CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP031321	Escherichia coli strain Es_ST2350_SE1_NDM_03_2018 chromosome, complete genome	0 crisprs	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	7
CP031323	Escherichia coli strain Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_2, complete sequence	0 crisprs	NA	0
CP031322	Escherichia coli strain Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_NDM, complete sequence	0 crisprs	DEDDh	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

149196 : 213141

Escherichia_phage(45.45%)

protease,holin,tail,capsid,tRNA,integrase,plate,lysis,portal,terminase,head

attL 154254:154281|attR 185872:185899

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXK26820.1\|149196_150600_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.0e-32	29.0
AXK26821.1\|150596_151319_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.9e-30	33.2
AXK26822.1\|151509_151842_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AXK26823.1\|152050_152347_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AXK26824.1\|152348_152645_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXK26825.1\|152747_154109_+\|protease	protease	Q6DW11	Phage_TP	1.1e-217	100.0
154254:154281	attL	NA	NA	NA	NA
AXK30928.1\|154381_154636_-	DNA-binding transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	6.1e-45	100.0
AXK26826.1\|154681_155845_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	6.3e-206	99.7
AXK26827.1\|155844_156324_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	9.6e-84	98.1
AXK26828.1\|156338_158786_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	0.0e+00	94.8
AXK30929.1\|158778_158898_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.4e-15	97.4
AXK26829.1\|158930_159206_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AXK26830.1\|159262_159781_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
AXK26831.1\|159793_160984_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.6e-225	100.0
AXK26832.1\|162200_162728_-\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	1.4e-91	95.4
AXK26833.1\|162731_165050_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.4e-212	66.8
AXK26834.1\|165060_165591_-\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	1.0e-102	100.0
AXK26835.1\|165583_166492_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	1.5e-162	100.0
AXK26836.1\|166496_166844_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	6.5e-58	99.1
AXK26837.1\|166840_167476_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	7.2e-111	97.6
AXK26838.1\|167542_167995_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	6.9e-76	98.7
AXK26839.1\|167987_168455_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	5.1e-82	99.4
AXK26840.1\|168417_168591_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	1.5e-23	93.0
AXK26841.1\|168562_168988_-\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	7.2e-67	97.2
AXK26842.1\|168975_169401_-	protein lysA	A0A0F7LBP4	Escherichia_phage	1.4e-57	94.3
AXK26843.1\|169415_169913_-	lysozyme	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
AXK26844.1\|169912_170194_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AXK26845.1\|170197_170401_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
AXK26846.1\|170400_170910_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
AXK26847.1\|171009_171753_-\|terminase	terminase	Q94MK1	Enterobacteria_phage	2.1e-122	100.0
AXK26848.1\|171756_172830_-\|capsid	phage major capsid protein, P2 family	Q94MK2	Enterobacteria_phage	1.1e-199	99.4
AXK26849.1\|173915_175688_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	100.0
AXK26850.1\|175687_176716_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	6.2e-197	99.1
AXK26851.1\|176774_177347_-	hypothetical protein	NA	NA	NA	NA
AXK26852.1\|177339_178773_-	ABC transporter	A0A2I7RNF1	Vibrio_phage	3.9e-40	30.1
AXK26853.1\|178969_179164_-	hypothetical protein	NA	NA	NA	NA
AXK26854.1\|179937_182214_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.9
AXK26855.1\|182203_182479_-	hypothetical protein	Q858T5	Yersinia_virus	3.8e-45	100.0
AXK26856.1\|182475_182700_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
AXK26857.1\|182699_183002_-	hypothetical protein	A0A0F7LCL4	Escherichia_phage	8.5e-46	98.0
AXK26858.1\|183001_183226_-	DUF2732 family protein	A0A0F7LBR4	Escherichia_phage	5.2e-32	97.3
AXK26859.1\|183289_183790_-	replication protein B	M1SV55	Escherichia_phage	2.6e-92	100.0
AXK26860.1\|183967_184243_-	hypothetical protein	Q1JS60	Enterobacteria_phage	1.3e-48	100.0
AXK26861.1\|184364_184664_+	helix-turn-helix domain-containing protein	Q1JS61	Enterobacteria_phage	2.4e-48	100.0
AXK26862.1\|184778_185792_+\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	4.1e-193	99.1
AXK26863.1\|185919_186069_-	hypothetical protein	NA	NA	NA	NA
185872:185899	attR	NA	NA	NA	NA
AXK26864.1\|186056_186374_-	hypothetical protein	NA	NA	NA	NA
AXK26865.1\|186779_187679_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
AXK26866.1\|187760_188540_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
AXK26867.1\|188639_189680_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
AXK26868.1\|189727_191083_-	galactitol permease IIC component	NA	NA	NA	NA
AXK26869.1\|191086_191371_-	galactitol-specific phosphotransferase enzyme IIB component	NA	NA	NA	NA
AXK26870.1\|191401_191854_-	galactitol-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA
AXK26871.1\|191863_193126_-	tagatose-1,6-bisphosphate aldolase	NA	NA	NA	NA
AXK26872.1\|194317_195370_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
AXK26873.1\|195626_196904_+	MFS transporter	NA	NA	NA	NA
AXK26874.1\|196900_197905_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	7.5e-14	29.4
AXK26875.1\|199637_200456_-	hydrolase	D0R7H8	Paenibacillus_phage	2.3e-24	38.5
AXK26876.1\|200520_201321_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
AXK26877.1\|201317_202106_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
AXK26878.1\|202328_202601_-	transcriptional regulator	NA	NA	NA	NA
AXK26879.1\|202721_203546_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
AXK26880.1\|203764_204103_+	nickel/cobalt homeostasis protein RcnB	NA	NA	NA	NA
AXK26881.1\|205236_207717_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AXK26882.1\|207732_208407_-	fimbrial assembly protein	NA	NA	NA	NA
AXK26883.1\|208487_209030_-	type 1 fimbrial protein	NA	NA	NA	NA
AXK26884.1\|209322_209604_-	DUF2574 family protein	NA	NA	NA	NA
AXK26885.1\|209866_210976_-	protein mrp	NA	NA	NA	NA
AXK26886.1\|211107_213141_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6

DBSCAN-SWA_2

225652 : 235093

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXK26890.1\|225652_226789_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.2e-162	97.4
AXK26891.1\|226785_228786_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.6
AXK26892.1\|228910_229372_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AXK26893.1\|229411_229882_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
AXK26894.1\|229928_230648_-	DNA-binding response regulator	NA	NA	NA	NA
AXK26895.1\|230644_232330_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AXK26896.1\|232551_233283_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AXK26897.1\|233342_233450_+	hypothetical protein	NA	NA	NA	NA
AXK26898.1\|233430_234162_-	ABC transporter permease	NA	NA	NA	NA
AXK26899.1\|234166_235093_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.7e-24	30.8

DBSCAN-SWA_3

815099 : 822239

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXK27394.1\|815099_817661_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6
AXK27395.1\|817766_818423_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	4.3e-50	46.7
AXK27396.1\|818473_819241_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
AXK27397.1\|819436_820345_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AXK27398.1\|820341_821604_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AXK27399.1\|821600_822239_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_4

1850934 : 1861327

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXK28331.1\|1850934_1852116_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	4.3e-210	92.7
AXK28332.1\|1852251_1853688_+	ATP-binding protein	NA	NA	NA	NA
AXK28333.1\|1853696_1854623_+	DUF4435 domain-containing protein	NA	NA	NA	NA
AXK28334.1\|1854826_1855399_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.1e-97	98.9
AXK28335.1\|1855413_1855659_-	hypothetical protein	Q7M294	Enterobacteria_phage	3.9e-41	98.8
AXK28336.1\|1856737_1856929_+	hypothetical protein	NA	NA	NA	NA
AXK28337.1\|1856941_1857208_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
AXK28338.1\|1857204_1857795_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	8.2e-69	98.5
AXK28339.1\|1857787_1858075_+	Derepression protein	Q7M2A0	Enterobacteria_phage	5.1e-48	98.9
AXK28340.1\|1858067_1858523_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
AXK28341.1\|1858658_1858979_+	hypothetical protein	NA	NA	NA	NA
AXK28342.1\|1858993_1861327_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.7

DBSCAN-SWA_5

2965947 : 2972726

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXK29302.1\|2965947_2967153_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	5.5e-144	60.7
AXK29303.1\|2967127_2968510_+	hypothetical protein	NA	NA	NA	NA
AXK31030.1\|2968422_2968659_-	hypothetical protein	NA	NA	NA	NA
AXK29304.1\|2968711_2969284_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.5e-94	96.2
AXK29305.1\|2969357_2969858_-	transactivation protein	NA	NA	NA	NA
AXK29306.1\|2969854_2970589_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.4e-129	98.8
AXK29307.1\|2971140_2971407_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	6.3e-45	98.9
AXK29308.1\|2971990_2972278_+	Derepression protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
AXK29309.1\|2972270_2972726_+	hypothetical protein	Q7M298	Enterobacteria_phage	5.2e-63	97.3

DBSCAN-SWA_6

3243246 : 3303391

Enterobacteria_phage(54.55%)

protease,capsid,tRNA,tail,integrase,transposase,lysis,portal,terminase,head

attL 3253408:3253454|attR 3303815:3303861

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXK29553.1\|3243246_3244632_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
AXK29554.1\|3244667_3245189_-	metal-dependent hydrolase	NA	NA	NA	NA
AXK29555.1\|3245296_3245509_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
AXK29556.1\|3245510_3246377_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
AXK29557.1\|3246857_3247400_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
AXK29558.1\|3247619_3248312_+	molecular chaperone FimC	NA	NA	NA	NA
AXK29559.1\|3250964_3251972_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
AXK29560.1\|3251982_3252498_+	fimbriae assembly protein	NA	NA	NA	NA
AXK29561.1\|3252500_3253133_-	DNA-binding response regulator	NA	NA	NA	NA
3253408:3253454	attL	NA	NA	NA	NA
AXK29562.1\|3253467_3254631_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	4.4e-199	86.3
AXK29563.1\|3254486_3254858_-	DNA-binding protein	M1FJ59	Enterobacteria_phage	4.7e-46	81.0
AXK29564.1\|3254829_3255108_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
AXK29565.1\|3255164_3255374_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	4.4e-33	100.0
AXK29566.1\|3255764_3255956_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
AXK29567.1\|3255928_3256111_-	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
AXK29568.1\|3256783_3257569_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	1.8e-148	99.6
AXK29569.1\|3257574_3257871_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
AXK29570.1\|3257946_3258153_-	cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
AXK29571.1\|3258748_3259504_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
AXK29572.1\|3259542_3259773_+	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
AXK29573.1\|3259842_3260382_+	regulator	M9NZI6	Enterobacteria_phage	1.2e-61	66.1
AXK29574.1\|3260378_3261398_+	Replication protein O	A0A0M5M7Y1	Salmonella_phage	8.8e-111	64.1
AXK29575.1\|3262092_3262395_+	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
AXK29576.1\|3262462_3262795_+	multidrug SMR transporter	NA	NA	NA	NA
AXK29577.1\|3265041_3265593_+	kinase inhibitor	NA	NA	NA	NA
AXK29578.1\|3265602_3266400_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXK29579.1\|3266516_3266618_+	hypothetical protein	NA	NA	NA	NA
AXK29580.1\|3266614_3267070_+	hypothetical protein	I6PD71	Cronobacter_phage	5.4e-60	66.9
AXK29581.1\|3267069_3267240_+	hypothetical protein	K7P7K0	Enterobacteria_phage	1.5e-12	67.9
AXK29582.1\|3267232_3267523_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
AXK29583.1\|3267519_3267882_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
AXK29584.1\|3267878_3268019_+	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
AXK29585.1\|3268104_3268488_+	antitermination protein Q	A0A088CD47	Shigella_phage	4.4e-55	83.3
AXK29586.1\|3268676_3269759_-	porin OmpD	Q1MVN1	Enterobacteria_phage	8.9e-154	76.3
AXK29587.1\|3270348_3270564_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	9.0e-34	100.0
AXK29588.1\|3270563_3271061_+	lysozyme	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
AXK29589.1\|3271057_3271519_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	2.4e-76	99.3
AXK29590.1\|3271550_3271844_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	1.3e-43	89.7
AXK29591.1\|3272204_3272399_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
AXK29592.1\|3272788_3273334_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AXK29593.1\|3273308_3275234_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
AXK29594.1\|3275230_3275437_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AXK29595.1\|3275433_3277035_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.9e-310	99.4
AXK29596.1\|3277015_3278335_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.0e-233	98.4
AXK29597.1\|3278344_3278677_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.5e-54	98.2
AXK29598.1\|3278732_3279758_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.1e-188	97.9
AXK29599.1\|3279799_3280195_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	4.4e-58	94.7
AXK29600.1\|3280206_3280560_+\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
AXK29601.1\|3280571_3281150_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
AXK29602.1\|3281146_3281542_+\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
AXK31037.1\|3281549_3282290_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.4e-129	98.0
AXK29603.1\|3282305_3282728_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
AXK29604.1\|3282709_3283144_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AXK29605.1\|3283136_3285716_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	97.3
AXK29606.1\|3285712_3286042_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
AXK29607.1\|3286041_3286740_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.5e-133	99.1
AXK29608.1\|3286786_3287488_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.1e-132	97.2
AXK29609.1\|3287385_3288057_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.1e-104	99.6
AXK29610.1\|3288116_3291614_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	97.8
AXK29611.1\|3291684_3292284_+	Ail/Lom family protein	A5LH44	Enterobacteria_phage	8.2e-109	97.5
AXK31038.1\|3292348_3295375_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	7.2e-68	82.1
AXK29612.1\|3295371_3296091_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	4.6e-90	73.1
AXK29613.1\|3296060_3297274_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-100	57.1
AXK29614.1\|3297543_3298119_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.9e-101	93.7
AXK29615.1\|3298216_3298807_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	4.7e-24	35.3
AXK29616.1\|3299125_3299359_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	3.2e-32	87.0
AXK31039.1\|3299906_3300533_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXK29617.1\|3301438_3302188_+	transcriptional regulator	NA	NA	NA	NA
AXK29618.1\|3302437_3303391_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
3303815:3303861	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4021333 : 4084567

Enterobacteria_phage(34.21%)

protease,holin,tail,capsid,integrase,plate,portal,terminase,head

attL 4013828:4013841|attR 4023841:4023854

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4013828:4013841	attL	NA	NA	NA	NA
AXK30262.1\|4021333_4022464_-\|integrase	integrase	O21940	Phage_21	5.7e-103	51.1
AXK30263.1\|4022441_4022690_-	excisionase	NA	NA	NA	NA
AXK30264.1\|4022753_4025225_-	exonuclease	K7PLW7	Enterobacteria_phage	5.5e-58	60.0
4023841:4023854	attR	NA	NA	NA	NA
AXK30265.1\|4025305_4025509_-	DUF1482 family protein	NA	NA	NA	NA
AXK30266.1\|4025511_4025694_-	cell division inhibition protein DicB	NA	NA	NA	NA
AXK30267.1\|4026180_4026798_-	hypothetical protein	NA	NA	NA	NA
AXK31072.1\|4026757_4026913_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.0e-07	53.2
AXK30268.1\|4027178_4027598_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
AXK30269.1\|4027698_4027980_+	Cro/Cl family transcriptional regulator	K7PHA1	Enterobacteria_phage	6.5e-24	72.6
AXK30270.1\|4027963_4028389_+	Rha family transcriptional regulator	NA	NA	NA	NA
AXK30271.1\|4028460_4029531_+	phage replisome organizer	A0A088CD36	Shigella_phage	1.4e-63	64.6
AXK30272.1\|4029571_4029994_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.5e-61	86.3
AXK31073.1\|4034247_4034463_+	hypothetical protein	NA	NA	NA	NA
AXK30273.1\|4034621_4034834_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
AXK30274.1\|4035292_4035571_+	hypothetical protein	I6PCV7	Cronobacter_phage	7.4e-12	46.9
AXK30275.1\|4035572_4036622_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	5.9e-110	55.5
AXK30276.1\|4036634_4037003_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.5e-32	60.9
AXK31074.1\|4036995_4037364_+	antitermination protein	Q777W5	Enterobacteria_phage	3.9e-53	82.5
AXK30277.1\|4037514_4038333_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXK30278.1\|4038618_4038816_+	TrmB family transcriptional regulator	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
AXK30279.1\|4038966_4040013_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	7.7e-187	89.6
AXK30280.1\|4041515_4041908_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	8.2e-49	86.2
AXK31075.1\|4041897_4042173_+\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	2.8e-43	96.7
AXK30281.1\|4042175_4042553_+	M15 family peptidase	Q9MBZ3	Enterobacteria_phage	3.5e-65	99.2
AXK30282.1\|4042924_4043221_+	hypothetical protein	Q8W634	Enterobacteria_phage	6.2e-49	93.9
AXK30283.1\|4043280_4043949_+	hypothetical protein	G8EY51	Synechococcus_phage	3.5e-07	28.8
AXK30284.1\|4043948_4044278_+	hypothetical protein	NA	NA	NA	NA
AXK30285.1\|4044709_4045327_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AXK30286.1\|4045280_4047260_+\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	4.5e-135	45.3
AXK30287.1\|4047256_4047508_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AXK30288.1\|4047516_4049157_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	9.2e-94	37.5
AXK30289.1\|4049153_4050014_+	S49 family peptidase	A0A2H4PRE9	Proteus_phage	1.4e-48	46.4
AXK30290.1\|4050006_4050585_+	hypothetical protein	NA	NA	NA	NA
AXK31076.1\|4050671_4050986_+\|head	head decoration protein	NA	NA	NA	NA
AXK30291.1\|4051041_4052097_+\|capsid	major capsid protein	A0A2D1GMR5	Marinobacter_phage	9.6e-36	31.5
AXK30292.1\|4052098_4052284_+	hypothetical protein	NA	NA	NA	NA
AXK30293.1\|4052267_4052600_+	hypothetical protein	NA	NA	NA	NA
AXK30294.1\|4052599_4053160_+\|tail	phage tail protein	NA	NA	NA	NA
AXK30295.1\|4053173_4053410_+	DUF2635 domain-containing protein	NA	NA	NA	NA
AXK30296.1\|4053406_4054909_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.0e-103	43.9
AXK30297.1\|4054948_4055314_+\|tail	phage tail protein	NA	NA	NA	NA
AXK30298.1\|4055316_4055595_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AXK30299.1\|4055730_4057689_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	2.5e-21	42.8
AXK30300.1\|4057699_4059106_+	multidrug DMT transporter permease	J7FAD8	Agrobacterium_phage	4.0e-05	33.0
AXK30301.1\|4059102_4060191_+	hypothetical protein	Q8SBG7	Shigella_phage	2.1e-38	31.4
AXK30302.1\|4060187_4060769_+\|plate	baseplate assembly protein	Q8SBG6	Shigella_phage	5.5e-17	34.5
AXK30303.1\|4060770_4061208_+	hypothetical protein	A0A2P9JZK5	Alteromonadaceae_phage	4.3e-22	41.6
AXK30304.1\|4061209_4062364_+\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	6.4e-33	32.2
AXK30305.1\|4062360_4066704_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	3.0e-14	32.5
AXK30306.1\|4066750_4067542_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.6e-17	55.8
AXK30307.1\|4067551_4068091_+\|tail	tail assembly chaperone	A0A1B0VCD0	Salmonella_phage	7.3e-32	41.3
AXK30308.1\|4068310_4069111_-	alpha/beta hydrolase	NA	NA	NA	NA
AXK30309.1\|4069728_4070292_-	ORF6N domain-containing protein	Q8VNP5	Enterobacteria_phage	2.9e-47	71.2
AXK30310.1\|4070936_4071443_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AXK30311.1\|4071488_4071989_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AXK30312.1\|4072074_4072254_-	hypothetical protein	NA	NA	NA	NA
AXK30313.1\|4072634_4073441_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
AXK30314.1\|4073440_4074634_-	tryptophan synthase subunit beta	NA	NA	NA	NA
AXK31077.1\|4074645_4076004_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
AXK30315.1\|4076007_4077603_-	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
AXK30316.1\|4077602_4079165_-	anthranilate synthase component I	NA	NA	NA	NA
AXK31078.1\|4079256_4079301_-	trp operon leader peptide	NA	NA	NA	NA
AXK30317.1\|4079438_4080320_+	5'-3' exoribonuclease	NA	NA	NA	NA
AXK30318.1\|4080316_4080937_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AXK30319.1\|4081037_4081910_+	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA
AXK30320.1\|4081949_4082540_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
AXK30321.1\|4082536_4083295_-	NAD(P)-dependent oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.5e-06	25.0
AXK30322.1\|4083514_4084567_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19891 : 53620

Escherichia_phage(33.33%)

transposase,protease,integrase

attL 22239:22253|attR 54337:54351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXK31119.1\|19891_21262_-\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
AXK31120.1\|21462_22146_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.1
22239:22253	attL	NA	NA	NA	NA
AXK31121.1\|24833_25343_-	ROS/MUCR transcriptional regulator domain protein	NA	NA	NA	NA
AXK31122.1\|25390_27478_-	conjugal transfer protein TrbC	NA	NA	NA	NA
AXK31123.1\|27490_28441_-	DsbC family protein	NA	NA	NA	NA
AXK31180.1\|28451_29714_-	conjugal transfer protein TrbA	NA	NA	NA	NA
AXK31181.1\|29758_30034_-	lytic transglycosylase	NA	NA	NA	NA
AXK31182.1\|30258_30642_-	DUF1496 domain-containing protein	NA	NA	NA	NA
AXK31124.1\|30721_31375_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXK31125.1\|31467_31725_+	antitoxin	NA	NA	NA	NA
AXK31126.1\|31726_32059_+	mRNA interferase PemK	NA	NA	NA	NA
AXK31127.1\|32403_32838_+	peptidase	A0A1W6JNS2	Morganella_phage	4.7e-29	55.4
AXK31128.1\|32786_34091_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	1.2e-112	50.8
AXK31129.1\|34113_34962_-	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	5.0e-27	38.9
AXK31130.1\|34964_35285_-	chromosome segregation protein ParM	NA	NA	NA	NA
AXK31183.1\|35429_35681_-	hypothetical protein	NA	NA	NA	NA
AXK31131.1\|36136_36346_-	hypothetical protein	NA	NA	NA	NA
AXK31132.1\|36348_36567_-	hypothetical protein	NA	NA	NA	NA
AXK31133.1\|36611_37295_-	hypothetical protein	NA	NA	NA	NA
AXK31134.1\|37291_37564_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXK31135.1\|37581_38856_-	RelB antitoxin	NA	NA	NA	NA
AXK31136.1\|39382_39727_+	hypothetical protein	NA	NA	NA	NA
AXK31137.1\|39909_40494_+	hypothetical protein	NA	NA	NA	NA
AXK31138.1\|40839_41523_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.6e-132	100.0
AXK31139.1\|42256_43798_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXK31140.1\|44202_45042_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXK31185.1\|45035_45371_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AXK31184.1\|45263_45629_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
AXK31141.1\|45632_46508_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXK31142.1\|47334_47994_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
AXK31143.1\|47998_48364_-	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
AXK31144.1\|48367_49180_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
AXK31145.1\|49488_50193_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXK31146.1\|50846_51308_+	hypothetical protein	NA	NA	NA	NA
AXK31147.1\|51304_51553_+	XRE family transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	53.0
AXK31148.1\|51545_52133_+	restriction endonuclease	NA	NA	NA	NA
AXK31149.1\|52129_52615_+	hypothetical protein	NA	NA	NA	NA
AXK31150.1\|52611_52860_+	hypothetical protein	NA	NA	NA	NA
AXK31151.1\|52879_53620_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
54337:54351	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031321

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection