CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP033548	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-3, complete sequence	0 crisprs	NA	0	0	0
CP033547	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-2, complete sequence	0 crisprs	NA	0	0	0
CP033546	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence	0 crisprs	NA	0	0	0
CP033545	Acinetobacter nosocomialis strain 2014N23-120 chromosome, complete genome	4 crisprs	WYL,csa3,DEDDh	2	6	8
CP033549	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-4, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033545_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033545_1

103128-103272

Orphan

Consensus_repeat	Method
AGTAATAAAGTTTCATACTAAAC	PILER-CR

2 spacers

The CRISPR arrays of CP033545_1

>merge|CP033545|1|103128-103272|PILER-CR
AGTAATAAAGTTTCATACTAAGCCAGCTCTATCTAATTGATATTTATAAACTGTAAATAATTGAAGAAAAAATAAAGTTTCATACTAAACATCATTTTTTCTTCAATTTCTACTACCAGTTGAGTAATAAAGTTTCATACTAAAA

>CP033545|1|1|103128-103272|PILER-CR
AGTAATAAAGTTTCATACTAAGC	CAGCTCTATCTAATTGATATTTATAAACTGTAAATAATTGAAGA
AAAAATAAAGTTTCATACTAAAC	ATCATTTTTTCTTCAATTTCTACTACCAGTTG
AGTAATAAAGTTTCATACTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP033545.1\|AZC03774.1\|72503_73283_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP033545.1\|AZC03782.1\|103876_104095_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP033545.1\|AZC03787.1\|121647_122565_-\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
CP033545.1\|AZC03775.1\|74147_74780_-\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
CP033545.1\|AZC03786.1\|121136_121670_-\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|368021
CP033545.1\|AZC03780.1\|93842_94652_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
CP033545.1\|AZC03772.1\|69024_70368_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
CP033545.1\|AZC03773.1\|71381_72437_+\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|225726
CP033545.1\|AZC03778.1\|91254_93081_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
CP033545.1\|AZC03789.1\|123033_123504_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
CP033545.1\|AZC03776.1\|77982_78663_+\|peptidase-M15	unknown	unknown	gnl\|CDD\|311960
CP033545.1\|AZC03777.1\|88862_90068_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
CP033545.1\|AZC03779.1\|93180_93819_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319799
CP033545.1\|AZC03783.1\|104743_105433_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC03781.1\|94643_94841_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC03790.1\|124843_125666_+\|IS5-like-element-ISAba27-family-transposase	unknown	unknown	gnl\|CDD\|372577
CP033545.1\|AZC03788.1\|122580_123030_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
CP033545.1\|AZC03785.1\|105635_106458_-\|IS5-like-element-ISAba27-family-transposase	unknown	unknown	gnl\|CDD\|372577
CP033545.1\|AZC03784.1\|105429_105594_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|214643
CP033545.1\|AZC03791.1\|127131_128355_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803

Protein	Function_ID	Function_description	E-value
CP033545.1\|AZC03774.1\|72503_73283_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.69518e-36
CP033545.1\|AZC03782.1\|103876_104095_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.70165e-14
CP033545.1\|AZC03787.1\|121647_122565_-\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	1.73491e-137
CP033545.1\|AZC03775.1\|74147_74780_-\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	9.11378e-108
CP033545.1\|AZC03786.1\|121136_121670_-\|phosphatidylglycerophosphatase-A	gnl\|CDD\|368021	pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family represents a family of bacterial phosphatidylglycerophosphatases (EC:3.1.3.27), known as PgpA. It appears that bacteria possess several phosphatidylglycerophosphatases, and thus, PgpA is not essential in Escherichia coli.	5.14579e-47
CP033545.1\|AZC03780.1\|93842_94652_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	3.55993e-97
CP033545.1\|AZC03773.1\|71381_72437_+\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	1.08099e-146
CP033545.1\|AZC03778.1\|91254_93081_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
CP033545.1\|AZC03789.1\|123033_123504_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.01016e-78
CP033545.1\|AZC03776.1\|77982_78663_+\|peptidase-M15	gnl\|CDD\|311960	pfam08291, Peptidase_M15_3, Peptidase M15.	1.04819e-06
CP033545.1\|AZC03777.1\|88862_90068_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
CP033545.1\|AZC03779.1\|93180_93819_+\|HAD-family-hydrolase	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.85625e-107
CP033545.1\|AZC03772.1\|69024_70368_+\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	3.67651e-62
CP033545.1\|AZC03790.1\|124843_125666_+\|IS5-like-element-ISAba27-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.69868e-21
CP033545.1\|AZC03788.1\|122580_123030_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	3.16858e-52
CP033545.1\|AZC03785.1\|105635_106458_-\|IS5-like-element-ISAba27-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.69868e-21
CP033545.1\|AZC03784.1\|105429_105594_-\|ATP-binding-protein	gnl\|CDD\|214643	smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.	0.00220252
CP033545.1\|AZC03791.1\|127131_128355_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.19011e-101

>CP033545.1|AZC03781.1|94643_94841_-|hypothetical-protein
MLSSANIEHGIMLALIALVSIILLIIAGITALFRLKSKNKSETKDMIIISFALIGVTGLLFSCSG
>CP033545.1|AZC03780.1|93842_94652_+|glutamate-racemase
MNNNNNPIGMIDSGLGGLSLFKHIRQALPNEDIIYFADSKYVPYGDRESDWIVSRTTHLISNLVAQGKCKAIVIACNTMTAVAVETIRAQINVPLIAIEPAVKPAVGMTMSKHIAVLATATTVKGKNLKSLIETYAQDIKVSLVPCIGLAEKIETGKAHTAEVKDYLKNILAPLVEQKVDTIILGCTHYPFVSDTIQEIVGRDIQIIEPSEAVTAQLIRQLNQYHLSSESPNEGNHIIWTSSDPLEVADVTFSLLGKHLPVKSMSLLLT
>CP033545.1|AZC03779.1|93180_93819_+|HAD-family-hydrolase
MEKTLKQYQAIIFDLDGTLVDSFHFFLNVLNQLSAKYKFKTVSLHEVEYYKQLTPREIMKEMNVSRWKLPWIAKDFIRLMKERDEEIHLFEGMRDHLIELHKQGYTLAIITSNSKENCQNVLGEELCELFSHIDGGSSIFGKAKRIKRVLNILDVSKNHAIYVGDQTTDGEAAHKAGIDFAAVGWGYTSAEKLKTIQPKVVLTDLATMKEFF
>CP033545.1|AZC03778.1|91254_93081_+|DUF885-domain-containing-protein
MKNRTLHFACISVLFWMSHSSNATTPEINTNTIEKSQSKQNSDVSVRVKALNQLLQEQWEYTLKNNPETATTLGDLRYNDRWTEFSKNQIEKDKKTTQNFLKRFEAIDSTGFSATDQLNKDLMIYQLKETLKNYDLKLYEMPFNQMWGLHLQFPGFISSIPFNNTKQYQDYIARLKQIPLILDQGIQLAKQGQKDGLMPPKYLIEKVAKQINSIAAPAGKDSVFASPLKQFPNNISKAEQERLSREILQAIDQNVRPAYQKLGTFIQKDYLPHGRQHEGIWSLPNGDELYRFYVENNTTTSESPETIHQLGLKEVARIEAEMLKIAKAQGFNDLKSFQQSLKTNPAVFPKSREEILEIYRGYIAQMQPELPKLFGLLPKNKIEVLPVEQYREKEAAGAEYHQGTPDGSRPGQVYVNTGDFSERSKISMEATAYHEAIPGHHMQIDIAQNLPNLPMFRKQPNHTAYIEGWALYAEQLGKDVGFYKDPLSDYGRLSSELFRACRLVVDTGVHYKKWTRQQMIDFMREHSALDEPDIQAEADRYIAIPAQALAYKMGQLKILELRELAKHELGDRFDIKAFHDMVLNAGTLPLNILDARINNWIKEQKAAA
>CP033545.1|AZC03777.1|88862_90068_+|imidazolonepropionase
MKKLWQNCHIATMQNGQYSYIEDAAIVTEGHLIHWIGKQQQLPTDTYSETVDLNGAWVTPGFIDCHTHSVFGGNRSVEFEKRLQGVSYAEIAASGGGIASTVRATREASEEQLLNSALKRIRCMQQDGVTTIEIKSGYGLNYENERKMLRVIRQIGEKLPMTVKSTCLAAHALPPEYKDQSDAYIEHICTEMLPKLHAEGLVDAVDAFCEHLAFSPAQVERVFKTAQSLGLPVKLHAEQLSSLGGSSLAARYHALSADHLEYMTEDDVKAMAESGTVAVLLPGAFYLLRETQYPPIESLIKHGVRIALSSDLNPGTSPALSVRLMLNMGSTLFRLTPEQALAGVTIHAAQALGLEQTHGSLEQGKVADFVAWDIEHPSEIVYWLGGDLPKRVVQHGQEVIF
>CP033545.1|AZC03776.1|77982_78663_+|peptidase-M15
MKYSYLGLILLSLTACTTQTPKPTVSKHPHSLPQPSKTVVRIKQQPEDYTAWIATADHVQSVQAYKQFLKQKGLANLVPDYELLRSARDWQKCGVEPYAVPPREIWSNIVPTLSILKALVDDGVINDFEVTSAYRALSLNRCAGGADASRHVFNAALDFRIGPEQPSDLDQFNIQQTKTKLCQFWETKGQALNMGLGVYASGQIHIDSQGFRSWGPDHHYRTSICQ
>CP033545.1|AZC03775.1|74147_74780_-|maleylacetoacetate-isomerase
MKLYSYFRSSAAYRVRIGLNLKNLAYETAPVHLVKNEQQSEDYLKLNRSALVPTLIDGDLTLSQSLSILEYLDEQYPETKLLPNDVKERAKIRAFAQAIACDIHPLNNLRVLKYLKNDLNVSDEQKNYWYQHWILEGFQTLEQQLQDSNGQFCFGHEATIADCCLIPQVYNAKRFKIDLSAFPKIESIYQHCLSIPAFYNAAPEQQPDWE
>CP033545.1|AZC03774.1|72503_73283_-|IclR-family-transcriptional-regulator
MIEEKISGGVQSLEVGLSVLNALLEHNQPIILKDLSSKLEMHPAKVHRYLVSLIRMDYAKQLEDGQYALGDQAWRLGLNCIQHSDTLQLVQHLIYDLQSKIGCGIQISKWSPKGPVVVQSIESNHPISIVTKVGSIMPLVNSAAGRLFASYLPEHFIRPLLEAEWQKHQELGLNIAPHNWEAFLELKEKIRQQQMSAAKGDLLTGINAVGLPVFNSNQGIEFCIVALDSEMFLPVDPQSKIIETLKNEINLINQYIKSR
>CP033545.1|AZC03773.1|71381_72437_+|4-hydroxyphenylpyruvate-dioxygenase
MDILENPLELCGFAFIEFVSKENELDTIFETIGFSKVAKHKSKKVYLWRQGNINIILNYQPESYASFFFNEHGPSACAMGFKTRDAAKAFKKAVELGAEPMQSSVGPMELNIPAIKGIGGMPIFLVDRDIYENDFIFFDDAQRNPEGAGLKEIDHLTHNVYKGRMEYWANFYEKIFNFQEIRYFDIKGEYTGLTSKALTAPDGMIRIPLNEDSDKGNGQIAEFLADFNGEGIQHIAFICDDLISTWDKLKGLGLQFMTPPPNTYYEMLEDRLPEHGEPTDELQQRGILLDGNTKDGQKKLLLQIFSQNMIGPVFFEFIQRKDDDGFGEGNFKALFESIERDQIRRGVLEAK
>CP033545.1|AZC03772.1|69024_70368_+|MATE-family-efflux-transporter
MNQIFKLFIPMLSSNLIVVLSGLVDIAYVGHFSNDHVAALSVTLSLYTVIYVIGMGILQGVILKLSEAYGCHDLPRIRQIFIQGIWLMLCSALISIGLLYVFRDLPKLFGASEHVVSITKNCIWALVFILPAHLLMRLFTALSQVTENAHKVLLSDSLFFILKIILSYLLIYGVASFSIPPLGAIGALLATIIVRWFMLAVYYLFFLEKGYIFIEHSERSVEDSRQSLCMILKIGIPTAIMALMDVVAFCSVAILILPFGSVVSAAHQIVASTGGFMFIFPSSIASAYSILVSRSMGSGNMDEANKIARQSIWVIMAVSGSLSLCLWLERDLIVTFYSDDLAVQILAASLLLIVCMSHFLDGLMSLLTSLLRCWDVSILPMLIFLVVVLFFGLGGGWWMAYKGLHWGSHSISAMGIYGFWSMAVISYLVACVLSAFCFRFRKQLRGF
>CP033545.1|AZC03782.1|103876_104095_+|XRE-family-transcriptional-regulator
MFMSELTIQFGQLVRKYRKERNMSQEQLALLCNMDRSYLGRIERGEVNPTLEKIYDLANRLAIDPQKLLPKF
>CP033545.1|AZC03783.1|104743_105433_-|hypothetical-protein
MTLRKILMLDDNPISESIDLIKSKLKREGISAYIFLLNPQDPKFKTKNEEGNFEIDFQKIKDEVQEHHKQVKYDVVACDFNFSSEKLNGYQLIRWLINESSSSNFLFKKAKFVCYSSEINKFETHIIDNNELIRLVKLNIHSIFSRNDMPSEIPALIKKINQTFSMSDHLISRLEEMPDLKFKNVFPPFKDKTLSYISEEINRDSHQAKKFQKTFVDLTYAHILELNEQ
>CP033545.1|AZC03784.1|105429_105594_-|ATP-binding-protein
MFDLGSRDIPPEEISGSGIGLFYSRQLLNEMNAEIMFLDNNYILSGACFEVTFK
>CP033545.1|AZC03785.1|105635_106458_-|IS5-like-element-ISAba27-family-transposase
MRYQKLNRFSDSEFQRLVGVPRPVFSEMIEVLKEVESLKKKSGRPHTLAIEDQLLLTLNYLRNYSTQLELAANYHIAESNVNRTIKKVEDALMKSRRFTLPKRSITTADEQFNWVIIDATECSIERPKKNQSKFYSGKKKKHTLKAQVIYHPNSKQIIGLDISNGSQHDIKLARRTVKKFKHCKYVMTDLGYYGLEQDGFKLLMPIKKKKNLPLFDVEKKYNKMIGKIRVVIEHINSQLKTFRILSERYRNRRKRFGLRINLIAALVNRMNLQ
>CP033545.1|AZC03786.1|121136_121670_-|phosphatidylglycerophosphatase-A
MDTNTLHKPPIHFKNMSWFNRCIVFCGVGFGSGLAPKAPGTFGSAFALLFIPIWLSLGFTLSLIAILIMSLVGIYICDQTAKVLDVHDDGRIVWDEFAGQSITLLPLIFFNIMSLQWALIGFCLFRLFDVWKPWPIRVADQKVAGGFGIMLDDIIAGLWAALCIIIFITFWGVTPFK
>CP033545.1|AZC03787.1|121647_122565_-|thiamine-phosphate-kinase
MAEFSIIDQYFNRQSNSDVALGIGDDSALITPPPNQQLVICADTLVAGRHFPLETSPHAIGWKSVAVNLSDIAAMGAKPHSILLAISLPQVDHEWLKGFSQGIYDCCNQFGVALIGGDTTQGPHLTITVTAMGWIETGKAVLRSGAKVGDYVCVSGQVGDAAYGLQHLGHPLQQRLDYPTPRCQLGQELKGLASSMIDVSDGLAQDLGHILKASKVGARLVLEKLPVDPVLQQLEEQQRWQYALAGGDDYELCFTITPQNYEKLLQKQLDVKITMIGQIVEQTKLTFEHLGSDYPLQIHGYQHFA
>CP033545.1|AZC03788.1|122580_123030_-|transcription-antitermination-factor-NusB
MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKVDLSYYHELLTQVIAQHEDLDALLIPVLDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSSTLRSAEKQQAN
>CP033545.1|AZC03789.1|123033_123504_-|6,7-dimethyl-8-ribityllumazine-synthase
MAIRRIEGLLHLASEGRYAILVGRFNSFVVEHLLEGAIDTLKRHGVNEDNITVIHAPGAWELPIVAKKLATSNQFDAIIALGAVIRGSTPHFDFVAGECAKGLGVVALESSLPVINGVLTTDSIEQAIERSGTKAGNKGSEAALTAIEMVNLLKAI
>CP033545.1|AZC03790.1|124843_125666_+|IS5-like-element-ISAba27-family-transposase
MRYQKLNRFSDSEFQRLVGVPRPVFSEMIEVLKEVESLKKKSGRPHTLAIEDQLLLTLNYLRNYSTQLELAANYHIAESNVNRTIKKVEDALMKSRRFTLPKRSITTADEQFNWVIIDATECSIERPKKNQSKFYSGKKKKHTLKAQVIYHPNSKQIIGLDISNGSQHDIKLARRTVKKFKHCKYVMTDLGYYGLEQDGFKLLMPIKKKKNLPLFDVEKKYNKMIGKIRVVIEHINSQLKTFRILSERYRNRRKRFGLRINLIAALVNRMNLQ
>CP033545.1|AZC03791.1|127131_128355_+|phosphoserine-phosphatase-SerB
MREIILISFLGPDQPNQFTRLMQVLSVHSLQILDVGQAVIHNQLTLGIVVASENETATALAMKEILILAHDIGLTVRFKPISGTEYDQWVSEGGRTRYIVTALAPELTAAHLQAVTQIVSTQGFNIETVTRLSGRVDLEKDSTLPRRACVQFGLSSGPTLDAQAMRAACLLLSSELNIDVAVQEDNAYRRNRRLVCFDMDSTLIEQEVIDELALEAGVGAQVAEITERAMQGELDFQQSFRARVALLKGLDASVLPKIAERLTITEGAERLISTLKALGYKTAILSGGFQYFAEYLQAKLGIDEVHANVLDVQDGVVTGEVKGVIVDGARKAELLRELANKLGISLEQAMAVGDGANDLPMLAIAGLGVAYRAKPLVRQNANQAISSVGLDGVLYLLGMHDKDLSRA

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Crispr_ID: CP033545_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033545_2

521869-522354

Orphan

Consensus_repeat	Method
CACAGTNCCAAGNGGGTTACCNCCAGTAAC	CRT

8 spacers

The CRISPR arrays of CP033545_2

>merge|CP033545|2|521869-522354|CRT
CACAGTACCAAGCGGGTTGCCGCCAGTAGCGCCACCAGTTAAACCACCGATAATGTCAGTCACAGTACCAAGAGGATTACCGCCAGTAACACCGCCCGTCACACCACCGATAATGTCAGTCACAGTGCCAAGAGGGTTACCACCAGTAACACCACCAGTTAAACCACCGATGATATCAGTCACAGTACCAAGCGGGTTACCGCCCGTCACACCACCGATAATGTCAGTCACAGTGCCAAGAGGGTTACCACCAGTAACACCACCAGTTAAACCACCGATGATATCAGTCACAGTGCCAAGAGGGTTACCACCAGTAACACCACCGATAATGTCAGTCACAGTGCCAAGAGGGTTACCACCAGTAACACCACCAGTTAAACCACCGATGATATCAGTCACAGTGCCAAGAGGGTTACCACCAGTAACACCACCAGTTAAACCACCGATGATATCAGTCACAGTACCAAGCGGGTTACCGCCAGTGGT

>CP033545|2|1|521869-522354|CRT
CACAGTACCAAGCGGGTTGCCGCCAGTAGC	GCCACCAGTTAAACCACCGATAATGTCAGT
CACAGTACCAAGAGGATTACCGCCAGTAAC	ACCGCCCGTCACACCACCGATAATGTCAGT
CACAGTGCCAAGAGGGTTACCACCAGTAAC	ACCACCAGTTAAACCACCGATGATATCAGT
CACAGTACCAAGCGGGTTACCGCCCGTCAC	ACCACCGATAATGTCAGT
CACAGTGCCAAGAGGGTTACCACCAGTAAC	ACCACCAGTTAAACCACCGATGATATCAGT
CACAGTGCCAAGAGGGTTACCACCAGTAAC	ACCACCGATAATGTCAGT
CACAGTGCCAAGAGGGTTACCACCAGTAAC	ACCACCAGTTAAACCACCGATGATATCAGT
CACAGTGCCAAGAGGGTTACCACCAGTAAC	ACCACCAGTTAAACCACCGATGATATCAGT
CACAGTACCAAGCGGGTTACCGCCAGTGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP033545.1\|AZC03931.1\|555137_555410_+\|acyclic-terpene-utilization-AtuA-family-protein	unknown	unknown	gnl\|CDD\|377804
CP033545.1\|AZC03923.1\|526130_526772_+\|fumarylacetoacetate-hydrolase	unknown	unknown	gnl\|CDD\|182650
CP033545.1\|AZC03915.1\|501800_502157_+\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
CP033545.1\|AZC03925.1\|527748_528663_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP033545.1\|AZC03924.1\|526848_527643_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
CP033545.1\|AZC03919.1\|509259_509649_+\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC03918.1\|509007_509253_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
CP033545.1\|AZC03914.1\|501576_501693_+\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|376334
CP033545.1\|AZC05206.1\|555411_556956_+\|DUF1446-domain-containing-protein	unknown	unknown	gnl\|CDD\|377804
CP033545.1\|AZC03913.1\|499563_499740_+\|50S-ribosomal-protein-L30	unknown	unknown	gnl\|CDD\|180163
CP033545.1\|AZC03920.1\|511373_511931_+\|rhombosortase	unknown	unknown	gnl\|CDD\|274845
CP033545.1\|AZC03927.1\|541663_541909_+\|DUF2789-domain-containing-protein	unknown	unknown	gnl\|CDD\|378527
CP033545.1\|AZC03922.1\|520431_521025_+\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
CP033545.1\|AZC03917.1\|502575_503202_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
CP033545.1\|AZC03930.1\|552508_553030_+\|DUF4256-domain-containing-protein	unknown	unknown	gnl\|CDD\|339073
CP033545.1\|AZC03926.1\|530192_530816_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
CP033545.1\|AZC03916.1\|502176_502563_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
CP033545.1\|AZC03921.1\|514907_515117_-\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|312883
CP033545.1\|AZC03928.1\|544180_545014_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
CP033545.1\|AZC03929.1\|552095_552446_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314

Protein	Function_ID	Function_description	E-value
CP033545.1\|AZC03931.1\|555137_555410_+\|acyclic-terpene-utilization-AtuA-family-protein	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	4.43183e-24
CP033545.1\|AZC03923.1\|526130_526772_+\|fumarylacetoacetate-hydrolase	gnl\|CDD\|182650	PRK10691, PRK10691, fumarylacetoacetate hydrolase family protein.	2.78854e-65
CP033545.1\|AZC03915.1\|501800_502157_+\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	7.5841e-74
CP033545.1\|AZC03925.1\|527748_528663_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.76896e-12
CP033545.1\|AZC03921.1\|514907_515117_-\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|312883	pfam09526, DUF2387, Probable metal-binding protein (DUF2387). Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.	5.43918e-16
CP033545.1\|AZC03918.1\|509007_509253_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	1.30659e-15
CP033545.1\|AZC03914.1\|501576_501693_+\|50S-ribosomal-protein-L36	gnl\|CDD\|376334	pfam00444, Ribosomal_L36, Ribosomal protein L36.	1.13919e-12
CP033545.1\|AZC05206.1\|555411_556956_+\|DUF1446-domain-containing-protein	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	1.0692e-128
CP033545.1\|AZC03913.1\|499563_499740_+\|50S-ribosomal-protein-L30	gnl\|CDD\|180163	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed.	1.27286e-28
CP033545.1\|AZC03920.1\|511373_511931_+\|rhombosortase	gnl\|CDD\|274845	TIGR03902, hypothetical_protein, rhomboid family GlyGly-CTERM serine protease. This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent.	6.65171e-46
CP033545.1\|AZC03927.1\|541663_541909_+\|DUF2789-domain-containing-protein	gnl\|CDD\|378527	pfam10982, DUF2789, Protein of unknown function (DUF2789). This bacterial family of proteins has no known function.	4.85458e-27
CP033545.1\|AZC03922.1\|520431_521025_+\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.79778e-42
CP033545.1\|AZC03917.1\|502575_503202_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	6.20201e-126
CP033545.1\|AZC03930.1\|552508_553030_+\|DUF4256-domain-containing-protein	gnl\|CDD\|339073	pfam14066, DUF4256, Protein of unknown function (DUF4256). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 190 amino acids in length.	5.0876e-128
CP033545.1\|AZC03926.1\|530192_530816_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	1.2322e-59
CP033545.1\|AZC03916.1\|502176_502563_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	8.8857e-84
CP033545.1\|AZC03924.1\|526848_527643_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.20993e-23
CP033545.1\|AZC03928.1\|544180_545014_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	1.23351e-57
CP033545.1\|AZC03929.1\|552095_552446_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	3.48669e-24

>CP033545.1|AZC03922.1|520431_521025_+|HAD-IB-family-hydrolase
MNLALFDFDGTITHNDTFSLFLKFSLSRKTQILGGLRLAPYIAGYKFGWVTDKTIRTKLCQVGYIGYNADFLKYMGQEFAKTVIPTCIRENALERIHWHKQQGDQVVVVSASLGVYLESWCQSLDLDVICNQLEIDNGILTGNFINGDCGYLEKVNRIKNKYDLTQYSTIYAYGDTPNDYAMLELAHKKYYRWQEMN
>CP033545.1|AZC03921.1|514907_515117_-|YheV-family-putative-metal-binding-protein
MKKRFIAGAKCPKCEAIDRIVMLTTAEDEWIECIECGYSENRPTHVDEPETPAIPDEVGVIQFKPRRSD
>CP033545.1|AZC03920.1|511373_511931_+|rhombosortase
MYSIKKVLLVAGCISVSACLQVFPDYFIYWRESLLGEFWRLWTAHWVHVGWIHFLLNMMAFACLPFIFPHTKVWHILSLLFLLPPFISLVFYFYLPYIDAYAGLSGVLHGLYTAVALVYLQYRKERNFALLVLGLIIAKLIWENTFGQTGTAQLIGSPVLTEAHLYGAIGGAIFGGCYWLIQRFK
>CP033545.1|AZC03919.1|509259_509649_+|hypothetical-protein
MVNQLNFKLKYSRFAIIFQFFIGLSLVVLFYQLLPILWWLVTVSLLFISFIFFLKRPQLAQIAHLDQKLWSLSFHSEQTISRVEILKIIDYQIFIVVYFEGHKTLTSVIWFDQMPLSQWKQLKTLEKFY
>CP033545.1|AZC03918.1|509007_509253_+|succinate-dehydrogenase-assembly-factor-2
MTLEERKVVYRARRGLKEIDVYFDPYVKNYYLKADPAEKALFAELVEQEDPDLLDWFMEVSEPPRTELRDFIHKLKHYVHG
>CP033545.1|AZC03917.1|502575_503202_+|30S-ribosomal-protein-S4
MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREKQKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLVSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIDVDHSKLEGTFKAAPDRSDLPAEINESLIVELYSK
>CP033545.1|AZC03916.1|502176_502563_+|30S-ribosomal-protein-S11
MAKDTRTRKKVTRTVSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQVAAEVAGKAALDYGLKNLDVLVKGPGPGRESAVRALGAVGYKINSITDVTPIPHNGCRPPKKRRV
>CP033545.1|AZC03915.1|501800_502157_+|30S-ribosomal-protein-S13
MARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILATVGITETTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPIKK
>CP033545.1|AZC03914.1|501576_501693_+|50S-ribosomal-protein-L36
MKVQASVKKICGSCKVIRRNGVIRVICSAEPRHKQRQG
>CP033545.1|AZC03913.1|499563_499740_+|50S-ribosomal-protein-L30
MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
>CP033545.1|AZC03923.1|526130_526772_+|fumarylacetoacetate-hydrolase
MKTRPSKIVCVGRSYADHVKELNNAMPGRPVLFIKPPSSLIGLDEGISWNPAWGSCHFECEFVLRIDQPLKGETDPQKVLQAIGAVTLGLDLTLRDLQNELKDKGQPWERAKAFDGSCVLADWVDVSEITNWEETKFTFHINDELRQDGNTALLMFNIANLLTDINQVFSLEPGDVIMTGTPAGVGPLHAGDQLKMTLKGATQDFIWETFVKA
>CP033545.1|AZC03924.1|526848_527643_-|AraC-family-transcriptional-regulator
MKKSAQRVQDFQEIPAHNAIPDLLWFRIRNAPAETVYPQHVHAWGEFIYAFSGVLEVNIDQINYLTPPPYGIWLPPYTKHSGINRNQVTHATLYIHESLCQKLPQKAGILLTSPLVPALLDHLRQNPQDETRVEYIRLLQVLLDQLIKADLVGSYLPTTNHPALAKIINDLHQCPADNSTLQELAERNNMTERTLARYSQKELGMSLHEWRQRLKVMKAMTMLNQGKTIESIAFDLGYASASAFIYMFKRWMGFTPDQFRKLYQ
>CP033545.1|AZC03925.1|527748_528663_+|DMT-family-transporter
MEERKNLDARASALMVLLCMVLGLQQVVLKIAAPDISPIMQIALRSGLSAVLVLPLLWRDHSIHLFSYQQCKAGALVALFFSLEFYFVTEALKFTSTSHTVVLLYTAPIFVALGLHWKFPTERLNRAQWGGIALAFMGIIITFYPTTTAINAPAIAQVLLGDLYALMAGLAWALSTIIVRLSSLAQAPATQTLFYQLTGCFILLISIAFLTGQTTIHLTALTILSLSFQTLIVSFASLLLWFWLLRNYLASRLGVFSFLTPLFGVLFSVLLLNEKLEIKFIFGSILVLSGIVMMSLKQGQPNKG
>CP033545.1|AZC03926.1|530192_530816_+|NAD(P)H:quinone-oxidoreductase
MFFLTKFMKPMQPYILVLYYSKYGSTKEMAHLIANGVESVGISVKIRTVPNIATVVTEAEPSIPEEGDIYCTLEDLANCAGLALGSPTRFGNMASEMKYFWDQTTNLWLNGALHDKPACVFTSSGSMHGGQESTLLTMLPPLFHHGMMILGLPNSIPALSNTKTGGTPYGASHVSGPRHDQSLSQDEKLLCEAQGRRLGEMVKKLCL
>CP033545.1|AZC03927.1|541663_541909_+|DUF2789-domain-containing-protein
MFEQQPTLQLLFEQLGLDADDVSIENFIKTHQLPAEQKLHEASFWSQGQSDFLKSHWEKDDEWIVVIDELNEQLHEDSVKK
>CP033545.1|AZC03928.1|544180_545014_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MTNAPKPEQDLTHNEHSFDGITFEVVEEEDNPEGQKVKRRGIYLWPNLITTAALLSGFYSIIASMNGEFTQAIYAIFLAALFDGLDGRVARAIGAQSAFGEQYDSLSDLLAFGVAPAMLMYSWSLHDLGRIGLACCFVYTACAAFRLARFNVQIGVVDKRYFIGIASPLAAIIIISLVWVARDYPFIFDLRDIAIQVINAVIMVVVGLLMISNIKYYSFKQMDRKRVPFVVMLPVVLIFAAITYNIPMGILIVSIIYALSGFVTTLLAKKNNETIKT
>CP033545.1|AZC03929.1|552095_552446_+|GFA-family-protein
MEYKGSCHCGQVKFAAEGELTEVLSCNCSICQKKGSLLWFLPINQVKVTLDTPDNLANYTFNKHVINHHFCKKCGIHPYAQGIDNQGNSIFAINVRCIDGIDLDKIKINYFDGRSV
>CP033545.1|AZC03930.1|552508_553030_+|DUF4256-domain-containing-protein
MLELLKARFEKNTHRHKEVDWSNVRDKLIKSPDKLWALQEMENTGGEPDVIVFDQQKDQYLFVDCSPETPKGRRSLCYDREALESRKDHPPKNSAIDLANEMGVELLTEEQYRQLQQIEEFDLKTSSWLATPVEIRKLGGALFADRRYGRVFIYHNGAQSYYAVRGFRCCLRI
>CP033545.1|AZC03931.1|555137_555410_+|acyclic-terpene-utilization-AtuA-family-protein
MRNRMANNQQDDHRVVKIGCASGFWGDTNTAAFQLVHLTDINYLVFDYLSEITMSIMAKAKMVEPKHGYALDFVSRVMAPLLKKIAEKKD
>CP033545.1|AZC05206.1|555411_556956_+|DUF1446-domain-containing-protein
MISNAGGVNPLACRDALQKIIKEYGLDLKVAVVLGDDLLPKHEQLKSQNIQEMFSGEALPEQIASSNAYLGAVAIRDALDLGADIVITGRVVDSAVVLAPLLHEYQWPLDDYDKLAQGSLAGHVIECGAQCTGGNFTDWQLVQGFDNMGFPVVEVSEDGSFIVTKPQGTGGLVSTATVAEQIVYEIGNPQAYLLPDVIADFSHVHLEQVGEHRVRVTGAKGQAPTAQYKVSATYPDGYRVLVSFLIAGREAPQKAQVIADAILTKCERVLAMRSVPPFNEKSVEILGIESTYGEHAQTLNSREVVVKIAVKHMLKEACMFFASEIAQASTGMAPALAGIVGGRPKASPVIKLFSFLIDKNQVSVEIDFEGKRYPVEIPQEVFTEQLPTLKAGENAIYQGDEIEVPLIEIAHARSGDKGNHSNIGVIARKADYLPWIRAALTEQSVASYMQHVLNAEKGRVIRYELPGLNALNFMLENALGGGGVASLRIDPQGKAFAQQLLDMPVKVPAHLLEK

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Crispr_ID: CP033545_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033545_3

2090454-2090554

Orphan

Consensus_repeat	Method
TGCGAAGCTTCAGTCGCTTCTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033545_3

>merge|CP033545|3|2090454-2090554|CRISPRCasFinder
TGCGAAGCTTCAGTCGCTTCTCAGAACAAAGCGTTGCTTTGATTCACCCTCTTAACTCGAGCATAGTTCTCGTCTTCTTGCGAAGCTTTAGTCGCTTCTCA

>CP033545|3|1|2090454-2090554|CRISPRCasFinder
TGCGAAGCTTCAGTCGCTTCTCA	GAACAAAGCGTTGCTTTGATTCACCCTCTTAACTCGAGCATAGTTCTCGTCTTCT
TGCGAAGCTTTAGTCGCTTCTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP033545.1\|AZC04466.1\|2071549_2071735_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC05250.1\|2058560_2058986_-\|BLUF-domain-containing-protein	unknown	unknown	gnl\|CDD\|198102
CP033545.1\|AZC04467.1\|2082121_2082367_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
CP033545.1\|AZC04477.1\|2103778_2104918_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|183114
CP033545.1\|AZC04463.1\|2063770_2064412_+\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
CP033545.1\|AZC04462.1\|2061397_2061787_+\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04461.1\|2059233_2059497_+\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04468.1\|2089587_2090379_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
CP033545.1\|AZC04464.1\|2066006_2067179_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|238383
CP033545.1\|AZC04472.1\|2095431_2096490_-\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
CP033545.1\|AZC04475.1\|2101308_2102271_-\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|238958
CP033545.1\|AZC04473.1\|2097332_2098736_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
CP033545.1\|AZC04476.1\|2102633_2103620_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|237261
CP033545.1\|AZC04460.1\|2051926_2053270_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
CP033545.1\|AZC04478.1\|2104965_2105718_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|227711
CP033545.1\|AZC04465.1\|2067239_2068136_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176148
CP033545.1\|AZC04470.1\|2091090_2092230_-\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|350353
CP033545.1\|AZC04469.1\|2090573_2091119_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224172
CP033545.1\|AZC04474.1\|2100275_2101295_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
CP033545.1\|AZC04471.1\|2092242_2092890_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810

Protein	Function_ID	Function_description	E-value
CP033545.1\|AZC05250.1\|2058560_2058986_-\|BLUF-domain-containing-protein	gnl\|CDD\|198102	smart01034, BLUF, Sensors of blue-light using FAD. The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.	4.18166e-35
CP033545.1\|AZC04467.1\|2082121_2082367_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	7.37382e-10
CP033545.1\|AZC04477.1\|2103778_2104918_+\|transcriptional-regulator	gnl\|CDD\|183114	PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional.	6.1195e-09
CP033545.1\|AZC04463.1\|2063770_2064412_+\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	1.05043e-123
CP033545.1\|AZC04472.1\|2095431_2096490_-\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	2.81892e-179
CP033545.1\|AZC04464.1\|2066006_2067179_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	0
CP033545.1\|AZC04468.1\|2089587_2090379_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.2494e-22
CP033545.1\|AZC04469.1\|2090573_2091119_-\|hypothetical-protein	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	5.3682e-11
CP033545.1\|AZC04473.1\|2097332_2098736_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
CP033545.1\|AZC04475.1\|2101308_2102271_-\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|238958	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).	1.46231e-132
CP033545.1\|AZC04476.1\|2102633_2103620_+\|lipoyl-synthase	gnl\|CDD\|237261	PRK12928, PRK12928, lipoyl synthase; Provisional.	0
CP033545.1\|AZC04460.1\|2051926_2053270_+\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.19409e-98
CP033545.1\|AZC04478.1\|2104965_2105718_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|227711	COG5424, COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism].	5.94038e-18
CP033545.1\|AZC04465.1\|2067239_2068136_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176148	cd08459, PBP2_DntR_NahR_LinR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold. This CD includes LysR-like bacterial transcriptional regulators, DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. DntR from Burkholderia species controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The active form of DntR is homotetrameric, consisting of a dimer of dimers. NahR is a salicylate-dependent transcription activator of the nah and sal operons for naphthalene degradation. Salicylic acid is an intermediate of the oxidative degradation of the aromatic ring in soil bacteria. LinR positively regulates expression of the genes (linD and linE) encoding enzymes for gamma-hexachlorocyclohexane (a haloorganic insecticide) degradation. Expression of linD and linE are induced by their substrates, 2,5-dichlorohydroquinone (2,5-DCHQ) and chlorohydroquinone (CHQ). The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.53592e-83
CP033545.1\|AZC04470.1\|2091090_2092230_-\|TIGR01244-family-phosphatase	gnl\|CDD\|350353	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982. This subfamily is composed of bacterial tyrosine-protein phosphatases similar to Neisseria meningitidis NMA1982, which displays phosphatase activity but whose biological function is still unknown.	1.68135e-39
CP033545.1\|AZC04474.1\|2100275_2101295_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	1.74745e-166
CP033545.1\|AZC04471.1\|2092242_2092890_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	4.52589e-79

>CP033545.1|AZC04468.1|2089587_2090379_-|sulfite-exporter-TauE/SafE-family-protein
MLLLVVEGIVIGFLLGLTGAGGGILAVPALMTSQGWTVAQAAPIGLLAVALSTLIGTIEGLFKKIVRYRAAIWIALIGAPMAHIGILIANAISPVWLMLMFSLVMFTVGYRLISNRVSDFHNPPCQVNPSTGRFIWNFKTGGVLASIGIIAGLLTGMLGVGGGFVIVPALRKVTNLDMHSIVATSLMIIFLISGISIVMHIAEGFHYPVAITSAFALACAFGMLLGRQAIRFIPASIVQKVFALMVFAVAIYMVIKIVNLTNI
>CP033545.1|AZC04467.1|2082121_2082367_-|ferredoxin-family-protein
MTFIFKEVQHRTVAPVIIDEDKCIADKGCTVCVDVCPMDLLAIDPTTQKAYMQFDECWYCMPCEKDCPTDAVKVNIPYLLK
>CP033545.1|AZC04466.1|2071549_2071735_-|hypothetical-protein
MLKVIGALLILGSFTCYLLIGNEEKTETKSSHMLKEAEQSIKNAELSIQKAKQNIPTASYK
>CP033545.1|AZC04465.1|2067239_2068136_-|LysR-family-transcriptional-regulator
MFDLDSRLLNIFYHIYRFKSVSMAADAIGLTQPSVSNGLNKIRQHFNDPLFIRVGNEMIPTELAKQIFPLISEVIDKVESINNFNVNFDPLTSDQLFTIAMTDVSHLVLLPQLTNYLKEKAPLIRLNIRPITPETSYQMANGEIDLAIGFLPQLEEGFYQQKFFRQHYVVISSKSHPRLDPNNFTLEDYMREYHIDIDAGIGHYHIKNELQNKGLDRNILIRLPSYLGVGLVVQETDAIATVPYYLSQVLLVRENLQILPAPLDFPTYDVKQHWHMSCHHKSSHKWFRQTCYELFKTA
>CP033545.1|AZC04464.1|2066006_2067179_+|acetyl-CoA-C-acyltransferase
MSSIVIVSGSRTAMGGFQGSLSSLTAPELGAAVIRESIQRAGVKPEQVDEVIFGCVLSAGIGQGPARQAMRKAGVPDHVGAVTINKLCGSAMKAVLMASDTLKAGSANIIVAGGMESMTNAPYILPKARGGYRMGHGEIKDHMFLDGLEDAETGRLMGSFAQDMANTKGFTREQMDDFAISSLKKAQTAITEGYFKEEIVPVEVKTRKGVEVVDQDEQPLKANLEKIPTLRPAFSKDGTITAANSSSISDGAAALVLTTEEYAQSHGLNTLAKIVATSTHSQHPSEFTIAPISAIQKVLERAGWSVDEVDAWEINEAFAMVAMAPIHELGIDEAKVNIHGGACALGHPIGATGSRIILSLIYALKRLGKKKGVAALCIGGGEATAVAIEI
>CP033545.1|AZC04463.1|2063770_2064412_+|CoA-transferase-subunit-B
MAWSRNEMAQRAAKELEDGFYVNLGIGLPTLVANYIPENINVWLQSENGLLGIGEFPTEETVDADLINAGKQTVTARPGAAFFSSSESFAMIRGGHVNIAILGAMEVSEKGDLANWMIPGKKVKGMGGAMDLVVGVQKVVVLMEHCAKDGTPKIVKSCSLPLTGKGVVHRVITDLGVMDITPQGVELIELAKDVTLEQIQAATGVEFYKTLVA
>CP033545.1|AZC04462.1|2061397_2061787_+|hypothetical-protein
MMWIKFILYPLGMFVLWQTIFLIEQVSLESLNAPKLLMTIITLIINWGMQILIGYKIAQLAPKHKLIVSTTYIIFFTFMITIYSITILLEGLKVAPQKIWMCYLFFHLIGMFIYFANNKDEFCWNDLLK
>CP033545.1|AZC04461.1|2059233_2059497_+|hypothetical-protein
MENHEIILQDEHHKQLKIVKVQDVRFDTHTLNHSYQWLWVFDHSSEFFPFELWDQLDSATVHQKLKLNNQVFKIIKILTQKTKLRYS
>CP033545.1|AZC05250.1|2058560_2058986_-|BLUF-domain-containing-protein
MYASKTNSEHSQIKQDLIDILTEAVKFNSQNDITGVLYYGNGYFLQYLEGEKEQVETLFYKSILKDSRHQNCEIIFLEPSEQRLFKHWSMKFAPINTKIKDFFFHHHVDEFNPYLLNTNSIPSFIELLVDQPNLKADQYQV
>CP033545.1|AZC04460.1|2051926_2053270_+|MFS-transporter
MKTIDANTIINREKLSPLQWIVFILGFCVFFCDGLDTGIIGFVAPALLDDWGITKPQLAPVLSAALVGMSIGAIISGPLADKFGRKGVIVFTSLLFSIFTILCGFANSTQDLMIYRFITGVGLGAAMPNISTIVSEYMPVKRKAFLTGLAGCGFMLGISCGGVLSAYLLESYGWAKVIIIGGSIPLILVVALLLKLPESTQYLITRHQQDKAQRILENIQGHSFQEPVKLILAQAENPSDENPVKVVLGKYLWSSSMLWICCFTSLLVFYLLTSWMPTILKTAGFNTQQFSLIAAIFPFGGVIGATILGWYMDKLNPTTVIKYSYLIAFSLFIVAGLVSSNIFLLGLTIFLIGALLAGAQSSLLPLAAMFYPAVCRAVGVSWMHGIGRIGAILGAFFGSLIFTFNLSLSGIFFILALPTFISFIALSLKVIYEKSKHKQVLKLEESL
>CP033545.1|AZC04469.1|2090573_2091119_-|hypothetical-protein
MGLQKKAWFKVVNDENAALIETNFDMLHVVPPQQAPDFIRASILTDEAGWVSVNPQTLQHTQHANIFALGDVMNAPNAKTAAAARAQAPIVAVNVIAQLKGEPDFCEYNGYGSCPLTVERGKIVLAEFGYGGKLLPSFPKWVIDGQKPSRLAWLLKEQILPPIYWQGMLKGREWMVKPERG
>CP033545.1|AZC04470.1|2091090_2092230_-|TIGR01244-family-phosphatase
MELKRVNQDFYVAGQITVDDIAKIADQGIKTLICNRPDGEGADQPNVIEIEEAAQRHSLKVIYQPVTSGKITDQQVTEFKQLYQNAQKPVLAYCRSGMRAISLWALAEVAPQDAALLVETGNKLGFNLKGLVPRILKHDYEPATIPCYSVVIVGAGAAGISVASSLLSREPHLDIVIIDPADTHYYQPGWTMVGGGIFKPQVTARSMASVIPSKVKWMKAAVAGFDPEHNQVILEGCQPIQYKALVVCPGLKLNWHGIEGLVETLGKNGVTSNYRYDLAPYTWELVQQLNGGKAIFTQPPMPIKCAGAPQKAMYLSADYWLKQGKLKDISIHFYNTGAVLFGVKEYVPALMQYVEKYGSELHFNHQLVKVDGPAKKSMV
>CP033545.1|AZC04471.1|2092242_2092890_-|MBL-fold-metallo-hydrolase
MLGCEETREAVLIDPVASDIEIYAKELEQHQFTLIYTLDTHVHADHITAANLLRERFHCKSVLHRNSEVSCGDILITDGCMLKVGNLSIEARYTPGHTNACTSYLVGNMIFTGDALLIDGCGRTDFQQGNAGTLYDSIHKQLFSLPDETIVYPGHDYKGRLSSTIGYERLNNSRLGQNRSREDFIELMNNLNLPYPKQIDKALPANQACGSISQS
>CP033545.1|AZC04472.1|2095431_2096490_-|2,3-butanediol-dehydrogenase
MKAARFYDRGDIRIEDIPEPEVTPGTVGIKVAWCGICGTDLHEFMEGPIFIPPCGHPHPISGESAPITMGHEFSGVVYAVGEDVDDIEIGQHVVVEPYIVADDVPTGPGDNYHLSKNMNFIGLGGRGGGLSEKIAVKRRWVHPISNKIPLDQAALIEPLSVGHHAFVRSGAKAGDIALVGGAGPIGLLLSAILKAKGLKVIITELSAKRKEKAKESGVADYILDPSEVDVVSEVMKITNGDGVDVAFECSSVNKVLDTLVAAVKPTCVIVIVSIWSHPASINVHSVVMKELDVRGTIAYVNDHQETIKLVEEGKINLEPFITQRIQLDDLISQGFETLIHNNESAVKIIVHP
>CP033545.1|AZC04473.1|2097332_2098736_-|dihydrolipoyl-dehydrogenase
MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIVEEQHLGGICLNWGCIPTKALLAGAELATQFKHAGQFGFQVSQLDFDIQKLVQHSRQVSAQLVQGIDYLLKKNQVTVFNGRAQLTAKEKLEVTDAQGNSQDLSAPHIILATGAKARHVPQLPVDGTYVWSYKEALVPEQLPKSLLVVGSGAIGSEFASLYQDLGCQVTLIDLAKQILPTEDAEVAQFVRKQFEQKGMKVLTDAVVQSIQIENGQVHCVVETANDVQTLVFERVLSAIGVQPNTTGLGLERLGVELNPQGFVAIDDYCKTNVAGLYAIGDVAGAPCLAHKASHEAMICVEKIAGVANVHSLDRSQIPGCIFTHPQVASIGLTENVAKAQNLPVRIGKFSLTANGKALAIGDASGFVKTVVHAETGELLGAHMVGHEVTEHIQGFAIAKYLEATDESLAQVIFPHPTLSEAMHESILASMQRAIHM
>CP033545.1|AZC04474.1|2100275_2101295_-|alpha-ketoacid-dehydrogenase-subunit-beta
MPNKSFRNAIKEAIESEMRRDPTVFVVGEDVRGGHGGKNTEENQLEGFGGVLGVTKGLWTEFGSERVIDTPITESAIIGMAAGAAATGLRPVADLMFMDFYGVCHDMLYNQAAKFRYMFGGKAKAPMVVRGMIGAGFSAAAQHSQSPYNVFAAVPGLKVVVPSSPYDVKGLLIQAIRDDDPVVFCEHKMLYDIKGEVPDDAYTIPFGIANYTREGTDVTIIALGLMVHRANEVADKLAKGGISVEVVDPRTISPLDEEGILESVASTGRVVIVDESAARCGFGHDVAALIAQKGFHYLKAPVELVTPPHTPVPFSPVLEKEWIPSIERIEQAVRKTLEA
>CP033545.1|AZC04475.1|2101308_2102271_-|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MQLTEEQLLAAYKRMRDIREFEDRLHEENTNGDIPGFIHLYSGEEAVAVGICENLTDKDYITSTHRGHGHCIAKGCDIHAMMLEIFGKDDGLCRGKGGSMHIADLDKGMLGANGIVGGGPPLAIGAALTAKTLKTGGVGLSFTGDGGSNQGLTFEAMNMAVVLKLPVIFVFENNGFGEGTGHDYAVGSKDIAGRAAGFGLPAVKVDGTDFFAVYEAAQTAIERARRGEGPSVIETITNRFYGHFEGDPGLIRSKEEVEFIKENKDPLKIFREKVKGKIDEAKLDEIDAASKANVDDAVAKARAAAYPKPEQLLTDVYVSY
>CP033545.1|AZC04476.1|2102633_2103620_+|lipoyl-synthase
MDLKRQIETGIKLKGIDKVSRIPIKILPTEELPKKPEWIRAKITDFEEIQRIKNLLRQQKLHSVCEEAACPNLPECFGGGTATFMIMGDICTRRCPFCDVAHGRPMPLDENEPKHLAETVANLNLKYVVITSVDRDDLHDGGAAHFVKCIEEIRNHCPDTLIEILVPDFRGRLETALSTLSLSPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKRFKKYCPDIKTKCGLMVGLGEIEAEVIALLNDLKDHDVDLVTIGQYLQPSKSHAPIHRFVNLQEFERYTQHGKRLGFKNIWSAPMVRSSYFADRQYFGEPAPKPFSREDVLS
>CP033545.1|AZC04477.1|2103778_2104918_+|transcriptional-regulator
MDMSKQLLLPSTDNLPSFFRPETISETPCLGKKPSLDLDAAPIFDLDQEWQHSLFGRSIQECHRNLMHIAEDADMAIGVTDPHGTLLWTWSSIPMRSSAEQVHFVEGGQWSTQAVGQNAIGLALNTHSASCVYSHENQMNSVRDWVCYAAPITDANTGQFYGIMNLSTKYQKHNSLGILAVERCADIVKQAIQLHQKNILYIKALGTPKVQYNQHGLTLTQRQIEILCLLALCPEGINLEELHYALYGDRPVSTTTLKAELSQLRNLIPDVIESRPYRLNCEIQCDFLMAEQALNLGFTATTLTLYRGSFLAKSESPFLCAWRDCFDARLSHVIYQIDDVDQLLRVVSRVPDRVDAVERLLELLPEETPYRAKLLKLLE
>CP033545.1|AZC04478.1|2104965_2105718_-|iron-containing-redox-enzyme-family-protein
MTALNQYGMSLEITAHNEWSQRFWDDLLPVKERVSKHPFFTEMANGGLSLESFRYALLNFYPLVAHFPSYMAGALAKATAFAEPGVTETRDWLIQNIKVEERHLQWYRDWAKGFGLTVEQLDSVRPPAAMNAVNHFLWNMSHRGNLAECLAATNLAIEWATGDWSIQVYKGIHAYTDHPEVTIDKRSLAWLRAHAHYDDLHPYEAMELIKRLSNDRPDWQQKAFHAAEEGLRYYELALDDCYRVQLQASA

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Crispr_ID: CP033545_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033545_5

3239165-3239247

Orphan

Consensus_repeat	Method
GTCTATTACATCATGATGTAGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033545_5

>merge|CP033545|5|3239165-3239247|CRISPRCasFinder
GTCTATTACATCATGATGTAGTTGTTCAGCGTTTGAACATGAGCGCAAAAATGCGCTGATGTCTATTACATCGTGATGTAGTT

>CP033545|5|3|3239165-3239247|CRISPRCasFinder
GTCTATTACATCATGATGTAGTT	GTTCAGCGTTTGAACATGAGCGCAAAAATGCGCTGAT
GTCTATTACATCGTGATGTAGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP033545.1\|AZC04905.1\|3246544_3246754_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
CP033545.1\|AZC04906.1\|3248605_3248908_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC05297.1\|3246127_3246310_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|308117
CP033545.1\|AZC04895.1\|3198664_3198973_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
CP033545.1\|AZC05296.1\|3236000_3237176_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176223
CP033545.1\|AZC04910.1\|3251375_3251573_+\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04897.1\|3212744_3213461_-\|response-regulator	unknown	unknown	gnl\|CDD\|236738
CP033545.1\|AZC04899.1\|3216883_3217018_+\|preprotein-translocase-subunit-YajC	unknown	unknown	unknown
CP033545.1\|AZC05295.1\|3210740_3211040_+\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC05294.1\|3208189_3208669_-\|NADH-quinone-oxidoreductase-subunit-A	unknown	unknown	gnl\|CDD\|180638
CP033545.1\|AZC04903.1\|3243016_3243358_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04900.1\|3223431_3224361_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176124
CP033545.1\|AZC04908.1\|3250264_3250672_+\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04896.1\|3198972_3199494_-\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|235844
CP033545.1\|AZC04898.1\|3213457_3213664_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04904.1\|3246314_3246548_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04907.1\|3249279_3249627_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379100
CP033545.1\|AZC04902.1\|3241621_3241864_-\|hypothetical-protein	unknown	unknown	unknown
CP033545.1\|AZC04901.1\|3230647_3231877_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
CP033545.1\|AZC04909.1\|3251043_3251367_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033545.1\|AZC04900.1\|3223431_3224361_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176124	cd08433, PBP2_Nac, The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold. The NAC is a LysR-type transcription regulator that activates expression of operons such as hut (histidine utilization) and ure (urea utilization), allowing use of non-preferred (poor) nitrogen sources, and represses expression of operons, such as glutamate dehydrogenase (gdh), allowing assimilation of the preferred nitrogen source. The expression of the nac gene is fully dependent on the nitrogen regulatory system (NTR) and the sigma54-containing RNA polymerase (sigma54-RNAP). In response to nitrogen starvation, NTR system activates the expression of nac, and NAC activates the expression of hut, ure, and put (proline utilization). NAC is not involved in the transcription of Sigma70-RNAP operons such as glnA, which directly respond by the NTR system, but activates the transcription of sigma70-RNAP dependent operons such as hut. Hence, NAC allows the coupling of sigma70-RNAP dependent operons to the sigma54-RNAP dependent NTR system. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.5357e-43
CP033545.1\|AZC04895.1\|3198664_3198973_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	2.82714e-38
CP033545.1\|AZC05296.1\|3236000_3237176_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176223	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.4704e-179
CP033545.1\|AZC04896.1\|3198972_3199494_-\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	3.9395e-49
CP033545.1\|AZC04897.1\|3212744_3213461_-\|response-regulator	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	5.91814e-89
CP033545.1\|AZC04907.1\|3249279_3249627_+\|hypothetical-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.79769e-07
CP033545.1\|AZC05294.1\|3208189_3208669_-\|NADH-quinone-oxidoreductase-subunit-A	gnl\|CDD\|180638	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated.	7.92228e-40
CP033545.1\|AZC04901.1\|3230647_3231877_-\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	4.08607e-168
CP033545.1\|AZC05297.1\|3246127_3246310_-\|hypothetical-protein	gnl\|CDD\|308117	pfam02318, FYVE_2, FYVE-type zinc finger. This FYVE-type zinc finger is found at the N-terminus of effector proteins including rabphilin-3A and regulating synaptic membrane exocytosis protein 2.	0.0077806

>CP033545.1|AZC05296.1|3236000_3237176_-|zinc-binding-dehydrogenase
MKSVLCHQATLQVVDQPNLTPAKGQVLLEVVRCGICGSDLHMQHHCDHMHDLAARVGFNGLAKSTDPFVLGHEFCGKVLDYGPKTRHKFKADTLVCAMPLLNVDQHGYLSTGLSPNASGGYAEQVLAQSSLIFEVPNGLDADSAAMTEPMAVALHAVRRSRVKTSEPAIVVGCGPVGLGVILMLKAAGVKTVVASDFSPNRRKLAEQCGADIVVDPKETSPFANWKEFGLLGNVSDAINMGMGLFDKLQATRLPWWHGWRMIDKLGALPKRPVIFECVGVPGVLQQIIEGAPLFSRIVGVGVCMQSDKIEPALAINKELEIQFVLGYTPLEFRDALHMIAEGKVNCSPLITGVVGLEGVTSAFEALRDPEQHAKILIDPKRSGSDIQLMKH
>CP033545.1|AZC04901.1|3230647_3231877_-|CoA-transferase
MGALQGIRVLDLSRVLAGPWCGQILADLGAEVIKIERPRVGDDTRMWGPPWMPDQDGNMTRESGYFQCTNRNKYSVAVDITTPEGQALIYEIAKTADVVIENYKTGSLAKYGLDYASLSELNPNIVYCSITGFGQDGPRAEEPGYDFIIQGMSGLMSITGEPDDAAGGGAQKVGVAVVDIQTGLYSTIAIQAALIARSHTGRGQYIDMSLLDVQVAALANQGMNYLASGKAPQRMGNQHPSIVPYQTFKAKDKEFIIACGNDKQFKDLCIAIGYPELLENEKFVRNQDRVKYRNELIPLLSEHFLQKTAKEWVDMIHALKVPVGVINSIEDALAEPQIVHRNLVVNIPHRLNENFQTIGSPIKLSDTPVEYHHAPPELCEHTAQILSRFKTAEELAALKEKGIIDGKIA
>CP033545.1|AZC04900.1|3223431_3224361_+|LysR-family-transcriptional-regulator
MEIKQIKYFLTVVESGSIGKAAQKLDVGASAISQQISKLEQELSIRLLQRNAFGVTPTPAGLAFLKHSQLILRQVNFAIDAAHPARLSGHVSLGFPPTITALIGIPLMKLMSERYPDIRLEIVETLSGNLIQSINSRQLDIAIIFTNEIDKQWSIQPLVREQMYLMARKEVLEKYGLSECIKSGIVQSQQIGDIPLVLPRQRHSLRKLLEHKIGQLNVVYEIDGLHLLMDSLIHLDLASVRPGSACLQEYKHKLQLLKVVDPEVERINYLVSLAEEELSPAALAAKSAIKACVKELIQNQIWPCSEIIV
>CP033545.1|AZC04899.1|3216883_3217018_+|preprotein-translocase-subunit-YajC
MFSHLSHNYMLGVGILIFAFIFFYTPMVYAFFKIRKQQRKQNKL
>CP033545.1|AZC04898.1|3213457_3213664_-|hypothetical-protein
MTCKNNKQISKILENSKVNKMQQNMVVMYQFGERLLVYNVNVCILQMINECICKIFKMHVMRFIGAMI
>CP033545.1|AZC04897.1|3212744_3213461_-|response-regulator
MSQEEKLPKILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETNGL
>CP033545.1|AZC05295.1|3210740_3211040_+|hypothetical-protein
MRHIESYIQKHPDADNAIFDLRDVYEIFRQDFASTTTNLEGILHIADSYRVETLNGDQPLIQKYQIDAKNNSLLIDFNTDALNSLRSGKPILEPDATQL
>CP033545.1|AZC05294.1|3208189_3208669_-|NADH-quinone-oxidoreductase-subunit-A
MLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSWAPADRRKLAGEKIKVGSPTMDIAEITRFNSIEELVTDPTGQIPAQSSGRVKSKTTPALSSEKE
>CP033545.1|AZC04896.1|3198972_3199494_-|NADH-quinone-oxidoreductase-subunit-J
MMWPFYLMALVAIVSTVRVVTNTNPVHALLSLIVSLLAVAGIFMIVGAPFAGALEIIVYAGAIMVLFVFVVMMLNLGQHTVEQERKWLSSDAWAYPALMSFLLGLLLVWMLGGEYTTISAPLGAQVIGPKVVGQALFTHYLLLVEVAAMLLLAALVAAYHLGKREPGAEEEKE
>CP033545.1|AZC04895.1|3198664_3198973_-|NADH-quinone-oxidoreductase-subunit-NuoK
MGQIPLEHGLIVATILFALGFYGVMVRRNLLFMLMSLEIMMNAAALAFVLAGSVWAQPDGQVMFILILTLAAAEACIGLAIVLQFYHRFHHLDVDAASEMRG
>CP033545.1|AZC04902.1|3241621_3241864_-|hypothetical-protein
MRKDLSNSPIQQKAASLLGACAVSEIRTLIGNFESLKDAFEKMATIKRLEEYEIISIILIDTDNSEQLGEDFDWENESHV
>CP033545.1|AZC04903.1|3243016_3243358_-|hypothetical-protein
MQQASIFKGPTELPESDNTLVVFFKDGSMSSPVRYCSSCEEWHSPAGDLRESNIHQWAYKDEFYEALNIPKFEGERTEKESNAGKDRAAEMLFKLVLLSALSSATKQKSHSFF
>CP033545.1|AZC05297.1|3246127_3246310_-|hypothetical-protein
MPTQEIALSDKEKEIVQEVQKALGLPTIEETIEYLARERIQELLGKLAGQELRKTNRHLF
>CP033545.1|AZC04904.1|3246314_3246548_-|hypothetical-protein
MSLKKQKRDNRYNVNLTNDESDLFKIVSRLTGVNPGVIMRQLVMKQALALLIAEDIQDNFSLDSYLKKGASDHLSRS
>CP033545.1|AZC04905.1|3246544_3246754_-|ribbon-helix-helix-protein,-CopG-family
MSTETSPSNRSRSKKISGGRIPCIVYLPKEEVKAIDQEVEETDSSRSSVIARIYYLGKKQTPNNEDQNQ
>CP033545.1|AZC04906.1|3248605_3248908_-|hypothetical-protein
MVDRAGQLLAGRFSGTVLPPLFGLPPFCGRDGGRFVKNLPRVFIMKKSIQIIEHTPIYDLEAFKQRQKKRKIHQLFKNFIDTFTFLCAVFMTFSILFIGG
>CP033545.1|AZC04907.1|3249279_3249627_+|hypothetical-protein
MQAKKDYEYTLKILGKSKTNSSSDHYTFSESIDEPDFEILYSSYNNPASYRKIKIIDLYNKKYDGEYYTYIDAYCFSAEDERTFRLDRIEQVKELSSGKIFFSQHEIEKIFKRNC
>CP033545.1|AZC04908.1|3250264_3250672_+|hypothetical-protein
MSQTPDPKYSWVFQRLTENDQGYNLESIVAYTIYKKHKIDFINQIKSRHQRDPNDQEWETFHTQCELDSSLKGFRDQANIVVSNLLNVALSSEIAALEDQALLDSKVKAQLEIVGNKSEYNQWVYDRKTRSWVVV
>CP033545.1|AZC04909.1|3251043_3251367_+|hypothetical-protein
MNHQLGRPNQYIEKVSWPDPEVDPKFESDGYYDSDIPPEKFVGGTIEKFRNQADLNRRYNYIKSVHLAMPMTNQYMYKKGLFLLRLDREFTPEQAKEYEIKFYKTVK
>CP033545.1|AZC04910.1|3251375_3251573_+|hypothetical-protein
MQVMIRVLEARKIEHGCNLLAEINKKGEVTNLYDYNGNELKINFLRNEVYYNKIWWTFPSKIENF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033545_2	2.4\|522079\|18\|CP033545\|CRT	522079-522096	18	CP033545.1	522761-522778	0	1.0
CP033545_2	2.6\|522187\|18\|CP033545\|CRT	522187-522204	18	CP033545.1	522761-522778	0	1.0
CP033545_2	2.4\|522079\|18\|CP033545\|CRT	522079-522096	18	CP033545.1	521851-521868	1	0.944
CP033545_2	2.4\|522079\|18\|CP033545\|CRT	522079-522096	18	CP033545.1	522842-522859	1	0.944
CP033545_2	2.4\|522079\|18\|CP033545\|CRT	522079-522096	18	CP033545.1	522923-522940	1	0.944
CP033545_2	2.6\|522187\|18\|CP033545\|CRT	522187-522204	18	CP033545.1	521851-521868	1	0.944
CP033545_2	2.6\|522187\|18\|CP033545\|CRT	522187-522204	18	CP033545.1	522842-522859	1	0.944
CP033545_2	2.6\|522187\|18\|CP033545\|CRT	522187-522204	18	CP033545.1	522923-522940	1	0.944

1. spacer 2.4|522079|18|CP033545|CRT matches to position: 522761-522778, mismatch: 0, identity: 1.0

accaccgataatgtcagt	CRISPR spacer
accaccgataatgtcagt	Protospacer
******************

2. spacer 2.6|522187|18|CP033545|CRT matches to position: 522761-522778, mismatch: 0, identity: 1.0

accaccgataatgtcagt	CRISPR spacer
accaccgataatgtcagt	Protospacer
******************

3. spacer 2.4|522079|18|CP033545|CRT matches to position: 521851-521868, mismatch: 1, identity: 0.944

accaccgataatgtcagt	CRISPR spacer
accaccgatgatgtcagt	Protospacer
*********.********

4. spacer 2.4|522079|18|CP033545|CRT matches to position: 522842-522859, mismatch: 1, identity: 0.944

accaccgataatgtcagt	CRISPR spacer
accaccaataatgtcagt	Protospacer
******.***********

5. spacer 2.4|522079|18|CP033545|CRT matches to position: 522923-522940, mismatch: 1, identity: 0.944

accaccgataatgtcagt	CRISPR spacer
accaccgatgatgtcagt	Protospacer
*********.********

6. spacer 2.6|522187|18|CP033545|CRT matches to position: 521851-521868, mismatch: 1, identity: 0.944

accaccgataatgtcagt	CRISPR spacer
accaccgatgatgtcagt	Protospacer
*********.********

7. spacer 2.6|522187|18|CP033545|CRT matches to position: 522842-522859, mismatch: 1, identity: 0.944

accaccgataatgtcagt	CRISPR spacer
accaccaataatgtcagt	Protospacer
******.***********

8. spacer 2.6|522187|18|CP033545|CRT matches to position: 522923-522940, mismatch: 1, identity: 0.944

accaccgataatgtcagt	CRISPR spacer
accaccgatgatgtcagt	Protospacer
*********.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033545_1	1.2\|103218\|32\|CP033545\|PILER-CR	103218-103249	32	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	299561-299592	6	0.812
CP033545_1	1.2\|103218\|32\|CP033545\|PILER-CR	103218-103249	32	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	205975-206006	6	0.812
CP033545_1	1.2\|103218\|32\|CP033545\|PILER-CR	103218-103249	32	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	340909-340940	6	0.812
CP033545_1	1.2\|103218\|32\|CP033545\|PILER-CR	103218-103249	32	NC_019358	Clostridium perfringens plasmid pCP8533S12 DNA, complete sequence	5865-5896	8	0.75
CP033545_2	2.1\|521899\|30\|CP033545\|CRT	521899-521928	30	AP013864	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S26-C75, * SEQUENCING IN PROGRESS *	10902-10931	8	0.733
CP033545_1	1.2\|103218\|32\|CP033545\|PILER-CR	103218-103249	32	NZ_CP029457	Bacillus cereus strain FORC087 plasmid pFORC087.3, complete sequence	14787-14818	9	0.719
CP033545_1	1.2\|103218\|32\|CP033545\|PILER-CR	103218-103249	32	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	3551-3582	10	0.688
CP033545_1	1.2\|103218\|32\|CP033545\|PILER-CR	103218-103249	32	NC_010371	Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence	43411-43442	10	0.688
CP033545_2	2.3\|522019\|30\|CP033545\|CRT	522019-522048	30	MN692983	Marine virus AFVG_117M11, complete genome	25850-25879	10	0.667
CP033545_2	2.5\|522127\|30\|CP033545\|CRT	522127-522156	30	MN692983	Marine virus AFVG_117M11, complete genome	25850-25879	10	0.667
CP033545_2	2.7\|522235\|30\|CP033545\|CRT	522235-522264	30	MN692983	Marine virus AFVG_117M11, complete genome	25850-25879	10	0.667
CP033545_2	2.8\|522295\|30\|CP033545\|CRT	522295-522324	30	MN692983	Marine virus AFVG_117M11, complete genome	25850-25879	10	0.667

1. spacer 1.2|103218|32|CP033545|PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 6, identity: 0.812

atcattttttcttcaatttctactaccagttg	CRISPR spacer
atcattttttcttttatttctactagtagctc	Protospacer
*************. ********** .**.*

2. spacer 1.2|103218|32|CP033545|PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 6, identity: 0.812

atcattttttcttcaatttctactaccagttg	CRISPR spacer
atcattttttcttttatttctactagtagctc	Protospacer
*************. ********** .**.*

3. spacer 1.2|103218|32|CP033545|PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 6, identity: 0.812

atcattttttcttcaatttctactaccagttg	CRISPR spacer
atcattttttcttttatttctactagtagctc	Protospacer
*************. ********** .**.*

4. spacer 1.2|103218|32|CP033545|PILER-CR matches to NC_019358 (Clostridium perfringens plasmid pCP8533S12 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

atcattttttcttcaatttctactaccagttg	CRISPR spacer
ttcattttttcttcaatttgtgctaatattgt	Protospacer
 ****************** *.*** .* *

5. spacer 2.1|521899|30|CP033545|CRT matches to AP013864 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S26-C75, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

gccaccagttaaaccaccgataatgtcagt	CRISPR spacer
gccactaattaaaccaccgataaaagtctt	Protospacer
*****.*.*************** . .  *

6. spacer 1.2|103218|32|CP033545|PILER-CR matches to NZ_CP029457 (Bacillus cereus strain FORC087 plasmid pFORC087.3, complete sequence) position: , mismatch: 9, identity: 0.719

atcattttttcttcaatttctactaccagttg--	CRISPR spacer
ttctttttttcttcaatttttactttt--tcggc	Protospacer
 ** ***************.**** ..  *.*

7. spacer 1.2|103218|32|CP033545|PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 10, identity: 0.688

atcattttttcttcaatttctactaccagttg	CRISPR spacer
ctctttttttcttcaatttctactgaacaaca	Protospacer
 ** ********************.   . ..

8. spacer 1.2|103218|32|CP033545|PILER-CR matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 10, identity: 0.688

atcattttttcttcaatttctactaccagttg	CRISPR spacer
tcagtttttgcttcaatttctacaacctttct	Protospacer
 . .***** ************* ***  *.

9. spacer 2.3|522019|30|CP033545|CRT matches to MN692983 (Marine virus AFVG_117M11, complete genome) position: , mismatch: 10, identity: 0.667

accaccagttaaaccaccgatgatatcagt	CRISPR spacer
accaccatttaaaccaccgattgcggagag	Protospacer
******* ************* ...  ..

10. spacer 2.5|522127|30|CP033545|CRT matches to MN692983 (Marine virus AFVG_117M11, complete genome) position: , mismatch: 10, identity: 0.667

accaccagttaaaccaccgatgatatcagt	CRISPR spacer
accaccatttaaaccaccgattgcggagag	Protospacer
******* ************* ...  ..

11. spacer 2.7|522235|30|CP033545|CRT matches to MN692983 (Marine virus AFVG_117M11, complete genome) position: , mismatch: 10, identity: 0.667

accaccagttaaaccaccgatgatatcagt	CRISPR spacer
accaccatttaaaccaccgattgcggagag	Protospacer
******* ************* ...  ..

12. spacer 2.8|522295|30|CP033545|CRT matches to MN692983 (Marine virus AFVG_117M11, complete genome) position: , mismatch: 10, identity: 0.667

accaccagttaaaccaccgatgatatcagt	CRISPR spacer
accaccatttaaaccaccgattgcggagag	Protospacer
******* ************* ...  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1188259 : 1291502

Acinetobacter_phage(58.06%)

head,capsid,integrase,tail,terminase,protease

attL 1208328:1208345|attR 1296559:1296576

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC04124.1\|1188259_1188946_-\|protease	zinc protease	NA	NA	NA	NA
AZC04125.1\|1188942_1189458_-	PAAR domain-containing protein	NA	NA	NA	NA
AZC04126.1\|1189615_1189927_-	hypothetical protein	NA	NA	NA	NA
AZC04127.1\|1193065_1193752_-	pirin family protein	NA	NA	NA	NA
AZC04128.1\|1195503_1196577_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AZC04129.1\|1197499_1197991_+	DUF3015 domain-containing protein	NA	NA	NA	NA
AZC05219.1\|1198841_1199945_+	hypothetical protein	NA	NA	NA	NA
AZC04130.1\|1201321_1201876_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	2.7e-98	100.0
1208328:1208345	attL	NA	NA	NA	NA
AZC05220.1\|1208531_1209581_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.1e-188	98.6
AZC04131.1\|1216433_1218236_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	0.0e+00	95.5
AZC04132.1\|1220504_1221914_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
AZC04133.1\|1222548_1223427_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AZC04134.1\|1223541_1224999_+	alpha/beta hydrolase	NA	NA	NA	NA
AZC04135.1\|1225316_1225760_-	DUF2726 domain-containing protein	NA	NA	NA	NA
AZC04136.1\|1226377_1227004_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.0e-41	43.5
AZC04137.1\|1227150_1227909_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
AZC04138.1\|1236163_1236886_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
AZC04139.1\|1236904_1237741_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
AZC04140.1\|1239996_1240380_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AZC04141.1\|1243234_1244248_-	lipoyl synthase	NA	NA	NA	NA
AZC04142.1\|1246106_1247321_-	MFS transporter	NA	NA	NA	NA
AZC04143.1\|1249243_1250299_-	OmpW family protein	NA	NA	NA	NA
AZC05221.1\|1254953_1255589_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AZC04144.1\|1255948_1256401_-	DUF962 domain-containing protein	NA	NA	NA	NA
AZC04145.1\|1256973_1257591_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.0e-21	44.7
AZC04146.1\|1257882_1258884_-	lytic murein transglycosylase B	NA	NA	NA	NA
AZC04147.1\|1263667_1264654_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	1.8e-185	99.4
AZC04148.1\|1264650_1264920_-	hypothetical protein	A0A1B1P9G0	Acinetobacter_phage	3.4e-46	95.5
AZC04149.1\|1264921_1265404_-	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	3.7e-67	71.1
AZC04150.1\|1265400_1265841_-	hypothetical protein	A0A0D4DBH6	Acinetobacter_phage	1.2e-37	97.5
AZC04151.1\|1265840_1266113_-	hypothetical protein	A0A0P0J0F2	Acinetobacter_phage	4.3e-41	90.8
AZC04152.1\|1266438_1267047_-	exonuclease	A0A2H4J882	uncultured_Caudovirales_phage	8.4e-85	76.3
AZC04153.1\|1267027_1267786_-	phage recombination protein Bet	A0A088CBI3	Shigella_phage	8.7e-55	59.6
AZC04154.1\|1269084_1269468_-	hypothetical protein	NA	NA	NA	NA
AZC04155.1\|1270046_1270247_-	hypothetical protein	NA	NA	NA	NA
AZC04156.1\|1271196_1271652_-	hypothetical protein	NA	NA	NA	NA
AZC04157.1\|1271715_1271931_-	hypothetical protein	A0A0P0I8I5	Acinetobacter_phage	6.1e-30	97.2
AZC04158.1\|1271945_1272728_-	helix-turn-helix domain-containing protein	J7I4M9	Acinetobacter_phage	2.3e-98	74.6
AZC04159.1\|1273029_1273284_+	hypothetical protein	NA	NA	NA	NA
AZC04160.1\|1274315_1275677_+	replicative DNA helicase	A0A1B1P9I0	Acinetobacter_phage	2.9e-226	87.2
AZC04161.1\|1275673_1275925_+	hypothetical protein	A0A0P0IE39	Acinetobacter_phage	1.5e-40	98.8
AZC05222.1\|1276118_1276382_+	hypothetical protein	A0A1X9SFB0	Acinetobacter_phage	1.0e-31	97.0
AZC05223.1\|1276666_1276969_+	hypothetical protein	NA	NA	NA	NA
AZC04162.1\|1276965_1277418_+	hypothetical protein	A0A0P0HSP6	Acinetobacter_phage	4.8e-77	97.3
AZC04163.1\|1277417_1277711_+	hypothetical protein	A0A0D4DBT8	Acinetobacter_phage	9.4e-50	100.0
AZC04164.1\|1277721_1277991_+	hypothetical protein	A0A0D4DC03	Acinetobacter_phage	9.3e-44	97.8
AZC05224.1\|1278681_1278921_+	hypothetical protein	NA	NA	NA	NA
AZC04165.1\|1279249_1279516_+	hypothetical protein	NA	NA	NA	NA
AZC04166.1\|1279508_1279784_+	DUF968 domain-containing protein	A0A0D4DC07	Acinetobacter_phage	5.4e-23	59.3
AZC04167.1\|1279831_1280050_+	hypothetical protein	NA	NA	NA	NA
AZC04168.1\|1280043_1280226_+	hypothetical protein	NA	NA	NA	NA
AZC04169.1\|1280331_1280823_+	hypothetical protein	A0A0D4DC11	Acinetobacter_phage	1.1e-61	72.0
AZC04170.1\|1280812_1280995_+	hypothetical protein	NA	NA	NA	NA
AZC04171.1\|1281343_1281901_+	hypothetical protein	A0A0A0RVZ2	Escherichia_phage	2.7e-05	57.1
AZC04172.1\|1281878_1282169_+	hypothetical protein	NA	NA	NA	NA
AZC04173.1\|1282098_1282398_+	HNH endonuclease	A0A0R6PH58	Moraxella_phage	1.2e-20	58.8
AZC04174.1\|1282731_1283214_+\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	3.0e-24	47.5
AZC04175.1\|1285544_1286891_+\|capsid	phage major capsid protein	A0A2H4JBZ9	uncultured_Caudovirales_phage	1.3e-175	79.9
AZC04176.1\|1288617_1288911_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JAM4	uncultured_Caudovirales_phage	7.5e-23	55.1
AZC04177.1\|1289057_1289414_+\|head,tail	head-tail adaptor protein	A0A1J0GUY4	Halomonas_phage	4.1e-23	52.8
AZC04178.1\|1289417_1289903_+	hypothetical protein	A0A2H4JB20	uncultured_Caudovirales_phage	9.9e-28	45.3
AZC04179.1\|1289902_1290274_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	1.5e-20	47.1
AZC04180.1\|1291028_1291502_+	structural protein 3 family protein	A0A2H4JBZ0	uncultured_Caudovirales_phage	2.4e-55	64.1
1296559:1296576	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1550991 : 1568107

Acinetobacter_phage(77.78%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC04275.1\|1550991_1552200_+	DUF4102 domain-containing protein	A0A0P0IKP2	Acinetobacter_phage	4.4e-109	48.3
AZC04276.1\|1552465_1552723_-	hypothetical protein	A0A0P0J0B1	Acinetobacter_phage	6.8e-44	92.9
AZC04277.1\|1552719_1552929_-	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	2.0e-33	98.6
AZC04278.1\|1552925_1553312_-	hypothetical protein	A0A1B1P9F6	Acinetobacter_phage	1.4e-29	64.2
AZC04279.1\|1553322_1553640_-	hypothetical protein	NA	NA	NA	NA
AZC04280.1\|1553636_1554245_-	exonuclease	A0A2H4J882	uncultured_Caudovirales_phage	8.4e-85	76.3
AZC04281.1\|1556567_1556948_-	hypothetical protein	NA	NA	NA	NA
AZC04282.1\|1557151_1557895_-	helix-turn-helix domain-containing protein	A0A1B1P9J5	Acinetobacter_phage	5.3e-81	61.5
AZC04283.1\|1557994_1558180_+	hypothetical protein	J7HXD2	Acinetobacter_phage	2.1e-10	59.3
AZC04284.1\|1558190_1558457_+	hypothetical protein	A0A1B1P9I3	Acinetobacter_phage	4.7e-32	77.3
AZC04285.1\|1560929_1561154_+	hypothetical protein	A0A0P0I4B7	Acinetobacter_phage	1.2e-33	98.6
AZC04286.1\|1561150_1561378_+	hypothetical protein	A0A0P0IL13	Acinetobacter_phage	1.2e-33	94.6
AZC04287.1\|1561374_1561632_+	hypothetical protein	A0A2H4J6Z3	uncultured_Caudovirales_phage	4.3e-22	61.5
AZC05232.1\|1561825_1562089_+	hypothetical protein	A0A1X9SFB0	Acinetobacter_phage	1.0e-31	97.0
AZC05233.1\|1562373_1562676_+	hypothetical protein	NA	NA	NA	NA
AZC04288.1\|1563125_1563419_+	hypothetical protein	A0A1B1P9I9	Acinetobacter_phage	2.7e-49	99.0
AZC04289.1\|1563709_1564246_+	hypothetical protein	A0A0D4DCD6	Acinetobacter_phage	1.9e-96	98.3
AZC05234.1\|1564388_1564628_+	hypothetical protein	NA	NA	NA	NA
AZC04290.1\|1565217_1565493_+	DUF968 domain-containing protein	A0A0D4DC07	Acinetobacter_phage	5.4e-23	59.3
AZC04291.1\|1565570_1565759_+	hypothetical protein	NA	NA	NA	NA
AZC04292.1\|1565752_1565935_+	hypothetical protein	NA	NA	NA	NA
AZC04293.1\|1566040_1566532_+	hypothetical protein	A0A0D4DC11	Acinetobacter_phage	1.1e-61	72.0
AZC04294.1\|1566521_1566704_+	hypothetical protein	NA	NA	NA	NA
AZC04295.1\|1567052_1567610_+	hypothetical protein	A0A0A0RVZ2	Escherichia_phage	2.7e-05	57.1
AZC04296.1\|1567587_1567878_+	hypothetical protein	NA	NA	NA	NA
AZC04297.1\|1567807_1568107_+	HNH endonuclease	A0A0R6PH58	Moraxella_phage	1.2e-20	58.8

DBSCAN-SWA_3

1574328 : 1577910

uncultured_Caudovirales_phage(50.0%)

head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC04300.1\|1574328_1574622_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JAM4	uncultured_Caudovirales_phage	7.5e-23	55.1
AZC04301.1\|1574769_1575126_+\|head,tail	head-tail adaptor protein	A0A1J0GUY4	Halomonas_phage	4.1e-23	52.8
AZC04302.1\|1575129_1575615_+	hypothetical protein	A0A2H4JB20	uncultured_Caudovirales_phage	9.9e-28	45.3
AZC04303.1\|1575614_1575986_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	1.5e-20	47.1
AZC04304.1\|1576061_1576535_+	structural protein 3 family protein	A0A2H4JBZ0	uncultured_Caudovirales_phage	2.5e-52	59.2
AZC04305.1\|1577086_1577299_+	hypothetical protein	NA	NA	NA	NA
AZC04306.1\|1577385_1577910_+	DUF4468 domain-containing protein	A0A0P0I8L3	Acinetobacter_phage	1.3e-25	43.5

DBSCAN-SWA_4

2687949 : 2693682

Acinetobacter_phage(50.0%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC04708.1\|2687949_2688759_-\|head	phage head morphogenesis protein	M4T3R2	Psychrobacter_phage	6.2e-51	41.0
AZC04709.1\|2688703_2690038_-	DUF1073 domain-containing protein	M4SN90	Psychrobacter_phage	9.8e-86	38.9
AZC04710.1\|2690046_2691573_-	helicase	I3PGT7	Xanthomonas_phage	1.4e-91	42.1
AZC04711.1\|2691550_2691994_-	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	3.7e-29	52.0
AZC04712.1\|2692085_2692727_-	hypothetical protein	A0A0P0I8J9	Acinetobacter_phage	7.7e-113	87.8
AZC04713.1\|2693226_2693682_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	2.6e-78	94.0

DBSCAN-SWA_5

3088844 : 3097689

Acinetobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC04834.1\|3088844_3089246_-	hypothetical protein	A0A0D4DBP2	Acinetobacter_phage	8.7e-14	34.1
AZC04835.1\|3089300_3089648_-	hypothetical protein	NA	NA	NA	NA
AZC04836.1\|3089657_3090068_-	DUF4236 domain-containing protein	NA	NA	NA	NA
AZC04837.1\|3090076_3090253_-	hypothetical protein	A0A0R6PI25	Moraxella_phage	4.8e-09	59.6
AZC04838.1\|3090347_3091277_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	5.7e-24	47.4
AZC04839.1\|3091356_3091518_-	Arc family DNA-binding protein	NA	NA	NA	NA
AZC04840.1\|3092037_3092508_-	DUF2335 domain-containing protein	A0A2H4J330	uncultured_Caudovirales_phage	8.0e-59	80.0
AZC04841.1\|3092519_3092741_-	hypothetical protein	NA	NA	NA	NA
AZC05286.1\|3092969_3093176_-	hypothetical protein	A0A1B1P9F7	Acinetobacter_phage	3.8e-29	91.2
AZC04842.1\|3093817_3094738_-	hypothetical protein	A0A059VG08	Pseudomonas_phage	2.7e-58	41.4
AZC04843.1\|3095071_3095599_-	Rha family transcriptional regulator	A0A1B1P9D9	Acinetobacter_phage	3.9e-54	63.7
AZC05287.1\|3095840_3096236_-	hypothetical protein	A0A1B1P9D6	Acinetobacter_phage	9.7e-66	91.6
AZC04844.1\|3096237_3096660_-	hypothetical protein	A0A1B1P9D5	Acinetobacter_phage	3.9e-57	78.6
AZC04845.1\|3096664_3097057_-	glutamate 5-kinase	A0A1B1P9E3	Acinetobacter_phage	2.3e-59	86.9
AZC04846.1\|3097060_3097447_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	8.0e-65	96.9
AZC04847.1\|3097503_3097689_-	hypothetical protein	A0A1B1P9F4	Acinetobacter_phage	2.5e-24	88.3

DBSCAN-SWA_6

3102262 : 3108112

Acinetobacter_phage(83.33%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC05288.1\|3102262_3103573_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	4.3e-243	98.8
AZC04849.1\|3103871_3104129_-	hypothetical protein	A0A2H4J6Z3	uncultured_Caudovirales_phage	7.3e-22	61.5
AZC04850.1\|3106460_3106844_-	XRE family transcriptional regulator	A0A0N7IRF8	Acinetobacter_phage	6.1e-33	61.7
AZC04851.1\|3106854_3107040_-	hypothetical protein	J7HXD2	Acinetobacter_phage	8.6e-25	90.2
AZC04852.1\|3107117_3107882_+	helix-turn-helix domain-containing protein	J7I4M9	Acinetobacter_phage	1.2e-136	94.4
AZC04853.1\|3107896_3108112_+	hypothetical protein	A0A0P0I8I5	Acinetobacter_phage	1.2e-30	98.6

DBSCAN-SWA_7

3111516 : 3114737

Acinetobacter_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC04855.1\|3111516_3112275_+	phage recombination protein Bet	A0A088CBI3	Shigella_phage	8.7e-55	59.6
AZC04856.1\|3112255_3112864_+	exonuclease	A0A2H4J882	uncultured_Caudovirales_phage	3.4e-86	77.3
AZC04857.1\|3112860_3113118_+	hypothetical protein	K4HYN5	Acinetobacter_phage	2.8e-29	78.8
AZC04858.1\|3113114_3113501_+	hypothetical protein	A0A1B1P9F6	Acinetobacter_phage	1.4e-29	64.2
AZC04859.1\|3113497_3113707_+	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	2.0e-33	98.6
AZC04860.1\|3113703_3113961_+	hypothetical protein	A0A0P0J0B1	Acinetobacter_phage	6.8e-44	92.9
AZC04861.1\|3113961_3114162_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AZC04862.1\|3114263_3114737_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.2e-23	42.3

DBSCAN-SWA_8

3162902 : 3271536

Acinetobacter_phage(14.29%)

head,capsid,holin,tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC04883.1\|3162902_3163826_+\|tRNA	tRNA-dihydrouridine synthase C	NA	NA	NA	NA
AZC04884.1\|3163902_3164856_-	hypothetical protein	NA	NA	NA	NA
AZC04885.1\|3167460_3168186_-	hypothetical protein	NA	NA	NA	NA
AZC04886.1\|3168201_3170334_-	hypothetical protein	NA	NA	NA	NA
AZC04887.1\|3172171_3172741_-	dCTP deaminase	S5VM63	Pseudomonas_phage	3.3e-75	75.0
AZC04888.1\|3179853_3180189_-	calcium-binding protein	NA	NA	NA	NA
AZC05292.1\|3180169_3180289_-	hypothetical protein	NA	NA	NA	NA
AZC04889.1\|3180520_3181108_-	LysE family translocator	NA	NA	NA	NA
AZC04890.1\|3184772_3185654_+	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	NA	NA	NA	NA
AZC04891.1\|3189697_3190120_+	hypothetical protein	NA	NA	NA	NA
AZC04892.1\|3190167_3190929_-	ferredoxin--NADP reductase	NA	NA	NA	NA
AZC04893.1\|3191014_3191902_+	LysR family transcriptional regulator	NA	NA	NA	NA
AZC05293.1\|3191913_3192267_-	calcium-binding protein	NA	NA	NA	NA
AZC04894.1\|3193676_3195173_-	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA
AZC04895.1\|3198664_3198973_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
AZC04896.1\|3198972_3199494_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
AZC05294.1\|3208189_3208669_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
AZC05295.1\|3210740_3211040_+	hypothetical protein	NA	NA	NA	NA
AZC04897.1\|3212744_3213461_-	response regulator	W8CYM9	Bacillus_phage	3.1e-38	37.7
AZC04898.1\|3213457_3213664_-	hypothetical protein	NA	NA	NA	NA
AZC04899.1\|3216883_3217018_+	preprotein translocase subunit YajC	NA	NA	NA	NA
AZC04900.1\|3223431_3224361_+	LysR family transcriptional regulator	NA	NA	NA	NA
AZC04901.1\|3230647_3231877_-	CoA transferase	NA	NA	NA	NA
AZC05296.1\|3236000_3237176_-	zinc-binding dehydrogenase	NA	NA	NA	NA
AZC04902.1\|3241621_3241864_-	hypothetical protein	NA	NA	NA	NA
AZC04903.1\|3243016_3243358_-	hypothetical protein	NA	NA	NA	NA
AZC05297.1\|3246127_3246310_-	hypothetical protein	NA	NA	NA	NA
AZC04904.1\|3246314_3246548_-	hypothetical protein	NA	NA	NA	NA
AZC04905.1\|3246544_3246754_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
AZC04906.1\|3248605_3248908_-	hypothetical protein	NA	NA	NA	NA
AZC04907.1\|3249279_3249627_+	hypothetical protein	NA	NA	NA	NA
AZC04908.1\|3250264_3250672_+	hypothetical protein	NA	NA	NA	NA
AZC04909.1\|3251043_3251367_+	hypothetical protein	NA	NA	NA	NA
AZC04910.1\|3251375_3251573_+	hypothetical protein	A0A0D4DBH0	Acinetobacter_phage	5.2e-12	70.5
AZC04911.1\|3251569_3251806_-	hypothetical protein	NA	NA	NA	NA
AZC04912.1\|3252247_3252478_-	hypothetical protein	A0A2H4J8L3	uncultured_Caudovirales_phage	8.0e-12	50.0
AZC04913.1\|3252474_3252768_-	hypothetical protein	NA	NA	NA	NA
AZC04914.1\|3252880_3253078_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AZC04915.1\|3258703_3258823_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	3.7e-05	52.8
AZC04916.1\|3261530_3262532_-	hypothetical protein	U5PW98	Acinetobacter_phage	4.7e-125	62.8
AZC04917.1\|3265142_3265487_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	8.3e-21	42.1
AZC04918.1\|3265483_3266149_-\|plate	phage baseplate assembly protein V	V9IQH1	Stenotrophomonas_phage	1.2e-07	34.4
AZC04919.1\|3266221_3266674_-	phage virion morphogenesis protein	O80313	Escherichia_phage	5.0e-26	48.6
AZC04920.1\|3266674_3267175_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	4.9e-38	61.4
AZC04921.1\|3268034_3268307_-\|holin	phage holin family protein	E5E3W3	Burkholderia_phage	3.5e-06	36.4
AZC04922.1\|3268661_3268874_-\|tail	phage tail protein	A0A077K8R0	Ralstonia_phage	1.4e-15	59.1
AZC04923.1\|3268877_3269105_-	hypothetical protein	NA	NA	NA	NA
AZC04924.1\|3269101_3269551_-\|head	head completion protein	Q9ZXM1	Pseudomonas_virus	3.6e-16	35.9
AZC04925.1\|3270525_3271536_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	5.0e-106	59.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection