CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031330	Neisseria meningitidis strain M21955 chromosome, complete genome	8 crisprs	NA	4	0	0	0

Cas Category Instructions

Results visualization

1. CP031330

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CRISPR-Cas detection and classification

Crispr_ID: CP031330_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_1

446316-446421

Orphan

I-E

Consensus_repeat	Method
GTTCTAGATTCCCGCCTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031330_1

>merge|CP031330|1|446316-446421|CRISPRCasFinder
GTTCTAGATTCCCGCCTGCGCGGGAATGACGATGAAAAGATTGTTGTCGCTTCGGATAAATTTTTGTCGCGTTGGGTTCTAGATTCCCGCCTGCGCGGGAATGACG

>CP031330|1|1|446316-446421|CRISPRCasFinder
GTTCTAGATTCCCGCCTGCGCGGGAATGACG	ATGAAAAGATTGTTGTCGCTTCGGATAAATTTTTGTCGCGTTGG
GTTCTAGATTCCCGCCTGCGCGGGAATGACG

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Crispr_ID: CP031330_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_2

1328451-1328549

Orphan

I-E

Consensus_repeat	Method
GGATTCCCGCCTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031330_2

>merge|CP031330|2|1328451-1328549|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACGATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACCGGATTCCCGCCTGCGCGGAAATGACG

>CP031330|2|2|1328451-1328549|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACG	ATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACC
GGATTCCCGCCTGCGCGGAAATGACG

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Crispr_ID: CP031330_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_3

1502721-1502818

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCCGCAAAAGTGGGAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031330_3

>merge|CP031330|3|1502721-1502818|CRISPRCasFinder
CGTCATTCCCGCAAAAGTGGGAATCTAGTTCGTTGGTTTCAGTTATTTAGAATAAATTTTGAAACTTTAATCCCGTCATTCCCGCGAAAGTGGGAATC

>CP031330|3|3|1502721-1502818|CRISPRCasFinder
CGTCATTCCCGCAAAAGTGGGAATC	TAGTTCGTTGGTTTCAGTTATTTAGAATAAATTTTGAAACTTTAATCC
CGTCATTCCCGCGAAAGTGGGAATC

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Crispr_ID: CP031330_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_4

1547608-1547691

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCACTTTCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031330_4

>merge|CP031330|4|1547608-1547691|CRISPRCasFinder
CTAGATTCCCACTTTCGCGGGAATGACGGGATGTAGGTTTTCTTAACCCTGCGTCCTAGATTCCCGCTTTCGCGGGAATGACGG

>CP031330|4|4|1547608-1547691|CRISPRCasFinder
CTAGATTCCCACTTTCGCGGGAATGACGG	GATGTAGGTTTTCTTAACCCTGCGTC
CTAGATTCCCGCTTTCGCGGGAATGACGG

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Crispr_ID: CP031330_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_5

1642348-1642428

Orphan

I-E

Consensus_repeat	Method
GATTCCCACTTTCGTGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031330_5

>merge|CP031330|5|1642348-1642428|CRISPRCasFinder
GATTCCCACTTTCGTGGGAATGACGGGATGCAGGTTTTCTTAACCCCGCGTTCTAGATTCCCACTTTCGTAGGAATGACGG

>CP031330|5|5|1642348-1642428|CRISPRCasFinder
GATTCCCACTTTCGTGGGAATGACGG	GATGCAGGTTTTCTTAACCCCGCGTTCTA
GATTCCCACTTTCGTAGGAATGACGG

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Crispr_ID: CP031330_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_6

1887547-1887771

Orphan

I-E

Consensus_repeat	Method
CCGTCATTCCCGCGCAGGCGGGAATC	CRISPRCasFinder

3 spacers

The CRISPR arrays of CP031330_6

>merge|CP031330|6|1887547-1887771|CRISPRCasFinder
CCGTTATTCCCTCGAAAACAGAAAACAGAAAACAAAGACGGAAACTTAAGATTCCGTCATTCCCGCGCAGGCGGGAATCCGACTTGTCCGGTTTTGGTTGTTTTTCGTTCCGTAACTTTTGAGCCGTCATTCCCGCGCAGGCGGGAATCTGGAATTTCAATGCCTCAAGAATTTATCGGAAAAAACCAAAACCCTTCCGCCGTCATTCCCACGAAAGTGGGAATC

>CP031330|6|6|1887547-1887771|CRISPRCasFinder
CCGTTATTCCCTCGAAAACAGAAAAC	AGAAAACAAAGACGGAAACTTAAGATT
CCGTCATTCCCGCGCAGGCGGGAATC	CGACTTGTCCGGTTTTGGTTGTTTTTCGTTCCGTAACTTTTGAG
CCGTCATTCCCGCGCAGGCGGGAATC	TGGAATTTCAATGCCTCAAGAATTTATCGGAAAAAACCAAAACCCTTCCG
CCGTCATTCCCACGAAAGTGGGAATC

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Crispr_ID: CP031330_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_7

1891111-1891209

Orphan

I-E

Consensus_repeat	Method
TGGATTTCTGCCTGCGCGGGAATGACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031330_7

>merge|CP031330|7|1891111-1891209|CRISPRCasFinder
TGGATTTCTGCCTGCGCGGGAATGACGGCTCAAAAGTTACGAGACGAAAAACAACCGGAACCGGACAAGTTGGATTTCTGCCTGCGCGGGAATGACGGC

>CP031330|7|7|1891111-1891209|CRISPRCasFinder
TGGATTTCTGCCTGCGCGGGAATGACGGC	TCAAAAGTTACGAGACGAAAAACAACCGGAACCGGACAAGT
TGGATTTCTGCCTGCGCGGGAATGACGGC

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Crispr_ID: CP031330_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031330_8

2214422-2214576

Orphan

Consensus_repeat	Method
GTCGGCGATGTTGGCGCAGCGGCTTAATTGCAGCGAGGCCGCGTTGCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031330_8

>merge|CP031330|8|2214422-2214576|CRISPRCasFinder
GTCGGCGATGTTGGCGCAGCGGCTTAATTGCAGCGAGGCCGCGTTGCGGCGGCGGACATCGGCGGGAATGTCGGCGACCACCCAGTGCATCCAGCCCAGTCCGGTCGGCGATGTTGGCGCAGCGGCTTAATTGCAGCGAGGTCGCGTTGCGGCGG

>CP031330|8|8|2214422-2214576|CRISPRCasFinder
GTCGGCGATGTTGGCGCAGCGGCTTAATTGCAGCGAGGCCGCGTTGCGGCGG	CGGACATCGGCGGGAATGTCGGCGACCACCCAGTGCATCCAGCCCAGTCCG
GTCGGCGATGTTGGCGCAGCGGCTTAATTGCAGCGAGGTCGCGTTGCGGCGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031330_1	1.1\|446347\|44\|CP031330\|CRISPRCasFinder	446347-446390	44	CP031330.1	1630032-1630075	0	1.0
CP031330_4	4.1\|1547637\|26\|CP031330\|CRISPRCasFinder	1547637-1547662	26	CP031330.1	82283-82308	0	1.0
CP031330_4	4.1\|1547637\|26\|CP031330\|CRISPRCasFinder	1547637-1547662	26	CP031330.1	82801-82826	0	1.0
CP031330_4	4.1\|1547637\|26\|CP031330\|CRISPRCasFinder	1547637-1547662	26	CP031330.1	614576-614601	0	1.0
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	81944-81993	0	1.0
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	82462-82511	0	1.0
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	587728-587777	0	1.0
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	1067683-1067732	0	1.0
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	1507435-1507484	0	1.0
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	2094303-2094352	0	1.0
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	2095380-2095429	0	1.0
CP031330_4	4.1\|1547637\|26\|CP031330\|CRISPRCasFinder	1547637-1547662	26	CP031330.1	81766-81791	1	0.962
CP031330_4	4.1\|1547637\|26\|CP031330\|CRISPRCasFinder	1547637-1547662	26	CP031330.1	791920-791945	1	0.962
CP031330_4	4.1\|1547637\|26\|CP031330\|CRISPRCasFinder	1547637-1547662	26	CP031330.1	792566-792591	1	0.962
CP031330_1	1.1\|446347\|44\|CP031330\|CRISPRCasFinder	446347-446390	44	CP031330.1	1629755-1629798	2	0.955
CP031330_1	1.1\|446347\|44\|CP031330\|CRISPRCasFinder	446347-446390	44	CP031330.1	1631695-1631738	2	0.955
CP031330_5	5.1\|1642374\|29\|CP031330\|CRISPRCasFinder	1642374-1642402	29	CP031330.1	81763-81791	2	0.931
CP031330_6	6.3\|1887696\|50\|CP031330\|CRISPRCasFinder	1887696-1887745	50	CP031330.1	942879-942928	2	0.96

1. spacer 1.1|446347|44|CP031330|CRISPRCasFinder matches to position: 1630032-1630075, mismatch: 0, identity: 1.0

atgaaaagattgttgtcgcttcggataaatttttgtcgcgttgg	CRISPR spacer
atgaaaagattgttgtcgcttcggataaatttttgtcgcgttgg	Protospacer
********************************************

2. spacer 4.1|1547637|26|CP031330|CRISPRCasFinder matches to position: 82283-82308, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

3. spacer 4.1|1547637|26|CP031330|CRISPRCasFinder matches to position: 82801-82826, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

4. spacer 4.1|1547637|26|CP031330|CRISPRCasFinder matches to position: 614576-614601, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

5. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 81944-81993, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

6. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 82462-82511, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

7. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 587728-587777, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

8. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 1067683-1067732, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

9. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 1507435-1507484, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

10. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 2094303-2094352, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

11. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 2095380-2095429, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

12. spacer 4.1|1547637|26|CP031330|CRISPRCasFinder matches to position: 81766-81791, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgcaggttttcttaaccctgcgtc	Protospacer
****.*********************

13. spacer 4.1|1547637|26|CP031330|CRISPRCasFinder matches to position: 791920-791945, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

14. spacer 4.1|1547637|26|CP031330|CRISPRCasFinder matches to position: 792566-792591, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

15. spacer 1.1|446347|44|CP031330|CRISPRCasFinder matches to position: 1629755-1629798, mismatch: 2, identity: 0.955

atgaaaagattgttgtcgcttcggataaatttttgtcgcgttgg	CRISPR spacer
atgaaaagattgttgtcgcttcggataaatttttgccgtgttgg	Protospacer
***********************************.**.*****

16. spacer 1.1|446347|44|CP031330|CRISPRCasFinder matches to position: 1631695-1631738, mismatch: 2, identity: 0.955

atgaaaagattgttgtcgcttcggataaatttttgtcgcgttgg	CRISPR spacer
atgaaaagattgttgtcgcttcggataaatttttgccgtgttgg	Protospacer
***********************************.**.*****

17. spacer 5.1|1642374|29|CP031330|CRISPRCasFinder matches to position: 81763-81791, mismatch: 2, identity: 0.931

gatgcaggttttcttaaccccgcgttcta	CRISPR spacer
gatgcaggttttcttaaccctgcgtccta	Protospacer
********************.****.***

18. spacer 6.3|1887696|50|CP031330|CRISPRCasFinder matches to position: 942879-942928, mismatch: 2, identity: 0.96

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaacaaaaaccttccg	Protospacer
************************************ ***** *******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage