CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031105	Escherichia coli strain AMSCJX02 chromosome, complete genome	4 crisprs	c2c9_V-U4,DinG,DEDDh,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	8	11
CP031111	Escherichia coli strain AMSCJX02 plasmid pAMSC6, complete sequence	0 crisprs	WYL,RT	0	0
CP031110	Escherichia coli strain AMSCJX02 plasmid pAMSC5, complete sequence	0 crisprs	NA	0	1
CP031106	Escherichia coli strain AMSCJX02 plasmid pAMSC1, complete sequence	0 crisprs	DEDDh	0	0
CP031107	Escherichia coli strain AMSCJX02 plasmid pAMSC2, complete sequence	0 crisprs	NA	0	2
CP031108	Escherichia coli strain AMSCJX02 plasmid pAMSC3, complete sequence	0 crisprs	NA	0	2
CP031109	Escherichia coli strain AMSCJX02 plasmid pAMSC4, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031105_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031105_1

1275312-1276194

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

14 spacers

cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP031105_1

>merge|CP031105|1|1275312-1276194|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACAAAACCAAACTTCTCCATAAATTCCATAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGCGTACCGGATCGCGGACAACAAATTGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGAAACCAGTTGGCTCGTTGTTCTTCTTTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTTTTGTCGCATCCAGCCGTATTTTTTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCAGTGGTGAGGCCGGGAAGCGCGGTTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACTGATCAGCGAGGACACCGGCGGCGATTTTCGTCGGTTTATCCCCGCTGGCGCGGGGAACACGGCAAAAAGGCGGCGCGTTTAAAAGAGGCATACGGTTTATCCCCGCTGGCGCGGGGAACACTCGCCCATGTAACAGAAACGGGGATTTTAATTCGGTTTATCCCCGCTGGCGCGGGGAACACTGCTGGATGAGTTTATCGAACACAGAGCGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTGCTACCCGCTCAAAACCGCCGATTCGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACTCGGCCAGCGTCCAGGCTGGCACCCGATATTCCGGTTTATCCCCGCTGGCGCGGGGAACACAGTATTAACTGCGGTGGCAGTGAGGCCAATAGCGGTTTATCCCCGCTGGCGCGGGGAACACATACCGCAGCAAATTACGGTTCCAGAAACGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTTCACGCCAACGCAGAGGCGGGCCGCGTTAATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP031105|1|1|1275312-1276194|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGCGTACCGGATCGCGGACAACAAATTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTTTGTCGCATCCAGCCGTATTTTTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAGTGGTGAGGCCGGGAAGCGCGGTTGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATCAGCGAGGACACCGGCGGCGATTTTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAAAAAGGCGGCGCGTTTAAAAGAGGCATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCCCATGTAACAGAAACGGGGATTTTAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTGGATGAGTTTATCGAACACAGAGCGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCTACCCGCTCAAAACCGCCGATTCGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGGCCAGCGTCCAGGCTGGCACCCGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTATTAACTGCGGTGGCAGTGAGGCCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATACCGCAGCAAATTACGGTTCCAGAAACGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCACGCCAACGCAGAGGCGGGCCGCGTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP031105|1|1|1275312-1276194|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGCGTACCGGATCGCGGACAACAAATTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTTTGTCGCATCCAGCCGTATTTTTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAGTGGTGAGGCCGGGAAGCGCGGTTGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATCAGCGAGGACACCGGCGGCGATTTTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAAAAAGGCGGCGCGTTTAAAAGAGGCATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCCCATGTAACAGAAACGGGGATTTTAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTGGATGAGTTTATCGAACACAGAGCGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCTACCCGCTCAAAACCGCCGATTCGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGGCCAGCGTCCAGGCTGGCACCCGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTATTAACTGCGGTGGCAGTGAGGCCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATACCGCAGCAAATTACGGTTCCAGAAACGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCACGCCAACGCAGAGGCGGGCCGCGTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP031105|1|1|1275312-1276194|CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGCGTACCGGATCGCGGACAACAAATTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTTTGTCGCATCCAGCCGTATTTTTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAGTGGTGAGGCCGGGAAGCGCGGTTGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATCAGCGAGGACACCGGCGGCGATTTTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAAAAAGGCGGCGCGTTTAAAAGAGGCATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCCCATGTAACAGAAACGGGGATTTTAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTGGATGAGTTTATCGAACACAGAGCGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCTACCCGCTCAAAACCGCCGATTCGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGGCCAGCGTCCAGGCTGGCACCCGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTATTAACTGCGGTGGCAGTGAGGCCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATACCGCAGCAAATTACGGTTCCAGAAACGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCACGCCAACGCAGAGGCGGGCCGCGTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031105.1\|AXF69223.1\|1269391_1270102_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP031105.1\|AXF69239.1\|1286285_1287998_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP031105.1\|AXF69232.1\|1278132_1278879_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP031105.1\|AXF69234.1\|1279977_1280511_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP031105.1\|AXF69220.1\|1267124_1267886_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP031105.1\|AXF69228.1\|1273032_1273941_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP031105.1\|AXF69226.1\|1270998_1271604_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP031105.1\|AXF69231.1\|1277500_1278151_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP031105.1\|AXF69236.1\|1282167_1284867_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP031105.1\|AXF69233.1\|1278889_1279963_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP031105.1\|AXF69237.1\|1285060_1285213_-\|type-I-toxin-antitoxin-system-hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
CP031105.1\|AXF69222.1\|1268912_1269392_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP031105.1\|AXF69230.1\|1276583_1277504_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP031105.1\|AXF69224.1\|1270120_1270432_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP031105.1\|AXF69225.1\|1270625_1270949_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP031105.1\|AXF69238.1\|1285477_1286212_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP031105.1\|AXF69235.1\|1280507_1282070_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP031105.1\|AXF69229.1\|1274192_1275230_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP031105.1\|AXF69227.1\|1271603_1273031_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP031105.1\|AXF69221.1\|1267866_1268916_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
CP031105.1\|AXF69223.1\|1269391_1270102_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP031105.1\|AXF69239.1\|1286285_1287998_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP031105.1\|AXF69232.1\|1278132_1278879_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.95914e-49
CP031105.1\|AXF69234.1\|1279977_1280511_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.05058e-29
CP031105.1\|AXF69220.1\|1267124_1267886_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP031105.1\|AXF69228.1\|1273032_1273941_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP031105.1\|AXF69226.1\|1270998_1271604_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP031105.1\|AXF69231.1\|1277500_1278151_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.04911e-92
CP031105.1\|AXF69236.1\|1282167_1284867_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.96222e-176
CP031105.1\|AXF69233.1\|1278889_1279963_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.07534e-147
CP031105.1\|AXF69237.1\|1285060_1285213_-\|type-I-toxin-antitoxin-system-hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP031105.1\|AXF69222.1\|1268912_1269392_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
CP031105.1\|AXF69230.1\|1276583_1277504_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.23259e-157
CP031105.1\|AXF69224.1\|1270120_1270432_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP031105.1\|AXF69225.1\|1270625_1270949_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP031105.1\|AXF69238.1\|1285477_1286212_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
CP031105.1\|AXF69235.1\|1280507_1282070_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	4.91562e-166
CP031105.1\|AXF69229.1\|1274192_1275230_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP031105.1\|AXF69227.1\|1271603_1273031_-\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP031105.1\|AXF69221.1\|1267866_1268916_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>CP031105.1|AXF69229.1|1274192_1275230_+|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP031105.1|AXF69228.1|1273032_1273941_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP031105.1|AXF69227.1|1271603_1273031_-|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIRKDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP031105.1|AXF69226.1|1270998_1271604_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP031105.1|AXF69225.1|1270625_1270949_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP031105.1|AXF69224.1|1270120_1270432_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP031105.1|AXF69223.1|1269391_1270102_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP031105.1|AXF69222.1|1268912_1269392_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP031105.1|AXF69221.1|1267866_1268916_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP031105.1|AXF69220.1|1267124_1267886_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>CP031105.1|AXF69230.1|1276583_1277504_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPQPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>CP031105.1|AXF69231.1|1277500_1278151_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFVQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP031105.1|AXF69232.1|1278132_1278879_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>CP031105.1|AXF69233.1|1278889_1279963_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDSGSPKTVILGGATRLRVSSQSLKRAWRTSELFEQALAGHIGVRSGRIAREAATILIEKGIEDKKAIEWAVEIADYLGKAKKDKKQKNDKKPKDPLTSAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEKDLALLRKDRMAVDIAMFGRMLAKKPGFNVEAACQVAHAFGVSETIVENDFFTAVDDLRQASEDAGAGHVDETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP031105.1|AXF69234.1|1279977_1280511_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDEHKVALRKWHEELQDKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMKKGRFTRLLAVKTPDDLLRQLRRAVKLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP031105.1|AXF69235.1|1280507_1282070_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDQRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFDELKVKATSIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNAPIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQAASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIEEGQDPYELLSKWQKEMWLFARQDFDDRVFTNPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE
>CP031105.1|AXF69236.1|1282167_1284867_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQESARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKALFPRIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAQAMDIKHYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLSFYSPESRPSLVLAHSARTLMDRFNESLWSGDLIGSEEPDEQAFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVS
>CP031105.1|AXF69237.1|1285060_1285213_-|type-I-toxin-antitoxin-system-hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP031105.1|AXF69238.1|1285477_1286212_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>CP031105.1|AXF69239.1|1286285_1287998_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD

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Crispr_ID: CP031105_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031105_2

1301912-1302184

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

4 spacers

The CRISPR arrays of CP031105_2

>merge|CP031105|2|1301912-1302184|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCAACATCGGAAACGGCTTCGCGGCGGCGGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAAAGTCGGATAAGATTAACTCCGTTAGATCGGTTTATCCCCGCTGGCGCGGGGAACACGAAACGCCGGTTGAACGTCGTGCAAAAATCATCGGTTTATCCCCGCTGGCGCGGGGAACACGACTGGTACGGCCCGTGGGAGCGTGTGATCGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP031105|2|2|1301912-1302184|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	AACATCGGAAACGGCTTCGCGGCGGCGGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAGTCGGATAAGATTAACTCCGTTAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGCCGGTTGAACGTCGTGCAAAAATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACTGGTACGGCCCGTGGGAGCGTGTGATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP031105|2|2|1301912-1302184|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	AACATCGGAAACGGCTTCGCGGCGGCGGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAGTCGGATAAGATTAACTCCGTTAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGCCGGTTGAACGTCGTGCAAAAATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACTGGTACGGCCCGTGGGAGCGTGTGATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP031105|2|2|1301973-1302184|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAGTCGGATAAGATTAACTCCGTTAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGCCGGTTGAACGTCGTGCAAAAATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACTGGTACGGCCCGTGGGAGCGTGTGATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031105.1\|AXF69255.1\|1304405_1305734_-\|IS4-like-element-IS4-family-transposase	unknown	unknown	gnl\|CDD\|379017
CP031105.1\|AXF69242.1\|1290555_1291827_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP031105.1\|AXF69257.1\|1307244_1308882_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP031105.1\|AXF69244.1\|1292094_1292670_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP031105.1\|AXF69248.1\|1295862_1297317_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP031105.1\|AXF69252.1\|1302523_1303195_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP031105.1\|AXF69259.1\|1309971_1310307_-\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP031105.1\|AXF69247.1\|1294431_1295769_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP031105.1\|AXF69256.1\|1305858_1307157_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP031105.1\|AXF69261.1\|1310632_1312867_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP031105.1\|AXF69260.1\|1310306_1310555_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182082
CP031105.1\|AXF69253.1\|1303333_1303474_+\|hypothetical-protein	unknown	unknown	unknown
CP031105.1\|AXF69251.1\|1299794_1301273_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP031105.1\|AXF69243.1\|1291817_1292078_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP031105.1\|AXF69246.1\|1293674_1294454_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP031105.1\|AXF69250.1\|1298490_1299768_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP031105.1\|AXF69254.1\|1303487_1304360_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
CP031105.1\|AXF69258.1\|1309109_1309901_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP031105.1\|AXF69249.1\|1297386_1298172_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP031105.1\|AXF69245.1\|1292817_1293678_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936

Protein	Function_ID	Function_description	E-value
CP031105.1\|AXF69255.1\|1304405_1305734_-\|IS4-like-element-IS4-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	8.73403e-38
CP031105.1\|AXF69242.1\|1290555_1291827_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.18278e-125
CP031105.1\|AXF69257.1\|1307244_1308882_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP031105.1\|AXF69244.1\|1292094_1292670_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP031105.1\|AXF69248.1\|1295862_1297317_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
CP031105.1\|AXF69252.1\|1302523_1303195_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.73859e-155
CP031105.1\|AXF69259.1\|1309971_1310307_-\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP031105.1\|AXF69247.1\|1294431_1295769_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
CP031105.1\|AXF69256.1\|1305858_1307157_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP031105.1\|AXF69261.1\|1310632_1312867_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP031105.1\|AXF69260.1\|1310306_1310555_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP031105.1\|AXF69251.1\|1299794_1301273_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	5.32002e-110
CP031105.1\|AXF69243.1\|1291817_1292078_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
CP031105.1\|AXF69246.1\|1293674_1294454_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62
CP031105.1\|AXF69250.1\|1298490_1299768_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	4.09704e-29
CP031105.1\|AXF69254.1\|1303487_1304360_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	7.22483e-100
CP031105.1\|AXF69258.1\|1309109_1309901_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
CP031105.1\|AXF69249.1\|1297386_1298172_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.28606e-139
CP031105.1\|AXF69245.1\|1292817_1293678_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90

>CP031105.1|AXF69251.1|1299794_1301273_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPYADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSRAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>CP031105.1|AXF69250.1|1298490_1299768_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIAINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>CP031105.1|AXF69249.1|1297386_1298172_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLEHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP031105.1|AXF69248.1|1295862_1297317_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP031105.1|AXF69247.1|1294431_1295769_-|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP031105.1|AXF69246.1|1293674_1294454_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>CP031105.1|AXF69245.1|1292817_1293678_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>CP031105.1|AXF69244.1|1292094_1292670_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP031105.1|AXF69243.1|1291817_1292078_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP031105.1|AXF69242.1|1290555_1291827_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRVWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>CP031105.1|AXF69252.1|1302523_1303195_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP031105.1|AXF69253.1|1303333_1303474_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>CP031105.1|AXF69254.1|1303487_1304360_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLDSIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKFAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVYISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGKSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>CP031105.1|AXF69255.1|1304405_1305734_-|IS4-like-element-IS4-family-transposase
MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPQWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMHDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA
>CP031105.1|AXF69256.1|1305858_1307157_-|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP031105.1|AXF69257.1|1307244_1308882_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP031105.1|AXF69258.1|1309109_1309901_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP031105.1|AXF69259.1|1309971_1310307_-|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP031105.1|AXF69260.1|1310306_1310555_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP031105.1|AXF69261.1|1310632_1312867_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS

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Crispr_ID: CP031105_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031105_3

3137576-3137691

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031105_3

>merge|CP031105|3|3137576-3137691|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>CP031105|3|3|3137576-3137691|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP031105.1\|AXF70945.1\|3148496_3149675_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129977
CP031105.1\|AXF70931.1\|3127106_3129461_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP031105.1\|AXF70934.1\|3131318_3134225_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP031105.1\|AXF70937.1\|3137710_3139213_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP031105.1\|AXF70935.1\|3134389_3136741_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP031105.1\|AXF72561.1\|3141262_3142141_+\|arabinose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|236717
CP031105.1\|AXF70928.1\|3123960_3124782_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
CP031105.1\|AXF70936.1\|3136815_3137511_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP031105.1\|AXF70939.1\|3142226_3142991_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
CP031105.1\|AXF70943.1\|3146519_3148175_-\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
CP031105.1\|AXF70938.1\|3139223_3140924_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP031105.1\|AXF70932.1\|3129715_3130531_+\|molecular-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP031105.1\|AXF70940.1\|3143104_3143803_-\|thiamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182716
CP031105.1\|AXF70927.1\|3123580_3123958_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP031105.1\|AXF70944.1\|3148263_3148395_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
CP031105.1\|AXF70942.1\|3145372_3146356_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
CP031105.1\|AXF70929.1\|3124778_3125768_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP031105.1\|AXF70930.1\|3125767_3127054_-\|chaperone-SurA	unknown	unknown	gnl\|CDD\|236758
CP031105.1\|AXF70941.1\|3143786_3145397_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
CP031105.1\|AXF70933.1\|3130647_3131307_-\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	unknown	unknown	gnl\|CDD\|236659

Protein	Function_ID	Function_description	E-value
CP031105.1\|AXF70945.1\|3148496_3149675_+\|MFS-transporter	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP031105.1\|AXF70931.1\|3127106_3129461_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP031105.1\|AXF70934.1\|3131318_3134225_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP031105.1\|AXF70937.1\|3137710_3139213_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP031105.1\|AXF70935.1\|3134389_3136741_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP031105.1\|AXF72561.1\|3141262_3142141_+\|arabinose-operon-regulatory-protein	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP031105.1\|AXF70928.1\|3123960_3124782_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.97214e-148
CP031105.1\|AXF70936.1\|3136815_3137511_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
CP031105.1\|AXF70939.1\|3142226_3142991_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.3759e-49
CP031105.1\|AXF70943.1\|3146519_3148175_-\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
CP031105.1\|AXF70938.1\|3139223_3140924_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP031105.1\|AXF70932.1\|3129715_3130531_+\|molecular-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
CP031105.1\|AXF70940.1\|3143104_3143803_-\|thiamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.55198e-163
CP031105.1\|AXF70927.1\|3123580_3123958_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
CP031105.1\|AXF70944.1\|3148263_3148395_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
CP031105.1\|AXF70942.1\|3145372_3146356_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
CP031105.1\|AXF70929.1\|3124778_3125768_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP031105.1\|AXF70930.1\|3125767_3127054_-\|chaperone-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP031105.1\|AXF70941.1\|3143786_3145397_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
CP031105.1\|AXF70933.1\|3130647_3131307_-\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159

>CP031105.1|AXF70936.1|3136815_3137511_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>CP031105.1|AXF70935.1|3134389_3136741_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIETQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>CP031105.1|AXF70934.1|3131318_3134225_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>CP031105.1|AXF70933.1|3130647_3131307_-|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>CP031105.1|AXF70932.1|3129715_3130531_+|molecular-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>CP031105.1|AXF70931.1|3127106_3129461_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNSL
>CP031105.1|AXF70930.1|3125767_3127054_-|chaperone-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>CP031105.1|AXF70929.1|3124778_3125768_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPLLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>CP031105.1|AXF70928.1|3123960_3124782_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVFTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>CP031105.1|AXF70927.1|3123580_3123958_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>CP031105.1|AXF70937.1|3137710_3139213_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>CP031105.1|AXF70938.1|3139223_3140924_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDTTGSTPAPIDANGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVATL
>CP031105.1|AXF72561.1|3141262_3142141_+|arabinose-operon-regulatory-protein
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>CP031105.1|AXF70939.1|3142226_3142991_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGG
>CP031105.1|AXF70940.1|3143104_3143803_-|thiamine-ABC-transporter-ATP-binding-protein
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDSVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTNELLSGKASASALLGITG
>CP031105.1|AXF70941.1|3143786_3145397_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGHQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALLQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>CP031105.1|AXF70942.1|3145372_3146356_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDTPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>CP031105.1|AXF70943.1|3146519_3148175_-|HTH-type-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPTGLESLTLTFYQDHSEHRVIAGIMQQILASQQVTLEIKEIDYDQWHTGEIESDIWLNSANFTLPLDFSVFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>CP031105.1|AXF70944.1|3148263_3148395_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>CP031105.1|AXF70945.1|3148496_3149675_+|MFS-transporter
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV

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Crispr_ID: CP031105_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031105_4

3649172-3649268

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031105_4

>merge|CP031105|4|3649172-3649268|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>CP031105|4|4|3649172-3649268|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
CP031105.1\|AXF71402.1\|3654680_3655547_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
CP031105.1\|AXF71385.1\|3637051_3638413_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
CP031105.1\|AXF71400.1\|3653837_3654359_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
CP031105.1\|AXF71388.1\|3641066_3641852_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
CP031105.1\|AXF71404.1\|3656789_3657482_+\|molecular-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
CP031105.1\|AXF71399.1\|3652416_3653802_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP031105.1\|AXF71396.1\|3650396_3650906_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
CP031105.1\|AXF71387.1\|3639792_3640938_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
CP031105.1\|AXF71386.1\|3638469_3639771_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
CP031105.1\|AXF71391.1\|3644485_3646153_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
CP031105.1\|AXF71389.1\|3641862_3643098_-\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|274471
CP031105.1\|AXF71393.1\|3647432_3648248_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
CP031105.1\|AXF71401.1\|3654466_3654679_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
CP031105.1\|AXF71392.1\|3646162_3647422_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
CP031105.1\|AXF71398.1\|3651748_3652243_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
CP031105.1\|AXF71394.1\|3648244_3649138_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
CP031105.1\|AXF71403.1\|3656027_3656570_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
CP031105.1\|AXF71397.1\|3651023_3651746_-\|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl\|CDD\|235420
CP031105.1\|AXF71390.1\|3643119_3644169_-\|ureidoglycolate-dehydrogenase-(NAD(+))	unknown	unknown	gnl\|CDD\|184985
CP031105.1\|AXF71395.1\|3649332_3650400_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674

Protein	Function_ID	Function_description	E-value
CP031105.1\|AXF71402.1\|3654680_3655547_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
CP031105.1\|AXF71385.1\|3637051_3638413_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
CP031105.1\|AXF71400.1\|3653837_3654359_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.06651e-30
CP031105.1\|AXF71388.1\|3641066_3641852_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	4.3298e-152
CP031105.1\|AXF71404.1\|3656789_3657482_+\|molecular-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	1.85595e-148
CP031105.1\|AXF71399.1\|3652416_3653802_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP031105.1\|AXF71396.1\|3650396_3650906_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
CP031105.1\|AXF71387.1\|3639792_3640938_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
CP031105.1\|AXF71386.1\|3638469_3639771_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
CP031105.1\|AXF71391.1\|3644485_3646153_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
CP031105.1\|AXF71389.1\|3641862_3643098_-\|allantoate-amidohydrolase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
CP031105.1\|AXF71393.1\|3647432_3648248_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	4.08791e-37
CP031105.1\|AXF71401.1\|3654466_3654679_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
CP031105.1\|AXF71392.1\|3646162_3647422_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	7.64498e-130
CP031105.1\|AXF71398.1\|3651748_3652243_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.40187e-121
CP031105.1\|AXF71394.1\|3648244_3649138_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
CP031105.1\|AXF71403.1\|3656027_3656570_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
CP031105.1\|AXF71397.1\|3651023_3651746_-\|UDP-2,3-diacylglucosamine-hydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
CP031105.1\|AXF71390.1\|3643119_3644169_-\|ureidoglycolate-dehydrogenase-(NAD(+))	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
CP031105.1\|AXF71395.1\|3649332_3650400_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.21739e-179

>CP031105.1|AXF71394.1|3648244_3649138_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>CP031105.1|AXF71393.1|3647432_3648248_+|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLTAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>CP031105.1|AXF71392.1|3646162_3647422_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFRIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>CP031105.1|AXF71391.1|3644485_3646153_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANLALISVAGEYAAELTNQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDSQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSSATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>CP031105.1|AXF71390.1|3643119_3644169_-|ureidoglycolate-dehydrogenase-(NAD(+))
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGLIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>CP031105.1|AXF71389.1|3641862_3643098_-|allantoate-amidohydrolase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPHPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>CP031105.1|AXF71388.1|3641066_3641852_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>CP031105.1|AXF71387.1|3639792_3640938_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGETVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLRAVNLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>CP031105.1|AXF71386.1|3638469_3639771_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>CP031105.1|AXF71385.1|3637051_3638413_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCKNALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>CP031105.1|AXF71395.1|3649332_3650400_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>CP031105.1|AXF71396.1|3650396_3650906_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>CP031105.1|AXF71397.1|3651023_3651746_-|UDP-2,3-diacylglucosamine-hydrolase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>CP031105.1|AXF71398.1|3651748_3652243_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>CP031105.1|AXF71399.1|3652416_3653802_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>CP031105.1|AXF71400.1|3653837_3654359_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>CP031105.1|AXF71401.1|3654466_3654679_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>CP031105.1|AXF71402.1|3654680_3655547_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPLLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>CP031105.1|AXF71403.1|3656027_3656570_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>CP031105.1|AXF71404.1|3656789_3657482_+|molecular-chaperone-FimC
MMTKIKLLMLIIFYLIISASSHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031105_1	1.1\|1275341\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275341-1275372	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
CP031105_1	1.2\|1275402\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275402-1275433	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	649166-649197	6	0.812
CP031105_1	1.5\|1275585\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275585-1275616	32	NZ_CP015609	Bacillus safensis strain U14-5 plasmid unnamed2, complete sequence	10946-10977	6	0.812
CP031105_1	1.5\|1275585\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275585-1275616	32	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	305380-305411	6	0.812
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_AP014659	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence	89317-89348	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_AP014659	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence	149653-149684	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_AP014686	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence	101093-101124	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_AP014686	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence	141992-142023	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	99321-99352	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	142212-142243	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	161765-161796	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	175817-175848	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	140186-140217	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	188728-188759	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	267789-267820	7	0.781
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP049702	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence	70012-70043	7	0.781
CP031105_2	2.1\|1301941\|32\|CP031105\|CRISPRCasFinder,CRT	1301941-1301972	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
CP031105_1	1.2\|1275402\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275402-1275433	32	MT889371	Microbacterium phage DelaGarza, complete genome	35549-35580	8	0.75
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	KT221034	Streptomyces phage SF3, complete genome	42881-42912	8	0.75
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NC_008270	Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence	149701-149732	8	0.75
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	797644-797675	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1077804-1077835	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1081182-1081213	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1264658-1264689	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1083481-1083512	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1080184-1080215	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	909207-909238	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1059848-1059879	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
CP031105_2	2.1\|1301941\|32\|CP031105\|CRISPRCasFinder,CRT	1301941-1301972	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_KY433363	Proteus mirabilis strain R997 plasmid pR997, complete sequence	57742-57773	8	0.75
CP031105_1	1.2\|1275402\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275402-1275433	32	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	203634-203665	9	0.719
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	JN698994	Mycobacterium phage DS6A, complete genome	24764-24795	9	0.719
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	45733-45764	9	0.719
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP025432	Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence	92571-92602	9	0.719
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	AY526908	Bordetella phage BMP-1, complete genome	4333-4364	9	0.719
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NC_005357	Bordetella phage BPP-1, complete genome	4333-4364	9	0.719
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	AY526909	Bordetella phage BIP-1, complete genome	4333-4364	9	0.719
CP031105_2	2.1\|1301941\|32\|CP031105\|CRISPRCasFinder,CRT	1301941-1301972	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_KX528687	Acinetobacter lwoffii strain ED9-5a plasmid pALWED3.1, complete sequence	60757-60788	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP031977	Acinetobacter haemolyticus strain AN43 plasmid pAhaemAN43b, complete sequence	41217-41248	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP018638	Salmonella enterica subsp. enterica serovar Enteritidis strain 69-3861 plasmid pSE69-3861-1, complete sequence	697-728	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP031973	Acinetobacter haemolyticus strain AN59 plasmid pAhaemAN59c, complete sequence	41217-41248	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP045203	Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence	184766-184797	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP021429	Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence	54225-54256	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP040913	Acinetobacter pittii strain AB17H194 plasmid pAB17H194-2, complete sequence	46038-46069	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP030755	Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence	51662-51693	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	CP033526	Acinetobacter pittii strain 2014N05-125 plasmid p2014N05-125-1, complete sequence	26822-26853	9	0.719
CP031105_2	2.3\|1302063\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302063-1302094	32	NZ_CP025619	Acinetobacter schindleri strain SGAir0122 plasmid pSGAir0122, complete sequence	145953-145984	9	0.719
CP031105_2	2.4\|1302124\|32\|CP031105\|CRISPRCasFinder,CRT,PILER-CR	1302124-1302155	32	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	52197-52228	9	0.719
CP031105_1	1.5\|1275585\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275585-1275616	32	LN997844	Streptomyces reticuli genome assembly TUE45, plasmid : III	74068-74099	10	0.688
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NC_005241	Cupriavidus necator H16 megaplasmid pHG1, complete sequence	74612-74643	10	0.688
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP039289	Cupriavidus necator H16 plasmid pHG1, complete sequence	74612-74643	10	0.688
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NC_030916	Tsukamurella phage TPA4, complete genome	18471-18502	10	0.688
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	AB276040	Ralstonia phage RSA1 DNA, complete genome	989-1020	10	0.688
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NC_009382	Ralstonia phage phiRSA1, complete genome	989-1020	10	0.688
CP031105_1	1.11\|1275951\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275951-1275982	32	NZ_CP025433	Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence	97047-97078	10	0.688
CP031105_2	2.1\|1301941\|32\|CP031105\|CRISPRCasFinder,CRT	1301941-1301972	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	524692-524723	11	0.656
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP017947	Bosea sp. Tri-49 plasmid unnamed1, complete sequence	315738-315769	11	0.656
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	522528-522559	11	0.656
CP031105_1	1.6\|1275646\|32\|CP031105\|PILER-CR,CRISPRCasFinder,CRT	1275646-1275677	32	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	357216-357247	11	0.656

1. spacer 1.1|1275341|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

2. spacer 1.2|1275402|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgggcgtaccgcatcgcggacaacaagctga	Protospacer
.** ******** **************..**

3. spacer 1.5|1275585|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015609 (Bacillus safensis strain U14-5 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

gcagtggtgaggccgggaagcgcggttgagtc	CRISPR spacer
ggattggtcaggccgggaagcgcggttgccgc	Protospacer
* * **** *******************   *

4. spacer 1.5|1275585|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 6, identity: 0.812

gcagtggtgaggccgggaagcgcggttgagtc	CRISPR spacer
ggattggtcaggccgggaagcgcggttgccgc	Protospacer
* * **** *******************   *

5. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014659 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

6. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014659 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

7. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014686 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

8. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014686 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

9. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

10. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

11. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

12. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

13. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

14. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

15. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

16. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049702 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence) position: , mismatch: 7, identity: 0.781

-tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
gtggtc-tcgacgacacgggcggcgattttcaa	Protospacer
 **.**  *** ***** *************.

17. spacer 2.1|1301941|32|CP031105|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

18. spacer 1.2|1275402|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgcgcctaccggatcgcggacaaccgcacgg	Protospacer
.***** ****************** .  .*

19. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 8, identity: 0.75

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
tgatccgcgaggacaccggcgacgagctgtac	Protospacer
***** ***************.*** .* ...

20. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NC_008270 (Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence) position: , mismatch: 8, identity: 0.75

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
tgatcagccagggcaccggcggcggctacggc	Protospacer
******** ***.***********..* . *.

21. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 8, identity: 0.75

tgatcagcgaggacaccggcggcgattttcgt----	CRISPR spacer
tgatcagcaaggacaccgacggca----tcgcggcc	Protospacer
********.*********.****.    ***.

22. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

23. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

24. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

25. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

26. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

27. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

28. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

29. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

30. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

31. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

32. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

33. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

34. spacer 2.1|1301941|32|CP031105|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

35. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY433363 (Proteus mirabilis strain R997 plasmid pR997, complete sequence) position: , mismatch: 8, identity: 0.75

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgatggag	Protospacer
*** *********** ******** .*   *

36. spacer 1.2|1275402|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

acgcgcgtaccggatcgcggacaacaaattgc------	CRISPR spacer
tcgcgcggaccggatcgcggccaa------gccccgcg	Protospacer
 ****** ************ ***      **

37. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to JN698994 (Mycobacterium phage DS6A, complete genome) position: , mismatch: 9, identity: 0.719

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
ggaccagcgaggccaccggcggcggctacggg	Protospacer
 **.******** ***********..* . *

38. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
gcgcgacacgtccaggctgccacccgatgttg	Protospacer
 **    .*********** ********.**

39. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtttg	Protospacer
 .*******.** ************ .  **

40. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to AY526908 (Bordetella phage BMP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.

41. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NC_005357 (Bordetella phage BPP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.

42. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to AY526909 (Bordetella phage BIP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.

43. spacer 2.1|1301941|32|CP031105|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

44. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX528687 (Acinetobacter lwoffii strain ED9-5a plasmid pALWED3.1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

45. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031977 (Acinetobacter haemolyticus strain AN43 plasmid pAhaemAN43b, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

46. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018638 (Salmonella enterica subsp. enterica serovar Enteritidis strain 69-3861 plasmid pSE69-3861-1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

47. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031973 (Acinetobacter haemolyticus strain AN59 plasmid pAhaemAN59c, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

48. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045203 (Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggcg	Protospacer
*** *********** ******** .*

49. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021429 (Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

50. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040913 (Acinetobacter pittii strain AB17H194 plasmid pAB17H194-2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

51. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030755 (Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

52. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to CP033526 (Acinetobacter pittii strain 2014N05-125 plasmid p2014N05-125-1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggtg	Protospacer
*** *********** ******** .*

53. spacer 2.3|1302063|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025619 (Acinetobacter schindleri strain SGAir0122 plasmid pSGAir0122, complete sequence) position: , mismatch: 9, identity: 0.719

gaaacgccggttgaacgtcgtgcaaaaatcat	CRISPR spacer
gaaccgccggttgaaggtcgtgcatgacggcg	Protospacer
*** *********** ******** .*

54. spacer 2.4|1302124|32|CP031105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gactggtacggcccgtgggagcgtgtgatcgg	CRISPR spacer
gactggtccggccggtgggagcggctgccgaa	Protospacer
******* ***** *********  ** . ..

55. spacer 1.5|1275585|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to LN997844 (Streptomyces reticuli genome assembly TUE45, plasmid : III) position: , mismatch: 10, identity: 0.688

gcagtggtgaggccgggaagcgcggttgagtc	CRISPR spacer
tgcgtggtgcgcccgggaagcgcggtgtcgca	Protospacer
   ****** * **************   *.

56. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NC_005241 (Cupriavidus necator H16 megaplasmid pHG1, complete sequence) position: , mismatch: 10, identity: 0.688

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
tgatcagcgcggccaccggcggcagcgtgtag	Protospacer
********* ** **********... * ..

57. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039289 (Cupriavidus necator H16 plasmid pHG1, complete sequence) position: , mismatch: 10, identity: 0.688

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
tgatcagcgcggccaccggcggcagcgtgtag	Protospacer
********* ** **********... * ..

58. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NC_030916 (Tsukamurella phage TPA4, complete genome) position: , mismatch: 10, identity: 0.688

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
cgatcggcgaggacaccggcgtcggcctgatc	Protospacer
.****.*************** **...*   .

59. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to AB276040 (Ralstonia phage RSA1 DNA, complete genome) position: , mismatch: 10, identity: 0.688

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
cgatcagccaggacaccgccggcgcccatgtc	Protospacer
.******* ********* ***** .. *  .

60. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NC_009382 (Ralstonia phage phiRSA1, complete genome) position: , mismatch: 10, identity: 0.688

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
cgatcagccaggacaccgccggcgcccatgtc	Protospacer
.******* ********* ***** .. *  .

61. spacer 1.11|1275951|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025433 (Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence) position: , mismatch: 10, identity: 0.688

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtctg	Protospacer
 .*******.** ************ .  .*

62. spacer 2.1|1301941|32|CP031105|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******

63. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
tgatcagcgcggccaccggcggcagcgagtac	Protospacer
********* ** **********...   ...

64. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017947 (Bosea sp. Tri-49 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
tgatcagcgaggaccccggccgctggcgcgag	Protospacer
************** ***** ** . . . .

65. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
tgatcagcgcggccaccggcggcagcgagtac	Protospacer
********* ** **********...   ...

66. spacer 1.6|1275646|32|CP031105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 11, identity: 0.656

tgatcagcgaggacaccggcggcgattttcgt	CRISPR spacer
ccgtcagcgaggacatcggcgccgatcagacg	Protospacer
. .************.***** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

349739 : 448712

106

Escherichia_phage(49.02%)

integrase,tail,capsid,protease,holin,transposase,portal,head,terminase

attL 375370:375386|attR 442836:442852

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF68397.1\|349739_350948_-\|transposase	transposase	A0A077SL42	Escherichia_phage	1.4e-208	93.5
AXF68398.1\|352016_352145_-	antitermination protein	NA	NA	NA	NA
AXF68399.1\|352359_353157_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXF68400.1\|353166_353718_-	kinase inhibitor	NA	NA	NA	NA
AXF68401.1\|353886_354219_-	multidrug SMR transporter	NA	NA	NA	NA
AXF68402.1\|354552_354867_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
AXF68403.1\|355858_357517_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
AXF68404.1\|357509_358505_+	flagellar motor switch protein FliG	NA	NA	NA	NA
AXF68405.1\|358814_359501_+	flagellar assembly protein FliH	NA	NA	NA	NA
AXF68406.1\|359500_360874_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
AXF68407.1\|360892_361336_+	flagellar protein FliJ	NA	NA	NA	NA
AXF68408.1\|361332_362460_+	flagellar hook length control protein FliK	NA	NA	NA	NA
AXF68409.1\|362564_363029_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
AXF68410.1\|363033_364038_+	flagellar motor switch protein FliM	NA	NA	NA	NA
AXF68411.1\|364034_364448_+	flagellar motor switch protein FliN	NA	NA	NA	NA
AXF68412.1\|364450_364816_+	flagellar protein FliO	NA	NA	NA	NA
AXF68413.1\|364815_365553_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA
AXF68414.1\|365562_365832_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
AXF68415.1\|365840_366626_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
AXF68416.1\|366915_367539_+	transcriptional regulator RcsA	NA	NA	NA	NA
AXF68417.1\|367582_367825_-	protein DsrB	NA	NA	NA	NA
AXF68418.1\|367933_368161_+	DUF2525 domain-containing protein	NA	NA	NA	NA
AXF68419.1\|368458_369277_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
AXF68420.1\|369273_370968_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
AXF68421.1\|370888_371077_-	hypothetical protein	NA	NA	NA	NA
AXF68422.1\|371177_371360_-	DUF2158 domain-containing protein	NA	NA	NA	NA
AXF68423.1\|371438_372356_-	DUF808 domain-containing protein	NA	NA	NA	NA
AXF68424.1\|372528_373449_+	EamA family transporter	NA	NA	NA	NA
AXF68425.1\|373437_373908_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	4.0e-34	48.3
AXF68426.1\|373888_375307_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-101	54.8
375370:375386	attL	NA	NA	NA	NA
AXF68427.1\|377415_378774_-	HAMP domain-containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	3.9e-05	19.4
AXF72464.1\|378773_379445_-	DNA-binding response regulator HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
AXF68428.1\|379577_379991_+	5-hydroxyisourate hydrolase	NA	NA	NA	NA
AXF68429.1\|380099_381104_+	sulfoxide reductase	NA	NA	NA	NA
AXF68430.1\|381104_381740_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA
AXF68431.1\|381996_382647_+	metal-binding protein ZinT	NA	NA	NA	NA
AXF68432.1\|382989_383520_+	cytochrome b561	A0A0U2QLA7	Escherichia_phage	2.5e-56	99.1
AXF68433.1\|383542_383785_+	hypothetical protein	NA	NA	NA	NA
AXF68434.1\|384499_384787_-	hypothetical protein	NA	NA	NA	NA
AXF68435.1\|384800_385502_-\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	4.1e-59	62.3
AXF68436.1\|385511_385793_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	9.1e-18	47.8
AXF68437.1\|385792_388189_-\|tail	phage tail protein	I1TE37	Escherichia_virus	2.8e-83	41.0
AXF68438.1\|388253_388853_-	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	4.8e-101	92.0
AXF68439.1\|388920_392400_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.2
AXF68440.1\|392460_393132_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	9.9e-103	97.8
AXF68441.1\|393029_393773_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.8e-153	99.6
AXF68442.1\|393777_394476_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.0e-130	97.0
AXF68443.1\|394475_394832_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
AXF68444.1\|394809_398037_-\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.1
AXF72465.1\|398083_398344_-	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	7.1e-41	98.8
AXF68445.1\|398385_398772_-\|tail	phage tail protein	A0A1B5FP91	Escherichia_phage	6.8e-64	100.0
AXF68446.1\|398771_399476_-\|tail	phage tail protein	A0A1B5FP82	Escherichia_phage	1.5e-117	96.2
AXF68447.1\|399535_399880_-	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	4.2e-57	100.0
AXF68448.1\|399876_400326_-	hypothetical protein	S4TR46	Salmonella_phage	1.0e-63	79.9
AXF68449.1\|400322_400661_-\|head,tail	head-tail adaptor protein	A0A1B5FP90	Escherichia_phage	1.6e-56	99.1
AXF68450.1\|400669_400975_-\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	9.2e-40	100.0
AXF68451.1\|400986_401175_-	hypothetical protein	A0A1B5FP98	Escherichia_phage	1.6e-26	98.4
AXF68452.1\|401226_402432_-\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	1.2e-223	99.3
AXF68453.1\|402446_403133_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.1e-124	99.6
AXF68454.1\|403074_404316_-\|portal	phage portal protein	U5P411	Shigella_phage	5.9e-242	99.5
AXF68455.1\|404315_404498_-	hypothetical protein	A0A1B5FP99	Escherichia_phage	1.1e-24	96.7
AXF68456.1\|404509_406267_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.3
AXF68457.1\|406266_406749_-\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	5.7e-84	97.5
AXF68458.1\|406897_407248_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.4e-63	96.6
AXF68459.1\|407386_407926_+	hypothetical protein	NA	NA	NA	NA
AXF68460.1\|407931_408198_-	hypothetical protein	NA	NA	NA	NA
AXF68461.1\|408415_408601_-	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	6.4e-20	80.3
AXF68462.1\|408817_409351_-	lysozyme	Q08J98	Stx2-converting_phage	3.6e-100	94.4
AXF68463.1\|409414_409765_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	2.9e-37	95.2
AXF68464.1\|409769_409985_-\|holin	holin	M1FN85	Enterobacteria_phage	5.3e-34	98.6
AXF68465.1\|410780_411470_-	antiterminator	I6PDF8	Cronobacter_phage	9.6e-61	51.1
AXF68466.1\|411466_411832_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.2e-39	67.5
AXF68467.1\|411832_412888_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.5e-89	48.1
AXF68468.1\|412889_413168_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.1e-12	50.0
AXF68469.1\|413464_413857_-	hypothetical protein	NA	NA	NA	NA
AXF68470.1\|414000_414213_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
AXF68471.1\|414447_414963_-	hypothetical protein	A0A076GCN9	Escherichia_phage	2.8e-36	75.5
AXF68472.1\|415128_415311_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.2e-26	96.7
AXF68473.1\|415404_415761_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	3.0e-58	98.3
AXF68474.1\|415814_416240_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-63	92.0
AXF68475.1\|416280_417351_-	phage replisome organizer	A0A088CD36	Shigella_phage	3.8e-64	65.7
AXF68476.1\|417422_417848_-	Rha family transcriptional regulator	NA	NA	NA	NA
AXF68477.1\|417844_418072_-	cell division protein	NA	NA	NA	NA
AXF68478.1\|418168_418816_+	LexA family transcriptional regulator	A0A1P8DTH0	Proteus_phage	8.9e-08	25.9
AXF72466.1\|419093_419249_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.0e-07	53.2
AXF68479.1\|419208_419379_+	hypothetical protein	NA	NA	NA	NA
AXF68480.1\|419408_419627_+	hypothetical protein	NA	NA	NA	NA
AXF68481.1\|420194_420383_+	cell division inhibition protein DicB	NA	NA	NA	NA
AXF68482.1\|420379_420571_+	DUF1482 family protein	NA	NA	NA	NA
AXF68483.1\|420664_423136_+	exonuclease	K7PLW7	Enterobacteria_phage	3.8e-59	60.9
AXF68484.1\|423194_423398_+	DUF4224 domain-containing protein	NA	NA	NA	NA
AXF68485.1\|423397_424423_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	3.4e-102	57.9
AXF72467.1\|424658_425456_+	protein MtfA	NA	NA	NA	NA
AXF68486.1\|425918_433022_+	inverse autotransporter adhesin-like protein YeeJ	NA	NA	NA	NA
AXF68487.1\|434650_435967_+	shikimate transporter	NA	NA	NA	NA
AXF68488.1\|436068_437523_+	AMP nucleosidase	NA	NA	NA	NA
AXF68489.1\|437865_438582_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXF68490.1\|439211_440699_-	FMN/FAD transporter	NA	NA	NA	NA
AXF68491.1\|440972_441923_-	transcriptional regulator	NA	NA	NA	NA
AXF68492.1\|442024_442942_-	nitrogen assimilation regulatory protein nac	NA	NA	NA	NA
442836:442852	attR	NA	NA	NA	NA
AXF68493.1\|443399_444332_-	L,D-transpeptidase	NA	NA	NA	NA
AXF68494.1\|444396_445476_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
AXF68495.1\|445487_446231_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
AXF68496.1\|446227_446773_-	adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase	NA	NA	NA	NA
AXF68497.1\|446924_447047_-	cobalamin biosynthesis protein	NA	NA	NA	NA
AXF68498.1\|447438_448712_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7

DBSCAN-SWA_2

611691 : 619999

Enterobacteria_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF68638.1\|611691_613692_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
AXF68639.1\|613816_614278_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	5.4e-76	99.3
AXF68640.1\|614317_614788_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
AXF68641.1\|614834_615554_-	two-component system response regulator YehT	NA	NA	NA	NA
AXF68642.1\|615550_617236_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AXF68643.1\|617457_618189_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AXF68644.1\|618248_618356_+	hypothetical protein	NA	NA	NA	NA
AXF68645.1\|618336_619068_-	ABC transporter permease	NA	NA	NA	NA
AXF68646.1\|619072_619999_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_3

888032 : 898062

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF68879.1\|888032_891530_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	3.5e-98	34.8
AXF68880.1\|891899_892106_+	alkaline phosphatase	NA	NA	NA	NA
AXF68881.1\|892390_892537_-	addiction module toxin RelE	NA	NA	NA	NA
AXF68882.1\|892563_892920_+\|transposase	IS3 family transposase	U5P4I9	Shigella_phage	2.6e-33	92.5
AXF68883.1\|893204_894418_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
AXF68884.1\|894443_894635_-	hypothetical protein	A0A0N7BVE9	Escherichia_phage	5.2e-25	93.2
AXF68885.1\|896666_897485_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.7e-46	39.3
AXF68886.1\|897576_898062_+	antirestriction protein	A9J566	Pseudomonas_phage	4.0e-13	31.0

DBSCAN-SWA_4

1042038 : 1048252

Escherichia_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF69014.1\|1042038_1042191_-	hypothetical protein	G9L6F3	Escherichia_phage	1.7e-18	96.0
AXF69015.1\|1042208_1042385_+	DUF2633 family protein	G9L6F2	Escherichia_phage	3.8e-22	96.4
AXF69016.1\|1042431_1043593_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-51	40.6
AXF69017.1\|1043722_1043869_+	succinate dehydrogenase	NA	NA	NA	NA
AXF69018.1\|1043971_1044490_+	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	8.5e-62	99.4
AXF69019.1\|1044505_1045045_+	hypothetical protein	G9L6F0	Escherichia_phage	3.8e-44	94.4
AXF69020.1\|1045139_1046717_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
AXF69021.1\|1046785_1048252_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1

DBSCAN-SWA_5

1251815 : 1258955

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF69205.1\|1251815_1254377_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6
AXF69206.1\|1254482_1255139_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.1e-48	45.8
AXF69207.1\|1255189_1255957_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
AXF69208.1\|1256152_1257061_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AXF69209.1\|1257057_1258320_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.4
AXF69210.1\|1258316_1258955_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_6

2501435 : 2582051

Escherichia_phage(32.0%)

integrase,tail,capsid,protease,tRNA,holin,plate,lysis,transposase,portal,head,terminase

attL 2532109:2532155|attR 2566108:2566154

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF70363.1\|2501435_2501873_+\|tRNA	D-aminoacyl-tRNA deacylase	NA	NA	NA	NA
AXF70364.1\|2501869_2502859_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXF70365.1\|2502922_2503831_-	alpha/beta hydrolase	NA	NA	NA	NA
AXF70366.1\|2504059_2504371_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXF70367.1\|2504371_2504662_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXF72537.1\|2505272_2505485_+	CopG family transcriptional regulator	NA	NA	NA	NA
AXF70368.1\|2505727_2505946_+	hypothetical protein	NA	NA	NA	NA
AXF70369.1\|2506275_2507205_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
AXF70370.1\|2507201_2507837_-	formate dehydrogenase cytochrome b556(fdo) subunit	NA	NA	NA	NA
AXF70371.1\|2507833_2508736_-	formate dehydrogenase-O iron-sulfur subunit	NA	NA	NA	NA
AXF70372.1\|2508748_2511799_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	1.1e-07	23.8
AXF70373.1\|2511802_2512057_+	hypothetical protein	NA	NA	NA	NA
AXF70374.1\|2511992_2512826_+	sulfurtransferase FdhD	NA	NA	NA	NA
AXF70375.1\|2512978_2514019_+	DUF3829 domain-containing protein	NA	NA	NA	NA
AXF70376.1\|2514068_2515817_-	HTH domain-containing protein	NA	NA	NA	NA
AXF70377.1\|2515816_2516887_-	aminopeptidase	NA	NA	NA	NA
AXF70378.1\|2516876_2518328_-	PTS fructose-like transporter subunit IIBC	NA	NA	NA	NA
AXF70379.1\|2518338_2518785_-	fructose-like phosphotransferase enzyme IIA component	NA	NA	NA	NA
AXF70380.1\|2519097_2519412_-	L-rhamnose mutarotase	NA	NA	NA	NA
AXF70381.1\|2519421_2520246_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
AXF70382.1\|2520487_2521747_-	L-rhamnose isomerase	NA	NA	NA	NA
AXF70383.1\|2521743_2523213_-	rhamnulokinase	NA	NA	NA	NA
AXF70384.1\|2523500_2524337_+	transcriptional activator RhaS	NA	NA	NA	NA
AXF70385.1\|2524320_2525259_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
AXF70386.1\|2525255_2526290_-	rhamnose/proton symporter RhaT	NA	NA	NA	NA
AXF70387.1\|2526574_2527195_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	4.9e-64	59.8
AXF70388.1\|2527369_2527477_+	2-keto-3-deoxygluconate permease	NA	NA	NA	NA
AXF70389.1\|2527454_2528438_+	2-keto-3-deoxygluconate permease	NA	NA	NA	NA
AXF70390.1\|2528586_2529261_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
AXF70391.1\|2529366_2530740_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.8e-16	25.9
AXF70392.1\|2530736_2531435_-	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
AXF72538.1\|2531584_2532085_+	periplasmic protein CpxP	NA	NA	NA	NA
2532109:2532155	attL	NA	NA	NA	NA
AXF70393.1\|2532271_2533252_-\|integrase	site-specific integrase	S4TP66	Salmonella_phage	2.3e-185	99.4
AXF70394.1\|2533321_2533615_-	helix-turn-helix domain-containing protein	Q1JS37	Enterobacteria_phage	1.0e-48	99.0
AXF70395.1\|2533751_2534024_+	hypothetical protein	Q1JS36	Enterobacteria_phage	1.4e-47	100.0
AXF70396.1\|2534193_2534694_+	replication protein B	S4TTB7	Salmonella_phage	1.7e-91	99.4
AXF70397.1\|2534757_2534982_+	DUF2732 family protein	S4TP68	Salmonella_phage	8.8e-32	97.3
AXF70398.1\|2534981_2535281_+	hypothetical protein	S4TUD1	Salmonella_phage	2.5e-45	99.0
AXF70399.1\|2535283_2535508_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
AXF70400.1\|2535504_2535780_+	hypothetical protein	Q858T5	Yersinia_virus	3.8e-45	100.0
AXF70401.1\|2535769_2538055_+	replication endonuclease	Q7Y4B8	Escherichia_virus	0.0e+00	98.8
AXF72539.1\|2538054_2538507_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	6.1e-80	96.7
AXF70402.1\|2538506_2538713_+	hypothetical protein	Q2P9X3	Enterobacteria_phage	2.4e-31	97.0
AXF70403.1\|2538955_2539894_+	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	3.1e-187	100.0
AXF70404.1\|2539890_2540928_-	hypothetical protein	Q7Y4B4	Escherichia_virus	4.6e-200	100.0
AXF70405.1\|2540920_2541994_-	hypothetical protein	Q7Y4B3	Escherichia_virus	1.2e-203	100.0
AXF70406.1\|2542409_2543444_-\|portal	phage portal protein	Q858W8	Yersinia_virus	2.4e-201	99.7
AXF70407.1\|2543443_2545216_-	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	100.0
AXF70408.1\|2545389_2546244_+\|capsid	capsid scaffolding protein	Q94MB7	Escherichia_virus	1.7e-139	89.4
AXF70409.1\|2546302_2547376_+\|capsid	phage major capsid protein, P2 family	Q778Z0	Enterobacteria_phage	2.5e-201	99.7
AXF70410.1\|2547379_2548123_+\|terminase	terminase	Q94MF3	Enterobacteria_phage	5.1e-124	99.2
AXF70411.1\|2548222_2548732_+\|head	head completion/stabilization protein	A0A0F7L9Y3	Escherichia_phage	1.9e-90	100.0
AXF70412.1\|2548731_2548935_+\|tail	phage tail protein	A0A0F7LCK1	Escherichia_phage	8.8e-31	98.5
AXF70413.1\|2548938_2549220_+\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
AXF70414.1\|2549219_2549717_+	lysozyme	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
AXF70415.1\|2549731_2550157_+	protein lysA	A0A0F7LBP4	Escherichia_phage	1.8e-62	100.0
AXF70416.1\|2550144_2550570_+\|lysis	LysB family phage lysis regulatory protein	A0A0F7L9Y0	Escherichia_phage	4.5e-69	100.0
AXF70417.1\|2550541_2550715_+\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	1.5e-23	93.0
AXF70418.1\|2550677_2551145_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	9.7e-81	97.4
AXF70419.1\|2551137_2551590_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
AXF70420.1\|2551656_2552292_+\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	1.3e-112	99.5
AXF70421.1\|2552288_2552636_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
AXF70422.1\|2552640_2553549_+\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	1.5e-162	100.0
AXF70423.1\|2553541_2554072_+\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	1.3e-102	99.4
AXF70424.1\|2554082_2556092_+\|tail	phage tail protein	Q7Y4D4	Escherichia_virus	0.0e+00	99.3
AXF70425.1\|2556095_2556623_+\|tail	tail fiber assembly protein	Q858V3	Yersinia_virus	1.8e-91	95.4
AXF70426.1\|2556674_2557948_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7
AXF70427.1\|2558174_2559074_+	hypothetical protein	Q7Y4D2	Escherichia_virus	6.2e-169	100.0
AXF70428.1\|2559393_2560584_+\|tail	phage tail protein	Q7Y4D1	Escherichia_virus	8.1e-225	99.7
AXF70429.1\|2560596_2561115_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
AXF70430.1\|2561171_2561447_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AXF72540.1\|2561479_2561599_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
AXF70431.1\|2561591_2564039_+\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	0.0e+00	99.9
AXF70432.1\|2564053_2564533_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	5.1e-85	100.0
AXF70433.1\|2564532_2565696_+	phage late control D family protein	Q7Y4C6	Escherichia_virus	1.3e-206	98.4
AXF70434.1\|2565741_2565996_+	DNA-binding transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	6.1e-45	100.0
AXF70435.1\|2566232_2567135_+	cation-efflux pump FieF	NA	NA	NA	NA
2566108:2566154	attR	NA	NA	NA	NA
AXF70436.1\|2567315_2568278_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA
AXF70437.1\|2568597_2569587_+	sulfate-binding protein	NA	NA	NA	NA
AXF70438.1\|2569693_2570449_+	CDP-diacylglycerol pyrophosphatase	NA	NA	NA	NA
AXF70439.1\|2570503_2571271_-	triose-phosphate isomerase	NA	NA	NA	NA
AXF70440.1\|2571378_2571978_-	DUF1454 family protein	NA	NA	NA	NA
AXF70441.1\|2572078_2572519_+	DUF805 domain-containing protein	NA	NA	NA	NA
AXF70442.1\|2572730_2573030_+	DUF406 family protein	NA	NA	NA	NA
AXF70443.1\|2573056_2573485_+	universal stress protein D	NA	NA	NA	NA
AXF70444.1\|2573489_2574236_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AXF70445.1\|2574332_2575343_-	fructose 1,6-bisphosphatase	NA	NA	NA	NA
AXF70446.1\|2575477_2576986_-	glycerol kinase	NA	NA	NA	NA
AXF70447.1\|2577008_2577854_-	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
AXF70448.1\|2578278_2578524_+	cell division protein ZapB	NA	NA	NA	NA
AXF70449.1\|2578608_2579094_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
AXF70450.1\|2579186_2580113_-	prenyltransferase	NA	NA	NA	NA
AXF70451.1\|2580179_2581511_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
AXF70452.1\|2581520_2582051_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_7

3353227 : 3360417

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF71126.1\|3353227_3354283_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	9.1e-119	61.1
AXF71127.1\|3354570_3355674_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AXF71128.1\|3355685_3356939_+	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
AXF71129.1\|3357294_3358509_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	1.3e-132	56.2
AXF71130.1\|3358673_3358889_-	excinuclease ABC subunit B	NA	NA	NA	NA
AXF71131.1\|3358936_3359140_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	4.7e-08	50.9
AXF71132.1\|3359583_3360417_+	antA/AntB antirepressor family protein	G9L6G1	Escherichia_phage	5.3e-21	47.5

DBSCAN-SWA_8

3628036 : 3682203

Enterobacteria_phage(46.15%)

tail,capsid,tRNA,lysis,portal,holin,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF71377.1\|3628036_3629131_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
AXF71378.1\|3629199_3630126_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
AXF71379.1\|3630355_3630838_+	ureidoglycolate lyase	NA	NA	NA	NA
AXF71380.1\|3630915_3631731_+	transcriptional regulator	NA	NA	NA	NA
AXF71381.1\|3631820_3633602_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	6.0e-38	27.0
AXF71382.1\|3633614_3634391_+	hydroxypyruvate isomerase	NA	NA	NA	NA
AXF71383.1\|3634490_3635369_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
AXF71384.1\|3635537_3636992_+	putative allantoin permease	NA	NA	NA	NA
AXF71385.1\|3637051_3638413_+	allantoinase AllB	NA	NA	NA	NA
AXF71386.1\|3638469_3639771_+	uracil/xanthine transporter	NA	NA	NA	NA
AXF71387.1\|3639792_3640938_+	glycerate 3-kinase	W6LM47	Streptococcus_phage	1.1e-48	41.9
AXF71388.1\|3641066_3641852_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA
AXF71389.1\|3641862_3643098_-	allantoate amidohydrolase	NA	NA	NA	NA
AXF71390.1\|3643119_3644169_-	ureidoglycolate dehydrogenase (NAD(+))	NA	NA	NA	NA
AXF71391.1\|3644485_3646153_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
AXF71392.1\|3646162_3647422_+	DUF1116 domain-containing protein	NA	NA	NA	NA
AXF71393.1\|3647432_3648248_+	DUF2877 domain-containing protein	NA	NA	NA	NA
AXF71394.1\|3648244_3649138_+	carbamate kinase	NA	NA	NA	NA
AXF71395.1\|3649332_3650400_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AXF71396.1\|3650396_3650906_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
AXF71397.1\|3651023_3651746_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
AXF71398.1\|3651748_3652243_-	peptidylprolyl isomerase B	NA	NA	NA	NA
AXF71399.1\|3652416_3653802_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
AXF71400.1\|3653837_3654359_-	metal-dependent hydrolase	NA	NA	NA	NA
AXF71401.1\|3654466_3654679_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
AXF71402.1\|3654680_3655547_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	38.2
AXF71403.1\|3656027_3656570_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
AXF71404.1\|3656789_3657482_+	molecular chaperone FimC	NA	NA	NA	NA
AXF71405.1\|3660133_3661141_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
AXF71406.1\|3661151_3661667_+	fimbriae assembly protein	NA	NA	NA	NA
AXF71407.1\|3661669_3662302_-	DNA-binding response regulator	NA	NA	NA	NA
AXF71408.1\|3663655_3664111_-	DNA-binding protein	U5P4J3	Shigella_phage	3.4e-62	83.3
AXF71409.1\|3664026_3664332_-	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
AXF71410.1\|3664331_3664694_-	hypothetical protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
AXF71411.1\|3664684_3665221_-	HD family hydrolase	U5P0T3	Shigella_phage	4.8e-100	98.3
AXF71412.1\|3665348_3666173_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
AXF71413.1\|3666238_3666601_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
AXF72579.1\|3667026_3667587_+	hypothetical protein	NA	NA	NA	NA
AXF71414.1\|3667712_3668096_+	antitermination protein	A0A088CD47	Shigella_phage	4.0e-56	84.2
AXF71415.1\|3668285_3669383_-	porin	Q1MVN1	Enterobacteria_phage	4.8e-155	76.3
AXF71416.1\|3669971_3670187_+\|holin	holin	A5LH82	Enterobacteria_phage	3.4e-33	98.6
AXF71417.1\|3670186_3670684_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
AXF71418.1\|3670680_3671142_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	1.7e-74	98.0
AXF71419.1\|3671173_3671467_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
AXF71420.1\|3671757_3672168_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.7e-71	98.5
AXF71421.1\|3672453_3672660_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
AXF71422.1\|3672824_3673019_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	1.5e-27	98.4
AXF72581.1\|3673166_3673268_+	hypothetical protein	NA	NA	NA	NA
AXF71423.1\|3673407_3673953_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	5.2e-94	98.3
AXF71424.1\|3673927_3675853_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.8
AXF71425.1\|3675849_3676056_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	1.3e-29	98.5
AXF71426.1\|3676052_3676412_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.6e-54	96.2
AXF71427.1\|3676506_3677040_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.1e-92	93.8
AXF71428.1\|3677012_3677150_+\|capsid	nucleocapsid protein	NA	NA	NA	NA
AXF72580.1\|3677094_3677721_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXF71429.1\|3677819_3678125_+\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
AXF71430.1\|3679812_3680274_-	DUF1795 domain-containing protein	NA	NA	NA	NA
AXF71431.1\|3680301_3682203_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.7e-27	25.7

DBSCAN-SWA_9

4483125 : 4500285

Escherichia_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF72614.1\|4483125_4484358_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
AXF72176.1\|4484612_4485596_+	zinc transporter ZntB	NA	NA	NA	NA
AXF72177.1\|4485870_4486044_+	hypothetical protein	NA	NA	NA	NA
AXF72178.1\|4486073_4487447_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.6e-52	33.1
AXF72179.1\|4487575_4488511_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.7e-146	98.4
AXF72180.1\|4488562_4489798_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.6e-239	98.5
AXF72181.1\|4489799_4490015_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
AXF72616.1\|4490093_4490303_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
AXF72615.1\|4490295_4490490_-	restriction alleviation and modification enhancement protein	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
AXF72182.1\|4490546_4491356_-	DNA recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
AXF72183.1\|4491348_4493949_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	7.9e-249	63.6
AXF72184.1\|4494050_4494326_-	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
AXF72617.1\|4494400_4494571_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
AXF72185.1\|4494570_4494792_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	1.7e-35	97.3
AXF72618.1\|4494920_4495199_+	hypothetical protein	NA	NA	NA	NA
AXF72186.1\|4495233_4495722_+	superinfection exclusion protein B	NA	NA	NA	NA
AXF72187.1\|4495718_4495874_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.1e-08	55.3
AXF72188.1\|4495884_4496064_-	hypothetical protein	NA	NA	NA	NA
AXF72189.1\|4496051_4496270_-	hypothetical protein	NA	NA	NA	NA
AXF72190.1\|4496306_4496726_-	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	5.5e-19	46.5
AXF72191.1\|4496805_4497060_+	DNA-binding protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
AXF72192.1\|4497056_4497479_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	5.0e-68	92.1
AXF72193.1\|4497556_4498345_+	hypothetical protein	G9L6A8	Escherichia_phage	1.4e-42	65.7
AXF72194.1\|4498351_4499098_+	DNA replication protein DnaC	V5UQI5	Shigella_phage	1.3e-114	80.9
AXF72195.1\|4499120_4499846_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	6.1e-82	64.8
AXF72196.1\|4499862_4500285_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-60	86.9

DBSCAN-SWA_10

4503453 : 4517261

Escherichia_phage(41.67%)

lysis,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF72200.1\|4503453_4504053_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	7.2e-105	91.5
AXF72201.1\|4504052_4504343_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	7.4e-47	88.5
AXF72202.1\|4504339_4504882_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.8e-77	76.3
AXF72619.1\|4506167_4506383_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	9.0e-34	100.0
AXF72203.1\|4506382_4506880_+	lysozyme	M1FJA0	Enterobacteria_phage	1.6e-89	97.0
AXF72204.1\|4507096_4507282_+	Spanin from lambdoid prophage Rac, outer membrane subunit	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
AXF72205.1\|4507478_4508936_+	potassium transporter TrkG	NA	NA	NA	NA
AXF72206.1\|4508874_4509156_+	hypothetical protein	NA	NA	NA	NA
AXF72207.1\|4509073_4509862_+	transcriptional regulator	R4TG31	Halovirus	3.3e-49	40.7
AXF72208.1\|4511554_4512154_+	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	5.4e-100	90.5
AXF72209.1\|4512218_4514594_+\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	1.4e-167	69.3
AXF72210.1\|4514593_4514899_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.4e-16	52.8
AXF72211.1\|4514895_4516168_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7
AXF72212.1\|4516220_4517261_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	1.6e-160	84.1

DBSCAN-SWA_11

4728567 : 4779002

Enterobacteria_phage(51.02%)

tail,protease,lysis,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF72387.1\|4728567_4730028_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.5e-42	29.8
AXF72388.1\|4730116_4731400_-	MFS transporter	NA	NA	NA	NA
AXF72389.1\|4732185_4732419_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	3.2e-32	87.0
AXF72390.1\|4732737_4733328_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.8e-24	35.9
AXF72391.1\|4733425_4733515_-	hypothetical protein	K7PMH7	Enterobacteria_phage	1.1e-06	82.8
AXF72629.1\|4733555_4733849_-	hypothetical protein	NA	NA	NA	NA
AXF72392.1\|4733891_4734932_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.9e-125	67.6
AXF72393.1\|4734941_4735223_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	9.1e-18	48.9
AXF72394.1\|4735219_4737607_-\|tail	phage tail protein	A0A0E3M194	Enterobacteria_phage	9.9e-105	48.5
AXF72395.1\|4737665_4741061_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	89.4
AXF72396.1\|4741121_4741769_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.7e-113	98.1
AXF72397.1\|4741666_4742410_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.4
AXF72398.1\|4742415_4743114_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.1e-131	97.4
AXF72399.1\|4743123_4743453_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
AXF72400.1\|4743452_4746509_-\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	0.0e+00	98.1
AXF72401.1\|4746480_4746810_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
AXF72630.1\|4746818_4747205_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	3.3e-66	100.0
AXF72402.1\|4747265_4748009_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.6e-130	98.0
AXF72631.1\|4748019_4748421_-\|tail	phage tail protein	A5LH34	Enterobacteria_phage	1.9e-72	99.2
AXF72403.1\|4748417_4749008_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
AXF72404.1\|4749019_4749295_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	6.6e-45	98.9
AXF72405.1\|4749287_4749656_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.2e-51	99.1
AXF72406.1\|4749697_4751725_-\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.5
AXF72407.1\|4751669_4753178_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	6.6e-288	99.4
AXF72408.1\|4753177_4753390_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
AXF72409.1\|4753386_4755489_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
AXF72410.1\|4755488_4755983_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
AXF72411.1\|4756545_4756752_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
AXF72412.1\|4756906_4757107_+	hypothetical protein	C6ZCX4	Enterobacteria_phage	5.0e-10	69.4
AXF72413.1\|4757052_4757463_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.0e-62	89.0
AXF72414.1\|4757614_4757788_-	protein GnsB	NA	NA	NA	NA
AXF72415.1\|4757959_4758232_-	hypothetical protein	NA	NA	NA	NA
AXF72416.1\|4758262_4758451_-	cold-shock protein	NA	NA	NA	NA
AXF72417.1\|4758461_4758674_-	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AXF72418.1\|4759037_4759535_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
AXF72419.1\|4759531_4760065_-	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AXF72420.1\|4760061_4760373_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AXF72421.1\|4760377_4760593_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AXF72422.1\|4761346_4761562_-	cold-shock protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
AXF72423.1\|4762237_4762990_-	antitermination protein	Q8SBE4	Shigella_phage	2.1e-130	94.8
AXF72424.1\|4763003_4764053_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.7e-112	57.3
AXF72425.1\|4764054_4764333_-	hypothetical protein	NA	NA	NA	NA
AXF72426.1\|4764399_4764651_-	hypothetical protein	NA	NA	NA	NA
AXF72427.1\|4764867_4765080_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
AXF72428.1\|4765635_4766301_-	hypothetical protein	NA	NA	NA	NA
AXF72429.1\|4766354_4766588_-	methyltransferase	I6S1S6	Salmonella_phage	2.9e-17	67.9
AXF72430.1\|4766584_4767007_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.3e-65	92.8
AXF72431.1\|4767047_4768067_-	hypothetical protein	U5P0A0	Shigella_phage	5.2e-55	60.2
AXF72432.1\|4767993_4768515_-	hypothetical protein	NA	NA	NA	NA
AXF72433.1\|4768498_4768726_-	transcriptional regulator	NA	NA	NA	NA
AXF72434.1\|4768806_4769214_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-32	51.9
AXF72435.1\|4769382_4769535_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
AXF72632.1\|4769546_4769912_+	hypothetical protein	NA	NA	NA	NA
AXF72436.1\|4769880_4770081_-	hypothetical protein	NA	NA	NA	NA
AXF72437.1\|4770592_4771447_+	transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	3.6e-65	63.2
AXF72438.1\|4771457_4771646_+	cell division inhibitor	NA	NA	NA	NA
AXF72439.1\|4771642_4771834_+	DUF1482 family protein	NA	NA	NA	NA
AXF72440.1\|4771926_4774398_+	exonuclease	K7PLW7	Enterobacteria_phage	5.0e-59	60.9
AXF72441.1\|4774470_4774722_+	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AXF72442.1\|4774741_4776037_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	1.9e-155	62.3
AXF72443.1\|4776062_4776167_-	transporter	NA	NA	NA	NA
AXF72444.1\|4776224_4777244_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	7.4e-17	26.2
AXF72445.1\|4777255_4778470_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AXF72446.1\|4778450_4778639_-	hypothetical protein	NA	NA	NA	NA
AXF72447.1\|4778675_4779002_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3021 : 14113

Enterobacteria_phage(42.86%)

transposase,integrase

attL 1171:1182|attR 12389:12400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1171:1182	attL	NA	NA	NA	NA
AXF73085.1\|3021_3552_-	dihydrofolate reductase	A0A1B2IAU3	Erwinia_phage	1.7e-09	33.3
AXF73086.1\|3653_4667_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AXF73087.1\|4605_5220_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AXF73088.1\|5345_5906_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AXF73089.1\|5908_8875_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
AXF73090.1\|9343_10204_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AXF73091.1\|10386_10944_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
AXF73092.1\|11107_14113_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
12389:12400	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031107

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66038 : 119972

Macacine_betaherpesvirus(36.36%)

transposase,integrase,protease

attL 80699:80718|attR 133678:133697

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF72866.1\|66038_67010_+\|transposase	IS110-like element ISEc32 family transposase	Q75QL1	Wolbachia_phage	3.2e-25	31.7
AXF72867.1\|67270_67483_-	hypothetical protein	NA	NA	NA	NA
AXF72868.1\|67495_68071_-	hypothetical protein	NA	NA	NA	NA
AXF72869.1\|69289_70261_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	8.8e-169	96.6
AXF72870.1\|70260_71427_-	protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.6e-228	99.7
AXF72871.1\|73294_75037_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.7e-19	22.4
AXF72872.1\|75039_76581_-	lasso peptide isopeptide bond-forming cyclase	NA	NA	NA	NA
AXF72873.1\|76583_77210_-	lasso peptide biosynthesis B2 protein	NA	NA	NA	NA
AXF72874.1\|77549_77726_+	lasso peptide microcin J25	NA	NA	NA	NA
AXF72875.1\|78852_79065_-	hypothetical protein	NA	NA	NA	NA
AXF72876.1\|79793_80051_+	hypothetical protein	NA	NA	NA	NA
AXF72877.1\|80146_80593_-	hypothetical protein	A0A222YWI5	Escherichia_phage	1.8e-28	55.3
80699:80718	attL	NA	NA	NA	NA
AXF72878.1\|80712_81985_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.0e-176	99.0
AXF72879.1\|82861_83644_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.0e-50	93.0
AXF72880.1\|83644_83950_-	toxin CcdB	NA	NA	NA	NA
AXF72881.1\|83951_84170_-	antitoxin CcdA	NA	NA	NA	NA
AXF72985.1\|84171_84450_+	hypothetical protein	NA	NA	NA	NA
AXF72882.1\|84414_84600_-	hypothetical protein	NA	NA	NA	NA
AXF72883.1\|84725_85415_+	DNA-binding protein	NA	NA	NA	NA
AXF72986.1\|85446_86136_-	RES domain-containing protein	NA	NA	NA	NA
AXF72987.1\|86439_86577_+	toxin-antitoxin system, antitoxin component, AbrB family protein	NA	NA	NA	NA
AXF72884.1\|86554_86785_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AXF72885.1\|86781_87198_+	PIN domain-containing protein	NA	NA	NA	NA
AXF72886.1\|87359_89498_-	AAA family ATPase	NA	NA	NA	NA
AXF72887.1\|89884_90115_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AXF72888.1\|90111_90528_+	PIN domain-containing protein	NA	NA	NA	NA
AXF72889.1\|90602_92168_+	ATP-dependent endonuclease	NA	NA	NA	NA
AXF72890.1\|92152_93175_+	DNA helicase UvrD	NA	NA	NA	NA
AXF72891.1\|94217_94523_+	hypothetical protein	NA	NA	NA	NA
AXF72892.1\|94631_96833_-	TonB-dependent receptor	NA	NA	NA	NA
AXF72893.1\|96914_98192_-	L-lysine N6-monooxygenase	NA	NA	NA	NA
AXF72894.1\|98188_99931_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
AXF72895.1\|99930_100878_-	N-acetyltransferase	NA	NA	NA	NA
AXF72896.1\|100878_102666_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
AXF72897.1\|102738_103932_+	MFS transporter	NA	NA	NA	NA
AXF72898.1\|104311_104692_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-26	55.0
AXF72899.1\|104763_105036_-	hypothetical protein	NA	NA	NA	NA
AXF72900.1\|105934_106792_-	metal ABC transporter permease	NA	NA	NA	NA
AXF72901.1\|106788_107646_-	metal ABC transporter permease	NA	NA	NA	NA
AXF72902.1\|107642_108470_-	manganese/iron ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	3.6e-14	27.0
AXF72903.1\|108469_109384_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
AXF72904.1\|109506_109698_-	prephenate dehydratase	NA	NA	NA	NA
AXF72905.1\|111659_111956_+	hypothetical protein	NA	NA	NA	NA
AXF72906.1\|112364_113342_+	repFIB replication protein A	J9Q7H0	Salmonella_phage	4.6e-101	63.9
AXF72907.1\|113626_114367_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
AXF72908.1\|114487_114676_-	serine/threonine protein kinase	NA	NA	NA	NA
AXF72909.1\|115050_115953_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
AXF72910.1\|116021_117131_-	NAD(P)H-binding protein	NA	NA	NA	NA
AXF72911.1\|117189_117474_+	hypothetical protein	NA	NA	NA	NA
AXF72912.1\|117563_118517_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
AXF72913.1\|118620_119010_+	GlcNAc transferase	NA	NA	NA	NA
AXF72914.1\|119376_119640_-	hypothetical protein	NA	NA	NA	NA
AXF72915.1\|119789_119972_-\|transposase	transposase	NA	NA	NA	NA
133678:133697	attR	NA	NA	NA	NA

DBSCAN-SWA_2

132409 : 185620

Stx2-converting_phage(22.73%)

transposase,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF72922.1\|132409_133683_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.8e-175	98.7
AXF72923.1\|134344_134638_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
AXF72924.1\|135152_135335_-	hypothetical protein	NA	NA	NA	NA
AXF72988.1\|137320_137584_+	hypothetical protein	NA	NA	NA	NA
AXF72925.1\|137782_138898_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
AXF72926.1\|138911_142697_+	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	1.7e-45	30.1
AXF72927.1\|142800_144030_+	catecholate siderophore esterase IroD	NA	NA	NA	NA
AXF72928.1\|144114_145071_+	catecholate siderophore esterase IroE	NA	NA	NA	NA
AXF72929.1\|145115_147293_-	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	9.6e-06	31.8
AXF72930.1\|147580_147808_+	hypothetical protein	NA	NA	NA	NA
AXF72931.1\|148031_148217_-	phospho-2-dehydro-3-deoxyheptonate aldolase	NA	NA	NA	NA
AXF72932.1\|148137_149172_-	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	1.1e-73	42.6
AXF72933.1\|149189_149381_-	hypothetical protein	NA	NA	NA	NA
AXF72934.1\|149731_150040_-	hypothetical protein	NA	NA	NA	NA
AXF72935.1\|150138_150321_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXF72936.1\|150317_150515_-	toxin-antitoxin system protein	NA	NA	NA	NA
AXF72989.1\|151229_152471_+	colicin V secretion protein CvaA	NA	NA	NA	NA
AXF72937.1\|152445_154560_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	3.6e-34	26.5
AXF72938.1\|154729_155041_-	colicin V	NA	NA	NA	NA
AXF72939.1\|155136_155343_+	hypothetical protein	NA	NA	NA	NA
AXF72940.1\|156194_156464_+	hypothetical protein	NA	NA	NA	NA
AXF72941.1\|156460_157441_+	FAD-binding protein	A0A2H4J2Q2	uncultured_Caudovirales_phage	3.3e-06	41.5
AXF72990.1\|157516_157690_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.2e-21	100.0
AXF72942.1\|157693_159265_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
AXF72943.1\|159284_159632_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	1.5e-46	75.9
AXF72944.1\|159631_160279_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	2.4e-21	46.0
AXF72945.1\|160327_161673_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.5e-75	51.3
AXF72946.1\|161671_161941_+	hypothetical protein	NA	NA	NA	NA
AXF72947.1\|162025_162373_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
AXF72948.1\|164549_168683_-\|protease	hemoglobin-binding protease autotransporter Hbp	Q9LA54	Enterobacteria_phage	4.3e-297	41.6
AXF72949.1\|169323_169692_+\|transposase	transposase	Q716C1	Shigella_phage	1.9e-39	98.9
AXF72950.1\|170711_171924_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	5.5e-168	99.0
AXF72951.1\|172234_172600_+\|transposase	transposase	NA	NA	NA	NA
AXF72952.1\|173066_174077_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.1e-20	28.8
AXF72953.1\|174665_176243_-	PAS domain S-box protein	A0A1B0V854	Salmonella_phage	1.2e-95	99.4
AXF72954.1\|176552_177113_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
AXF72955.1\|177116_180083_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
AXF72956.1\|180059_180257_-	hypothetical protein	NA	NA	NA	NA
AXF72957.1\|180299_180890_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.2e-24	38.3
AXF72958.1\|181244_182243_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXF72959.1\|182242_183280_+	iron ABC transporter permease	NA	NA	NA	NA
AXF72960.1\|183279_184041_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	8.8e-15	30.2
AXF72961.1\|184052_185285_+	MFS transporter	NA	NA	NA	NA
AXF72962.1\|185362_185620_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP031108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 5040

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF72992.1\|716_938_-	hypothetical protein	G8C7S3	Escherichia_phage	1.2e-09	52.1
AXF72993.1\|930_1665_-	DUF551 domain-containing protein	A0A2I6TCG8	Escherichia_phage	2.1e-77	95.6
AXF72994.1\|1661_1952_-	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	4.3e-47	99.0
AXF72995.1\|1951_2371_-	DUF977 family protein	A0A2I6TCA7	Escherichia_phage	4.3e-72	99.3
AXF72996.1\|2370_2928_-	3'-5' exoribonuclease	A0A2I6TCA6	Escherichia_phage	1.6e-106	98.4
AXF72997.1\|2995_3181_+	hypothetical protein	NA	NA	NA	NA
AXF72998.1\|3177_3423_-	hypothetical protein	A0A2I6TCB2	Escherichia_phage	1.4e-43	100.0
AXF72999.1\|3430_4141_-	phage antitermination protein	A0A2I6TCB3	Escherichia_phage	8.8e-134	100.0
AXF73028.1\|4130_4352_-	hypothetical protein	A0A2I6TCB1	Escherichia_phage	2.1e-33	100.0
AXF73000.1\|4443_5040_+	XRE family transcriptional regulator	A0A2I6TCW0	Escherichia_phage	2.8e-109	100.0

DBSCAN-SWA_2

9470 : 27005

Escherichia_phage(95.65%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF73002.1\|9470_9797_+	hypothetical protein	O64345	Escherichia_phage	1.6e-34	63.6
AXF73003.1\|9799_10195_+	hypothetical protein	A0A2I6TCB8	Escherichia_phage	6.5e-70	97.7
AXF73004.1\|10885_11050_+	host cell division inhibitor Icd-like protein	A0A2I6TCE0	Escherichia_phage	1.9e-20	98.1
AXF73005.1\|11046_11280_+	hypothetical protein	A0A2I6TCC2	Escherichia_phage	7.8e-31	92.2
AXF73006.1\|11276_11441_+	hypothetical protein	A0A2I6TCD0	Escherichia_phage	7.4e-20	94.1
AXF73007.1\|11486_13406_-	protelomerase	A0A2I6TCW8	Escherichia_phage	0.0e+00	98.7
AXF73008.1\|13788_15708_+	protelomerase	A0A2I6TCW8	Escherichia_phage	0.0e+00	98.7
AXF73009.1\|15753_15918_-	hypothetical protein	A0A2I6TCD0	Escherichia_phage	7.4e-20	94.1
AXF73010.1\|15914_16148_-	hypothetical protein	A0A2I6TCC2	Escherichia_phage	7.8e-31	92.2
AXF73011.1\|16144_16309_-	host cell division inhibitor Icd-like protein	A0A2I6TCE0	Escherichia_phage	1.9e-20	98.1
AXF73012.1\|16685_16973_-	hypothetical protein	NA	NA	NA	NA
AXF73013.1\|17000_17396_-	hypothetical protein	A0A2I6TCB8	Escherichia_phage	6.5e-70	97.7
AXF73014.1\|17398_17725_-	hypothetical protein	O64345	Escherichia_phage	1.6e-34	63.6
AXF73015.1\|17729_17921_-	hypothetical protein	NA	NA	NA	NA
AXF73016.1\|17913_21909_-	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	95.1
AXF73017.1\|22154_22751_-	XRE family transcriptional regulator	A0A2I6TCW0	Escherichia_phage	2.8e-109	100.0
AXF73018.1\|22842_23064_+	hypothetical protein	A0A2I6TCB1	Escherichia_phage	2.1e-33	100.0
AXF73019.1\|23053_23764_+	phage antitermination protein	A0A2I6TCB3	Escherichia_phage	8.8e-134	100.0
AXF73020.1\|23771_24017_+	hypothetical protein	A0A2I6TCB2	Escherichia_phage	1.4e-43	100.0
AXF73021.1\|24013_24199_-	hypothetical protein	NA	NA	NA	NA
AXF73022.1\|24266_24824_+	3'-5' exoribonuclease	A0A2I6TCA6	Escherichia_phage	1.6e-106	98.4
AXF73023.1\|24823_25243_+	DUF977 family protein	A0A2I6TCA7	Escherichia_phage	4.3e-72	99.3
AXF73024.1\|25242_25533_+	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	4.3e-47	99.0
AXF73025.1\|25529_26264_+	DUF551 domain-containing protein	A0A2I6TCG8	Escherichia_phage	2.1e-77	95.6
AXF73026.1\|26256_26478_+	hypothetical protein	G8C7S3	Escherichia_phage	1.2e-09	52.1
AXF73029.1\|26477_27005_+	hypothetical protein	A0A0F6TJ66	Escherichia_coli_O157_typing_phage	1.5e-37	95.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031105

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031110

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP031107

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. CP031108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection