CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP021932	Lactobacillus plantarum strain TMW 1.1478 chromosome, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh	0	0	9	0
CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

364742 : 408359

Bacillus_phage(33.33%)

transposase,protease,bacteriocin,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH03269.1\|364742_366005_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
AXH03270.1\|366028_366172_-	hypothetical protein	NA	NA	NA	NA
AXH03271.1\|366196_366865_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AXH03272.1\|366861_367035_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AXH03273.1\|367065_367233_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AXH03274.1\|368094_368295_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AXH03275.1\|368422_368590_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AXH03276.1\|368707_369907_+	pirin	NA	NA	NA	NA
AXH03277.1\|369937_370684_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXH03278.1\|371037_371226_+	pirin	NA	NA	NA	NA
AXH03279.1\|371561_371708_+\|bacteriocin	bacteriocin plantaricin-A	NA	NA	NA	NA
AXH03280.1\|371898_373227_+	histidine kinase	NA	NA	NA	NA
AXH03281.1\|373227_373971_+	DNA-binding response regulator	NA	NA	NA	NA
AXH03282.1\|374089_374833_+	DNA-binding response regulator	NA	NA	NA	NA
AXH03283.1\|375126_375900_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXH03284.1\|375998_376157_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AXH03285.1\|376181_376352_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AXH03286.1\|376618_378769_+	peptide ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.4e-44	27.7
AXH03287.1\|378784_380161_+	HlyD family secretion protein	NA	NA	NA	NA
AXH03288.1\|381007_381676_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXH03289.1\|381762_382443_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXH03290.1\|382536_383223_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXH03291.1\|383360_383564_+	hypothetical protein	NA	NA	NA	NA
AXH03292.1\|383658_385968_-	ATP-dependent DNA helicase	NA	NA	NA	NA
AXH03293.1\|386226_387003_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA
AXH03294.1\|387441_388458_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AXH03295.1\|388865_389576_+	GntR family transcriptional regulator	NA	NA	NA	NA
AXH03296.1\|389648_391010_+	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA
AXH03297.1\|391016_391205_+	hypothetical protein	NA	NA	NA	NA
AXH03298.1\|391194_391617_+	hypothetical protein	NA	NA	NA	NA
AXH05961.1\|391839_393195_+	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA
AXH03299.1\|393212_394649_+	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	9.7e-31	25.5
AXH03300.1\|394769_395666_+	ROK family protein	NA	NA	NA	NA
AXH03301.1\|395815_396562_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AXH03302.1\|396674_397688_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
AXH03303.1\|398141_399275_+	hypothetical protein	NA	NA	NA	NA
AXH03304.1\|399279_400074_+	hypothetical protein	NA	NA	NA	NA
AXH03305.1\|400242_401160_+	exopolyphosphatase	NA	NA	NA	NA
AXH03306.1\|401205_402480_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
AXH03307.1\|402472_403432_+	IpaB/EvcA family protein	NA	NA	NA	NA
AXH03308.1\|403453_404158_+	NAD-dependent protein deacetylase	NA	NA	NA	NA
AXH03309.1\|404157_405000_+	DUF72 domain-containing protein	NA	NA	NA	NA
AXH03310.1\|405596_405986_+	NUDIX domain-containing protein	NA	NA	NA	NA
AXH03311.1\|406307_408359_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.7e-90	35.8

DBSCAN-SWA_2

522991 : 562220

Lactobacillus_phage(95.65%)

lysis,terminase,integrase,capsid,tail,portal

attL 512530:512544|attR 542946:542960

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
512530:512544	attL	NA	NA	NA	NA
AXH03403.1\|522991_524149_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	2.5e-218	98.7
AXH03404.1\|524436_525345_-	DNA-binding protein	NA	NA	NA	NA
AXH03405.1\|525491_526445_-	hypothetical protein	NA	NA	NA	NA
AXH03406.1\|526620_527244_-	hypothetical protein	NA	NA	NA	NA
AXH03407.1\|527336_527768_-	hypothetical protein	A0A2P0ZLA0	Lactobacillus_phage	7.6e-80	100.0
AXH03408.1\|527777_528155_-	transcriptional regulator	A0A2P0ZLA1	Lactobacillus_phage	1.5e-44	68.5
AXH03409.1\|528467_528677_+	transcriptional regulator	A0A2P0ZL97	Lactobacillus_phage	7.0e-31	100.0
AXH03410.1\|528680_528884_+	hypothetical protein	A0A2P0ZLA4	Lactobacillus_phage	4.0e-31	100.0
AXH03411.1\|528883_529156_+	hypothetical protein	A0A2P0ZLA9	Lactobacillus_phage	1.2e-43	100.0
AXH03412.1\|529294_529744_+	hypothetical protein	A0A2P0ZLA2	Lactobacillus_phage	2.1e-77	98.7
AXH03413.1\|529899_530085_+	hypothetical protein	A0A2P0ZLA3	Lactobacillus_phage	1.7e-28	93.4
AXH03414.1\|530228_530333_+	hypothetical protein	A0A2P0ZLA8	Lactobacillus_phage	3.0e-11	94.1
AXH03415.1\|530329_530809_+	RNA helicase	A0A2P0ZLB3	Lactobacillus_phage	1.1e-79	95.0
AXH03416.1\|530808_532185_+	DEAD/DEAH box helicase	A0A2P0ZLA5	Lactobacillus_phage	3.9e-231	95.1
AXH03417.1\|532181_532403_+	transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	5.7e-07	40.3
AXH03418.1\|532380_533097_+	NTP-binding protein	A0A2P0ZLB2	Lactobacillus_phage	7.1e-115	99.5
AXH03419.1\|533099_533723_+	hypothetical protein	A0A2P0ZLB9	Lactobacillus_phage	3.5e-102	97.9
AXH03420.1\|533793_534588_+	DNA primase	A0A2P0ZLB0	Lactobacillus_phage	2.8e-144	96.6
AXH03421.1\|534584_535859_+	helicase	A0A2P0ZLC4	Lactobacillus_phage	6.0e-242	98.6
AXH03422.1\|536116_536449_+	VRR-NUC domain-containing protein	A0A2P0ZLB6	Lactobacillus_phage	1.1e-57	95.5
AXH03423.1\|536930_537287_+	hypothetical protein	A0A1I9KKG9	Lactobacillus_phage	5.2e-10	34.1
AXH03424.1\|537417_537729_+	hypothetical protein	A0A2P0ZLD0	Lactobacillus_phage	1.5e-50	98.1
AXH03425.1\|537740_538172_+	hypothetical protein	A0A2P0ZLC0	Lactobacillus_phage	4.6e-69	96.3
AXH03426.1\|538506_539376_+	DNA methyltransferase	A0A1S5PRR3	Streptococcus_phage	1.1e-80	51.4
AXH03427.1\|539391_540663_+	hypothetical protein	NA	NA	NA	NA
AXH03428.1\|540829_541045_+	hypothetical protein	A0A2P0ZLC2	Lactobacillus_phage	5.1e-29	88.7
AXH03429.1\|541028_541367_+	HNH endonuclease	A0A2P0ZLC6	Lactobacillus_phage	6.8e-60	93.8
AXH03430.1\|541366_541609_+	hypothetical protein	A0A2P0ZLD3	Lactobacillus_phage	1.7e-33	86.2
AXH03431.1\|541626_541869_+	hypothetical protein	A0A2P0ZLD2	Lactobacillus_phage	6.8e-38	95.0
AXH03432.1\|542260_543940_+\|terminase	terminase	A0A2P0ZLE5	Lactobacillus_phage	7.4e-232	70.0
542946:542960	attR	NA	NA	NA	NA
AXH03433.1\|543958_545101_+\|portal	phage portal protein	A0A2P0ZLC9	Lactobacillus_phage	9.6e-207	94.5
AXH03434.1\|545087_545813_+	peptidase	A0A2P0ZLE3	Lactobacillus_phage	1.1e-107	82.4
AXH03435.1\|545833_547012_+\|capsid	phage major capsid protein	A0A2P0ZLD6	Lactobacillus_phage	8.6e-219	99.5
AXH03436.1\|547150_547456_+	hypothetical protein	A0A2P0ZLD5	Lactobacillus_phage	8.3e-41	85.1
AXH03437.1\|547436_547826_+	hypothetical protein	A0A2P0ZLD1	Lactobacillus_phage	7.1e-69	97.7
AXH03438.1\|547822_548230_+	hypothetical protein	A0A2P0ZLD7	Lactobacillus_phage	2.0e-66	94.1
AXH03439.1\|548226_548649_+	hypothetical protein	A0A2P0ZLE4	Lactobacillus_phage	9.7e-72	97.9
AXH03440.1\|548663_549269_+\|tail	phage tail protein	A0A2P0ZLF5	Lactobacillus_phage	3.7e-109	99.5
AXH03441.1\|549186_549516_+	hypothetical protein	A0A2P0ZLD8	Lactobacillus_phage	3.9e-36	100.0
AXH03442.1\|549587_549902_+	hypothetical protein	A0A2P0ZLF3	Lactobacillus_phage	7.2e-48	89.4
AXH03443.1\|549925_550147_+\|tail	phage tail tape measure protein	A0A2P0ZLD9	Lactobacillus_phage	1.1e-31	97.3
AXH03444.1\|550165_554710_+\|tail	phage tail tape measure protein	A0A2P0ZLF1	Lactobacillus_phage	0.0e+00	97.8
AXH03445.1\|554713_555535_+\|tail	phage tail protein	A0A2P0ZLE2	Lactobacillus_phage	5.7e-153	99.6
AXH03446.1\|555554_559463_+	hypothetical protein	A0A2P0ZLE1	Lactobacillus_phage	0.0e+00	73.1
AXH05964.1\|559488_559971_+	hypothetical protein	A0A2P0ZLE0	Lactobacillus_phage	1.4e-79	98.8
AXH03447.1\|559972_560407_+	hypothetical protein	A0A2P0ZLE9	Lactobacillus_phage	1.2e-72	100.0
AXH03448.1\|560423_560807_+	hypothetical protein	A0A2P0ZLF7	Lactobacillus_phage	3.5e-68	98.4
AXH03449.1\|560809_561004_+	hypothetical protein	A0A2P0ZLG4	Lactobacillus_phage	2.6e-24	98.4
AXH03450.1\|561003_561288_+\|lysis	lysis protein	A0A2P0ZLE8	Lactobacillus_phage	3.1e-42	98.9
AXH03451.1\|561287_562220_+	lysin	A0A2P0ZLG2	Lactobacillus_phage	5.1e-174	94.5

DBSCAN-SWA_3

611910 : 620534

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH03499.1\|611910_613608_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.9e-55	37.0
AXH03500.1\|613629_613938_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
AXH03501.1\|613953_614553_+	recombination protein RecR	NA	NA	NA	NA
AXH03502.1\|614567_614819_+	hypothetical protein	NA	NA	NA	NA
AXH03503.1\|615216_615882_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-53	52.7
AXH03504.1\|615878_616208_+	hypothetical protein	NA	NA	NA	NA
AXH03505.1\|616224_617244_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-32	33.5
AXH03506.1\|617268_617616_+	initiation-control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
AXH03507.1\|617714_618611_+	rRNA (cytidine-2'-O-)-methyltransferase	M1PLC5	Streptococcus_phage	9.9e-82	55.7
AXH03508.1\|618614_619400_+	acyl-ACP thioesterase	NA	NA	NA	NA
AXH03509.1\|619538_620534_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	5.9e-51	38.2

DBSCAN-SWA_4

1056442 : 1063769

Escherichia_phage(50.0%)

integrase

attL 1060322:1060335|attR 1068940:1068953

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH03890.1\|1056442_1057435_+	methanolan biosynthesis protein EpsI	A0A0N7KVX0	Yellowstone_lake_phycodnavirus	2.7e-08	39.8
AXH03891.1\|1057434_1058280_+	glycosyl transferase	NA	NA	NA	NA
AXH03892.1\|1058293_1059715_+	hypothetical protein	NA	NA	NA	NA
AXH03893.1\|1059754_1060624_+	glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	9.2e-101	60.8
1060322:1060335	attL	NA	NA	NA	NA
AXH03894.1\|1060627_1061209_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-38	45.1
AXH03895.1\|1061218_1062247_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.1e-68	42.4
AXH03896.1\|1062316_1063159_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	2.5e-34	37.2
AXH03897.1\|1063190_1063769_-\|integrase	integrase	D2XR58	Bacillus_phage	9.3e-33	42.5
1068940:1068953	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1068372 : 1074555

Escherichia_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH03903.1\|1068372_1069242_+	glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	1.3e-99	60.5
AXH03904.1\|1069245_1069827_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-38	45.1
AXH03905.1\|1069836_1070865_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	4.9e-69	42.1
AXH03906.1\|1070935_1071802_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.3e-33	36.4
AXH03907.1\|1071815_1072031_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
AXH03908.1\|1072087_1073035_+	glycosyl transferase	A0A2L1GG98	Phaseolus_vulgaris_alphaendornavirus	1.1e-09	33.3
AXH03909.1\|1073037_1073733_+	acetyltransferase	NA	NA	NA	NA
AXH03910.1\|1073751_1074555_+\|holin	lipopolysaccharide cholinephosphotransferase	A0A1V0SAS8	Catovirus	1.2e-06	40.7

DBSCAN-SWA_6

1504340 : 1553497

Lactobacillus_phage(38.46%)

terminase,integrase,head,transposase,holin,capsid,tail,portal

attL 1504303:1504317|attR 1551469:1551483

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1504303:1504317	attL	NA	NA	NA	NA
AXH04279.1\|1504340_1505561_-\|integrase	site-specific integrase	A0A0P0I3D2	Lactobacillus_phage	2.7e-82	41.1
AXH04280.1\|1505853_1506135_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AXH04281.1\|1506203_1506392_-	hypothetical protein	NA	NA	NA	NA
AXH04282.1\|1506538_1507216_-	phage immunity protein	V9QKI2	Oenococcus_phage	8.4e-09	44.3
AXH04283.1\|1507323_1507578_-	hypothetical protein	NA	NA	NA	NA
AXH04284.1\|1507587_1508379_-	hypothetical protein	NA	NA	NA	NA
AXH04285.1\|1508401_1508815_-	ImmA/IrrE family metallo-endopeptidase	A0A0M4RD70	Bacillus_phage	3.4e-05	31.3
AXH04286.1\|1508826_1509189_-	transcriptional regulator	A0A0U4KKM4	Exiguobacterium_phage	2.6e-09	32.0
AXH04287.1\|1509361_1509592_+	transcriptional regulator	NA	NA	NA	NA
AXH04288.1\|1510185_1510797_-	hypothetical protein	NA	NA	NA	NA
AXH04289.1\|1510793_1511030_-	transcriptional regulator	NA	NA	NA	NA
AXH04290.1\|1511164_1511371_+	transcriptional regulator	A0A142F1D1	Bacillus_phage	8.5e-05	51.0
AXH04291.1\|1511370_1511667_+	hypothetical protein	NA	NA	NA	NA
AXH04292.1\|1511691_1511874_+	hypothetical protein	NA	NA	NA	NA
AXH04293.1\|1511938_1512487_+	hypothetical protein	NA	NA	NA	NA
AXH04294.1\|1512500_1512764_+	hypothetical protein	NA	NA	NA	NA
AXH04295.1\|1513172_1513286_+	hypothetical protein	NA	NA	NA	NA
AXH04296.1\|1513307_1513838_+	hypothetical protein	E9LUU0	Lactobacillus_phage	3.3e-53	58.6
AXH04297.1\|1513849_1514815_+	hypothetical protein	A6M982	Geobacillus_virus	5.0e-63	53.6
AXH04298.1\|1514858_1515734_+	hypothetical protein	NA	NA	NA	NA
AXH04299.1\|1515714_1516557_+	DNA replication protein	O03914	Lactobacillus_phage	1.8e-157	98.9
AXH04300.1\|1516689_1516992_+	hypothetical protein	E9LUN7	Lactobacillus_phage	6.3e-41	81.0
AXH04301.1\|1517358_1519122_-	hypothetical protein	NA	NA	NA	NA
AXH04302.1\|1519502_1519931_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	1.2e-58	76.6
AXH04303.1\|1520286_1520490_+	hypothetical protein	NA	NA	NA	NA
AXH04304.1\|1520500_1520935_+	MarR family transcriptional regulator	NA	NA	NA	NA
AXH04305.1\|1521135_1521600_+	hypothetical protein	Q597W0	Lactobacillus_virus	6.3e-32	55.6
AXH04306.1\|1521583_1522870_+\|terminase	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	1.1e-115	50.6
AXH04307.1\|1522859_1524518_+\|portal	phage portal protein	D2IZF6	Enterococcus_phage	4.8e-66	32.6
AXH04308.1\|1524517_1525462_+\|head	phage head morphogenesis protein	NA	NA	NA	NA
AXH04309.1\|1525570_1526218_+\|capsid	phage capsid protein	NA	NA	NA	NA
AXH04310.1\|1526231_1527302_+\|capsid	phage capsid protein	A0A0S0N2Q7	Pseudomonas_phage	7.7e-33	30.3
AXH04311.1\|1527316_1527682_+	hypothetical protein	H9A0V3	Staphylococcus_phage	8.8e-05	35.6
AXH04312.1\|1527686_1528010_+	hypothetical protein	NA	NA	NA	NA
AXH04313.1\|1527999_1528554_+\|tail	phage tail protein	NA	NA	NA	NA
AXH04314.1\|1528554_1528941_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AXH04315.1\|1528952_1529540_+\|tail	phage tail protein	NA	NA	NA	NA
AXH04316.1\|1529557_1530070_+	hypothetical protein	NA	NA	NA	NA
AXH04317.1\|1530138_1530375_+	hypothetical protein	NA	NA	NA	NA
AXH04318.1\|1530374_1534379_+	tape measure protein	E9LUR1	Lactobacillus_phage	5.2e-82	44.3
AXH04319.1\|1534372_1535110_+\|tail	phage tail protein	A0A1S5SA63	Streptococcus_phage	4.1e-41	36.6
AXH04320.1\|1535109_1536984_+	endolysin	A0A1X9IGI5	Lactococcus_phage	3.0e-48	32.9
AXH04321.1\|1536988_1537981_+	SGNH/GDSL hydrolase family protein	Q8LTH0	Staphylococcus_virus	1.8e-36	40.6
AXH04322.1\|1537995_1538610_+\|head	phage head protein	A0A1J0MFQ3	Staphylococcus_phage	7.3e-44	47.8
AXH04323.1\|1538615_1539356_+	hypothetical protein	NA	NA	NA	NA
AXH04324.1\|1539356_1539677_+	hypothetical protein	NA	NA	NA	NA
AXH04325.1\|1539676_1539853_+	XkdX family protein	NA	NA	NA	NA
AXH04326.1\|1539830_1540988_+	lysin	A0A2K9V5A4	Lactobacillus_phage	8.6e-46	67.2
AXH04327.1\|1540987_1541251_+\|holin	holin	E9LUR9	Lactobacillus_phage	8.5e-26	73.6
AXH04328.1\|1541264_1541627_+\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	2.4e-18	67.1
AXH04329.1\|1541960_1542167_-	hypothetical protein	NA	NA	NA	NA
AXH04330.1\|1542418_1542643_-	hypothetical protein	NA	NA	NA	NA
AXH04331.1\|1542838_1543444_+	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	1.6e-14	28.7
AXH04332.1\|1544080_1546201_+	hypothetical protein	NA	NA	NA	NA
AXH04333.1\|1546272_1546809_-	hypothetical protein	NA	NA	NA	NA
AXH04334.1\|1548118_1548715_-	hypothetical protein	A0A0P0I3D2	Lactobacillus_phage	1.1e-31	38.5
AXH04335.1\|1548739_1549165_-	hypothetical protein	NA	NA	NA	NA
AXH04336.1\|1549530_1549797_+	hypothetical protein	NA	NA	NA	NA
AXH05983.1\|1549881_1550391_-	hypothetical protein	NA	NA	NA	NA
AXH04337.1\|1551835_1553497_+\|transposase	DDE transposase	A0ZS58	Staphylococcus_virus	4.6e-93	41.5
1551469:1551483	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1817800 : 1918511

105

Lactobacillus_phage(68.63%)

terminase,tRNA,protease,integrase,head,transposase,holin,capsid,tail,portal

attL 1860083:1860100|attR 1925375:1925392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH04581.1\|1817800_1819507_+\|transposase	DDE transposase	A0ZS58	Staphylococcus_virus	2.1e-93	41.5
AXH04582.1\|1819463_1821299_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	1.5e-23	26.1
AXH04583.1\|1821462_1822740_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
AXH04584.1\|1822736_1822979_-	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
AXH04585.1\|1823002_1824217_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	1.9e-27	30.5
AXH04586.1\|1824213_1825740_-	D-alanine--poly(phosphoribitol) ligase	A0A2K9KZV5	Tupanvirus	5.3e-43	27.8
AXH04587.1\|1825782_1825932_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
AXH04588.1\|1825963_1827139_-	peptidase S12	NA	NA	NA	NA
AXH04589.1\|1827572_1828715_-	molecular chaperone DnaJ	A0A2K9L588	Tupanvirus	4.3e-21	32.0
AXH04590.1\|1828816_1830685_-	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	7.7e-137	47.2
AXH04591.1\|1830728_1831328_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXH04592.1\|1831348_1832392_-	HrcA family transcriptional regulator	NA	NA	NA	NA
AXH04593.1\|1832783_1833494_-	acetolactate decarboxylase	NA	NA	NA	NA
AXH04594.1\|1833494_1834496_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA
AXH04595.1\|1834508_1835432_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
AXH04596.1\|1835909_1836431_-	shikimate kinase	NA	NA	NA	NA
AXH04597.1\|1836433_1837531_-	prephenate dehydrogenase	NA	NA	NA	NA
AXH04598.1\|1837533_1838832_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AXH04599.1\|1838845_1839373_-	amino acid biosynthesis protein	NA	NA	NA	NA
AXH04600.1\|1839381_1840551_-	chorismate synthase	NA	NA	NA	NA
AXH04601.1\|1840543_1841998_-	MFS transporter	NA	NA	NA	NA
AXH04602.1\|1842646_1843000_-	ribosome-binding factor A	NA	NA	NA	NA
AXH04603.1\|1843022_1845599_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	9.6e-21	23.3
AXH04604.1\|1845613_1845919_-	hypothetical protein	NA	NA	NA	NA
AXH04605.1\|1845908_1846208_-	DNA-binding protein	NA	NA	NA	NA
AXH04606.1\|1846252_1847470_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
AXH04607.1\|1847490_1847967_-	ribosome maturation factor RimP	NA	NA	NA	NA
AXH04608.1\|1848262_1852576_-	DNA polymerase III subunit alpha	A0A1X9SH08	Bradyrhizobium_phage	1.0e-14	34.0
AXH04609.1\|1853069_1854779_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
AXH04610.1\|1854818_1856096_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
AXH04611.1\|1856133_1856919_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AXH04612.1\|1856934_1857714_-	ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)	R9W0U9	Flavobacterium_phage	1.1e-23	43.1
AXH04613.1\|1857833_1858397_-	ribosome-recycling factor	NA	NA	NA	NA
AXH04614.1\|1858398_1859121_-	UMP kinase	NA	NA	NA	NA
AXH04615.1\|1859320_1860199_-	elongation factor Ts	NA	NA	NA	NA
1860083:1860100	attL	NA	NA	NA	NA
AXH04616.1\|1860301_1861105_-	30S ribosomal protein S2	NA	NA	NA	NA
AXH04617.1\|1861329_1862052_+	HAD family hydrolase	NA	NA	NA	NA
AXH04618.1\|1862340_1863339_-	lactate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	2.3e-47	34.9
AXH04619.1\|1863423_1863729_-	hypothetical protein	NA	NA	NA	NA
AXH04620.1\|1863712_1864471_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AXH04621.1\|1864582_1865218_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AXH04622.1\|1865274_1865511_-	hypothetical protein	NA	NA	NA	NA
AXH04623.1\|1865608_1865848_-	DUF896 family protein	NA	NA	NA	NA
AXH04624.1\|1865999_1866632_+	LexA repressor	A0A1B2APZ1	Phage_Wrath	2.3e-16	56.2
AXH04625.1\|1867187_1867817_+	hypothetical protein	NA	NA	NA	NA
AXH04626.1\|1867866_1869036_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
AXH04627.1\|1869071_1869464_-	hypothetical protein	NA	NA	NA	NA
AXH04628.1\|1869627_1870020_+	hypothetical protein	NA	NA	NA	NA
AXH04629.1\|1870465_1871407_+	glycosyltransferase	V9QJB1	Oenococcus_phage	2.4e-78	49.0
AXH04630.1\|1872112_1872685_-\|transposase	transposase	NA	NA	NA	NA
AXH04631.1\|1872836_1874021_-	LytR family transcriptional regulator	NA	NA	NA	NA
AXH04632.1\|1874001_1874793_-	taurine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-30	36.8
AXH04633.1\|1874811_1876554_-	nitrate ABC transporter permease	NA	NA	NA	NA
AXH04634.1\|1877032_1878244_-	rod shape-determining protein RodA	NA	NA	NA	NA
AXH04635.1\|1879483_1880014_-\|holin	holin	E9LUS0	Lactobacillus_phage	6.3e-36	98.8
AXH04636.1\|1880026_1880290_-\|holin	holin	E9LUR9	Lactobacillus_phage	2.0e-38	100.0
AXH04637.1\|1880289_1881462_-	endolysin	E9LUR8	Lactobacillus_phage	1.2e-199	89.5
AXH04638.1\|1881473_1881833_-	hypothetical protein	A0A2P0ZLF6	Lactobacillus_phage	5.9e-46	80.7
AXH04639.1\|1881981_1882233_-	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	2.4e-30	98.6
AXH04640.1\|1882225_1884772_-\|tail	phage tail protein	A0A2K9VDD0	Lactobacillus_phage	3.0e-248	80.6
AXH04641.1\|1884788_1887203_-	hypothetical protein	A0A2P0ZLF8	Lactobacillus_phage	0.0e+00	91.3
AXH04642.1\|1887271_1889044_-\|tail	phage tail protein	A0A2P0ZLH2	Lactobacillus_phage	7.9e-309	91.9
AXH04643.1\|1889118_1894149_-	peptidase M23	A0A2P0ZLG0	Lactobacillus_phage	0.0e+00	53.1
AXH04644.1\|1894180_1894372_-	hypothetical protein	NA	NA	NA	NA
AXH04645.1\|1894410_1894785_-	hypothetical protein	A0A2P0ZLH4	Lactobacillus_phage	3.2e-58	96.0
AXH04646.1\|1894861_1895515_-\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	1.5e-111	94.0
AXH04647.1\|1895530_1895911_-\|tail	phage tail protein	A0A2P0ZLF4	Lactobacillus_phage	4.5e-60	92.1
AXH04648.1\|1895910_1896318_-	hypothetical protein	A0A2P0ZLE6	Lactobacillus_phage	2.9e-65	93.8
AXH04649.1\|1896320_1896668_-\|head,tail	head-tail adaptor protein	A0A2P0ZLF0	Lactobacillus_phage	2.0e-43	73.0
AXH04650.1\|1896657_1896990_-	DNA packaging protein	E9LUQ4	Lactobacillus_phage	3.4e-48	91.7
AXH04651.1\|1897062_1898295_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	1.3e-209	92.4
AXH04652.1\|1898294_1899050_-	peptidase	E9LUQ2	Lactobacillus_phage	1.5e-123	93.2
AXH04653.1\|1899027_1900221_-\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	1.3e-222	98.0
AXH04654.1\|1900223_1900418_-	hypothetical protein	E9LUQ0	Lactobacillus_phage	7.4e-27	98.4
AXH04655.1\|1900407_1902306_-\|terminase	terminase	E9LUP9	Lactobacillus_phage	0.0e+00	92.6
AXH04656.1\|1902315_1902771_-\|terminase	terminase	E9LUP8	Lactobacillus_phage	3.0e-79	96.7
AXH04657.1\|1902960_1903212_-	hypothetical protein	NA	NA	NA	NA
AXH04658.1\|1903229_1903499_-	hypothetical protein	NA	NA	NA	NA
AXH04659.1\|1903504_1904017_-	HNH endonuclease	E9LUP7	Lactobacillus_phage	4.0e-80	91.0
AXH04660.1\|1904315_1905128_-	hypothetical protein	NA	NA	NA	NA
AXH04661.1\|1905797_1906226_-	transcriptional regulator	E9LUP5	Lactobacillus_phage	2.9e-63	82.4
AXH04662.1\|1906500_1906809_-	hypothetical protein	E9LUN7	Lactobacillus_phage	3.2e-48	94.1
AXH04663.1\|1906944_1907730_-	DNA replication protein	E9LUN6	Lactobacillus_phage	2.7e-144	98.1
AXH04664.1\|1907729_1908527_-	replication protein	Q9AZA0	Lactobacillus_prophage	4.2e-52	69.0
AXH04665.1\|1908628_1908886_-	hypothetical protein	NA	NA	NA	NA
AXH04666.1\|1909341_1909542_-	hypothetical protein	E9LUT7	Lactobacillus_phage	1.0e-26	89.4
AXH04667.1\|1909544_1909793_-	tagatose-bisphosphate aldolase	E9LUT6	Lactobacillus_phage	2.3e-28	75.0
AXH04668.1\|1909805_1910009_-	DNA-binding protein	NA	NA	NA	NA
AXH04669.1\|1910174_1910465_+	hypothetical protein	NA	NA	NA	NA
AXH04670.1\|1910550_1910814_+	SinR family protein	A0A0M3LS55	Mannheimia_phage	2.7e-11	42.4
AXH04671.1\|1911058_1911319_-	hypothetical protein	NA	NA	NA	NA
AXH04672.1\|1911376_1911733_+	hypothetical protein	NA	NA	NA	NA
AXH04673.1\|1911729_1911933_-	hypothetical protein	NA	NA	NA	NA
AXH04674.1\|1911943_1912696_-	phage repressor protein/antirepressor Ant	E9LUT0	Lactobacillus_phage	2.2e-58	96.5
AXH04675.1\|1912708_1912924_-	hypothetical protein	NA	NA	NA	NA
AXH04676.1\|1913180_1913507_+	transcriptional regulator	A0A1B0Y2R0	Lactobacillus_phage	6.9e-17	44.1
AXH05990.1\|1913537_1913927_+	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	4.6e-36	54.3
AXH04677.1\|1913989_1914868_+	hypothetical protein	A0A2H4J549	uncultured_Caudovirales_phage	3.0e-06	34.8
AXH04678.1\|1914882_1915083_+	hypothetical protein	E9LUS6	Lactobacillus_phage	4.2e-25	97.0
AXH04679.1\|1915403_1915634_+	hypothetical protein	NA	NA	NA	NA
AXH04680.1\|1915803_1915992_+	hypothetical protein	E9LUS5	Lactobacillus_phage	8.2e-23	91.9
AXH04681.1\|1916122_1916299_+	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	7.2e-21	86.2
AXH04682.1\|1916424_1916682_+	hypothetical protein	A0A2P0ZL96	Lactobacillus_phage	1.0e-31	76.2
AXH04683.1\|1916865_1917180_+	hypothetical protein	NA	NA	NA	NA
AXH04684.1\|1917347_1918511_+\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	1.0e-62	37.1
1925375:1925392	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2214343 : 2257043

Lactobacillus_phage(65.62%)

terminase,integrase,holin,capsid,tail

attL 2213464:2213480|attR 2257268:2257284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2213464:2213480	attL	NA	NA	NA	NA
AXH04953.1\|2214343_2214556_-	hypothetical protein	O03950	Lactobacillus_phage	6.0e-14	79.7
AXH04954.1\|2215234_2215612_-\|holin	holin	A0A2P0ZLG6	Lactobacillus_phage	4.5e-12	59.6
AXH04955.1\|2215598_2215895_-	hypothetical protein	A0A1I9KK55	Lactobacillus_phage	1.2e-39	77.6
AXH05998.1\|2215895_2217056_-	lysin	O03950	Lactobacillus_phage	7.8e-39	35.9
AXH04956.1\|2217063_2218554_-	hypothetical protein	NA	NA	NA	NA
AXH04957.1\|2218567_2219389_-	collagen-like protein	A0A2K9VCB5	Lactobacillus_phage	3.1e-05	31.7
AXH04958.1\|2219403_2220444_-	hypothetical protein	E9LUJ9	Lactobacillus_phage	8.9e-26	34.4
AXH04959.1\|2220427_2220838_-	hypothetical protein	NA	NA	NA	NA
AXH04960.1\|2220834_2221056_-	hypothetical protein	NA	NA	NA	NA
AXH04961.1\|2221048_2222176_-	hypothetical protein	O03938	Lactobacillus_phage	4.7e-73	42.6
AXH04962.1\|2222187_2223006_-	hypothetical protein	NA	NA	NA	NA
AXH04963.1\|2223006_2228655_-\|tail	phage tail tape measure protein	Q5ULL6	Lactobacillus_virus	3.6e-36	70.0
AXH04964.1\|2228670_2229312_-	hypothetical protein	O03936	Lactobacillus_phage	9.7e-07	26.9
AXH04965.1\|2229308_2229827_-	hypothetical protein	NA	NA	NA	NA
AXH04966.1\|2229945_2230563_-	hypothetical protein	A0A2I7QIP9	Bacillus_phage	1.4e-05	31.8
AXH04967.1\|2230580_2231006_-	hypothetical protein	NA	NA	NA	NA
AXH04968.1\|2231005_2231407_-	hypothetical protein	NA	NA	NA	NA
AXH04969.1\|2231403_2231793_-	hypothetical protein	NA	NA	NA	NA
AXH04970.1\|2231793_2232198_-	hypothetical protein	A5GYM1	Lactococcus_phage	2.6e-05	27.5
AXH04971.1\|2232557_2233505_-\|capsid	major capsid protein	A8ASJ6	Listeria_phage	1.4e-89	59.9
AXH04972.1\|2233518_2234121_-	hypothetical protein	NA	NA	NA	NA
AXH04973.1\|2234184_2235387_-	hypothetical protein	A0A059T7W2	Listeria_phage	9.0e-38	30.7
AXH04974.1\|2235262_2236813_-	hypothetical protein	B5LPR1	Bacillus_virus	2.4e-83	37.8
AXH04975.1\|2236860_2238186_-\|terminase	terminase	A0A1S5SA45	Streptococcus_phage	2.0e-139	55.8
AXH04976.1\|2238160_2238727_-\|terminase	terminase small subunit	O03926	Lactobacillus_phage	8.8e-44	69.9
AXH04977.1\|2238780_2238975_-	hypothetical protein	NA	NA	NA	NA
AXH04978.1\|2239713_2240331_+	hypothetical protein	NA	NA	NA	NA
AXH04979.1\|2240617_2241067_-	hypothetical protein	B8R690	Lactobacillus_phage	1.8e-12	37.7
AXH04980.1\|2241240_2241696_-	adenine methyltransferase	A0A2P0ZL79	Lactobacillus_phage	1.8e-68	80.8
AXH04981.1\|2241849_2242230_-	hypothetical protein	NA	NA	NA	NA
AXH04982.1\|2242226_2242745_-	hypothetical protein	O03915	Lactobacillus_phage	7.8e-39	54.6
AXH04983.1\|2242749_2243472_-	oxidoreductase	Q38585	Streptococcus_virus	6.1e-50	44.6
AXH04984.1\|2243468_2243756_-	hypothetical protein	NA	NA	NA	NA
AXH04985.1\|2243752_2244685_-	DnaD domain protein	A0A0P0HRQ2	Lactobacillus_phage	2.5e-56	42.0
AXH04986.1\|2244767_2245733_-	hypothetical protein	A6M982	Geobacillus_virus	2.2e-63	53.6
AXH04987.1\|2245744_2246275_-	hypothetical protein	E9LUU0	Lactobacillus_phage	1.8e-54	58.6
AXH04988.1\|2246292_2246406_-	hypothetical protein	NA	NA	NA	NA
AXH04989.1\|2246538_2246667_-	hypothetical protein	NA	NA	NA	NA
AXH04990.1\|2246734_2247022_+	hypothetical protein	A0A2H4JEH2	uncultured_Caudovirales_phage	4.3e-23	50.0
AXH04991.1\|2247271_2247784_-	transcriptional regulator	D6PST4	Lactobacillus_phage	2.1e-28	43.5
AXH04992.1\|2247851_2248157_-	DUF771 domain-containing protein	NA	NA	NA	NA
AXH04993.1\|2248168_2248339_-	hypothetical protein	NA	NA	NA	NA
AXH04994.1\|2248340_2248604_+	hypothetical protein	O03903	Lactobacillus_phage	9.8e-06	85.7
AXH04995.1\|2248736_2249003_-	hypothetical protein	O03906	Lactobacillus_phage	6.1e-40	96.6
AXH04996.1\|2249169_2249568_+	transcriptional regulator	O03970	Lactobacillus_phage	1.5e-66	95.5
AXH04997.1\|2249576_2250008_+	hypothetical protein	O03904	Lactobacillus_phage	2.4e-70	86.7
AXH04998.1\|2250059_2250986_+	hypothetical protein	NA	NA	NA	NA
AXH04999.1\|2251144_2252308_+	deoxyribonuclease	NA	NA	NA	NA
AXH05000.1\|2252538_2253111_+	hypothetical protein	NA	NA	NA	NA
AXH05001.1\|2253097_2253529_+	hypothetical protein	A0A1Q1PVT2	Staphylococcus_phage	8.0e-05	25.2
AXH05002.1\|2253803_2253980_+	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	3.9e-11	53.4
AXH05003.1\|2254177_2254972_+	hypothetical protein	NA	NA	NA	NA
AXH05004.1\|2254974_2255802_+	DUF3037 domain-containing protein	NA	NA	NA	NA
AXH05005.1\|2255921_2257043_+\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	5.8e-47	32.4
2257268:2257284	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2449320 : 2457834

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH05179.1\|2449320_2449899_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.9e-22	35.0
AXH05180.1\|2449891_2450917_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	8.4e-61	41.7
AXH05181.1\|2450913_2452368_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-50	34.0
AXH05182.1\|2452352_2454572_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-144	39.1
AXH05183.1\|2454564_2455245_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AXH05184.1\|2455244_2455499_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AXH05185.1\|2455500_2456232_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	2.1e-37	37.3
AXH05186.1\|2456234_2457365_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AXH05187.1\|2457348_2457834_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage