CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP022339	Cardinium endosymbiont of Sogatella furcifera strain cSfur chromosome, complete genome	4 crisprs	PD-DExK,WYL,RT,DEDDh,cas3	0	0	0	0

Cas Category Instructions

Results visualization

1. CP022339

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CRISPR-Cas detection and classification

Crispr_ID: CP022339_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022339_1

107611-107705

Orphan

Consensus_repeat	Method
CATTAGAACCTGACAAAACAGAG	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of CP022339_1

>merge|CP022339|1|107611-107705|CRISPRCasFinder
TATTAAAACTTGATAAAACAGAGACTGCACCAGTGTCATTAGAACCTGACAAAACAGAGCCCGCACCAGTGCCATTAAAACCTGAGCAAACAAAG

>CP022339|1|1|107611-107705|CRISPRCasFinder
TATTAAAACTTGATAAAACAGAG	ACTGCACCAGTGTCATTAGAACCTGACAAAACAGAGCCCGCACCAGTGC
CATTAAAACCTGAGCAAACAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP022339.1\|AXI23916.1\|85935_86202_-\|Winged-helix-turn-helix	unknown	unknown	gnl\|CDD\|379233
CP022339.1\|AXI23923.1\|105506_107339_+\|ABC-transporter-transmembrane-region	unknown	unknown	gnl\|CDD\|224055
CP022339.1\|AXI23920.1\|98098_101644_+\|Sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
CP022339.1\|AXI23928.1\|116779_117394_-\|hypothetical-protein	unknown	unknown	unknown
CP022339.1\|AXI23915.1\|84583_85771_+\|Phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|376298
CP022339.1\|AXI23918.1\|93242_93728_+\|Glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
CP022339.1\|AXI23924.1\|108802_109255_+\|Flagellin-N-methylase-containing-domain-protein	unknown	unknown	gnl\|CDD\|235356
CP022339.1\|AXI23921.1\|101753_104219_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
CP022339.1\|AXI23930.1\|119281_120019_+\|Transposase-IS116/IS110/IS902-family	unknown	unknown	gnl\|CDD\|376773
CP022339.1\|AXI23919.1\|96475_97873_+\|Sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
CP022339.1\|AXI23931.1\|120435_121674_-\|Mutator-family	unknown	unknown	gnl\|CDD\|307151
CP022339.1\|AXI23927.1\|116028_116583_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|234840
CP022339.1\|AXI23914.1\|84181_84556_+\|Virulence-associated-E-family-protein	unknown	unknown	unknown
CP022339.1\|AXI23933.1\|122781_124749_-\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
CP022339.1\|AXI23932.1\|121706_122633_-\|Ankyrin-repeats-containing-protein	unknown	unknown	gnl\|CDD\|293786
CP022339.1\|AXI23929.1\|117555_118620_-\|hypothetical-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
CP022339.1\|AXI23917.1\|89519_92960_+\|alpha-subunit	unknown	unknown	gnl\|CDD\|235554
CP022339.1\|AXI23922.1\|104191_105412_+\|putative-oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|223708
CP022339.1\|AXI23925.1\|109296_111312_-\|hypothetical-protein	unknown	unknown	unknown
CP022339.1\|AXI23926.1\|111422_115913_-\|Afp14-like-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022339.1\|AXI23916.1\|85935_86202_-\|Winged-helix-turn-helix	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	3.27459e-07
CP022339.1\|AXI23923.1\|105506_107339_+\|ABC-transporter-transmembrane-region	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.10133e-147
CP022339.1\|AXI23920.1\|98098_101644_+\|Sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	2.38633e-60
CP022339.1\|AXI23915.1\|84583_85771_+\|Phosphoglycerate-kinase	gnl\|CDD\|376298	pfam00162, PGK, Phosphoglycerate kinase.	1.03908e-152
CP022339.1\|AXI23918.1\|93242_93728_+\|Glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	4.08817e-48
CP022339.1\|AXI23924.1\|108802_109255_+\|Flagellin-N-methylase-containing-domain-protein	gnl\|CDD\|235356	PRK05170, PRK05170, YcgN family cysteine cluster protein.	2.25521e-63
CP022339.1\|AXI23921.1\|101753_104219_+\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
CP022339.1\|AXI23919.1\|96475_97873_+\|Sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	1.08753e-41
CP022339.1\|AXI23931.1\|120435_121674_-\|Mutator-family	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	9.47036e-104
CP022339.1\|AXI23927.1\|116028_116583_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|234840	PRK00802, PRK00802, DNA-3-methyladenine glycosylase.	6.65368e-78
CP022339.1\|AXI23933.1\|122781_124749_-\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	4.50419e-135
CP022339.1\|AXI23932.1\|121706_122633_-\|Ankyrin-repeats-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.31962e-07
CP022339.1\|AXI23929.1\|117555_118620_-\|hypothetical-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	1.08181e-80
CP022339.1\|AXI23917.1\|89519_92960_+\|alpha-subunit	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
CP022339.1\|AXI23922.1\|104191_105412_+\|putative-oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|223708	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].	9.09642e-111
CP022339.1\|AXI23930.1\|119281_120019_+\|Transposase-IS116/IS110/IS902-family	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	8.27317e-24

>CP022339.1|AXI23923.1|105506_107339_+|ABC-transporter-transmembrane-region
MRIYSRILGYAGPLWPCAFYYFSAILLSIVFGLATYGLVIPLLKVLFNQEELNRLLWEDQVMPTWQLNMHYLTSLFNYFFIKIIIDYGKIRALCLLAFLFMCANAISGFFRYIADVTMAKVRIHLVHNLRLALFKKSLTLPVEYFTDHKKGDIIARITIDIQEVEHAVADTLRLFLKEPTQLFCYIVVLFYMSPSLSIFTLLFLPIVGWAIAQLIQSLRKWTDATQQSLGHLMHLIEGTVSGIRIIKLFGAQKYAIDQFKKEGKVYASTHMDVAKKSYMLAPVSASLSVVAVSIVLAYGGHLILLDRSLLTPSTFIAYIIICSQALIPIKMIARSIGHIQRGIAAGRRIFDVLDEKYAFKRYSGASMSITFKDKIVFKNISFAYNEGKEVLHQINFTIQKGEMIALVGASGSGKSTLLSLLSGLYQPNSGVIEIDDLPISQMSEASLRHLMGVVTQESIVFNDTIYNNILLNRTGFHKEAVLQAAQIACAHDFIMALPEAYYTIIGDNGSKLSGGQRQRICMARALLGNPPILILDEATSALDMVAERNLQRGALLKDKTSIVVAHRLTTICDADRIIVLEQGKIVEEGTHASLLAQGGVYKQLLVGQQR
>CP022339.1|AXI23922.1|104191_105412_+|putative-oxygen-independent-coproporphyrinogen-III-oxidase
MWHRGSVGVGKVSVQFTTHQMPLSKAQTNSQAGIYLHIPFCKQACHYCDFHFSTNLSFKSLMVHSIQKELALRQDYLKGIPITSIYFGGGTPSLLTLVEIEQLLNQVVRCFPIAPAAEITLEANPDDLTLEKLQGLNHMGVNRLSIGIQSFNDQALRYMNRAHTSSMAQNSVAWARTAGFDNLSIDLIYAIPGTTMCDWHADLTQALLLEPAHISTYCLTIKPKTVFGYWHKQGSLVELDETFAAEQFERTVAACAQQGYLHYEISNFCKPEKYSRHNTNYWKSGPYIGVGPGAHAYNGQQRQWNIAHNALYIKAIQNGKLPYTEETLTVANHVNEYMMTSLRTCWGCDFDWIYAQYGIDLMAIQKDYLEKIMQWKLAYLTGHILYLTNSGKLLADKIASDLFVDG
>CP022339.1|AXI23921.1|101753_104219_+|valine--tRNA-ligase
MTTPTLPPHYNFVERETYWQHFWEAAALYSWDPTDPDTFVVDTPPPTISGQLHVGHACSYAQADFIVRFQRMLGKNIFYPMGFDDNGLPTERLVEKQKGVRAAHMDRTAFIKLCQEVVDREEEKFRHLFKAMALSVDWSLEYQTISPLSRKLSQMSFLDLLKKGEVYRSAQPMLWDPVDGTALAQADIEDQERTTYMNDILFLHEATQAPLPIATTRPELLPACVALFYHPDDMRYQHLAHTYALTPIFNMRVPILADVLVQPNKGTGLVMCCTFGDQTDIVWWKKHQLPTCIILNKQGRVTHVGPLQGLKVTEAREKIIQILKDQSLLVKQTLVQQSVKCAERSGAPLEIRTTPQWFVRTIDHKAALLAKVKQLKWHPAAMQHRLEEWIAGIAWDWSISRQRYFGVPFPVWYSKRSGEEGKILVPTVDQLPVNPLEDLPIGYTREEVEPDYDVMDTWATSSISPQLSSHAINKESSVDYNRHLQLFPMDLRPQAHEIIRTWAFYTLLKAHLHEDSLPWNHIMIHGWCLASDKQKMSKSKGNVLLPEKLLTTYGADVIRYWAANARLGADTCYCENVMKNGKRLVTKLWNAGKFILGHFDKIEGLGQPLQWQKVTHTLDRWLLESLAALTDKVHAHLLAYGYAEALEQVEKFFWSVFCDDYLELSKARVYNALQQDPQGQYSAMVTLYHAFYGLLQLFAPILPHITEELSQGLYPHKGSIHQRGNWPTWRLETTIPQAQVDQVVHLREIIGLVRKAKADGQLSIKAPIQLLTISGTVLDEDIYQDLKAVTAATEIVFGDLTSSPMDIQVVGKQCGIGVVWG
>CP022339.1|AXI23920.1|98098_101644_+|Sodium:solute-symporter-family-protein
MICLNMSLFIVAAFLLLTLIVGGYFSRKKTTFREYAVGHKQFATATLVATVLATFFQGGGLVRNIECVYDLGLWFTVILLLVPLGMWSTSRFALRMGPFMQHLSLAETIGSIYGTYAKVITVLVSICCNILLITSQIVIVSQTIGICVTLDNPYVIPVLSTSILIFYSTFGGGRAVTLTDVFQFITFSIVIPLLCWFAFAKIGKPVATIVPILQSHTKFQFTHLFHSNNQLIHIVLLLLADIPSSIVASPLTQRVYMAASPIQAQKVFSYAAIFSFIIQVFIVLIGLFIFVGASNLPKVEIWPYIMGHIPPLFKGFVASILAMVMSTADSCLNTCAVMVSHDIAKSLIKQKKISDSTQLKIARWTTLTVGLLSMVITFKYNDLLKLMYWGLNCRVPILTAPFILAVFGFRGTPRTALVGMTTGACTILAWNKWIKPAIEIDGSFMAMVANGLAMLAAHYLLKQPKSAGWVKPDHEFKQVQQAHARNRAERREMIKNGWANRKSTLSKLIPSDAALRLTGLYVVITAILGYWFIRPDHIYWAICQGLVGALLTSSKTFFSSAIPAWCIGLGWLIGLVVYLPLSLLGHWWYLVDPIFTASLSLAHCAVILWVLPLHLGIGVVTTTLLIAIYPMAIGLTLPVLSALFPLFIAGLVVFAMAIYFKVKVRNYTTQILYLKDQEGIREAQQLKASLYDSGTVPATIVNKSKGYGAILTQVVGKIEESISFLDSNVPLYKQDFQSIINKLYDWVAYFNRRERAKKHALLQPTKITLDKLIRKVELALGQEVAHPPRLLIEKINDSNGAPSPHMVCDINQIAYLLVQAVLRVGKRAGTSIVHIRFHNTALQFKQADAIDNSYPLSMLFQATALVVSQATTLPEVMVKVKPVYDDEIDMMGHQGKQDTPPSIDLQQETISSIVGGHYGHLEIFDGEQQPAMLLVLPSNVTDILSKITINLPLDELTLETPVTPKEQADSMMALMQFHDHVSRSSHRADPIDIGIISGLLLLLRQHFGFKRHASGQLFYVRAVGIAEIVVKWVFHSPKVIYAALLYELVRRTCLPLSYVKEHYNLGVYAFVLNVVGIDKRQALDHPSLLYVQNRLQEAIKEEHVQLSVLFIKLAERLYDLRHAAGYSHLSEVQHMAQETLTIDVELANAYLGPEIGVALEKAAKQALELGKHRRKDQDNEL
>CP022339.1|AXI23919.1|96475_97873_+|Sodium:solute-symporter-family-protein
MGVLNLPLLMVATFLLLTLGIGLCFTKISTSFREYALGDQTWHTAPLMGTLLTLIYGGGRLMVGVEQVHNFGLAWVFFILFTSFLPHWVISWLALRMTPFMRNLSMSESIGRVYGTYPRIITGLANICFAIATIAIQINVMSRSISMCIDVEHSRMITSLVILVLFIYSRIGGMRIITFIDIAQTFVFFLIIPFLAFSIFEATGRPDVLSFLRTQESFQFHTLFQFEPNQLAIFTLFLSSLVSSINPPIIQRIYMSADCFQAGMVFFFTGCLSLFIALFIILLGLYTFVAAPHLSVAEVWHYIIAHISPVCKGFVVIGLLAMAMSTADTYLNSCAVMFSNDIASSMMAKKSFPYPIQLRLAKVIALFIGIITVLFSLYCSDLFALLKFRFDCFIPIVIAPFILAVLGFRGGSSTALMGMAAGTVTILAWNRWVEPATAMNGSFIAMVVNGLVMRVVHYVSLKLKT
>CP022339.1|AXI23918.1|93242_93728_+|Glutathione-peroxidase
MHTNTAKDFSFTLLDGTLFKFSNQDVLVVNTASQCGFARQFNALQELHDRYHAQGFTVLGVSSQSFRKQEFDQPCEIAAAIKNKCNRVTFPITQLAAVRGKSIHPFYAWAATQVSLLGRPKWNFHKYLIGKDGRCITWFSSVTDPLAPNVIDAVEAALANQ
>CP022339.1|AXI23917.1|89519_92960_+|alpha-subunit
MMHNFCHLHCHTEYSLLDGAAKVERLIAANKQLGMDALAITDHGNMFGVPHFVSAAAKEGVKPIIGCEFYIAPDRHNHKDKTRYHQLLLAKNAIGYQNITKLSSLGFLEGYYYKPRIDKALLKQYKEGLIATTCCLGAEIPKTIIRYGEAAAEKLFVEWLELFGADYYIELQRHGIQEQEVCNAVLLRWAEKYNVPVIATNDVHYTTQQDSLAQDVLLCLQTGKDYNDPNRMRFSNDQFFLKSPEEMALLFADVPAAITNTLALVEKIETPSLTRDVLLPIFQLPSGFSDANRYLSHLAFSGARVKYGAISMEVESRLNYELAIIAQTGFAGYFLIVQDFIEAAVQLGVIVGPGRGSVAGSLVAFCIGITKIDPLRYNLLFERFLNPERVSMPDIDVDFDDEGRRKVIDYVVQKYGRNQVASIITFGSMAAKSAIRDVARVLGLPLARANYLTKLIPDRLGITLSEAFEEVGELAELKKAIATPEGKVLDLAETLEGLVRHTGIHAAGIIIAPNDIIDYIPIKTDKNADLLVTQYDGSVLEKVGMLKMDFLGLKTLSIIKDALLLIQQNRAITIDIDLIPLDDPLTFQLYQSGSTKGTFQFESEGMRQWLMKLQPTTMEELIAMNALYRPGPMQFIPNFIARKHGKEAIEYPHPLLETILKPTYGIMIYQEQIIQTAQAMAGYTLAGADLLRKAMGKKNATEMARQRDVFVTGAAKKHQIPKEKALAIFEIMEKFAQYGFNRSHAAAYSLIAYQTAYLKAHYPTEYMAAVLTHNQGDMDKITFFMEESRQQGLSVLGPDINASQVNFSAGLHKEIRFGLGAIKGAGEAAVTAIIAARAQKGAFKDIFDFVEAVQLKTVNKKTMEALALSGAFDTFKGLHRRQYVYEASGSSFIEKVIQYRNRIQKERTEALQSLFAASAYSQIKRPEPVDCPPYEPLEQLRIEKELVGFYISGHPLDPFKVDIASFCNATTQNILGTSRKAVTIAGMLTAATIKQNGKGNAYALLTLDDYCGSLNFALFGEDYLKYKHLLAVGTLLFLTGSVAPRYGSQAMQTFKPQTMHLLEEMRERMAKGVHLTLEQHHINPLLVHELEAGIKRYPGKYLIKISIVDHDAQITIPTLSTQYRVALTNELLDWLNQLSIDFHLFM
>CP022339.1|AXI23916.1|85935_86202_-|Winged-helix-turn-helix
MENKTRKVNAHKTWIQAYETLGSISKTARRCGIARSTLYRCLKRYKLGGLAGLQDKTQRPNKLSKLKCSITNLIGQLRCNNLYESHTL
>CP022339.1|AXI23915.1|84583_85771_+|Phosphoglycerate-kinase
MVGIQGISFKGKKVLIRVDFNVPITDHGVVIDDRRIRSSLPTIQKVIADGGIAILLAHLGRPKHGYEARYSLRRLLPVLSNLLQQPIVFAPDCIGSVVKERIDGLEPGSILLLENVRFHASETLEDRGFAQALAEWGEVYINEAFGTIHRNHVSTTLLPTYFKERYAGYLLQQEIAAIDKLFSKEQSPVVAIMGGNKLVDKAKPIQGLMRYVDHILIGGGLILPFYYAKQSPSAHTDSEAEGIASRLFDALIRHGHCQLWLPTDVQALPEMDEQLTPSTLSLADLPYDSYVVDIGPVTQARFAALIRQAKTILWAGPIGVFEWDQCALGTVSIAQAIAQATAHGAYSIVGGGDTAAAIKQAGYVNQVSYISTGGGALLAYIAADRKLSSLEALKQ
>CP022339.1|AXI23914.1|84181_84556_+|Virulence-associated-E-family-protein
MIMLVEKRPVVETEQKLVVDQGVNKEKTIKTKEMILQRTNQVSLISHLVSGFDPVNVEGNYQSKSSSRVSIYFGKVSKKWKFKCHQTDQEGDVFALWGYCYGLDYPTQLNDILEHMNRKLSLGL
>CP022339.1|AXI23924.1|108802_109255_+|Flagellin-N-methylase-containing-domain-protein
MDTTDKKPFWMDTPLDKMTPSQWESLCDGCGKCCLLKIQEAATQKLHTTKICCRLLNTRTCQCSNYKERFRYVDDCIKLNPTNVQTITWLPKSCAYRLVKEKKTLPDWHPLITKDPQSTVKSGHSVKGFVVHPALVNKPIITYLLEETTP
>CP022339.1|AXI23925.1|109296_111312_-|hypothetical-protein
MINMLHKHLRYLSLSFIYSLWGGGCPRCTQAPIASIVDSQDSALPNKPVVACSFCRPLGSLSCMGGAKTDWFFRFKGHISNVAPASKGQVAFIGCLDGATCHEPATFDTELLSLVKSAMDVKNEVEKFIWLDKDRFIYWNKINKVGAGPIEWTIQAEEETYKKLTSKKYTMHMIYAPSGASAQDYVVSTTPFQMDRTETHPSLPNYRGIRLEAMDAIENQGKNGTGWFLKGGLTNFYPKDEKVGFLLVKEGINPYHLVQQIITSGDEWPTQVTSFNDEMIVIPGRLRRMDPPIIGTLCNSQSPIQGGKFKILCYLIQGPHYYLSQMGDILSNVTESPLVQESVPPSITFTGNSHSLKVLDLKLYREQASGQVRAVKLSDCTIEYTVNDQVTPLPPNAEVALFFLPKDTIWRTDKLETLFEASPRSHSNTSVTDDGTICLVTDVRKPLDSSCIDFFSHGTDYEYMVCLFIDHKLKFYRQREPLSIEVDEVNETKPPKPELKEAAKPDKPKITLDHTKTHVTIIKTGFFEPDDVFYKLPTVHITPSGFDIDARRHRGFIVFIDDTNIKEDISKYITEHSKKNLYLINENKNKEKVVLIFKEEVEKENLENYLHRLYQKVNPRKADEPVKCDNVYISYWMQYKNELIWSERVPINMTVLPKKMKNIEESYIQGK
>CP022339.1|AXI23926.1|111422_115913_-|Afp14-like-protein
MPTKNHHVILRSRIEVTIDQHSQNSMLYHTVQQAVQKRIIPILSKLFAQYVPSDVVIHLDKLVIDGGDVYLSTLDKQLPCQVEQVLMLKLQEQMRKVIHNPTAVIPLPEAKRQAIAHYLSEGHLAWWMIERSEKQIEKIYLELLHYTPLLIEQLWYDLHKKEKAVQRCMTFFARSTVERTLSCLLKQPIAYFKPILTEIGILLQQKRVATNLLDTKQLFATTLLSIINQPRGKVDRMGFLRMLLKQVALQTSTSYEKMLEALQIYYAQNEKKPSFDSTTKALVLQLRDLAITPLKFGYESIKNKEQIVKELDKIANNGMAPHQLSAAIGSMKRAMDRTGIRPLVKSWLQEAKNREKLVQNLPDRLFVACLASIDPSIVGIFSDCMQIATATTAATTPACAIKAMTLAYCAFEHSKTFYLEEMHALFRTHMANGVISPQQCAKLLTTQTYNPAIKAIIAPLVSISTLSSEMPKETTCLWPVMPDANNKAAMQPPIIQHSLPASIPLSMEWLPKLETVLIAFLESTECQANIDHLKNMFITAAVDAPSTRQYIGRVIGYLAPYTSLSADALCDRLSDIAEQKAYPDLAACLARVSPKVDQESYIVQTYSTSKPVDASQTKQHTTRLDGTHNHPLADVVDFLVDNVLPNDQLVPAYFIAKCLERATPKQIRDQLAPWCQEATILKKLMQHATEITVAKLLQAFVPCSHQMLDRLERVMMQVLQRTQQQGHIRSIKEIFIAAAIRETPPEKQYIERIVFHLSAQTASPPTRLCDALIDAAREETDYQLVEIFSFLKEKLTPLKLTKIDEVDLMFLSTHETLDQALVPLYYSRLLPAIKEMVRQSVELSPSIIDQLVAQHLPNLPLQETMRITLYKQIADVILGKKKRIIERWHLFLHTGKLGNYTDATALLSDVLTHLSTFSLAQDKAHVRQRLIANFTHTQLMQLIQRHSAIGKTLTTFIQGSYQWWCDTQGALGEQNMTKNLFWDGVLKTLPQTSIAPDDWLADLTTELSNVLEVTPTTLLTTFQLLDTKEIPETLTASLNRLQEKYSQVFQQQARQRGYHAPILIKLYLLLNGNLSLFAQQYHLTIERLGDELIQFMEDQPLELPKLLADQDNHQVTARRIVHYFSEEVTTKIITCLAKDNAPFVMHYLTLLNHPLLDTTIPFHHPSTWKKELCISIMHYLISKKSFAAQEFVHSTLLTTCYTQGTIYKIITSIVDTKATNQEADQLITLLKPLIKHMHPSQSALVHQSLEKAPLKTSPQKVRLPEASVQVYTKNTGLVFLWPFLYDFFKLNNLMVDDQFFCDQAAHNAVYLLQYLVTGKLKSPEWQLTLPKLLCGLSYDAVLLPYKPIDETEDIYDQVEEKGTTSDQQLQASQDGTTSKIEIETETSTSSNTMAILSANSQLLMEKVLKRWKSITKLQETDAFQNATLERIVKDYFLNRLGILTSHQADDTTEKKFWHLTMMHQDHDTGDLLPPWSMNKLKLPWMQEEIILFWIPE
>CP022339.1|AXI23927.1|116028_116583_-|DNA-3-methyladenine-glycosylase
MILNRDFFVQDTHTVSTHLIGKLLCFHDFQGIITETESYIGVGDPACHAARGITQRTKVMFGQAGFSYVYFIYGKYYCLNIVTEALNFPAATLIRGIQLIHPPYTYLNGPGKLCQCLGINVTHNAIDVTLSKTLYIKDIGYQLPYKSTSRIGISKGLDKMWRYVITDQASIAAMLPKLVDMAGL
>CP022339.1|AXI23928.1|116779_117394_-|hypothetical-protein
MIGLNLRHINNLGVMNKILQNYFYKLSGLFAATLCINFTNKIVYCALLFTFLTLILNGIAKYHGSKKATVSIVLCTATTLCLLYNKQYYMAGKPISGLIVASLCAILIASYIGLRLFVKLELRYGFALSNGISLPISALVDHLLMGLFFIRIWPMHKVCSVLYKETAYTYLFAVCIYLVSVAILYAKPIYSKTKQRLRWLSCSR
>CP022339.1|AXI23929.1|117555_118620_-|hypothetical-protein
MNKSIINQAYHQLLNDLKTSVASAKYKASLHVNKALVALYHHIGSRILHTQVQERWGTGVIAELSKDLRAAFPEMKGFSPQNLKYMRKFAQVYSQDEIGQQLVDQIPWGHIVVLIYSGLDKSQQKFYIEYTIKNGWSRNSLSIQIETNLYERQAGAITNFDKQLLPPHAALAQATLKNPYLFDFLSLGDETHERALEKGLVAHIEKFLLELGEGFAFLGRQYHIQVEEQDFDIDLLFYHIKLRSFIVIELKSGDFKPEYVGKMNFYLSAVDDLLRHSSDNPSIGLILCRSKVGVLAEYTLRDINKPIGLSMYRLTKNLPSKLQTALPTIEELEAELAKDLDHIEIEDDSSHIPH
>CP022339.1|AXI23930.1|119281_120019_+|Transposase-IS116/IS110/IS902-family
MFVNSSLRYASRLTFSEWLKLIALYGAKMEPKSYQMPVASIQALKQQKTLLAQLKKQLTMSYNLLESFSVLPKTDAVTLKVINQNIASLEEQIAFLEQEMLTITQERCKELYTQISSIQGIGDRTTMELIVGTGGGHHFESAKQFSKYIGLAPTYEHSGSSVRKKGHINRHGNPGLRSLLYIASWSAIRFNKSCKDFYERLKARGKPSKVALIAVANKLIRQVFAIMRDNTFYVDGHVSKLKVSP
>CP022339.1|AXI23931.1|120435_121674_-|Mutator-family
MEEHMNNDYVGLVDYKDLEENILSSIRLGKPLTGKGGALTPLIKKLLEASLEGEMAHHLSSERIVNNRRNGKSCKTFRTSSGSFDLVTPRDRTGSFDPQIVKKRQTNLHPELETKILSMFSSGMSYKSIAAHIEEIYDHKVSAAEISAITDSLLPVINEWRNRPLQSVYPIVFMDGMFFKVKEDGKCVSKCLYTLLGIDQEGKKEVLGFYLSESEGANFWLGVLNELKARGVEDILIACVDGLKSFPAAINNAFPNAQVQVCVVHQIRNSIKYVASKDVKRFLTDLKQVYQASNKEVAEHYLLELEEKWGEKYPMVIKSWQNNWEHLSGYFKYSDPVRRLIYTTNPIESLHRQIRQFTKTKGAFTSVNALYKSVYCAIKKMEDKWTMPLRNWALTISQIDIFFPGRVKSELT
>CP022339.1|AXI23932.1|121706_122633_-|Ankyrin-repeats-containing-protein
MVPNTHQITKQHASSILRAKQIIAMLGCFYFCTALVTCTRNLNNTPSIKQDSLPDKPPCDRSDQDVSEDYNDLDRCLSEVSKALKGDTGAMDFLVRRGKYIDMHTPYKSGSVRVAIVKNSGISLILEYACKSSLSYKKQSNAQPVTLMVTSLDDPYKDPTAPPPSYEKATDSAPPSYEEVTETPAYIAFMKRLIEHKIDLNGWNMRGETLLTEVIKNGDSPGQIAVIQLLLEAGANPNSISNKMQTPLELVKEIKNIKDQEKTVRLLIDYGANPLWALMDETIKKQVRSATISHLEVFDELCQFLKEL
>CP022339.1|AXI23933.1|122781_124749_-|ATP-dependent-DNA-helicase-RecQ
MCYTLHQLGSYPPTMDHIYDLLSNHWGYHSFRPLQESIIKGILDGKDLLVILPTGSGKSLCFQLPALCKEGLTLVVTPLIALMKDQITQLAQRGIHAEAIFSGMSSVEIERRLDNCVYGNVKLLYVSPERLQTDLFKLRAPTMSITTLVVDEAHCISQWGYDFRPSYLNIAQFKQMIPKANTVAFTATATKAVKQDIKDRLQLNHPLLFAQTFYRPNLVYWVRKTAHKEAQLLKALQHTSGPAIIYVNTRKKTETIATFLHNNGITSAFYHAGLTMADRAMKQAIWSENKVRTMVATAAFGMGIDKADVSLVVHLDLPTSLEAYCQEAGRAGRNNTIAYAILWYDLQDIAQLKQKWKESYPTIDQVRKVYQHLVNYYKIAVGSHAFVSYDFDLADFKQTTGLYTKEAYYGLKALESEGFIQLNEAYYQPSKIYIPLSREALYAFQLRHPAFDLCIKALLRLYGGTLFTPYCTVFEKKIAQLIQLTEYKVQEQLYALHRLKVLEYLPQKASPQITFLTSRYLASELPLPIHKIEQKNKIAYQQIEAVIQYVTNNRRCRLATLLDYFDETEAICTQCDSCKEKANPTIDPNDRIAHRKYIMDAIRQGNQDLKKLTASVPHEKEKALLDTIREMLDAKEIYYQTPGQLQISEIAKLLR

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Crispr_ID: CP022339_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022339_2

753552-753650

Orphan

Consensus_repeat	Method
CACTTTTTTATCAAGAAAAAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022339_2

>merge|CP022339|2|753552-753650|CRISPRCasFinder
CACTTTTTTATCAAGAAAAAAGTGGAATAAAATTCATTATGAACCAGTAATGTGGATAGATACTTGATTTTTTGCTTACTTTTTTATCAAGAAAAAAGT

>CP022339|2|2|753552-753650|CRISPRCasFinder
CACTTTTTTATCAAGAAAAAAGT	GGAATAAAATTCATTATGAACCAGTAATGTGGATAGATACTTGATTTTTTGCT
TACTTTTTTATCAAGAAAAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
CP022339.1\|AXI24371.1\|736444_737101_-\|phosphatidylserine-decarboxylase-like-protein	unknown	unknown	gnl\|CDD\|235400
CP022339.1\|AXI24383.1\|759374_760583_+\|pyruvate-dehydrogenase-complex-dihydrolipoamide-acetyltransferase	unknown	unknown	gnl\|CDD\|237001
CP022339.1\|AXI24386.1\|763899_765204_-\|MiaB-like-tRNA-modifying-enzyme	unknown	unknown	gnl\|CDD\|223694
CP022339.1\|AXI24377.1\|745327_748126_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|223256
CP022339.1\|AXI24375.1\|743388_743829_+\|putative-transcription-antitermination-factor-YqgF	unknown	unknown	gnl\|CDD\|340815
CP022339.1\|AXI24370.1\|734767_736270_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
CP022339.1\|AXI24379.1\|753765_754092_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
CP022339.1\|AXI24381.1\|756065_757838_+\|putative-AAA-ATPase	unknown	unknown	gnl\|CDD\|313108
CP022339.1\|AXI24376.1\|744952_745312_+\|large-conductance-mechanosensitive-channel-protein	unknown	unknown	gnl\|CDD\|376605
CP022339.1\|AXI24378.1\|750697_753340_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
CP022339.1\|AXI24369.1\|733866_734601_+\|Ankyrin-repeats-containing-protein	unknown	unknown	gnl\|CDD\|293786
CP022339.1\|AXI24374.1\|742198_743392_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
CP022339.1\|AXI24388.1\|768043_770515_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
CP022339.1\|AXI24387.1\|767013_767901_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372314
CP022339.1\|AXI24372.1\|737344_738181_-\|Cytidylyltransferase-family	unknown	unknown	gnl\|CDD\|366491
CP022339.1\|AXI24373.1\|738458_741212_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
CP022339.1\|AXI24380.1\|754148_756011_+\|ABC-transporter-transmembrane-region-protein	unknown	unknown	gnl\|CDD\|224055
CP022339.1\|AXI24382.1\|757853_759242_-\|tRNA(Ile)-lysidine-synthetase	unknown	unknown	gnl\|CDD\|274129
CP022339.1\|AXI24384.1\|761142_761748_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
CP022339.1\|AXI24385.1\|762188_763589_+\|Helix-turn-helix-domain-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022339.1\|AXI24371.1\|736444_737101_-\|phosphatidylserine-decarboxylase-like-protein	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	1.07217e-96
CP022339.1\|AXI24383.1\|759374_760583_+\|pyruvate-dehydrogenase-complex-dihydrolipoamide-acetyltransferase	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	7.77861e-151
CP022339.1\|AXI24386.1\|763899_765204_-\|MiaB-like-tRNA-modifying-enzyme	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	7.55138e-126
CP022339.1\|AXI24377.1\|745327_748126_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
CP022339.1\|AXI24375.1\|743388_743829_+\|putative-transcription-antitermination-factor-YqgF	gnl\|CDD\|340815	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family. Escherichia coli YqgF has been shown to act as a pre-16S rRNA nuclease, presumably as a monomer. It is involved in the processing of pre-16S rRNA during ribosome maturation. The RuvX gene product from Mycobacterium tuberculosis was shown to act, in a dimeric form, as a Holliday junction resolvase (HJR). HJRs endonucleases specifically resolve Holliday junction DNA intermediates during homologous recombination. Holliday junctions are formed by the reciprocal exchange of strands between two DNA duplexes. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi; they may form homodimers and display structural similarity to RNase H and Hsp70.	7.18678e-46
CP022339.1\|AXI24370.1\|734767_736270_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
CP022339.1\|AXI24379.1\|753765_754092_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.71532e-39
CP022339.1\|AXI24381.1\|756065_757838_+\|putative-AAA-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.21184e-60
CP022339.1\|AXI24376.1\|744952_745312_+\|large-conductance-mechanosensitive-channel-protein	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	5.3496e-36
CP022339.1\|AXI24378.1\|750697_753340_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
CP022339.1\|AXI24369.1\|733866_734601_+\|Ankyrin-repeats-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.45726e-21
CP022339.1\|AXI24374.1\|742198_743392_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	1.5883e-89
CP022339.1\|AXI24388.1\|768043_770515_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP022339.1\|AXI24387.1\|767013_767901_-\|hypothetical-protein	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	9.71243e-63
CP022339.1\|AXI24372.1\|737344_738181_-\|Cytidylyltransferase-family	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	2.1536e-43
CP022339.1\|AXI24373.1\|738458_741212_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
CP022339.1\|AXI24380.1\|754148_756011_+\|ABC-transporter-transmembrane-region-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.15743e-125
CP022339.1\|AXI24382.1\|757853_759242_-\|tRNA(Ile)-lysidine-synthetase	gnl\|CDD\|274129	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). [Protein synthesis, tRNA and rRNA base modification].	1.2865e-61
CP022339.1\|AXI24384.1\|761142_761748_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.26769e-46

>CP022339.1|AXI24378.1|750697_753340_+|alanine--tRNA-ligase
MQSKFIREKFLEFFIQKGHQHQPAVPIIGKDDPSLLFVNAGMNPFKEVILGNQPITAPRVVTVQPCLRVSGKHNDLEEVGVDTYHHTLFEMLGNWSFGDYFKEAAIAWAWELLTEVYQLPKAEIYVTIFAGDAQDGLPKDNEAAAIWAEYLPAERILACGKEANFWEMGEQGPCGPCSEIHIDIRPEAERKTLPAAQLVNQGHPQVIEIWNLVFMEYNRQASGRLVDLPHKHIDTGMGFERLAMVLQGKTSTYDTDVFTPLIAKIQRLAGKPYSDTMAVAMRVIADHLRAVAFAIADGQAPAPTKAAYVIRRILRRAIRYGYSHLGIQTPFIYQLVPVLVAQMEGIYPNLSAQQDYIAQCIQSEETAFLKTLATGLQLFNQLDARNIHQGSIEGRVAFTLYDTYGFPLDLTLLLAKEKGLTVDVAGFQQALQEQKKRSQKDAASSQGDWQVIQTGVQPRFVGYDALAITTSIVQWRAITNKQGVAYQLVLAATPFYPEGGGQVADVGVIISGQQSISVLDVQKEHGLILHTVDQLPTQLAQPQLGQPRLEQPIEARVDPVQRTLVAGNHTATHLLQAALRAVVGDHVVQKGSLVTPALLRFDFAHPTKLSDAQIEAVEAMVNEKIRANIACIEQRAVPLETAKAMGAQALFGEKYGAEVRVIAFDPAYSIELCGGTHLPCTGSIGFFKIIRETAVASGIRRIEALTACQAHQFVTQQAATLNAIAALLKHPKALVQAVEKLLCEKKQLQKQLAVYQAQAIEQIQLSFEQVGGVYLLLQVVQLPHPDALQQLALRYRNQYKKSIILLAATFDQQAHLMMVVSEALAPSYNAHALMQSIASLIAGKGGGQPLLATARGDNPAGIPDALQAIRRLLVSADVIE
>CP022339.1|AXI24377.1|745327_748126_+|excinuclease-ABC-subunit-A
MRPHLADLDTLSPKDFIIIRGARMHNLKNISVAIPRNQLVVVTGLSGSGKSSLILDTLFVEAQRMYVESVSAYARQFLGKLAKPLVDAIQGLSPAIAIQQNVANKNPRSTVGTLTELCDYLYLLYARIGTTYSPISGQKVKKDSVSDVVDYIQQQADGTKVLILYPIAVADQAALVQKLKVEQGKGFTRVMQGDHLFYIEALLAGKERLSLDQPIYGLVDRIVVNKADQDNQYRIADSVQVAFFEGMGHAVVALVGLGQQAFSDRFELDGLTFALPTVSFFSFNTPHGACKACSGLGQITGIDPHKVIPNPALSLVEGAIAPWNGATMSKWLAPLLAAHEALRLPIYAPYSSLTPDQQTLVWQGKGDFLGLNRFFDFCATQTHKIQYSVLLSRYRGKTPCTVCKGSRVRADADCVKIAHHSIIDLLLMPLHDLIAFFDRLSLTPREATMVQRVVVEIKNRLRYLAQVGLAYLTLSRPMATLSGGEQQRIKLATALGSPLFGAIYILDEPTIGLHPRDTDRLVQLLVDLKTQGNTVIVVEHEALVMRAADTIMEIGPEAGAHGGTLVFQGTFPALMQATTHTADYLNGTAAIPLPPRRRPWRKRLLIQEVNLHNLQNVTVAIPLNVCTVVTGVSGSGKSTLIKEVLYPALAARLHQPTSLSGPSTPLSGDWASLQAVELIHHHPLGKSSRSNPATYLAIYDAIRDLFAQTALARSRHYQAGHFSFNSEKGQCPTCRGEGHQKIEMQFMADIYLSCTSCKGSRFKSEIADITYSGKNVAQVLSMTVAEALPFFADHPAIVHKLKVLQKVGLGYIQLGQSSSSLSGGEAQRLKLAYYLEKELADQPILFIFDEPTTGLHMHDVAQLVKAFHALIHQGHTVVVIEHHLDIIKSADWLIDLGPDGGQQGGQVVFTGTPETLIQQSQNHTAHYLKQIM
>CP022339.1|AXI24376.1|744952_745312_+|large-conductance-mechanosensitive-channel-protein
MRFIQEFKKFALRGNVIDLSVGMIMGSAFGKIVTAVIEDLFMPMVNPLLVTDGNWQSIEIGPGIKIGHFIAAVLNFLVISLVIFAVVKLMHGVKKSEEQVAGPTATEKLLIEIRDALKK
>CP022339.1|AXI24375.1|743388_743829_+|putative-transcription-antitermination-factor-YqgF
MKALGRIMAIDYGLKRVGIAVTDPLQIIATPLQTIATPTLFLFLKDYVQKENVVTIVMGMPKGLNGQPSTMSSVVEQVSMRLQQQFPAQRFYYQDERFTSKLAMQGLYQAGYSKKDRASHIDQVSAAIILQSFLRSMAHAIASPAE
>CP022339.1|AXI24374.1|742198_743392_+|lipid-A-disaccharide-synthase
MVAWQPSLSLGRGIWFFIACAPSKKDLSMRYYIVAGEHSGDIHGADLIRQIKRIDPHADFWSCGGGAMAVVLGKPCQVAGTHMAYMGIDFLKKSYTLWKWLQFCQKGLIHYRPHVVILIDYSGFNMRIAAFAKRNGFPVHYYIPPKIWAHGPRRIEKIKRDVDQVWSILPFESAYYKDRGYPTIDYVGHPLVQRVADHRINPAFRADNKLDHRPIIALLPGSRLDEIRRILPLMVAQGTSTYQWVVAGLSHIPRHLYQACPPTVQVVYDQTYDLMAFARVGLIASGTASLEAALFNLLQVVVYKTHPLAYFFYKSIVTVPYISLVNLLVGQAVVPELIQYQYTRDKLHAALETLLSGSGVTRQKEAYQTIRQLLGARHAAVEAAKGIVASVKNQPTP
>CP022339.1|AXI24373.1|738458_741212_-|DNA-polymerase-I
METIIGEGNWLPAHKLNNKAYIDQMVSKKLFLLDGMSLIYRAYFALGKAVTLTRKGIQTGAILGFVNTLIEVLQTEKPTHLIVAFDDKAKTFRHELFPAYKSHRPAQPEAISIAIPYIQAILDGFGILSVTYSGYEADDLLGTLAKKAVGATTYIMSTDKDLAQVVTDGIYLYKPNSHGQKATILGKKEILAEWEIVRPEQVRDILALAGDPSDFIPGIPSIGKKTARKLIKTFDHLENLLAHSHTLKGQLKANLIQYADQGLLSKQLATICTDVPITLDWEACRYQGPNRTKLEPLFTLLEFKQLQQRLFGGATADVLQTTERVAATLMQPDCATLMQKLQHVAVWAFDIATTHIDPHRADLLGIAFAYQTGQIDYLAIPTDPAAAEPLLALLQPLFNRRDICKVGHNVKDALIVLQRYGLHIAPPLFDTMIAHALVAPDGRHTFAALSEQYLDYTPHTPSEREAVAPEAHKGYLSEQTALTLQIYPKLVQALTDEAMERLFYEVEMPLVPVLAAMELEGVAIDLTLLKQLGAEMERTTHDLKEKIYRLAETSFNIDSPKQLGKVLFEKLKLHEKAIQTKGGQYATGEAVLTKLTKVHPIVPIIMEYRAWQKLRSTYVETLPTMVHPIDQRLHAAYHQTVVTTGRLSATGPNLQNIPIKTTIGLRKAFIPHHEGDYLFSADYSQIELRIMAAYAQDATMIKAFQADKDIHQITARKLFKTEVVDQEMRRKAKIANFGIIYGISAFGLAERMGNVSRKEAAELIAAYFEEFPGIKNYMERAIAQAKQKGYATTLLGRKRWLPDIHARNSAVRSFAERNAINTPIQGSAAEMIKRAMIQIHHWLTSHKLKSKLIIQVHDELVFNVPAEEVAEIQHYIPLLMAQALPLENVPIKVNGHIGANWLEAHAPGVTTSDQNYP
>CP022339.1|AXI24372.1|737344_738181_-|Cytidylyltransferase-family
MFKTQNNFAQRFFSTVFFAPVITFAIFWSAWTYFFLFFYVAMLAMLEFYKLLKQANVTPMRGYGICLGLLLYTIAFSYYLQGNFLPILSYSCIPLTVLIYIVALYSRKPSNPFLDIAATFLGILYVAMPCSMLHYLAFFTGNYSNQLILGLLTIVWSQDTGAYLVGSTIGRTKLFKRISPQKTWEGFMGGALFAVMAGYGTAYFFNILPLWQWLAISVITIFTGTYGDLVASLLKRSVDVKNTSEMIPGHGGLLDRVDSLLLTIPTVVAFLKITLLCG
>CP022339.1|AXI24371.1|736444_737101_-|phosphatidylserine-decarboxylase-like-protein
MKIHKEGKEILLWTPVLLLLIYYGMHKKVVFSYHQSIGFAVVSGALYFWLIYFFRDPYRIIHTQDQYILGPADGKIINIQNVYEEEYLREERIKISIFMSPFNVHVNRFPMSGRIVFFKYHPGKYLVAFHPKASTHNERTSIVIENENGQQILFRQIAGFMARRIKFYFKEGEEVQQGEKCGFIKFGSRAEVYLPLDADIQVAVGDKIKGGITVLAKI
>CP022339.1|AXI24370.1|734767_736270_-|glutamate--tRNA-ligase
MTVHVRFAPSPTGALHIGSVRTILYNYLLARKTGGRFILRMEDTDQKRLVASAEAYILESLRWLGIVPDEGPEQGGPFGPYRQSERMALYRQYIQPLLDGGHAYYAFDTPEEIEAMRERLKAAKVDHPPYNAISREWMRNGLTMPAEQVQEWIAAGKPYVIRLKVPHKEPIRFKDGVRGWVKVDTATLDDKVLMKSDGWPTYHLASVVDDHLMQITHVIRGEEWLPSTPIHILLYRYLGWRDQMPEFIHLPLLLAPNGTGKLSKRHADQYGFPAFPISWNSPDLTVEKSFREAGYLPEALWNFLALLGWNPGTHQEIFTKQGLIEAFSLERLGKSGVKFDIAKAKWFNQQHIKKQGPTAWANYFITEATKENITCSQEEAMAICNLVKDRVTFPKDFWQEGRFFFFDPMGYDAELIQKKWKQQTKEEVLAFSQRLTDLPAWDAHTIKQLLQTVPGIRPLLRMALTGGVAGPDLTETIALLGRAKTYKRIKAFILNGYRDA
>CP022339.1|AXI24369.1|733866_734601_+|Ankyrin-repeats-containing-protein
MKDFLEKFSSFKPKVIFLVHARRHLLQDMWAPHTTINMAERNRYGDTPLHVAAFKGDWQQVKVLLQDKAVDVNASNNYGDTPIHYSVAQEQLEVLKVLLAPSTGVDVNAVDQDSYAPLHYASYIGHVKMIQVLLDHVNINVNIVDKHANTPLHYAAFSGHASALKALLSSKLIDVNSKNQHANTPLYYAAWQGHVEAVQALVATTGIELMVKNKYGHTPFDAANGDRHSECLELLYHAVHKKGH
>CP022339.1|AXI24379.1|753765_754092_+|thioredoxin
MDQNIIEITDAQFDEVISQHKLVLVDFWAPWCGPCLKLAPVLKEVAAMYIGKAYIAKLNISENSKTPSRYAISTIPTMLFFYQGQQVDRLVGNLPIAQIQEALDKYLP
>CP022339.1|AXI24380.1|754148_756011_+|ABC-transporter-transmembrane-region-protein
MEQLLASGLAVCLFAYKETSRSRTPFYTFPPMQPITKSLKTFILHFVSQYKWHFMAMACFRMCFVLDNLVVPYAFKVLVTRLTELASNRAGAWIKLGVPLMALLGVIVLIEVLFRLFDYMKIRTIPAFEAKIRIWIVHYLQGHSYQFFTEHFSGDLVKRVNDLTDGISQLMMIVISSFLPTFCTMLAGVFSFAYIQPTFGAVLMAWLVLHTATYLFYSKKCGHSVALHAEKGSRLSGSIVDGFTNILSIKLFARNNQATTHLLAPQAIEKRAHEKALKLIMQLHLIISGLSIGFMGVGMLAYMIYYWQLGKLSISEVTYIFYAGNNICNLVWVSVAEFPDFFEEMGYCKQALKLLQKKHAVLDVPGAAVLTCRSPAIAFKDVSFAYVPGKPIFENQNIAIAAGEKVGLVGLSGSGKTTFINLLLRFFDLNKGVITIDGQDISTVTQESLRAAIALIPQDTTLFHDNILENIRYGRKEATDEEVIAAAQKAKCHHFIMSFSEGYDTLVGERGSKLSGGQRQRIAIARAILKDAPILILDEATSALDAVTETEIQQSLATIMAGKTTIVIAHRLTVLAAMDRVLVFNNGNIIANGSHETLLKTNAIYANMCRLQLEGMHSLQ
>CP022339.1|AXI24381.1|756065_757838_+|putative-AAA-ATPase
MNKRKLPIGVSNFQELIQGDYLFCDKTAMLGEFLSKGDKVTLITRPRRWGKTLNISMLQHFFASEVNGIRTAGLFDDLEIGRLEDGRYIREHQGKYPVIMLSFKDVNSDSFQGAYNAVYELILKVYSAYPYLFSSDKINELQVEQLYVIRKRQANQQKLESSLELLSQCLYQHHGKKVYILIDEYDTPLNKAYGNKEYLDAMVAFMRNLFSAALKDNATLERGVLTGILRVSKDSMLSGLNNLKTYTLLDQGYSSHFGLSEVEVQDLFTQQNLSTCMHAVKSWYNGYRVGDLVMYNPWSIIYCLSEEGRCDLYWVNTGNNDLIKQLIFSSNDSLKAQFEQLMQGEALTVPVDKHLAFDLLDRDETALWSLLLFAGYLTFQTSNLSLDSDLYDCVVEIPNHEIHRLYNRFFKEWLSSKFVNRGAYNAFLEHLVVGSVALFVQELSFFLRQSVSCFDTQFSRKSEGFYHGFVLAMLASLRITHYVKSNRESGLGRYDLLLIPKKEGLKAILLEFKQVRKEEELESSARLALDQIQTQAYHSELVQYPHVKEVVECGIAFSGKSVLVAYSIYDLVRKQYGAIVLTNRYCQEAY
>CP022339.1|AXI24382.1|757853_759242_-|tRNA(Ile)-lysidine-synthetase
MIDRFLYLTGGNNLWLIGSAFNFTSMLATFLAFLQREALMRSTLVAVSGGVDSVVLAHLFKQANLPFAIAHCNFNLRGAEAAAETAFVQALAASYQVPFYRTQFETTAFARNHKVSIQMAARSLRYKFFHRLRQQHGWHQLATAHHWDDAVETILLNFIKGTGIKGLYGMQPIDGAIIRPLLFARKQEIIAYAKAAKLHWHEDSSNSSNYYQRNFMRNKVIPLLHQLNPSFEATLQATATKLRDIGHCFDDHLAQIKKEITTYKSGIHYLAIHAIIHQPWAATVAFELLRPYGFTFTQIKKLITGRMTSGKRIHATDYTLYVDRKEWLITKKKPLLRQQATIADATDAIAYGGYRLHCQLYASADYLLKKAATIAALDYHKVQFPLTVRPWQAGDWFYPLGMQGGKKVSDLLIDLKIPLAIKAQVCVVTSNEQIVWVIGHRIDERFKVEQTTKMVFEIAISI
>CP022339.1|AXI24383.1|759374_760583_+|pyruvate-dehydrogenase-complex-dihydrolipoamide-acetyltransferase
MAECIRMPKMSDTMQQGTISRWIKQVGDKVAAGDILAEVETDKATMELESYEDGTLLYIAEKSVAPVNAIIAIIGESGEDISALLAATVSTATVAGLVPSSDPVVACPVAPPVGDVLLPSDRLLASPLAKKLAQEKGYDLTQIQGSGSAGRVVKKDIVQFVPDHSGSAWMEGHSTQPAYQDLPVSAMRQTIAKVLTESKSHIPHFYLTLRIHMDPVMALRAELNHHPATKISINDLIIKATALALVQHPKVNAAWFTYKIRTYSHAHIGVAIAVEEGLLVPVVRFADQKPLVAISKEVKLFSKQAQDKKLAVKDTTGATFTISNLGMLGIESFSAIINPPAACILAVGAVQQLPIVQDHQVVPAHMLQVTLSCDHRVVDGAVGALFLSTLKSLLEKPLALLL
>CP022339.1|AXI24384.1|761142_761748_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MVSHYFPELSPAQITLFGRLGDIYTHWNGKLNLISRKDIAHLYFHHVLHSLAIAQVTTFVAHTKILDVGTGGGFPGIPLAILFPEVHFHLVDATAKKIEAVAAIVATLGLKNVSVDWARAETLTGQYDFIVGRGVTNLPLLYSWVKDKIAKERKNKLPNGILYLKGAPFEPLPLVVDLYPLQHYFTQPFFKEKYLVHAYSV
>CP022339.1|AXI24385.1|762188_763589_+|Helix-turn-helix-domain-protein
MITLLGTLFGVWYRFILICIYGCNHTHLKIQPHIKYKALLSKEQIIHKETFNKHAQSLKRPKIEPLTAVSDWGESSQDKRCKVSSSPCLPGAAPNKEQQNEQQSSDVLSKQKKMGNQLQKRLHFPNNSSGSTQNSKIKKQQEGEVNNDIRLYNPQSSLDVLERLPNTIYFKSLKLKINHDPNSPLAESVIEKLDAFHKLKLPYTFLSSVLQQCTDLYALDALLNKTLIKCASGGYAIESKLQHILNNNIKLSNLSSMVNGAGRAAPQTLEIVINKLMEERTLQKLQILKNLGITISNLSSMVNGSANAAPQTLARVINKLMEEQTLQKLQILKNLGITISNLSSMVNGSGNAAPQTLARVINKLMEEKTLEKLQILKNLGITISNLSSMVSGSGNAAPQTLARVINKLMEEKTLEKLQILKNLGITISNLSSMVSGTGKKAPQALETVINNLTEEGKLKKLQILKK
>CP022339.1|AXI24386.1|763899_765204_-|MiaB-like-tRNA-modifying-enzyme
MKKVAFHTLGCKLNFSETSAIGRLFTEAGFVTVTLAQRPHVFVLNTCSVTENADHKCAKMVREALRAAPAAFVIVIGCYAQLKPKEIAAIPGVDAVFGTHEKFKLLDWITDWHKKQPNESATIRVAPIQEKLTFSPAYSIGDRTRTFLKVQDGCSYACAFCTIPLARGPSRSATIEAVVEQATAIQDVKEIVLTGVNLGDFGIIDAQRQTNFFALIQALDGVENIERFRISSIEPNLLSKEIIDFVATSKRFVPHFHIPLQSGCDKILKLMRRRYLTGLYAERIAHIKAQMPTCCIGVDVLVGFPGETEVDFLTTYQFLNELAIAYIHVFPYSERANTKAAEMAGVVPQQERAKRARMLRILSEKKLNDFYRQHLGQTATVLFEYGGDDEVIEGFTENYIRVQLPYQAELANRLCKVRLKEINGEGMVVPELSS
>CP022339.1|AXI24387.1|767013_767901_-|hypothetical-protein
MEKVTPKVDLAFKKIFGVEENKDLLIALINATVAPEDQVADVTLLNPYNPKNFRTDRLSILDVKAVSETGKRFNIEIQITDEANYDKRALYYWAKLYTDQLKVSQTYATLNKAIGIHILNFTSITDSQKYHNVFHITEKESGMVYFSDLELHTIELVKFSNDPKETLDTLLQKIKSALDIWTAFLSRNDLLHRENLPGPLASNSLKKALHVLETLNFTEEERMAYEDRLKWLRIEAGTIEKVRNEGIQIGKEQGIQIGQEKEKIAIAAAMLQKGYPLEEVLLLTGLSHAQVEPLV
>CP022339.1|AXI24388.1|768043_770515_-|endopeptidase-La
MYFNKSLVMDGGLSSGWGEDGIGGMVELIVSDEKEQLSDTSSRIPLLALRNTVLFPNVVVPITVKERQAMLLIEAIHEKDGLLGIIAQRNPETFEGKPTDIYPIGTLAKIIKIINLPNGRTIALVHGKQKFQTIQLFTEALGLEATIQLLKDQPSKEDKKVLALMQSLKDVAIKILKFRSDGTSEAQAVLTNIKSLDFLTYFLASNLNTDIHYKQKLLELSNSTKRANLLLKHLLKELEISELKKEIQDKVHSDISQQQRDYYLRQQVKVLQDELGENDLSDEIDALREKGNKKQWTKEVADYFKKALEKAERMSPHSPDYSISINHAELLVDLPWESYTKDNLDLNRAKKIFDADHYGIEKVKERLLEFLAVLQLKKDMKGPILCLCGPPGVGKTSLGKSIAKAMGRKYARIALGGLNDEAEIRGHRKTYIGAMPGKIIYNLQKTGASNPVIVLDEVDKIDGMRGDPASALLEVLDPEQNNAFVDNFLEVPYNLSNVLFVATANSMDRIPAALQDRMEVIEVNGYLLEEKIEIAKKYLFPKQRKEHGLKATDLALQDDALATIITHYTRESGVRELSRQIANICRKTAKSIALGEAYTKKIKQPDVIALLGPEPFDQTPYHTTALPGVSVGLAWTASGGEILFIESVLSKGKGRVNLSGHLGEVMKESAMTALSYLKANDQYLDVAHGVFENYDLHIHVPSGAVPKDGPSAGITLFTSLASLYTQKKVKDRLAMTGEITLRGEVLPVGGIKEKILAAKRVGMQEIILSSKNKKDVQEIKEVYRKNLIFHYVDSVDQVYRLALQENKIANAKVWEGGERATGK

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Crispr_ID: CP022339_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022339_3

766897-766994

Orphan

Consensus_repeat	Method
CACTTTTTTATCAAGAAAAAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022339_3

>merge|CP022339|3|766897-766994|CRISPRCasFinder
CACTTTTTTATCAAGAAAAAAGTGGGATAAAGTTCATTATGAACCAGTAACGTCAACAGATATTTGGTTTCTGCTTACTTTTTTATCAAGAAAAAAGT

>CP022339|3|3|766897-766994|CRISPRCasFinder
CACTTTTTTATCAAGAAAAAAGT	GGGATAAAGTTCATTATGAACCAGTAACGTCAACAGATATTTGGTTTCTGCT
TACTTTTTTATCAAGAAAAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
CP022339.1\|AXI24393.1\|777442_779032_-\|alpha-subunit	unknown	unknown	gnl\|CDD\|236448
CP022339.1\|AXI24396.1\|780188_780416_-\|C-subunit	unknown	unknown	gnl\|CDD\|349414
CP022339.1\|AXI24383.1\|759374_760583_+\|pyruvate-dehydrogenase-complex-dihydrolipoamide-acetyltransferase	unknown	unknown	gnl\|CDD\|237001
CP022339.1\|AXI24386.1\|763899_765204_-\|MiaB-like-tRNA-modifying-enzyme	unknown	unknown	gnl\|CDD\|223694
CP022339.1\|AXI24377.1\|745327_748126_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|223256
CP022339.1\|AXI24381.1\|756065_757838_+\|putative-AAA-ATPase	unknown	unknown	gnl\|CDD\|313108
CP022339.1\|AXI24391.1\|775846_776257_+\|hypothetical-protein	unknown	unknown	unknown
CP022339.1\|AXI24379.1\|753765_754092_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
CP022339.1\|AXI24390.1\|772870_775648_+\|PD-(D/E)XK-nuclease-superfamily	unknown	unknown	gnl\|CDD\|378929
CP022339.1\|AXI24394.1\|779087_779627_-\|delta-subunit	unknown	unknown	gnl\|CDD\|365949
CP022339.1\|AXI24378.1\|750697_753340_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
CP022339.1\|AXI24389.1\|770744_772049_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|272878
CP022339.1\|AXI24388.1\|768043_770515_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
CP022339.1\|AXI24384.1\|761142_761748_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
CP022339.1\|AXI24387.1\|767013_767901_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372314
CP022339.1\|AXI24380.1\|754148_756011_+\|ABC-transporter-transmembrane-region-protein	unknown	unknown	gnl\|CDD\|224055
CP022339.1\|AXI24382.1\|757853_759242_-\|tRNA(Ile)-lysidine-synthetase	unknown	unknown	gnl\|CDD\|274129
CP022339.1\|AXI24395.1\|779647_780139_-\|B-subunit	unknown	unknown	gnl\|CDD\|184695
CP022339.1\|AXI24392.1\|776505_777381_-\|gamma-subunit	unknown	unknown	gnl\|CDD\|376304
CP022339.1\|AXI24385.1\|762188_763589_+\|Helix-turn-helix-domain-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022339.1\|AXI24393.1\|777442_779032_-\|alpha-subunit	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
CP022339.1\|AXI24396.1\|780188_780416_-\|C-subunit	gnl\|CDD\|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	9.97417e-14
CP022339.1\|AXI24383.1\|759374_760583_+\|pyruvate-dehydrogenase-complex-dihydrolipoamide-acetyltransferase	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	7.77861e-151
CP022339.1\|AXI24386.1\|763899_765204_-\|MiaB-like-tRNA-modifying-enzyme	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	7.55138e-126
CP022339.1\|AXI24377.1\|745327_748126_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
CP022339.1\|AXI24381.1\|756065_757838_+\|putative-AAA-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.21184e-60
CP022339.1\|AXI24379.1\|753765_754092_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.71532e-39
CP022339.1\|AXI24390.1\|772870_775648_+\|PD-(D/E)XK-nuclease-superfamily	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	8.07114e-28
CP022339.1\|AXI24394.1\|779087_779627_-\|delta-subunit	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	5.24674e-42
CP022339.1\|AXI24378.1\|750697_753340_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
CP022339.1\|AXI24389.1\|770744_772049_-\|RIP-metalloprotease-RseP	gnl\|CDD\|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.87795e-57
CP022339.1\|AXI24388.1\|768043_770515_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP022339.1\|AXI24384.1\|761142_761748_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.26769e-46
CP022339.1\|AXI24387.1\|767013_767901_-\|hypothetical-protein	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	9.71243e-63
CP022339.1\|AXI24380.1\|754148_756011_+\|ABC-transporter-transmembrane-region-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.15743e-125
CP022339.1\|AXI24382.1\|757853_759242_-\|tRNA(Ile)-lysidine-synthetase	gnl\|CDD\|274129	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). [Protein synthesis, tRNA and rRNA base modification].	1.2865e-61
CP022339.1\|AXI24395.1\|779647_780139_-\|B-subunit	gnl\|CDD\|184695	PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional.	7.37472e-34
CP022339.1\|AXI24392.1\|776505_777381_-\|gamma-subunit	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	5.56934e-88

>CP022339.1|AXI24386.1|763899_765204_-|MiaB-like-tRNA-modifying-enzyme
MKKVAFHTLGCKLNFSETSAIGRLFTEAGFVTVTLAQRPHVFVLNTCSVTENADHKCAKMVREALRAAPAAFVIVIGCYAQLKPKEIAAIPGVDAVFGTHEKFKLLDWITDWHKKQPNESATIRVAPIQEKLTFSPAYSIGDRTRTFLKVQDGCSYACAFCTIPLARGPSRSATIEAVVEQATAIQDVKEIVLTGVNLGDFGIIDAQRQTNFFALIQALDGVENIERFRISSIEPNLLSKEIIDFVATSKRFVPHFHIPLQSGCDKILKLMRRRYLTGLYAERIAHIKAQMPTCCIGVDVLVGFPGETEVDFLTTYQFLNELAIAYIHVFPYSERANTKAAEMAGVVPQQERAKRARMLRILSEKKLNDFYRQHLGQTATVLFEYGGDDEVIEGFTENYIRVQLPYQAELANRLCKVRLKEINGEGMVVPELSS
>CP022339.1|AXI24385.1|762188_763589_+|Helix-turn-helix-domain-protein
MITLLGTLFGVWYRFILICIYGCNHTHLKIQPHIKYKALLSKEQIIHKETFNKHAQSLKRPKIEPLTAVSDWGESSQDKRCKVSSSPCLPGAAPNKEQQNEQQSSDVLSKQKKMGNQLQKRLHFPNNSSGSTQNSKIKKQQEGEVNNDIRLYNPQSSLDVLERLPNTIYFKSLKLKINHDPNSPLAESVIEKLDAFHKLKLPYTFLSSVLQQCTDLYALDALLNKTLIKCASGGYAIESKLQHILNNNIKLSNLSSMVNGAGRAAPQTLEIVINKLMEERTLQKLQILKNLGITISNLSSMVNGSANAAPQTLARVINKLMEEQTLQKLQILKNLGITISNLSSMVNGSGNAAPQTLARVINKLMEEKTLEKLQILKNLGITISNLSSMVSGSGNAAPQTLARVINKLMEEKTLEKLQILKNLGITISNLSSMVSGTGKKAPQALETVINNLTEEGKLKKLQILKK
>CP022339.1|AXI24384.1|761142_761748_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MVSHYFPELSPAQITLFGRLGDIYTHWNGKLNLISRKDIAHLYFHHVLHSLAIAQVTTFVAHTKILDVGTGGGFPGIPLAILFPEVHFHLVDATAKKIEAVAAIVATLGLKNVSVDWARAETLTGQYDFIVGRGVTNLPLLYSWVKDKIAKERKNKLPNGILYLKGAPFEPLPLVVDLYPLQHYFTQPFFKEKYLVHAYSV
>CP022339.1|AXI24383.1|759374_760583_+|pyruvate-dehydrogenase-complex-dihydrolipoamide-acetyltransferase
MAECIRMPKMSDTMQQGTISRWIKQVGDKVAAGDILAEVETDKATMELESYEDGTLLYIAEKSVAPVNAIIAIIGESGEDISALLAATVSTATVAGLVPSSDPVVACPVAPPVGDVLLPSDRLLASPLAKKLAQEKGYDLTQIQGSGSAGRVVKKDIVQFVPDHSGSAWMEGHSTQPAYQDLPVSAMRQTIAKVLTESKSHIPHFYLTLRIHMDPVMALRAELNHHPATKISINDLIIKATALALVQHPKVNAAWFTYKIRTYSHAHIGVAIAVEEGLLVPVVRFADQKPLVAISKEVKLFSKQAQDKKLAVKDTTGATFTISNLGMLGIESFSAIINPPAACILAVGAVQQLPIVQDHQVVPAHMLQVTLSCDHRVVDGAVGALFLSTLKSLLEKPLALLL
>CP022339.1|AXI24382.1|757853_759242_-|tRNA(Ile)-lysidine-synthetase
MIDRFLYLTGGNNLWLIGSAFNFTSMLATFLAFLQREALMRSTLVAVSGGVDSVVLAHLFKQANLPFAIAHCNFNLRGAEAAAETAFVQALAASYQVPFYRTQFETTAFARNHKVSIQMAARSLRYKFFHRLRQQHGWHQLATAHHWDDAVETILLNFIKGTGIKGLYGMQPIDGAIIRPLLFARKQEIIAYAKAAKLHWHEDSSNSSNYYQRNFMRNKVIPLLHQLNPSFEATLQATATKLRDIGHCFDDHLAQIKKEITTYKSGIHYLAIHAIIHQPWAATVAFELLRPYGFTFTQIKKLITGRMTSGKRIHATDYTLYVDRKEWLITKKKPLLRQQATIADATDAIAYGGYRLHCQLYASADYLLKKAATIAALDYHKVQFPLTVRPWQAGDWFYPLGMQGGKKVSDLLIDLKIPLAIKAQVCVVTSNEQIVWVIGHRIDERFKVEQTTKMVFEIAISI
>CP022339.1|AXI24381.1|756065_757838_+|putative-AAA-ATPase
MNKRKLPIGVSNFQELIQGDYLFCDKTAMLGEFLSKGDKVTLITRPRRWGKTLNISMLQHFFASEVNGIRTAGLFDDLEIGRLEDGRYIREHQGKYPVIMLSFKDVNSDSFQGAYNAVYELILKVYSAYPYLFSSDKINELQVEQLYVIRKRQANQQKLESSLELLSQCLYQHHGKKVYILIDEYDTPLNKAYGNKEYLDAMVAFMRNLFSAALKDNATLERGVLTGILRVSKDSMLSGLNNLKTYTLLDQGYSSHFGLSEVEVQDLFTQQNLSTCMHAVKSWYNGYRVGDLVMYNPWSIIYCLSEEGRCDLYWVNTGNNDLIKQLIFSSNDSLKAQFEQLMQGEALTVPVDKHLAFDLLDRDETALWSLLLFAGYLTFQTSNLSLDSDLYDCVVEIPNHEIHRLYNRFFKEWLSSKFVNRGAYNAFLEHLVVGSVALFVQELSFFLRQSVSCFDTQFSRKSEGFYHGFVLAMLASLRITHYVKSNRESGLGRYDLLLIPKKEGLKAILLEFKQVRKEEELESSARLALDQIQTQAYHSELVQYPHVKEVVECGIAFSGKSVLVAYSIYDLVRKQYGAIVLTNRYCQEAY
>CP022339.1|AXI24380.1|754148_756011_+|ABC-transporter-transmembrane-region-protein
MEQLLASGLAVCLFAYKETSRSRTPFYTFPPMQPITKSLKTFILHFVSQYKWHFMAMACFRMCFVLDNLVVPYAFKVLVTRLTELASNRAGAWIKLGVPLMALLGVIVLIEVLFRLFDYMKIRTIPAFEAKIRIWIVHYLQGHSYQFFTEHFSGDLVKRVNDLTDGISQLMMIVISSFLPTFCTMLAGVFSFAYIQPTFGAVLMAWLVLHTATYLFYSKKCGHSVALHAEKGSRLSGSIVDGFTNILSIKLFARNNQATTHLLAPQAIEKRAHEKALKLIMQLHLIISGLSIGFMGVGMLAYMIYYWQLGKLSISEVTYIFYAGNNICNLVWVSVAEFPDFFEEMGYCKQALKLLQKKHAVLDVPGAAVLTCRSPAIAFKDVSFAYVPGKPIFENQNIAIAAGEKVGLVGLSGSGKTTFINLLLRFFDLNKGVITIDGQDISTVTQESLRAAIALIPQDTTLFHDNILENIRYGRKEATDEEVIAAAQKAKCHHFIMSFSEGYDTLVGERGSKLSGGQRQRIAIARAILKDAPILILDEATSALDAVTETEIQQSLATIMAGKTTIVIAHRLTVLAAMDRVLVFNNGNIIANGSHETLLKTNAIYANMCRLQLEGMHSLQ
>CP022339.1|AXI24379.1|753765_754092_+|thioredoxin
MDQNIIEITDAQFDEVISQHKLVLVDFWAPWCGPCLKLAPVLKEVAAMYIGKAYIAKLNISENSKTPSRYAISTIPTMLFFYQGQQVDRLVGNLPIAQIQEALDKYLP
>CP022339.1|AXI24378.1|750697_753340_+|alanine--tRNA-ligase
MQSKFIREKFLEFFIQKGHQHQPAVPIIGKDDPSLLFVNAGMNPFKEVILGNQPITAPRVVTVQPCLRVSGKHNDLEEVGVDTYHHTLFEMLGNWSFGDYFKEAAIAWAWELLTEVYQLPKAEIYVTIFAGDAQDGLPKDNEAAAIWAEYLPAERILACGKEANFWEMGEQGPCGPCSEIHIDIRPEAERKTLPAAQLVNQGHPQVIEIWNLVFMEYNRQASGRLVDLPHKHIDTGMGFERLAMVLQGKTSTYDTDVFTPLIAKIQRLAGKPYSDTMAVAMRVIADHLRAVAFAIADGQAPAPTKAAYVIRRILRRAIRYGYSHLGIQTPFIYQLVPVLVAQMEGIYPNLSAQQDYIAQCIQSEETAFLKTLATGLQLFNQLDARNIHQGSIEGRVAFTLYDTYGFPLDLTLLLAKEKGLTVDVAGFQQALQEQKKRSQKDAASSQGDWQVIQTGVQPRFVGYDALAITTSIVQWRAITNKQGVAYQLVLAATPFYPEGGGQVADVGVIISGQQSISVLDVQKEHGLILHTVDQLPTQLAQPQLGQPRLEQPIEARVDPVQRTLVAGNHTATHLLQAALRAVVGDHVVQKGSLVTPALLRFDFAHPTKLSDAQIEAVEAMVNEKIRANIACIEQRAVPLETAKAMGAQALFGEKYGAEVRVIAFDPAYSIELCGGTHLPCTGSIGFFKIIRETAVASGIRRIEALTACQAHQFVTQQAATLNAIAALLKHPKALVQAVEKLLCEKKQLQKQLAVYQAQAIEQIQLSFEQVGGVYLLLQVVQLPHPDALQQLALRYRNQYKKSIILLAATFDQQAHLMMVVSEALAPSYNAHALMQSIASLIAGKGGGQPLLATARGDNPAGIPDALQAIRRLLVSADVIE
>CP022339.1|AXI24377.1|745327_748126_+|excinuclease-ABC-subunit-A
MRPHLADLDTLSPKDFIIIRGARMHNLKNISVAIPRNQLVVVTGLSGSGKSSLILDTLFVEAQRMYVESVSAYARQFLGKLAKPLVDAIQGLSPAIAIQQNVANKNPRSTVGTLTELCDYLYLLYARIGTTYSPISGQKVKKDSVSDVVDYIQQQADGTKVLILYPIAVADQAALVQKLKVEQGKGFTRVMQGDHLFYIEALLAGKERLSLDQPIYGLVDRIVVNKADQDNQYRIADSVQVAFFEGMGHAVVALVGLGQQAFSDRFELDGLTFALPTVSFFSFNTPHGACKACSGLGQITGIDPHKVIPNPALSLVEGAIAPWNGATMSKWLAPLLAAHEALRLPIYAPYSSLTPDQQTLVWQGKGDFLGLNRFFDFCATQTHKIQYSVLLSRYRGKTPCTVCKGSRVRADADCVKIAHHSIIDLLLMPLHDLIAFFDRLSLTPREATMVQRVVVEIKNRLRYLAQVGLAYLTLSRPMATLSGGEQQRIKLATALGSPLFGAIYILDEPTIGLHPRDTDRLVQLLVDLKTQGNTVIVVEHEALVMRAADTIMEIGPEAGAHGGTLVFQGTFPALMQATTHTADYLNGTAAIPLPPRRRPWRKRLLIQEVNLHNLQNVTVAIPLNVCTVVTGVSGSGKSTLIKEVLYPALAARLHQPTSLSGPSTPLSGDWASLQAVELIHHHPLGKSSRSNPATYLAIYDAIRDLFAQTALARSRHYQAGHFSFNSEKGQCPTCRGEGHQKIEMQFMADIYLSCTSCKGSRFKSEIADITYSGKNVAQVLSMTVAEALPFFADHPAIVHKLKVLQKVGLGYIQLGQSSSSLSGGEAQRLKLAYYLEKELADQPILFIFDEPTTGLHMHDVAQLVKAFHALIHQGHTVVVIEHHLDIIKSADWLIDLGPDGGQQGGQVVFTGTPETLIQQSQNHTAHYLKQIM
>CP022339.1|AXI24387.1|767013_767901_-|hypothetical-protein
MEKVTPKVDLAFKKIFGVEENKDLLIALINATVAPEDQVADVTLLNPYNPKNFRTDRLSILDVKAVSETGKRFNIEIQITDEANYDKRALYYWAKLYTDQLKVSQTYATLNKAIGIHILNFTSITDSQKYHNVFHITEKESGMVYFSDLELHTIELVKFSNDPKETLDTLLQKIKSALDIWTAFLSRNDLLHRENLPGPLASNSLKKALHVLETLNFTEEERMAYEDRLKWLRIEAGTIEKVRNEGIQIGKEQGIQIGQEKEKIAIAAAMLQKGYPLEEVLLLTGLSHAQVEPLV
>CP022339.1|AXI24388.1|768043_770515_-|endopeptidase-La
MYFNKSLVMDGGLSSGWGEDGIGGMVELIVSDEKEQLSDTSSRIPLLALRNTVLFPNVVVPITVKERQAMLLIEAIHEKDGLLGIIAQRNPETFEGKPTDIYPIGTLAKIIKIINLPNGRTIALVHGKQKFQTIQLFTEALGLEATIQLLKDQPSKEDKKVLALMQSLKDVAIKILKFRSDGTSEAQAVLTNIKSLDFLTYFLASNLNTDIHYKQKLLELSNSTKRANLLLKHLLKELEISELKKEIQDKVHSDISQQQRDYYLRQQVKVLQDELGENDLSDEIDALREKGNKKQWTKEVADYFKKALEKAERMSPHSPDYSISINHAELLVDLPWESYTKDNLDLNRAKKIFDADHYGIEKVKERLLEFLAVLQLKKDMKGPILCLCGPPGVGKTSLGKSIAKAMGRKYARIALGGLNDEAEIRGHRKTYIGAMPGKIIYNLQKTGASNPVIVLDEVDKIDGMRGDPASALLEVLDPEQNNAFVDNFLEVPYNLSNVLFVATANSMDRIPAALQDRMEVIEVNGYLLEEKIEIAKKYLFPKQRKEHGLKATDLALQDDALATIITHYTRESGVRELSRQIANICRKTAKSIALGEAYTKKIKQPDVIALLGPEPFDQTPYHTTALPGVSVGLAWTASGGEILFIESVLSKGKGRVNLSGHLGEVMKESAMTALSYLKANDQYLDVAHGVFENYDLHIHVPSGAVPKDGPSAGITLFTSLASLYTQKKVKDRLAMTGEITLRGEVLPVGGIKEKILAAKRVGMQEIILSSKNKKDVQEIKEVYRKNLIFHYVDSVDQVYRLALQENKIANAKVWEGGERATGK
>CP022339.1|AXI24389.1|770744_772049_-|RIP-metalloprotease-RseP
MAFLIKTIQFLAALFIMVGIHELGHLLFAKLFKMRVKSYMIGFPPKLFKFKWGETEYSLGSIPLGGAVQIAGMVDEALDMDHLQHNPQPWEFRSKPAWQRLITILGGIAFNLASGILIWIGVTYKMGYTYLPKDEVNKYGIMPNSIGAEMGFKRGDRIIQINGKDFEDFNDLLSPNLLLRSHNSYTIHRAGKLCTLSISEKSIENVSALQKGLWIRPIYPCVIGTVRPDSHAAQAGFIAGDQILTLAGQPTLDIDELHQVVQASIGRSVEATYLRAGIEMATQVEVGPQGLGIQLAPLKYKQLHYSLLASIPVGLSKAFALIQVQALTIWKLITGKISIKKSLSGPIGIAQNFGDEFIGSRFWTLIAYLSIAMSVVNLLPIPALDGGHALCIIYEALSGRKPSARFLQGIQKLGMIFILLLTIYVFSNDIRKLL
>CP022339.1|AXI24390.1|772870_775648_+|PD-(D/E)XK-nuclease-superfamily
MSACICYWYLISIIIFVKIYKDAMKTITHQPFLEEVVGYLNRSHRPNTALVIVPNQLSMEYCGFVCHKAKWQAGCTTLHQLMRSHSKLTLLSTWALLRRLYASVGPISQEPFEQFARWGRILLEDFNAIDSYLIDGVALFESLYKQRTREARCHQGPLDAFKKVRSLPLWKEKESMGFWEQLPLLYASFREGLIREGKGYEGLCYSMAQPLPEIRNQALVFVGFNRLMPVEAEFIKQCQAMASTAFFWDTDPHYLDNLVNIAGHYLRQHREKKWFQSGFSPATYFNDPGKKVFLTEVPTSVAQVQAVVAALAEKTDEGKPRFLPSQTAIVVSGSDLLIPLFDQLADRSIPLHCRVSYPFHATVIYCIVERLVQLWESFVAGQEAIYTHMAAVWVLWDPFAAETAQGAAMRPPLDGRMLRSLFDPWLHQEGLLAYLQAGLTYMYGHFIETDRLFWVVNKTALRHLLSYIEGLIAEMADCSIAFFLHGLKSSNMPFHIDHPATGLYIIDVAESYNLDFENVFFLGMNEGCFPKRTHQDSFLPYDLCYSFGLPLADKVAEQQTAYGFYRLLQRAQNIYGYYVQKNHLDAAGEISRLWTQLTFDSQLNIITAHHSLQLLDRPIAPIVIQKSDAVMQLLNRFLAASSRLTPAALIAYLSCPLQFYFRYVLQLKQKAKGDSEMVQLGTLFHDVMARLYQPFVDMQVDTSRVMQLKGQVHSKIEEAMAASHTPIGAPLLLRALLEKLVTAMLDLDGAEAPFTLLGVEVAMQQSMALDGERKVWLGGVVDRIDRRHHVIRMIDYKTGLSNGKVGPIASLFDPTKIQKNKAIFQLFFYAWLFHSLHGADLHQSIMPYLIHIRELFLKDYTPGIFQSDHGTHYHRIEDMQAYLQPFETGLKALLLELFNPVLPFVQTADLTICAYCPYVRICQRD
>CP022339.1|AXI24391.1|775846_776257_+|hypothetical-protein
MLFDFIETGRGIQILYQYAKQEILESDFFDLTAEGYQQLSEIEQTQKWYILNAEKLNQNYIEEGAYFIVNEKEKNILLRAVQFIHFTSEKLATNASFLERLLYSKHCMPDCFFSTSTKNENENCRIIQLGQSDDKN
>CP022339.1|AXI24392.1|776505_777381_-|gamma-subunit
MAHLKEVVDRIHLIAFTQQITKAMKMVSASKLHKIQQVLLPLKEYTTEYSLLLHQALQNRNAPPALTKPSSGQRLLVVVVAAHRGLCGAFNKNVLKAAYEQITQQTPATTVEVLVIGKKADQFFKKYDFPVIDDYVALLEKPLDQASGTLTTYCIDVFQKDRYTEVILVYTAFKNSAKQEVAIVPFLPFLPQMVAQEHPSPTQPLYYIYEPSQQLLIEALIPKILQHKIMHMLVESSASEYAARMATMSQATDNADELLKVLRISYNRTRQALITHSLAEITSGAEALAES
>CP022339.1|AXI24393.1|777442_779032_-|alpha-subunit
MEQMAQINTDAVTAILKTQLSNFKTEAELAETGIVIQSGDGVVRIYGLINVQAGELLSFANGCKGLALNLEEHMVGAVILGEANAIKEGDVVTRTKQVASIQVGEGLLGRVVDTLGNPIDGKGPIVGETFEMPLERNGPGVIYRQPVDTPLQTGLKAIDAMIPIGKGQRELIIGDRQSGKTSIALDTILNQRRLFEQGKPVYCIYVAIGQKASAIAGVVETLTRQGAMAYTTIVATPSSASAPMQSFAPFAGAAIGEFFRDTGRDALIIYDDLSKQAVAYRELSLLLRRPPGREAFPGDIFYLHARLLERSARIIAGDDMAASMNDIPPALKGKIKGGGSLTALPIIETQMGDVSAYIPTNVISITDGQIFLEMNLFNAGIKPAINVGISVSRIGGAAQIKAIKKVAATLKLDQAQFAELEAFSKFSSDLEATTKKAIERGRKNQELLKQNLHAPMAVEEQAAILYIAMNGYLDDVPLAQLKIFERQFLELLRAQHPTMLEAIAKGEWGEPIMEVLVAVAKPLLIRYSA
>CP022339.1|AXI24394.1|779087_779627_-|delta-subunit
MFKNKKIAARYASVFLAQAIQSGIVKRIHSDLSFLHHQFRDHPILDNVLNNPTIPHAEKRKLLQTIDNAVLSPMVWRFLEILIDQHQIGLLKEILTAFSVAYHHHMGIQSALVTTAVALPEALVKKLIEEVKRWVPCKEVRMKKQIDPSIIGGYILQIGELKLDKSIKHSLQALQSVLR
>CP022339.1|AXI24395.1|779647_780139_-|B-subunit
MTLITPDFGIIFWQTTTFLVVLLVLSKFAWRPILEVVKAREDAVAHAIDTITEAQTCMKQVEDDRARLIGEAELERARIIDAALATQREIIDQAHQEGLAVKEQLVTQAKLEITREEARALETVKAHVGSLVVQVAEKLLVKELSQDASQWELIEQFTGKRST
>CP022339.1|AXI24396.1|780188_780416_-|C-subunit
MLDISLSYAGASIGAGIIALGAGIGVGKIGSAAMEAMSRQPEMSAKIQTAMIIACALVEGVALFGVLVCLLIATK

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Crispr_ID: CP022339_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022339_4

1064874-1064981

Orphan

Consensus_repeat	Method
TACAAATGTGATATATGTGGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022339_4

>merge|CP022339|4|1064874-1064981|CRISPRCasFinder
TACAAATGTGATATATGTGGTAAAGGTTTTGGCTATAAAACTTCTTTAGATGCACACCATAACAAACATACAAGATTAATACAGTACAAATGTGATATATGTGGTAAA

>CP022339|4|4|1064874-1064981|CRISPRCasFinder
TACAAATGTGATATATGTGGTAAA	GGTTTTGGCTATAAAACTTCTTTAGATGCACACCATAACAAACATACAAGATTAATACAG
TACAAATGTGATATATGTGGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP022339.1\|AXI24619.1\|1075711_1076515_+\|membrane-protein	unknown	unknown	unknown
CP022339.1\|AXI24609.1\|1059875_1061108_-\|MacB-like-periplasmic-core-domain	unknown	unknown	gnl\|CDD\|226957
CP022339.1\|AXI24620.1\|1076598_1077261_+\|hypothetical-protein	unknown	unknown	unknown
CP022339.1\|AXI24602.1\|1043373_1043751_+\|ribosomal-protein-bL12	unknown	unknown	gnl\|CDD\|234671
CP022339.1\|AXI24603.1\|1043766_1047642_+\|beta-subunit	unknown	unknown	gnl\|CDD\|234749
CP022339.1\|AXI24607.1\|1054241_1055852_+\|ATP-binding-protein-CcmA	unknown	unknown	gnl\|CDD\|223562
CP022339.1\|AXI24617.1\|1072964_1073288_+\|hypothetical-protein	unknown	unknown	unknown
CP022339.1\|AXI24606.1\|1053154_1054018_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
CP022339.1\|AXI24614.1\|1068832_1069135_-\|FeS-assembly-SUF-system-protein	unknown	unknown	gnl\|CDD\|131990
CP022339.1\|AXI24611.1\|1063004_1064108_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
CP022339.1\|AXI24612.1\|1065145_1066258_+\|tRNA-threonylcarbamoyl-adenosine-modification-protein-TsaD	unknown	unknown	gnl\|CDD\|236585
CP022339.1\|AXI24610.1\|1061107_1062580_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236327
CP022339.1\|AXI24616.1\|1072701_1072941_+\|hypothetical-protein	unknown	unknown	unknown
CP022339.1\|AXI24615.1\|1070521_1071070_+\|PD-(D/E)XK-nuclease-superfamily	unknown	unknown	gnl\|CDD\|369649
CP022339.1\|AXI24608.1\|1056868_1058371_+\|Ankyrin-repeats-containing-protein	unknown	unknown	gnl\|CDD\|293786
CP022339.1\|AXI24605.1\|1052298_1052952_+\|Transposase-IS116/IS110/IS902-family	unknown	unknown	gnl\|CDD\|376773
CP022339.1\|AXI24604.1\|1047687_1051983_+\|beta'-subunit	unknown	unknown	gnl\|CDD\|234794
CP022339.1\|AXI24613.1\|1066372_1068775_-\|Transposase-Mutator-family	unknown	unknown	gnl\|CDD\|224588
CP022339.1\|AXI24618.1\|1073265_1075719_+\|AAA-like-domain-protein	unknown	unknown	gnl\|CDD\|274279
CP022339.1\|AXI24621.1\|1077247_1078048_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022339.1\|AXI24609.1\|1059875_1061108_-\|MacB-like-periplasmic-core-domain	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	9.66417e-30
CP022339.1\|AXI24602.1\|1043373_1043751_+\|ribosomal-protein-bL12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	1.17274e-33
CP022339.1\|AXI24603.1\|1043766_1047642_+\|beta-subunit	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
CP022339.1\|AXI24607.1\|1054241_1055852_+\|ATP-binding-protein-CcmA	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
CP022339.1\|AXI24618.1\|1073265_1075719_+\|AAA-like-domain-protein	gnl\|CDD\|274279	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.	1.46845e-40
CP022339.1\|AXI24606.1\|1053154_1054018_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
CP022339.1\|AXI24614.1\|1068832_1069135_-\|FeS-assembly-SUF-system-protein	gnl\|CDD\|131990	TIGR02945, SUF_assoc, FeS assembly SUF system protein. Members of this family belong to the broader pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.61853e-45
CP022339.1\|AXI24611.1\|1063004_1064108_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	3.99992e-17
CP022339.1\|AXI24612.1\|1065145_1066258_+\|tRNA-threonylcarbamoyl-adenosine-modification-protein-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	1.28602e-175
CP022339.1\|AXI24610.1\|1061107_1062580_-\|proline--tRNA-ligase	gnl\|CDD\|236327	PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.	0
CP022339.1\|AXI24615.1\|1070521_1071070_+\|PD-(D/E)XK-nuclease-superfamily	gnl\|CDD\|369649	pfam08011, PDDEXK_9, PD-(D/E)XK nuclease superfamily. This family contains many hypothetical bacterial proteins. It has been identified as a member of the PD-(D/E)XK nuclease superfamily through transitive meta profile searches. DUF1703 has the predicted secondary structure pattern of the restriction endonuclease-like fold core and contains an additional beta-strand at the C-terminus.	9.07018e-11
CP022339.1\|AXI24608.1\|1056868_1058371_+\|Ankyrin-repeats-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.25735e-20
CP022339.1\|AXI24605.1\|1052298_1052952_+\|Transposase-IS116/IS110/IS902-family	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.84405e-24
CP022339.1\|AXI24604.1\|1047687_1051983_+\|beta'-subunit	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
CP022339.1\|AXI24613.1\|1066372_1068775_-\|Transposase-Mutator-family	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	3.24659e-137

>CP022339.1|AXI24611.1|1063004_1064108_-|signal-peptidase-I
MKTSFSAKKQDGMGSAIGAIRDWVGSVFFAAMAAALIRWMVIGLYVIPSGSMEPTLLTGDFVLVSKIHYGARTPATPLQLPITHQTIPGTKIPSYLDWIQLPTYRLPGLSKVKRNDIIVFNTPVGHEPPDLRAYWIKRCIALPGDLVHIRHKQLYVNEEPADSADRTQYCYFMKTKRILTAAFFEKNDIKNPIRTTIPGREGYTIYTTPEKVKQLTTILPTCIQSVNPVEEEGDLRSSVYPFSPTLGWTKDNFGPLRVPNKGMVLQMDAQNILLYGPTIQRFEGKKNIRFTKTACWIDGQEVAHYTFCKNYYFAMGDNRDQSGDSRFIGFIPEDHIVGKAVMVLLSSDRNQSFFSGIRWNRLLHTVN
>CP022339.1|AXI24610.1|1061107_1062580_-|proline--tRNA-ligase
MTSVPTRASDFSAWYNALVVRAGLAENASVRGCMVIKPYGYAIWERLQTIFDRAFKETGHVNGYFPLLIPKSYLSKEASHVAGFAKECAVVTHYRLKMAEDGQGVVVDPAAKLEEELIVRPTSEAVIWSTYKNWIQSYRDLPILLNQWCNVVRWEMRTRLFLRTTEFLWQEGHTAHATQEEAEKEALQMLHLYECIIRDYMAIPLIKGIKTENERFAGAETTYTIEALMQDGKALQAGTAHYLGQRFAKAFEVTFTNQAGIRDYVWGTSWGITTRLMGALIMIHSDDNGLVLPPKIAPIQVVMVPIYKTEHERAAVVAQLAALQKQLNSQGVRVKLDERDTRKPGYKFAEYEEKGVPIRVALGPNDLQNHTVELARRDTKEKCTIPIGNLTQQVTDWLEMIQRHIYERALSLQQKRTLLVDDYTTFKKLMATQGGFLLAHWDGTTETEAKIKAETKATIRCIPLDEDTTAGYCIYSGKPSQRRVVFAQAY
>CP022339.1|AXI24609.1|1059875_1061108_-|MacB-like-periplasmic-core-domain
MMCSFQTISWIAFMANRVRKRNRGAFSASIDTIVTLSITIGTATILIAAMVMLGFQKAIKKKLTAFTGDFEITKYSGVQHPHAPTSVDAAQVCRLMADLPDAIESVIPFIQKPMLIHTRAGVTGVLCKGIDPTTLADYLIAGRLPDLTQSKHQNEWCISHHLAQKHALKLGDSVVVHTVDPNARYRKLKVVGLYRTYLSAIDEHLAFCDRRLMQRLNNWASETVNGYAIFLKDHVSPTKALRTAILGRIDDDLRLISTQQKYSSLYDWLAIIQKNTTIFIVFILLVAGCTMVATVMIQLMERSYMVGVLKVLGAYDGQVDAILLYNSLRTLCLGMIYGNIIGIGSGFLQAHYKYVTLEPALYYMRYVPVYIHWTVLVIPNLLILGSLSAALYLAIQLLRQKKLIEALQEG
>CP022339.1|AXI24608.1|1056868_1058371_+|Ankyrin-repeats-containing-protein
MFCKSNLYRFKQLVHMIGLSGCSLLSFGCNPLNTIVPWDRPSLKTYCLAKFNPRYGYYQLQSDYALSQFIESFSVPLVDGQHAGEALKQYRNVEAFFRKSPFLVMRMHYPKIVEQLNSDELKYFYVIQSDNDISKKIKTGTLDIDWIKREIKRMQATKIRHIPSIVPDLCTIMVNKYARQCLFQLDYKRLEDEPWLSLFESSIFANPWGALSTVGDIHLVESVLNHCMGQLDWYRSRIEKYSSEGNSGSYSRAKDDYDAYAKQLGAALIRFLCMAMNNYNHRGQIIKLVLEQVGYLDDMNRHLDIYAAQSWSMIALDEVLAKGQYGNDPAYLSLVSLLLRRVDVNMQDANGKTALHKVSAMPYFVRSSNTSPYGPGKGRMRFLLRYGANPNIQDFDGCTPLHILVKTADLSESCIELLLRHKCNPNIQDNNGDTALHLAVSCDRPSSLAYLCRIPARVDIKNNKGETPLDVAKSRGVRKLIELLNTYIAYLSQIQLVVAR
>CP022339.1|AXI24607.1|1054241_1055852_+|ATP-binding-protein-CcmA
MIVINDLTYHLGKRTLYDAASLHIKPKDKIGLIGPNGAGKSTLLKIITGDLTPDSGKVTRRKECSIGFLNQDLLSYQSQDSIRNVAMEAFREALATQKKIEALCQQMEVNYSDDLLTQLSNLQETFERIGGYDMQSRTEAMLEGMGFTTKDLDRSLSEFSGGWRMRVMFAKLLLQQPALLILDEPTNHLDLVSIKWVEAYLKNYDSAFIVVSHDRSFLDGTTTKIVEITDKKFTIYVGNYSDYEIQKSERSVLQENAYANQQKQLKHAQEFIDRFRAKASKAKLVQSRIKALDKVEKIEAPSAQRKTIKFQFSIKQNPSKIVAVIEKINKSYGPVSILKDATVAINRGDKIALIGANGRGKTTLLRIIAEHEAAEQQQRSLGNNVEMAFYAQHQLEALNLQHTIIEALRAHSSSSGAERTEQALRTIAGMFLFTKDDVFKKIEVLSGGEKARVALATVLLSQANFLLLDEPTNHLDIQSIDTLGQALQQYEGTCLFVSHDRNFIQQVANKIWYIENKKVKVFPGSYEEFKEVVNLS
>CP022339.1|AXI24606.1|1053154_1054018_-|lipoyl-synthase
MKETTLPMPPPQRPDWLRVKLPIGKHYRAVRAIVDQHKLHTICTSGNCPNMGECWGAGTATFMILGNICTRSCGFCAVATGRPTAYDKDEPKRVAQAIHLMGVKHAVITSVNRDELKDCGAEIWYQTVKEIKALNPTTTIETLIPDVKGIWWALERMISAGQEVVSHNMETVERLYKKVRPQAKYARSLEQLKRIKAYGKRSKSGIMLGLGETDAEVYQVMDDLRAHDLDVLTLGQYLQPTKQHLEVAAFVHPDKFAHFKEEGLKRGFAYVESGPLVRSSYHAERHV
>CP022339.1|AXI24605.1|1052298_1052952_+|Transposase-IS116/IS110/IS902-family
MEPKSYQMPVASIQALKQQKTLLAQLKKQLTMSYNLLESFSVLPKTDAVTLKVINQNIASLEEQIAFLEQEMLTITQERCKELYTQISSIQGIGDRTTMELIVGTGGGHHFESAKQFSKYIGLAPTYEHSGSSVRKKGHINRHGNPGLRSLLYIASWSAIRFNKSCKDFYERLKARGKPSKVALIAVANKLIRQVFAIMRDNTFYVDGHVSKLKVSP
>CP022339.1|AXI24604.1|1047687_1051983_+|beta'-subunit
MKFKRNRAQSTQFSGIIASLSSPEVILSRSSGEVTLPETINYRTHKPETKGLFCERIFGPVKDWECHCGKYKGIRYKGIVCDRCGVEITEKKQRRQRVGHIELVVPVTHIWYFRVLPSKISYLLGIPTKKVEQIVYYERYVVIQPGIKKDEGVAAMDLLSEDEYLNILDQLPPENQLLSNSDPNKFIALIGSEAIEAVLKGLDLEKLSVDLREQLLTDASQQRRIEVVKRLKIVEGFRDVHKKVENRPEWMVMRILPVIPPELRPLFSLGGGKFATSDLNDLYRRVIIRNNRLKRLLDIKAPQIIIRNEMRMLQEAVDSLFDNSRKVNSVASEGIRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRLHECGLPKEMAVELFMPFIIRRLIERGVAETVKVAKRLIEEKDPVIWDVLENVLKGHPILLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLGQEAIAEASLLMLASYNVLNPSNGIPITIPSRDMILGLHYLTKGRRSRSSDVVLGEGMSFYAPEEVLMALAHEKVSKHAYIKLRLSIAHADGSVAYRFIETTVGRVLFNEYCPAGMAFVNETLNVRNMQRIVTDMYSQFGTVVTVAFLDNIKALGFNTAFKAGMTIGLDDVKIPANKNELIAQATAEVESIWGNYMLGLITDNERYNQVIDVWTRTNTRITNQLMEQLEQDQDAFNSVYMMMISGARGSREQVRQLGGMKGLIGRPQKSTQGAVGEIIEHPIISNFQEGLNVIEYFIATHGARKGLADTALKTADAGYLTRRLVDVAQDLTVVEEDCGTLKGIHVTAVKVENRVVESLSERILGRVVVEDILDPQTGILLVARGNGIDEQMAARIEAAGLEGVLVRSVLTCDLPQGVCVKCYGRNLATGNMVSVGEAVGVIAAQSIGQPGTQLTMRTFHVGGIASNVTVDAKVKAKYAGVVNFEDLMVTSYIDANGMGVEVVMSRSSELQILDADTRKVLTSTHLPYGSHLKVKNNQMVSYDQELYHWDPYNVVLLATQDGVVNFLGLEEGITYQEEFDEQTGRKAKVMIESRDKTKHPSVVLCDEAGVTIASYTLPVKAQLAVEVGDKVHKGEVLARVPRIINQSRDITGGLPRVVELFEARKPANTAFISELSGVVTYGGIKRGNREIFIESKEGIQVKYMIPLSKHILVQDNDYVKVGEVITDGAVAAADLLVTKGPLVAQEYIMNELQNVYRLQGEKINNKHIEIIIKQMMRKVEVLDPGDTTLLHGQVIDKVKFFEENDRVRDQSIVLKPGDSTLFKQGQFISSSRLQQENDKLKQQGLVAVEAKPVELAVAQPKLQGITQISLATESFLSAASFQETAKVLSDAGISAKYDRLKGLKENIIVGHLIPAGTGMRRYEKLVVNSKSEYEALVAAKAGATAG
>CP022339.1|AXI24603.1|1043766_1047642_+|beta-subunit
MKKKPSSKQNCHMPSADTPANYTDLLEIQLKSFRDFFQLGVSPENRINEGLYKVFMEHFPIEDAKRNYILEFIDYNLELPQYTPRECIERGLTYDVPLKAKLRLLQNDEHTGKYEGVEQEVFLGNVPYMTDQGSFILSGVERVVVSQVHKSSGIFFFQNKHISGSNVYAAKVVPAKGVWIEFSVDINSVMYIYLDRKKKIPITTMLRAIGYSSDKDILDIFGLADEVKATRAVLEKQMGRKLAARVLKSCEECYVDEETGEEYLRTTHQVLVERNTVLDEAVIEVILSAEVASIILHKSEAVYADYHLVYNSFGKDTTNDTKEAIEQIYRQLRNAEAPDEQTAREVVESLFFSSKRYTLGEVGRYRINKKLNLDIPIKTCVLTQEDIVQIIHYLIKVVNGKAEVDDIDHLSNRRVRSVGEQLFTQFGVGFSRLARTIRERINIRDNELFKPADLINARTLSSVINSFFGINPLSQLIDQVNPLAEITHKRRVSALGPGGLSRDRAGFEVRDVHYSHYGRLCTIETPEGMNIGLISSLCMYARVNSMGFIETPYRRVADGKVDLSGDICYLNAAEEEHGNFAPANIRMDRDGVMLDNRVKVRNGDEYPLVKPEQVNYMDVSSSQIASVAASLIPFLEHNDASRALMGSNMQRQAVPLIRPDVPIVCTGVEKRVAKEFRGLPTAEGSGMVTYVDSRKVVVEYDRSAEEALVAFDEASVTYSMDKFRGTNRSTCINLSPIVAKGSRVEKGQVLCEGYATKNAELALGKNLKVAFLSWKGYTFEDGIVISERIVRDDVFTSIHIKEFILEVKDTKFGAEELTNEIPNVSEEAIAKLDLDGIVKVGTEVKEGDILIGKITPKGEIDVTPEARLLKAIFGDKAGDVKNTSLRVPSGMEGIVIDTKIFSSPERSKESKEKIKKELELLKRAHTKHLLKLRDIAIKKLSIVLDDIVTSGIYHQFGDEIIAEGTKLTSLLIAEKLFPSKNIYRDESLYNVPAEANLLGDLVWSNWTADPSKNELVQRIASNYVKKCVASIVRFKRDRFTLEAGDGLPKGVVKVAKVYIAEKRKLKVGDKMSGRHGNKGIVCKIVPQEDMPFLADGTPVDVVLSPLGLPSRMNLGQLYETVLGWAGDQLGKRYINPIFEGMSLDQISSELDQAGLPTFGKTTVYDGGTGMPFSQKVTVGVVYLLKLAHLVDDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLNTKSDDVVGRSKAYEAIVKGNNIPKPNLSESFNVLIHELRGLGLEITLV
>CP022339.1|AXI24602.1|1043373_1043751_+|ribosomal-protein-bL12
MAELKVLAEQLIKLTIKEANELSDILKNDYGIEPAAAAPMMMAAGPAATVEAAPAKTTFDVVVKSGGAAKLAVVKLVKEITGLTLKEAKEFVDGVPGTMKENLPKEEAETIKRKLEEAGAEVELK
>CP022339.1|AXI24612.1|1065145_1066258_+|tRNA-threonylcarbamoyl-adenosine-modification-protein-TsaD
MSKYCVKYAKSLNCMGATFRLYCMHRIQKNQAISVQMNHPLIILGIESSCDETAAAVIRGGKIVSNVVMSQLMHQKYGGVVPELAARAHETNMIPVVTAALEAAAIQKCALDAVGFTQGPGLLGPLLVGSCFAKSFAFSLGIPLIAVHHIQAHVWANFIDDPKPTFPFLCLTVSGGHTQIILVQDYCSMEVLGETQDDAVGEAFDKIASLMGLGYPGGPLIDHYAQGGNSQAFAFPATHIPGFDFSFSGIKTAFALFIRKQTPEFLLAHRADICASIQAVLVRMLLDKFTKAAQKSGITTVALAGGVAANSYLRQQLKALAEQHHWHVFIPAMPYCTDNAAMVAMTAYYKYQLNEFTDLTVKSLPRYPIG
>CP022339.1|AXI24613.1|1066372_1068775_-|Transposase-Mutator-family
MAPNNYKAQPDTPKKTVAPNPLILDQRTKITIGFLLQGISIFLACAFCSHLMHSHKDQAIIEAARTLGIKASGMAICNWLGFTGAFVSYYCVHMWWGITAFIFLPGLFLIGLKMVTQKIWPNLSLLKVMMASIFLVLWSNVLLGYLATLYPTATLLTNQLGGVGYALGTLFKALLGYGTFILLCTTLIIFAVVCFNITSLPTIRLFAGKQVKKDAACWVDQEMAREPLDAESGEVSSKKKTNHNATTTDVHHTHTPPAIAATNNVDFEVVAPQVQNLPPAAPPAPPKPMPLHPIRSENYDPTLDLSTYKYPALDLLERYDQAQLSVTQEELAINKNNIVQTLQNFKINIAKIKATIGPTVTLYEIVPEAGVKISKIKNLEDDIALNLAALGIRIIAPIPGKGTIGIEVPNKNREVVPLQEVLASEKFLKGKMDLPIVLGKSISNELFIADLGRMPHLLIAGATGQGKSVGLNVLLTSLIYKKHPSQLKLVLVDPKKVELSLYNRLERHFLAKLPISEEPIITETKKVIHTLNSLCIEMDHRYELLKEAGTRNIKEYNEKFIKRILNPQEGHRFLPYIVLVIDEFADMMMTAGKEIEVPIARLAQLARAIGIHLVLATQRPSVNVITGIIKANFPVRISYKVSSRIDSRTILDASGAEQLVGNGDMLLSMNSDIIRLQTPFLDTAEVERVCSYIGAQQGYPSAYLLPTYDEEDKEESTTVDLQSTDPLFEEAARLIVLHQQGSTSLIQRKLKLGYNRSGRLIDQLEAAGIVGPFEGSKARDVLVSDEAGLNEILERLQQKG
>CP022339.1|AXI24614.1|1068832_1069135_-|FeS-assembly-SUF-system-protein
MIQKEQVIEAIKQVYDPEIPVDIYELGLIYDITILPLNNIEILMTLTSPNCPAADVIPSQVEEKVKAIEEVNEVNVHITFEPPYTIDRMSQAAKLELGFA
>CP022339.1|AXI24615.1|1070521_1071070_+|PD-(D/E)XK-nuclease-superfamily
MDEVQEETGKQYSTSILNTLRNKKWSVFLNYIRSDCLAKAGYRFLDKTERSFQRALYLFLNGVFHATHDMQTSAESDSGIGRTDIVMEDHRNDQRAVYIFELKIDRPALEALTQIHSKDYSIKYGSCSEKILIGITCDAAKLNITEAIVQVHQKDEQDNFREVVYTHFTVDQSGYFKEVINQ
>CP022339.1|AXI24616.1|1072701_1072941_+|hypothetical-protein
MILLDITGALEGWITSGYQLLTLVAKLLGVVGAFRLAYLYNVGRDRGMIFHELLHWIGAIVFFSSVGPLYDMIANFFKL
>CP022339.1|AXI24617.1|1072964_1073288_+|hypothetical-protein
MQKLVNSPYLKEKGVLGPFSLPEALVALGICCLTYMVSCYCEDFLHYNRMWTISLTSLMIIISFLIKIFLKHSNPTWLSSLFAYHFLHVPIDIFRIKFKINAFLKKR
>CP022339.1|AXI24618.1|1073265_1075719_+|AAA-like-domain-protein
MLFSKKDKKEDLHRVLPFVDFHNDMAISADGTISVPFKATLAFQEQYTEQQYIDWTHMLSNSMKELPCNSLVQQVDIYYPDQWHNPSVDSNELDFFKQKQFSHTEGCPILCHESYIILSFPGLYKEYTPISTFYSRDETKSFIKNPFINLEKRLIIAKKDAAQFRQSVSTHLPLNTLTSGEFSRLVHRCLSLNFKDPEGTLYGGLLKDKAYLQLAGRKAQVISLMESAAEPSYTVLDRFGHNGGVCAPLTEGLGRSINFPHVISRVIRMIDSESFLKNHFNAFAWSEATKLDERKLQNIRHIRSEMADFEQTLRERNEPIVYLSFLVIPFGMTDLSTLNEYSSQVLAAFSGIGMRGYLETIDTANLFFAALPGNGNQVYRRLPIPLLTAVAHMNSTTPFTGYQEGVFLANRYREPIYLNPFNTDLDNQNAFIFGPSGSGKSFFNGKMIKDRFQAGHIVIVIDSGGTYRHLFSALGGKYIELSSEKSLGLNPFLFPADESGRYLPDSSKIIFLVQLIGKMWKGDLNENPMSEVEKSLLSQWISDYYRDLPKAVIPTLTGFYDYLQTLVAANGQAILDLKKEQLFPFQEFFIVLKPFANGIYKNHFNALEQDYLLDHRLVCFELEAIKQNSKLYPLVVQILFEFAFEMVSKHPDAIKFIDIEEGWTTLDDASREHIEAFYRKGRKTKTSIRIITQDIGEIKSSKIASAIKNNAATFILLYNEKSSSREEIGTFLGMNALDMQKYASLRRKNGPGGFREIFIKEMSQSHVWLLEPSLWEHAMFTSHPSERNQIASFTKKHGNIEDGIAEWVYHTKQKYYV
>CP022339.1|AXI24619.1|1075711_1076515_+|membrane-protein
MSSHFQGILSSSANLAAQNLMVDVTITKMIGVAKLLLLPFLLIRLIVYYFQYHLSSAELLKSCYTSLLTLTVTFILLQFYLDIFHILDKLTALIMKGFDWHDLIKPDSLKEYPEIGIWELIKNCFSNVTTKVLKSIAGIIGLTTTIFRHQAILFTLQVGPLAISASLLPGNFSGIIIYWLNMLISFLMWGVTIDLLDYSLISLEFNNVDGIGAAIATCLMYAMVGPLTSLYIGNTIGNSLFAIGEARTSQFMTYGVSSLQKLRKQNE
>CP022339.1|AXI24620.1|1076598_1077261_+|hypothetical-protein
MLDNKDYQSSTVQSIHKLNSYHYGNIINLLRFLVVFLLVSLGGLSAFLGYLVFKQNRSDLVYFATLEGTHVGIRKENPTNNSRESFEVENFSMRFIQDGFAHSENNYQENIERALTVMNNASRVTLKKLFSDDSLFQVYKESNGVTTVTVKRIVTDTASYPYKAEVYFQTDLKFLTGQGKVKTHSYHQGIALEMQPTSRCSKNPYGLMITDLTFLNHEAQ
>CP022339.1|AXI24621.1|1077247_1078048_+|hypothetical-protein
MKHSSLLLFLIFYFPVFALNIKVSDQYPTLLEFSGTIEKISFGNGDQEYVSKEEGRFLEVKAKRPGTSKTTVTVFYLVNEGKKNEKIDVFYGTVSYDAGIQPMYDLTHHKVKQIEELEKWDTDEPLTESLIEAIEYVSQDQPNIKRFHQTKQKVSCFLSNAISTGEEIVLKFVLKNSSPYNYKVGSVYFLGNNKDKTAIPIKLKPKRMVVVPGEIVPMTFVIKHKVEKSGIVVRFEEKKGRRDLSLTLPNRLLLSIPCLVKESKEV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage