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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP031252 Neisseria elongata strain M15911 chromosome, complete genome 1 crisprs NA 0 4 0 0

Results visualization

1. CP031252
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031252_1 234208-235820 Orphan NA
24 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 MT777452 Bacillus phage Baseball_field, complete genome 10568-10601 7 0.794
CP031252_1 1.25|235483|34|CP031252|CRT 235483-235516 34 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 428-461 7 0.794
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 NZ_CP040940 Cetia pacifica strain TB6 plasmid unnamed1, complete sequence 84459-84492 8 0.765
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 KY744230 Sulfolobus islandicus rod-shaped virus 10, partial genome 29777-29810 8 0.765
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 KY744228 Sulfolobus islandicus rod-shaped virus 9, partial genome 31750-31783 8 0.765
CP031252_1 1.17|235286|34|CP031252|CRISPRCasFinder,CRT 235286-235319 34 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 300126-300159 8 0.765
CP031252_1 1.17|235286|34|CP031252|CRISPRCasFinder,CRT 235286-235319 34 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 314601-314634 8 0.765
CP031252_1 1.25|235483|34|CP031252|CRT 235483-235516 34 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 696551-696584 8 0.765
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 NZ_AP019832 Leptotrichia trevisanii strain JMUB3870 plasmid pJMUB3870-1, complete sequence 15198-15231 9 0.735
CP031252_1 1.3|234371|34|CP031252|CRISPRCasFinder,CRT 234371-234404 34 NZ_CP023000 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence 691224-691257 10 0.706
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 NZ_CP045361 Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence 142185-142218 10 0.706
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 AP013441 Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22-MedDCM-OCT-S33-C34 16306-16339 10 0.706
CP031252_1 1.3|234371|34|CP031252|CRISPRCasFinder,CRT 234371-234404 34 NZ_CP019065 Rahnella sp. ERMR1:05 plasmid unnamed3, complete sequence 14569-14602 11 0.676
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 CP024686 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence 271299-271332 11 0.676
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 KX397369 Erwinia phage vB_EamM_Kwan, complete genome 164770-164803 11 0.676
CP031252_1 1.8|234698|34|CP031252|CRISPRCasFinder,CRT 234698-234731 34 NC_049962 Bacillus phage SerPounce, complete genome 12519-12552 11 0.676

1. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to MT777452 (Bacillus phage Baseball_field, complete genome) position: , mismatch: 7, identity: 0.794

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
aaaaagaaaaagaaaaaaattagagaaaaaatgg	Protospacer
*  .**************** ***** ****.* 

2. spacer 1.25|235483|34|CP031252|CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 7, identity: 0.794

-----tcgtaaatgcggccaaaccacggcaggccgaagt	CRISPR spacer
ggccgtcgt-----cggtcaaaccacggcaggccgaagc	Protospacer
     ****     ***.********************.

3. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
aacttgaaaaagaaaaaaaagagagatgaaataa	Protospacer
* *  ************** *******.***.. 

4. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to KY744230 (Sulfolobus islandicus rod-shaped virus 10, partial genome) position: , mismatch: 8, identity: 0.765

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
attaacaaaaagaaaaaaattatagataaaaaac	Protospacer
*...* ************** * ******** .*

5. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to KY744228 (Sulfolobus islandicus rod-shaped virus 9, partial genome) position: , mismatch: 8, identity: 0.765

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
attaacaaaaagaaaaaaattatagataaaaaac	Protospacer
*...* ************** * ******** .*

6. spacer 1.17|235286|34|CP031252|CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.765

ggcttcggcattacacgcaagggcaatggctcgg	CRISPR spacer
taccttgggattacatgcaagggcaatggctatg	Protospacer
 .*.*.** ******.***************  *

7. spacer 1.17|235286|34|CP031252|CRISPRCasFinder,CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.765

ggcttcggcattacacgcaagggcaatggctcgg	CRISPR spacer
ggcttcggcattgcccgcaagggcgaggtggcgc	Protospacer
************.* *********.* *   ** 

8. spacer 1.25|235483|34|CP031252|CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.765

tcgtaaatgcggccaaaccacggcaggccgaagt	CRISPR spacer
ccgcacgtgcggccaagccacggcacgccgacgc	Protospacer
.**.* .*********.******** ***** *.

9. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to NZ_AP019832 (Leptotrichia trevisanii strain JMUB3870 plasmid pJMUB3870-1, complete sequence) position: , mismatch: 9, identity: 0.735

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
aagaaaaaaaagaaaaaaaggagagagaaaaaaa	Protospacer
*  .*.************* ****** **** . 

10. spacer 1.3|234371|34|CP031252|CRISPRCasFinder,CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 10, identity: 0.706

atataagtcaagcggatcacgcgggacatggccc	CRISPR spacer
atcgttaccaagcgcatcacgctggacatggcgg	Protospacer
**    ..****** ******* *********  

11. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to NZ_CP045361 (Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence) position: , mismatch: 10, identity: 0.706

----accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
ttgcccc----taaagcaaaaaatgagagaaaaaactt	Protospacer
     **     **** ************* ***** .

12. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to AP013441 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22-MedDCM-OCT-S33-C34) position: , mismatch: 10, identity: 0.706

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
aaaaagaaagaaaaaaaaatgagagatactaaag	Protospacer
*  .*****.*.****************  * . 

13. spacer 1.3|234371|34|CP031252|CRISPRCasFinder,CRT matches to NZ_CP019065 (Rahnella sp. ERMR1:05 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

atataagtcaagcggatcacgcgggacatggccc	CRISPR spacer
tcgatcatcaatcggatcacgcgggagatggggc	Protospacer
 ..   .**** ************** ****  *

14. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 11, identity: 0.676

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
ttatatgaaaagaaaaaaatgggagatacaatta	Protospacer
 .  * .**************.****** **.  

15. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to KX397369 (Erwinia phage vB_EamM_Kwan, complete genome) position: , mismatch: 11, identity: 0.676

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
ataccccaaaagaaaaaaatgagacgtaaaaaat	Protospacer
*.     ***************** .***** ..

16. spacer 1.8|234698|34|CP031252|CRISPRCasFinder,CRT matches to NC_049962 (Bacillus phage SerPounce, complete genome) position: , mismatch: 11, identity: 0.676

accgagaaaaagaaaaaaatgagagataaaacgc	CRISPR spacer
atattttaaaagaaaaaaatgaaagagaaaaaca	Protospacer
*.     ***************.*** ****   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage