CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031333	Neisseria meningitidis strain M18727 chromosome, complete genome	9 crisprs	NA	3	0	0	0

Cas Category Instructions

Results visualization

1. CP031333

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CRISPR-Cas detection and classification

Crispr_ID: CP031333_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_1

316502-316626

Orphan

Consensus_repeat	Method
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCGCCGTCATTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031333_1

>merge|CP031333|1|316502-316626|CRISPRCasFinder
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCACCGTCATTCCCGCGAAAGCGGGAATCTAGACCCCAAACGCGGCAGGAATCTATCGGAAAAAACAGAAACCCCCGCCGCCGTCATTCCCGC

>CP031333|1|1|316502-316626|CRISPRCasFinder
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCACCGTCATTCCCGC	GAAAGCGGGAATCTAGACCCCAAACGCGG
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCGCCGTCATTCCCGC

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Crispr_ID: CP031333_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_2

1215405-1215583

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTCGCGGGAATGACG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP031333_2

>merge|CP031333|2|1215405-1215583|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGGCATAGGGGTTTCTGTTTTCCCGATAAATTCCTGTTGCTTTTCGTTTCTAGATTCCCGCTTTCGCAGGAATGACGATGGAAAGATTGTTGTTGCTTCGGATAAATTTCTGCAGTTTTAAATAACCGGATTCCCGCCTGCTCGGGAATGACG

>CP031333|2|2|1215405-1215583|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACG	GCATAGGGGTTTCTGTTTTCCCGATAAATTCCTGTTGCTTTTCGTTT
CTAGATTCCCGCTTTCGCAGGAATGACG	ATGGAAAGATTGTTGTTGCTTCGGATAAATTTCTGCAGTTTTAAATAA
CCGGATTCCCGCCTGCTCGGGAATGACG

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Crispr_ID: CP031333_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_3

1305662-1305760

Orphan

I-E

Consensus_repeat	Method
GGATTCCCGCCTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031333_3

>merge|CP031333|3|1305662-1305760|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACGATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACCGGATTCCCGCCTGCGCGGAAATGACG

>CP031333|3|3|1305662-1305760|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACG	ATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACC
GGATTCCCGCCTGCGCGGAAATGACG

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Crispr_ID: CP031333_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_4

1523585-1523665

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTTGCGGGAATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031333_4

>merge|CP031333|4|1523585-1523665|CRISPRCasFinder
CTAGATTCCCGCTTTTGCGGGAATGATGGGATGTAGGTTTTCTTAACCCTGCGTCCTAGATTCCCGCTTTTGCGGGAATGA

>CP031333|4|4|1523585-1523665|CRISPRCasFinder
CTAGATTCCCGCTTTTGCGGGAATGA	TGGGATGTAGGTTTTCTTAACCCTGCGTC
CTAGATTCCCGCTTTTGCGGGAATGA

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Crispr_ID: CP031333_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_5

1705890-1705973

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031333_5

>merge|CP031333|5|1705890-1705973|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGGGATGTAGGTTTTCTTAACCCTGCGTCCTAGATTCCCGCTTTCGCGGGAATGACGG

>CP031333|5|5|1705890-1705973|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGG	GATGTAGGTTTTCTTAACCCTGCGTC
CTAGATTCCCGCTTTCGCGGGAATGACGG

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Crispr_ID: CP031333_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_6

1744107-1744214

Orphan

I-E

Consensus_repeat	Method
TTCGTCATTCCCGCGCAGGCGGGAATCTAGTCCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031333_6

>merge|CP031333|6|1744107-1744214|CRISPRCasFinder
TTCGTCATTCCCGCGCAGGCGGGAATCTAGTCCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCACTTCGTCATTCCCGCGCAGGCGGGAATCCAGTCCGTT

>CP031333|6|6|1744107-1744214|CRISPRCasFinder
TTCGTCATTCCCGCGCAGGCGGGAATCTAGTCCGTT	CGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCAC
TTCGTCATTCCCGCGCAGGCGGGAATCCAGTCCGTT

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Crispr_ID: CP031333_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_7

1825934-1826040

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031333_7

>merge|CP031333|7|1825934-1826040|CRISPRCasFinder
CATTCCCGCGCAGGCGGGAATCTAGGATGCGGAATCTAGAGAAACCGTTTATCCGATAAGTTTCCGTTCCGACAGGTCTGGATTCCCGCCTGCGCGGGAATGACGGA

>CP031333|7|7|1825934-1826040|CRISPRCasFinder
CATTCCCGCGCAGGCGGGAATCTAGG	ATGCGGAATCTAGAGAAACCGTTTATCCGATAAGTTTCCGTTCCGACAGGTCTG
GATTCCCGCCTGCGCGGGAATGACGGA

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Crispr_ID: CP031333_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_8

1826276-1826443

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP031333_8

>merge|CP031333|8|1826276-1826443|CRISPRCasFinder
GATTCCCGCCTACGCGGGAATGACGGGTCTTTTATAATCTTTGAATATTGCTGTTGTTCTAAGGTCTAGATTCCCGCCTGCGCGGGAATGACGGTTTAGAAGTTGCCCGAAACCTCAAAAAAAACCGAAACCGAACAAGCCGGATTCCCGCCTGCGCGGGAATGACGG

>CP031333|8|8|1826276-1826443|CRISPRCasFinder
GATTCCCGCCTACGCGGGAATGACGG	GTCTTTTATAATCTTTGAATATTGCTGTTGTTCTAAGGTCTA
GATTCCCGCCTGCGCGGGAATGACGG	TTTAGAAGTTGCCCGAAACCTCAAAAAAAACCGAAACCGAACAAGCCG
GATTCCCGCCTGCGCGGGAATGACGG

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Crispr_ID: CP031333_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031333_9

1868869-1868967

Orphan

I-E

Consensus_repeat	Method
TGGATTTCTGCCTGCGCGGGAATGACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031333_9

>merge|CP031333|9|1868869-1868967|CRISPRCasFinder
TGGATTTCTGCCTGCGCGGGAATGACGGCTCAAAAGTTACGAGACGAAAAACAACCGGAACCGGACAAGTTGGATTTCTGCCTGCGCGGGAATGACGGC

>CP031333|9|9|1868869-1868967|CRISPRCasFinder
TGGATTTCTGCCTGCGCGGGAATGACGGC	TCAAAAGTTACGAGACGAAAAACAACCGGAACCGGACAAGT
TGGATTTCTGCCTGCGCGGGAATGACGGC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031333_5	5.1\|1705919\|26\|CP031333\|CRISPRCasFinder	1705919-1705944	26	CP031333.1	86670-86695	0	1.0
CP031333_5	5.1\|1705919\|26\|CP031333\|CRISPRCasFinder	1705919-1705944	26	CP031333.1	87422-87447	0	1.0
CP031333_5	5.1\|1705919\|26\|CP031333\|CRISPRCasFinder	1705919-1705944	26	CP031333.1	2193575-2193600	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	711441-711476	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	764836-764871	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	764932-764967	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	765155-765190	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	765251-765286	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	765503-765538	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	766243-766278	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	1016549-1016584	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	1449634-1449669	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	1484180-1484215	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	2176430-2176465	0	1.0
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	2176712-2176747	0	1.0
CP031333_8	8.2\|1826370\|48\|CP031333\|CRISPRCasFinder	1826370-1826417	48	CP031333.1	1305179-1305226	0	1.0
CP031333_5	5.1\|1705919\|26\|CP031333\|CRISPRCasFinder	1705919-1705944	26	CP031333.1	620095-620120	1	0.962
CP031333_5	5.1\|1705919\|26\|CP031333\|CRISPRCasFinder	1705919-1705944	26	CP031333.1	1612682-1612707	1	0.962
CP031333_5	5.1\|1705919\|26\|CP031333\|CRISPRCasFinder	1705919-1705944	26	CP031333.1	2194245-2194270	1	0.962
CP031333_5	5.1\|1705919\|26\|CP031333\|CRISPRCasFinder	1705919-1705944	26	CP031333.1	2194891-2194916	1	0.962
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	764214-764249	1	0.972
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	1449290-1449325	1	0.972
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	1450251-1450286	1	0.972
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	1450922-1450957	1	0.972
CP031333_6	6.1\|1744143\|36\|CP031333\|CRISPRCasFinder	1744143-1744178	36	CP031333.1	1822063-1822098	1	0.972

1. spacer 5.1|1705919|26|CP031333|CRISPRCasFinder matches to position: 86670-86695, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

2. spacer 5.1|1705919|26|CP031333|CRISPRCasFinder matches to position: 87422-87447, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

3. spacer 5.1|1705919|26|CP031333|CRISPRCasFinder matches to position: 2193575-2193600, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

4. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 711441-711476, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

5. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 764836-764871, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

6. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 764932-764967, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

7. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 765155-765190, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

8. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 765251-765286, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

9. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 765503-765538, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

10. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 766243-766278, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

11. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 1016549-1016584, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

12. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 1449634-1449669, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

13. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 1484180-1484215, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

14. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 2176430-2176465, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

15. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 2176712-2176747, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

16. spacer 8.2|1826370|48|CP031333|CRISPRCasFinder matches to position: 1305179-1305226, mismatch: 0, identity: 1.0

tttagaagttgcccgaaacctcaaaaaaaaccgaaaccgaacaagccg	CRISPR spacer
tttagaagttgcccgaaacctcaaaaaaaaccgaaaccgaacaagccg	Protospacer
************************************************

17. spacer 5.1|1705919|26|CP031333|CRISPRCasFinder matches to position: 620095-620120, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgcaggttttcttaaccctgcgtc	Protospacer
****.*********************

18. spacer 5.1|1705919|26|CP031333|CRISPRCasFinder matches to position: 1612682-1612707, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

19. spacer 5.1|1705919|26|CP031333|CRISPRCasFinder matches to position: 2194245-2194270, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

20. spacer 5.1|1705919|26|CP031333|CRISPRCasFinder matches to position: 2194891-2194916, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

21. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 764214-764249, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttctac	Protospacer
*********************************.**

22. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 1449290-1449325, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

23. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 1450251-1450286, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

24. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 1450922-1450957, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

25. spacer 6.1|1744143|36|CP031333|CRISPRCasFinder matches to position: 1822063-1822098, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage