CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031222	Moraxellaceae bacterium HYN0046 chromosome, complete genome	0 crisprs	DEDDh,csa3,cas3,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9620 : 22313

Burkholderia_phage(37.5%)

integrase,holin

attL 13198:13213|attR 30291:30306

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXI01433.1\|9620_12791_+	hypothetical protein	H9C1A7	Pectobacterium_phage	1.2e-28	51.1
AXI01434.1\|12791_13019_-	hypothetical protein	NA	NA	NA	NA
AXI01435.1\|13126_14062_+	hypothetical protein	A0A2H4J9C3	uncultured_Caudovirales_phage	2.6e-08	32.6
13198:13213	attL	NA	NA	NA	NA
AXI01436.1\|14074_14401_+	hypothetical protein	NA	NA	NA	NA
AXI01437.1\|14501_15146_-	hypothetical protein	NA	NA	NA	NA
AXI01438.1\|15186_16140_+	hypothetical protein	I6NSG7	Burkholderia_phage	4.2e-14	29.6
AXI01439.1\|16150_16459_+	hypothetical protein	I6NTM7	Burkholderia_phage	3.6e-15	55.3
AXI01440.1\|16525_16708_+	hypothetical protein	NA	NA	NA	NA
AXI04420.1\|16758_17034_+\|holin	holin	C7BGD7	Burkholderia_phage	1.7e-16	51.7
AXI01441.1\|17000_17528_+	lysozyme	A0A2D1GPB4	Escherichia_phage	2.7e-23	41.6
AXI01442.1\|17582_17870_-	hypothetical protein	NA	NA	NA	NA
AXI01443.1\|17971_19087_-\|integrase	site-specific integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	2.5e-95	49.2
AXI01444.1\|19275_19554_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AXI04421.1\|19645_20485_-	DMT family transporter	NA	NA	NA	NA
AXI01445.1\|20600_21359_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
AXI01446.1\|21554_22313_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	2.6e-51	51.4
30291:30306	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1279811 : 1285571

Acinetobacter_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXI02369.1\|1279811_1280495_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.6e-71	70.5
AXI02370.1\|1280659_1281355_-	DNA mismatch repair protein MutS	A0A0P0IDT4	Acinetobacter_phage	8.8e-46	47.5
AXI02371.1\|1281396_1282197_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.7e-81	59.9
AXI02372.1\|1282253_1283318_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.8e-97	53.5
AXI02373.1\|1283307_1283901_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.0e-83	72.8
AXI04569.1\|1284254_1285571_-	adenylosuccinate synthase	A0A285PX35	Cedratvirus	3.8e-66	33.8

DBSCAN-SWA_3

3102967 : 3113520

Rhodoferax_phage(50.0%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXI03854.1\|3102967_3104044_-	hypothetical protein	A0A0E3GMA9	Rhodoferax_phage	4.6e-09	44.4
AXI03855.1\|3104082_3104964_-	hypothetical protein	NA	NA	NA	NA
AXI03856.1\|3104960_3105170_-	hypothetical protein	NA	NA	NA	NA
AXI03857.1\|3105221_3105809_-	hypothetical protein	K7ZJS7	Xanthomonas_citri_phage	3.6e-32	40.1
AXI03858.1\|3105798_3106710_-	hypothetical protein	K7ZMK0	Xanthomonas_citri_phage	6.3e-44	42.1
AXI03859.1\|3106706_3108320_-	hypothetical protein	A0A0E3JSB2	Rhodoferax_phage	9.2e-62	38.4
AXI03860.1\|3108312_3108711_-	hypothetical protein	NA	NA	NA	NA
AXI03861.1\|3108707_3108890_-	hypothetical protein	NA	NA	NA	NA
AXI03862.1\|3108991_3110239_-	hypothetical protein	C8CLI7	Xylella_phage	5.1e-52	34.8
AXI03863.1\|3110310_3111144_-	hypothetical protein	NA	NA	NA	NA
AXI03864.1\|3111156_3113520_-\|portal	portal protein p19	A0A0E3GMB1	Rhodoferax_phage	7.6e-89	30.6

DBSCAN-SWA_4

3720330 : 3737464

uncultured_Caudovirales_phage(14.29%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXI04346.1\|3720330_3720585_-	pyocin activator protein PrtN	A0A2H4JC88	uncultured_Caudovirales_phage	3.8e-07	38.1
AXI04347.1\|3720584_3720833_-	hypothetical protein	NA	NA	NA	NA
AXI04348.1\|3720819_3721062_-	hypothetical protein	NA	NA	NA	NA
AXI04349.1\|3721058_3721442_-	hypothetical protein	NA	NA	NA	NA
AXI04350.1\|3721438_3722098_-	DUF551 domain-containing protein	NA	NA	NA	NA
AXI04351.1\|3722621_3723026_-	hypothetical protein	NA	NA	NA	NA
AXI04352.1\|3723025_3724156_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	1.3e-17	25.9
AXI04353.1\|3724155_3724485_-	hypothetical protein	NA	NA	NA	NA
AXI04354.1\|3724481_3724766_-	hypothetical protein	NA	NA	NA	NA
AXI04355.1\|3725049_3725781_-	helix-turn-helix transcriptional regulator	A0A2H4J597	uncultured_Caudovirales_phage	9.3e-54	49.3
AXI04356.1\|3725914_3726196_+	hypothetical protein	A0A1B1P9I7	Acinetobacter_phage	8.3e-11	47.3
AXI04357.1\|3726209_3726443_+	DNA-binding protein	M4NJW2	Sulfitobacter_phage	2.3e-06	46.7
AXI04358.1\|3726435_3728052_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	3.4e-125	52.0
AXI04359.1\|3728048_3728789_+	hypothetical protein	A0A1J0GVP2	Pseudoalteromonas_phage	6.3e-50	39.6
AXI04360.1\|3728785_3729556_+	helix-turn-helix domain-containing protein	E2GLZ1	Acinetobacter_phage	5.9e-35	63.6
AXI04766.1\|3729567_3729996_+	hypothetical protein	G3EN88	Psychrobacter_phage	1.8e-17	40.9
AXI04361.1\|3729998_3730529_+	hypothetical protein	NA	NA	NA	NA
AXI04362.1\|3730534_3731158_+	hypothetical protein	NA	NA	NA	NA
AXI04363.1\|3731276_3731630_+	hypothetical protein	A2I2Y8	Vibrio_virus	2.5e-28	62.4
AXI04364.1\|3731824_3732115_+	hypothetical protein	NA	NA	NA	NA
AXI04365.1\|3732421_3733054_+	hypothetical protein	I6S676	Salmonella_phage	1.4e-69	58.5
AXI04366.1\|3733093_3733558_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	1.2e-33	54.7
AXI04767.1\|3733550_3735149_+\|terminase	terminase	I6NML2	Burkholderia_virus	1.0e-174	56.5
AXI04367.1\|3735151_3737464_+\|portal	portal protein p19	A0A0E3GMB1	Rhodoferax_phage	6.5e-85	30.7

DBSCAN-SWA_5

3747260 : 3773330

uncultured_Caudovirales_phage(19.05%)

integrase,terminase,holin

attL 3738340:3738399|attR 3775001:3776814

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3738340:3738399	attL	NA	NA	NA	NA
AXI04379.1\|3747260_3750431_+	hypothetical protein	H9C1A7	Pectobacterium_phage	1.2e-28	51.1
AXI04380.1\|3750431_3750659_-	hypothetical protein	NA	NA	NA	NA
AXI04381.1\|3750766_3751702_+	hypothetical protein	A0A2H4J9C3	uncultured_Caudovirales_phage	2.6e-08	32.6
AXI04382.1\|3751714_3752041_+	hypothetical protein	NA	NA	NA	NA
AXI04383.1\|3752141_3752786_-	hypothetical protein	NA	NA	NA	NA
AXI04384.1\|3752826_3753780_+	hypothetical protein	I6NSG7	Burkholderia_phage	4.2e-14	29.6
AXI04385.1\|3753790_3754099_+	hypothetical protein	I6NTM7	Burkholderia_phage	3.6e-15	55.3
AXI04386.1\|3754165_3754348_+	hypothetical protein	NA	NA	NA	NA
AXI04768.1\|3754398_3754674_+\|holin	holin	C7BGD7	Burkholderia_phage	1.7e-16	51.7
AXI04387.1\|3754640_3755168_+	lysozyme	A0A2D1GPB4	Escherichia_phage	2.7e-23	41.6
AXI04388.1\|3755222_3755510_-	hypothetical protein	NA	NA	NA	NA
AXI04389.1\|3755611_3756727_-\|integrase	site-specific integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	2.5e-95	49.2
AXI04390.1\|3757013_3757268_-	pyocin activator protein PrtN	A0A2H4JC88	uncultured_Caudovirales_phage	3.8e-07	38.1
AXI04391.1\|3757267_3757516_-	hypothetical protein	NA	NA	NA	NA
AXI04392.1\|3757502_3757745_-	hypothetical protein	NA	NA	NA	NA
AXI04393.1\|3757741_3758125_-	hypothetical protein	NA	NA	NA	NA
AXI04394.1\|3758121_3758781_-	DUF551 domain-containing protein	NA	NA	NA	NA
AXI04395.1\|3759304_3759709_-	hypothetical protein	NA	NA	NA	NA
AXI04396.1\|3759708_3760839_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	1.3e-17	25.9
AXI04397.1\|3760838_3761168_-	hypothetical protein	NA	NA	NA	NA
AXI04398.1\|3761164_3761449_-	hypothetical protein	NA	NA	NA	NA
AXI04399.1\|3761732_3762464_-	helix-turn-helix transcriptional regulator	A0A2H4J597	uncultured_Caudovirales_phage	9.3e-54	49.3
AXI04400.1\|3762597_3762879_+	hypothetical protein	A0A1B1P9I7	Acinetobacter_phage	8.3e-11	47.3
AXI04401.1\|3762892_3763126_+	DNA-binding protein	M4NJW2	Sulfitobacter_phage	2.3e-06	46.7
AXI04402.1\|3763118_3764735_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	3.4e-125	52.0
AXI04403.1\|3764731_3765472_+	hypothetical protein	A0A1J0GVP2	Pseudoalteromonas_phage	6.3e-50	39.6
AXI04404.1\|3765468_3766239_+	helix-turn-helix domain-containing protein	E2GLZ1	Acinetobacter_phage	5.9e-35	63.6
AXI04769.1\|3766250_3766679_+	hypothetical protein	G3EN88	Psychrobacter_phage	1.8e-17	40.9
AXI04405.1\|3766681_3767212_+	hypothetical protein	NA	NA	NA	NA
AXI04406.1\|3767217_3767841_+	hypothetical protein	NA	NA	NA	NA
AXI04407.1\|3767959_3768313_+	hypothetical protein	A2I2Y8	Vibrio_virus	2.5e-28	62.4
AXI04408.1\|3768507_3768798_+	hypothetical protein	NA	NA	NA	NA
AXI04409.1\|3769104_3769737_+	hypothetical protein	I6S676	Salmonella_phage	1.4e-69	58.5
AXI04410.1\|3769776_3770241_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	1.2e-33	54.7
AXI04411.1\|3770301_3771831_+\|terminase	terminase	I6NML2	Burkholderia_virus	1.6e-172	58.1
AXI04412.1\|3771833_3773330_+	hypothetical protein	A0A0E3GMB1	Rhodoferax_phage	6.3e-65	34.7
3775001:3776814	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage