455470_+\|ABC-transporter-associated-permease	unknown	unknown	gnl\|CDD\|226957
CP030279.1\|AWY96661.1\|2473605_2474601_-\|Two-component-system,-sensory-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP030279.1\|AWY96653.1\|2463382_2464909_+\|Cell-envelope-related-transcriptional-attenuator	unknown	unknown	gnl\|CDD\|224235
CP030279.1\|AWY96654.1\|2465357_2465795_-\|Membrane-protein-without-function	unknown	unknown	unknown
CP030279.1\|AWY96663.1\|2475607_2477002_-\|exonuclease-of-the-beta-lactamase-fold-involved-in-RNA-processing	unknown	unknown	gnl\|CDD\|224157
CP030279.1\|AWY96655.1\|2466008_2467016_+\|NAD(P)H-quinone-oxidoreductase,-PIG3-family	unknown	unknown	gnl\|CDD\|176180
CP030279.1\|AWY96656.1\|2467177_2468614_+\|Argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434

Protein	Function_ID	Function_description	E-value
CP030279.1\|AWY96658.1\|2471178_2471925_+\|Transcriptional-regulator,-Sir2-family	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.06066e-122
CP030279.1\|AWY96652.1\|2460214_2461303_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.13032e-20
CP030279.1\|AWY96662.1\|2474891_2475611_-\|OmpR-family-two-component-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.83675e-82
CP030279.1\|AWY96657.1\|2469268_2470978_-\|Hypothetical-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.9145e-39
CP030279.1\|AWY96659.1\|2472092_2472590_-\|putative-thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	4.97723e-95
CP030279.1\|AWY96650.1\|2458623_2459343_-\|Glycerophosphoryl-diester-phosphodiesterase-family-protein	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	2.44995e-102
CP030279.1\|AWY96651.1\|2459339_2460023_-\|Oxidoreductase,-short-chain-dehydrogenase/reductase-family-protein	gnl\|CDD\|181298	PRK08219, PRK08219, SDR family oxidoreductase.	1.09359e-113
CP030279.1\|AWY96645.1\|2452135_2453014_+\|ABC-transporter	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	8.56637e-108
CP030279.1\|AWY96644.1\|2451172_2451859_+\|Response-regulator-receiver-domain-protein	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.34929e-66
CP030279.1\|AWY96649.1\|2457706_2458525_+\|Shikimate-5-dehydrogenase-aroE	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	9.31165e-61
CP030279.1\|AWY96647.1\|2455623_2456466_-\|2,5-diketo-D-gluconic-acid-reductase-A	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	2.72191e-116
CP030279.1\|AWY96648.1\|2456570_2457620_-\|Hypothetical-protein	gnl\|CDD\|225333	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism].	8.63447e-34
CP030279.1\|AWY96646.1\|2453013_2455470_+\|ABC-transporter-associated-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	7.57226e-18
CP030279.1\|AWY96661.1\|2473605_2474601_-\|Two-component-system,-sensory-transduction-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.789e-50
CP030279.1\|AWY96653.1\|2463382_2464909_+\|Cell-envelope-related-transcriptional-attenuator	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	8.48722e-28
CP030279.1\|AWY96663.1\|2475607_2477002_-\|exonuclease-of-the-beta-lactamase-fold-involved-in-RNA-processing	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	9.67091e-94
CP030279.1\|AWY96655.1\|2466008_2467016_+\|NAD(P)H-quinone-oxidoreductase,-PIG3-family	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.75585e-157
CP030279.1\|AWY96656.1\|2467177_2468614_+\|Argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0

>CP030279.1|AWY96653.1|2463382_2464909_+|Cell-envelope-related-transcriptional-attenuator
MLRTTLGSLIPGAGLIGTRLTMIGTLLFMMTVVFGSGVILAAVVHPPALMATVMNSVGLTAIGIMLVAVTIIWMAIVAGTYLVTRPRRMKRWQRIAGAIVVFLMAALVGSVSSVGAAYAFESAIVVSDVFGNSKTRSQTRPLGDWANKDRVNILLLGGDSGADRDEDLGLRTDTVMLASINTHTGNTVFIQLPRNLENVPFPAGSDLAKVYPNGRVWDRSSGTEDNYMLNAVWNEVPLEHPELFRNTDQPGADATKLAVSGITGLTVDYYAMINIDGIQALVDAMGGVVVNINFPIAKGGHVDGYGDEECGVDGNLSVGPDQKLDGADAMWYARSRCNDPDYDYGRMRRQSCLVNAIIRQANPQTMLTRYEAIAAAGKNMMSTDIPESLLDDATNLALQVKDAQVSRVVFSQAIGTAPQVGDINPGNPDYNAIRNRISGAITASDNGTTPSAPASASSSPMATGSAGSASSVASAAGSGSTSASAAGAAATPSGTAENMSGACDYHPN
>CP030279.1|AWY96652.1|2460214_2461303_+|VanZ-family-protein
MLFLPYVVWSFHRFGQLSFRRIIGWAAVCVYFTGLAVYTLVPFPEDPQAFCASTHVGYNLHPLEFITDIRTQTAGMGLRSALTSAVVLQVVFNVVLFVPLGVLLHRYFRRGAITSTLIGLIMSVCIETTQYTGFFGLLPCAYRVADVDDVITNTAGTLIGALIAPLLLFWMPASRTLTSTRLVARPVTSMRRWVGMVVDGFLFYLIAASSSIAVLVAGRLLSWWPVEAEPEWISPAGDVVALLMVFVIPSLTGRGGSLGQRVVWLTPRWPAAAGSGDGSGGAVGADSSGGTVGGDWPDGAAPDGGQMGGGTYRGGSLDSGSLGSGLPSSGLSDGRTLANGPLAFAGGRGPAGGHAGAPAVHR
>CP030279.1|AWY96651.1|2459339_2460023_-|Oxidoreductase,-short-chain-dehydrogenase/reductase-family-protein
MAERRAVLITGATRGIGRAIADELADDWHVLVGGRHPDQVRKVVQALPSAEPFIADLTDAGAMQAAVEQIGHLDAVVHSAGAVVMGPVSELSRQDWRDLYEINVVAVADLTAELLPKLREAHGQVVTINSGSGFHTGPGQTCYAATKHALVAFTDGLREEERGVVRVTSVHPGRVDTDMQVDIQRQLGAQYQPERYLQPADVARAVELALTMRPGANVDTVSVRPAL
>CP030279.1|AWY96650.1|2458623_2459343_-|Glycerophosphoryl-diester-phosphodiesterase-family-protein
MTAVWAHRGASAAAPENTLPAFQAAATLGADGVELDVQRTRDGQLVVCHDETIDRTSNGVGNLADYTLSQLKEFDFSAGHPEFTNVAIPTLAEVFDVLGPTGLMINIELKNSVVPYEGMEAQVLALVHAAGWDDKVFYSSFNHRSMRRLAERDYPVGLLYDSVLWRAAKYAAELGASALHPSGRAVRVNPGVVRAAHKRGLSVNVWTIDKPAQIQALLDLEVDAIITNVPDVALGVRDA
>CP030279.1|AWY96649.1|2457706_2458525_+|Shikimate-5-dehydrogenase-aroE
MTHHAAVIGSPIAHSLSPVLHRAAYQQLGLHDWEYDAIEVTPDTLGEFIASRDNSWAGLSVTAPLKEALIEFGRPDQQSSELQSANTLIFGHPNRLFNTDVTGLRDAMASYDVIMPGTAVIMGAGATARSAISTLVRLGCRVIRVVARDAGRAHASLDRVAALYGTDLQIVDWSGFDALGADSADVLISTAPVQYTPEEAAQLAAVSQVVFDIVYQNYPTNLSRAAIKAGRVSVDGVDLLVHQAIDQVRLMTGEEPLAEPLIEVCRAELAKR
>CP030279.1|AWY96648.1|2456570_2457620_-|Hypothetical-protein
MSTQLCYVSGRRDGLITTVRFDDKAETAEVVSRLNLGPKPMPLELNRERRLLRVATGADPLRVSTLKLLPDGSCQVLSEVNCPLSATYLSFTPDDRMAFVVSYHASRLAWAPVWDNHLIDDSAWHVEQVGEQPHCVEPSPDGRHVYVVELGANRVQGFRVSDGELVADEQIGVQFEHGTGPRHLVFDASGEHGYLIEELGGHIVHLTRDPDSGRLTVAERVPYSDRADDLRPGVHVPSGSTPSLDDQTLRHWGAELALDPQRHWIVASERRASTLNLQALNDDGSFGARLDHVPTEKQPRGMGLIGDHHVIAGAELGDTATIYRVDDQLEPVAEVEGLGGPVWFASIGS
>CP030279.1|AWY96647.1|2455623_2456466_-|2,5-diketo-D-gluconic-acid-reductase-A
MIIPTTPTPTVELSGGTRMPMLGMGTWPLKGEECRAAVASAIEQGYRLVDTAEAYGNEEAVGKAVREAGPDRAEIFVTTKFSKQWHSRKGVHEALEHSLERLGLDYVDLFLMHWPMPGEGSYVDAYRGMVELKEQGLAKAIGVSNFKVHHLDDLITEGMTPEVNQIQLDPSRPRLEVRDFLDNHDIVTEAWSPLGRGADGVLNAPAVLDAAKKHGITPAAAVLAWELNQGIVTIPKSANPEHQRTNLEAIGVELSAQEMKAIDALADPNAKIDDSDKTGN
>CP030279.1|AWY96646.1|2453013_2455470_+|ABC-transporter-associated-permease
MLRQPRQLISAGIAILLGVAFVAATFVFSASLNAGMTKLVAGMVGDAKVVVSPSENTYTPVTQQLTDTVSKVPGITHSKKIVQGSATLRLDGQDNHALISSQPDLSSQTTLFEGTLAKGDGQVTISKTAADAYRLKVGDKVTLANYDDRAFDETVVGIVNAGNDAVAQPLASWVFAPTEQAMTLASTSGYNMVFLYGNGDAGALRDAVQAAAGVSDAQLTVRTGQDEVQAAMKQMTGSTNSIQYVLLGFAAIALFVGIIVIANTFSILVAQRVRQLALLRCVGATRNQVFGMVFGEAAVLGLVGSAAGILAGFGLAAALIPLASKGAQIPLEFAISPAAVIVPLVVGVLITLAASISPARKATRVAPLAAMRPELAVSKAKRLGVVRAIIGIVLVVGGAAMLALGIVRAKPDTGVGGLAIAIAGGLLSFIGVLLVGRGLIPALARLIGAPLAKSSVSGDLAVGNTRRNPGRAAATANALLVGVTLITLLTVGASTSQASLDRYLSATYPQDAVVSAAKGIDEQALTRIKATDGVQDAALVPSTTTEVSSRDHAAQQRPVMGVDNTAAHLTHFPQRYENLDDNTVRTSDTSVHNGETVTIKGASGTTVQLTAKVSNDYSPSLVVSTTVLSKLDPGAAETAWVQYKSGVNVNTVTTDLGKAVGGLGQVSIDSGAQMRAQFGQMIDIVLAVAVGLLAVAVAIAVIGVANTLGLSVLERTQEIGLLRALGMTRRQVRSMISWEAVMIAVVAAALGLALGVAYGLIGAKVMLGSITSTPFVAGLPWVRLAAIGVIAVAAGWLASLIPASRANRISPSAALATE
>CP030279.1|AWY96645.1|2452135_2453014_+|ABC-transporter
MTTMTQPTTAAVRTVHLTKIYGQGDTQVTALNDVSVEFIRGQFTAIMGPSGSGKSTLMHCAAGLDTPTSGQVFIGQVDATSLSDTNLTLLRRERVGFVFQAFNLLPTMTAEQNILLPLKLAHSKPDRQWLDTIVKVLGLQDRLSHRPAELSGGQQQRVAVARALITRPEVIFADEPTGALDSAASNELLDFLSRSVHELGQTIVMVTHDAHAAGFSDRVLRLADGRIVSDEPVNHPIAGQTPVPTTGFTSGAVAGTPNFAPAPGSAPQMGAANPQRPDDAPDAGLKRQAGDN
>CP030279.1|AWY96644.1|2451172_2451859_+|Response-regulator-receiver-domain-protein
MADEPIRLLLADDQEMVRVGFRMVLDSQPDMAVVAEAPNGRDAVDAVLHAAPGQAPDVALMDIRMPVLDGVAATQKIVADSDTRVLILTTFDLDEYVYSALQAGASGFLLKDAGPTELLAAIRAVASGDSVVAPSATRRLLERFVPTLPIAQSGGDTKKRLEALTDREREVLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLRDRVHMVVFAYDAGLVHPRG
>CP030279.1|AWY96654.1|2465357_2465795_-|Membrane-protein-without-function
MSSYILRPRIPRRAFVLGSAATVVGLVLVVIGLVQNWAILAIIVLAALLAVGLLTLLMVAYSMVNHRIHIDLDAKGYRVHGPGMDRRGTWAKVTRVAVTPDGSRLMIASGPVKRTYISCPKGGDDPAMQALIKEISAHLPEHSRR
>CP030279.1|AWY96655.1|2466008_2467016_+|NAD(P)H-quinone-oxidoreductase,-PIG3-family
MVADARVWQSGDMHAITMDEPGGVDVMSWAEVPIPDPGPGEVLVRTQAAGVNRGDVLQRQGHYPPPAGITDIMGMEALGVIEKLGDGVEGHQVGEQVLALVSGGAYAEFFVVPAGQLLKLPAGIDPLAAAGLVEVAATVVSNFDRVHLSAGETVLIHGGAGGIGTLAIQYAKALGAHVIVTAGSAKKLAYCRKLGADEGFDYHDDWEPQVMMATQDRGVDVILDIVGAKYLEANVRCLADDGRLVIIGMQKGTKGTLNIAVLLNKRGTVTATSLRFRSLASKAAICRRVEEAIWPLLSSGAIKPGNQTQVPMAHASKAHELLESGDNTGKIILVV
>CP030279.1|AWY96656.1|2467177_2468614_+|Argininosuccinate-synthase
MLDVVSKVLTSLPVGQRVGIAFSGGLDTSCAVAWMREKGAIPCTYTADIGQYDEPDIASVPGRAGQYGAELSRLVDCRESLVEEGLSALACGAFHVQSAGRAYFNTTPIGRAVTGTLLVRAMNDDNVSIWGDGSTYKGNDIERFYRYGLMANPSLRIYKPWLDEDFVSELGGRDEMSVWLQKRNLPYRDSKEKAYSTDANIWGATHEAKTLEHLDVSLETVEPIMGVKFWDPSVTIDTEDVTIGFEQGRPVTINGKKFDSAVDLVLEANKVGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLFIAYERLVNAIHNEDTIINYRNEGMRLGRLLYEGRWLDPQSLMIRESIQRWVASVVTGEVTLRLRRGEDYTIVNTDGPAFSYHPERLSMERVQDAAFGPLDRIGQLTMRNLDISDSRSRLEQYASQGQLTGGEAAKLVGALEPGKASEIADHPEHAGTSHATPLDNAAMETGAD
>CP030279.1|AWY96657.1|2469268_2470978_-|Hypothetical-protein
MSEEPQGGHVDDPSSASRARRAARAADDPGDGANTPRYADSAAKRRRGRLRPRWGRIAALAMALVLFVVVAAAGIYIWRANAGIKRSGAIADKTSQSSDLDLLVMGLDSRVDVNGNALPSDIYDALHSGDASDGGLNSNVLMYVHVPADGSQASVFAIPRDDYVDFPGCPDGVCKGKIKEAYGYAADAKTQELDKQGKTGQDAYQQARDAGRAAEVRTVEQFLGVEIDHFIEVTMVAFFQIAQVVQPITVCVNEKTVDTYSGADFKAGEQDINAEQAMAFVRQRRDTDNPDLAFTDLDRSRRQQAFIASLLVKLKKTNLLTNPGQLDKLVQVAQQNTVLDKNLKISQLTSLATSLEGSKLNFYTLPVESFGTADDGAAINVVDKAKIQGIVRSILHPGQSASPSASASASGSASYSPTYGMGATVSVMNESGVTGAAASLVGQLTGFGFTAGQATNGADILQESSVSYGSAVAGQAKQLAQQLGGLSANADSTLGANAVVVHMGTGFTGWPSASPSAASSAASTGGSSVSPSASSTAIPSAVDANSGGQSGPEPSQLTQISGGGIPCVK
>CP030279.1|AWY96658.1|2471178_2471925_+|Transcriptional-regulator,-Sir2-family
MSADQLSRILAPADHVVFFGGAGVSTESGIPDFRSATGLYKTQSGGEFPPEYMLSHSCWADHPEDFYAFYRKNMLHPEAKPNAAHYALARLEKAGRLTAVVTQNIDGLHQMAGSQKVFELHGSVLRNHCVDCHRSYPVEAIEQSTGIPRCTVCNGIIKPDVVLYEEGLDPDVMDGATRAIMAADVLIVGGTSLNVYPAAGLLEYYRGDKLVLINKSATPADNRAQLVIHDSIGKVLGQAVDEVLGDKA
>CP030279.1|AWY96659.1|2472092_2472590_-|putative-thiol-peroxidase
MSTTAFQGTPVHTVGELPAVGSQAPAFELVGKDLSTITLKSLRGRRVVLNIFPSLDTGVCATSVRTFNKLAAGLDNTTVLAVSKDLPFAAERFCVAEGIENVVPASAFRKHSFSNYGVLMTDGPLAGLLARSVVVIDENGTVVYNQLVPEIGNEPDYDDAVAALK
>CP030279.1|AWY96660.1|2472896_2473544_+|periplasmic-or-exported-protein
MSRRFATTLAASALSLVVLAGCSTATAGPSSGTPSGTVTAGAASNTSSTAANGSVDVAKAGVEELKGADARTLVDKLEATPLSQRRTDLRASVRADELQLSDTSGNKASVKMPADQFYLSFAPYVNKTHDCTYHSLTTCKAELGNKQMHVTITDAAGATVIDQDLTAADNGFIGVWLPRNITGTLTVSYDGKSASQQISTAKADDPTCLTTLHLA
>CP030279.1|AWY96661.1|2473605_2474601_-|Two-component-system,-sensory-transduction-histidine-kinase
MQADLSNPETVLRHVEEGMRSSNMIALAVAILIAVLAALLVSLYLATRVSASLAPLAAAARQVAAGDYTARVDAGPLGAEFDELTEAVNAMSQRLASVEQSRTRLFSDLAHEMRTPIAVVQAQLEGIEDGVVGVEDSIPVLRAQAERLTRLSSDIGLLSQAQEHALRYEFAPGEVASVMRGCVDDMALRYREAGVQLTLDVATHARAQLDTARFAQVITNLLANALNATVSAGRGRTGDRGGHVHVGVRRHGNEVAVQVRDDGVGISPEELPHVFDRFARVGPARDRSSGGFGIGLTVARAIMSAHHGRISADSPGPGRGATFTVTVPVLH
>CP030279.1|AWY96662.1|2474891_2475611_-|OmpR-family-two-component-response-regulator
MSAVQDAPGDAPCILIVEDEHSLATVMAGYFTRNGYRAEVVGDGLGAVAAARRLDPSVVILDLGLPSLDGVEVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRSAITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEAVWGVGWSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRMGQGR
>CP030279.1|AWY96663.1|2475607_2477002_-|exonuclease-of-the-beta-lactamase-fold-involved-in-RNA-processing
MSKPVATLTFLGAARTVTGSKFLLDLNERRLMVDAGMFQGAREWRRRNWDDFPVDPATITDLLITHAHMDHSGYIPALVKHGFHGRIHCTPQTRELTAIVLRDSANLQVNEARDAARGGYSKHNPPLPLYDEADVERSLPLFHDVAFDRDLDLGGGVHARFTRAGHILGSASIRVWLADDPQISVLFSGDLGRDQHPVLRRREEPEGATSVLIESTYGNREHPTGDEEDHEALAGLIRRTIARGGSVLIPAFAVDRTEILIKVLGEMQHAGRIPPVPIFINSPMGSAALDVYQGTGAHAELRADIDISALLNLPTLRDVRTKEESVALNRPAQPCIIISASGMATGGRVVHHLRHMLPDPRNAVVFTGYQALGTRGRSLVEGAKQIKMYGRYVPVKAEVLLDTAFSVHADAPELLEWLAALSPAPQVVYCVHGEPKSAEHLADTISEELGLMAVVPRYGEVVRL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030279_1	1.1\|390781\|21\|CP030279\|CRISPRCasFinder	390781-390801	21	NZ_CP035418	Leisingera sp. NJS204 plasmid unnamed1, complete sequence	24862-24882	1	0.952
CP030279_1	1.1\|390781\|21\|CP030279\|CRISPRCasFinder	390781-390801	21	NZ_CP041156	Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence	73773-73793	1	0.952
CP030279_1	1.1\|390781\|21\|CP030279\|CRISPRCasFinder	390781-390801	21	NZ_CP038237	Leisingera sp. NJS201 plasmid unnamed3, complete sequence	106383-106403	1	0.952
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	47914-47937	2	0.917
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	121074-121097	2	0.917
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP018821	Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence	296836-296859	2	0.917
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	MH444512	Bifidobacterium phage Willi, complete genome	3528-3551	2	0.917
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	MK932884	Bifidobacterium phage PMBT6, complete genome	3528-3551	2	0.917
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	499907-499930	3	0.875
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_AP014707	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence	49875-49898	3	0.875
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	32428-32451	3	0.875
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	71885-71908	3	0.875
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	KC170282	Uncultured bacterium plasmid pMBUI6, complete sequence	3102-3125	3	0.875
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	GQ919031	Streptomyces phage ZL12, complete genome	49155-49178	3	0.875
CP030279_1	1.3\|390874\|24\|CP030279\|CRISPRCasFinder	390874-390897	24	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1387809-1387832	3	0.875
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP054842	Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence	106401-106424	4	0.833
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	415999-416022	4	0.833
CP030279_1	1.2\|390826\|24\|CP030279\|CRISPRCasFinder	390826-390849	24	MT939492	Xanthomonas phage Xoo-sp14, complete genome	230325-230348	4	0.833
CP030279_2	2.1\|2465136\|32\|CP030279\|CRISPRCasFinder	2465136-2465167	32	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	93743-93774	8	0.75
CP030279_2	2.1\|2465136\|32\|CP030279\|CRISPRCasFinder	2465136-2465167	32	CP031732	Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence	144379-144410	8	0.75
CP030279_2	2.1\|2465136\|32\|CP030279\|CRISPRCasFinder	2465136-2465167	32	NZ_AP015031	Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence	216038-216069	8	0.75

1. spacer 1.1|390781|21|CP030279|CRISPRCasFinder matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

2. spacer 1.1|390781|21|CP030279|CRISPRCasFinder matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

3. spacer 1.1|390781|21|CP030279|CRISPRCasFinder matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

4. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aaaccggcggccaagaagcctgca	Protospacer
**.***************** ***

5. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

6. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

7. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to MH444512 (Bifidobacterium phage Willi, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

8. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to MK932884 (Bifidobacterium phage PMBT6, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

9. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggcaaataagccggcg	Protospacer
*********** ** ********.

10. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_AP014707 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcgaccgagaagccggcg	Protospacer
*********.**.**********.

11. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aaggcggcgaccaagaagccggcc	Protospacer
*** *****.*************

12. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccagcggtcaagaagccggcg	Protospacer
*****.****.************.

13. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagcccgcagccaagaagccggct	Protospacer
***** **.**************

14. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagaccgcggccaagaagccggcc	Protospacer
*** * *****************

15. spacer 1.3|390874|24|CP030279|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 3, identity: 0.875

acggcgtccacggccaagccggca	CRISPR spacer
tcggcgtcgacggcgaagccggca	Protospacer
 ******* ***** *********

16. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gattcggcggccaagaagccggcc	Protospacer
.* .*******************

17. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gagccgccggccaagaagccggtt	Protospacer
.***** ***************.

18. spacer 1.2|390826|24|CP030279|CRISPRCasFinder matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
aagccggctgccaagaagccgctg	Protospacer
******** ************ ..

19. spacer 2.1|2465136|32|CP030279|CRISPRCasFinder matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

20. spacer 2.1|2465136|32|CP030279|CRISPRCasFinder matches to CP031732 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

21. spacer 2.1|2465136|32|CP030279|CRISPRCasFinder matches to NZ_AP015031 (Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage