CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP012214	Campylobacter jejuni strain CJ088CC52, complete genome	1 crisprs	DEDDh,WYL,c2c9_V-U4,cas2,cas1,cas9,csa3	0	5	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP012214_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012214_2

1374620-1374792

orTypeII

Consensus_repeat	Method
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGAT	PILER-CR

2 spacers

cas2,cas1,cas9

The CRISPR arrays of CP012214_2

>merge|CP012214|2|1374620-1374792|CRISPRCasFinder,PILER-CR
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGATTGAAGTGTAGTAAAGGCTGTAGCACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATACTCTAAAGGCTCTCCCTCCCACACGTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGAT

>CP012214|2|2|1374620-1374788|CRISPRCasFinder
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGATTGAAGTGTAGTAAAGGCTGTAGCAC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATACTCTAAAGGCTCTCCCTCCCACACG
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>CP012214|2|1|1374622-1374792|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGATTG	AAGTGTAGTAAAGGCTGTAGCACTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATACT	CTAAAGGCTCTCCCTCCCACACGTGTTT
TAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP012214.1\|AXL37593.1\|1376243_1379198_-\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
CP012214.1\|AXL37597.1\|1382530_1383280_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
CP012214.1\|AXL37592.1\|1375356_1376247_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP012214.1\|AXL37598.1\|1383254_1383986_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
CP012214.1\|AXL37587.1\|1371095_1372637_+\|bilirubin-oxidase	unknown	unknown	gnl\|CDD\|225043
CP012214.1\|AXL37586.1\|1369823_1370972_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
CP012214.1\|AXL37589.1\|1372860_1373307_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
CP012214.1\|AXL37595.1\|1380878_1381868_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP012214.1\|AXL37582.1\|1365197_1365839_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|319893
CP012214.1\|AXL37599.1\|1383982_1385020_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|224292
CP012214.1\|AXL37588.1\|1372638_1372860_+\|molybdenum-cofactor-biosynthesis-protein-MoaD	unknown	unknown	gnl\|CDD\|224888
CP012214.1\|AXL37585.1\|1368639_1368831_-\|Tat-pathway-signal-protein	unknown	unknown	gnl\|CDD\|236534
CP012214.1\|AXL37590.1\|1373310_1374501_+\|molybdenum-cofactor-biosynthesis-protein-MoaA	unknown	unknown	gnl\|CDD\|223380
CP012214.1\|AXL37840.1\|1368805_1369507_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
CP012214.1\|AXL37596.1\|1381928_1382534_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP012214.1\|AXL37594.1\|1379404_1380838_+\|C4-dicarboxylate-ABC-transporter	unknown	unknown	gnl\|CDD\|225611
CP012214.1\|AXL37600.1\|1385084_1385534_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|223854
CP012214.1\|AXL37584.1\|1368097_1368640_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|239153
CP012214.1\|AXL37591.1\|1374932_1375364_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP012214.1\|AXL37583.1\|1365835_1368049_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|239153

Protein	Function_ID	Function_description	E-value
CP012214.1\|AXL37593.1\|1376243_1379198_-\|CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
CP012214.1\|AXL37597.1\|1382530_1383280_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.75008e-93
CP012214.1\|AXL37592.1\|1375356_1376247_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
CP012214.1\|AXL37598.1\|1383254_1383986_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	8.6877e-99
CP012214.1\|AXL37587.1\|1371095_1372637_+\|bilirubin-oxidase	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.39198e-119
CP012214.1\|AXL37586.1\|1369823_1370972_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
CP012214.1\|AXL37589.1\|1372860_1373307_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
CP012214.1\|AXL37595.1\|1380878_1381868_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP012214.1\|AXL37582.1\|1365197_1365839_-\|formate-dehydrogenase	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
CP012214.1\|AXL37599.1\|1383982_1385020_-\|DNA-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.6328e-34
CP012214.1\|AXL37588.1\|1372638_1372860_+\|molybdenum-cofactor-biosynthesis-protein-MoaD	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	6.20963e-11
CP012214.1\|AXL37585.1\|1368639_1368831_-\|Tat-pathway-signal-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
CP012214.1\|AXL37590.1\|1373310_1374501_+\|molybdenum-cofactor-biosynthesis-protein-MoaA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	8.78201e-143
CP012214.1\|AXL37840.1\|1368805_1369507_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00273617
CP012214.1\|AXL37596.1\|1381928_1382534_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	8.14455e-71
CP012214.1\|AXL37594.1\|1379404_1380838_+\|C4-dicarboxylate-ABC-transporter	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	5.44804e-71
CP012214.1\|AXL37600.1\|1385084_1385534_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
CP012214.1\|AXL37584.1\|1368097_1368640_-\|formate-dehydrogenase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	9.0213e-62
CP012214.1\|AXL37591.1\|1374932_1375364_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59
CP012214.1\|AXL37583.1\|1365835_1368049_-\|formate-dehydrogenase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	4.07231e-154

>CP012214.1|AXL37590.1|1373310_1374501_+|molybdenum-cofactor-biosynthesis-protein-MoaA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDIIFMP
>CP012214.1|AXL37589.1|1372860_1373307_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>CP012214.1|AXL37588.1|1372638_1372860_+|molybdenum-cofactor-biosynthesis-protein-MoaD
MVKVEFLGPINKDNLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKTGDKIALLPPVCGG
>CP012214.1|AXL37587.1|1371095_1372637_+|bilirubin-oxidase
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIQVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVELPKKLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>CP012214.1|AXL37586.1|1369823_1370972_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYSVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>CP012214.1|AXL37840.1|1368805_1369507_-|hypothetical-protein
MDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENFIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>CP012214.1|AXL37585.1|1368639_1368831_-|Tat-pathway-signal-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>CP012214.1|AXL37584.1|1368097_1368640_-|formate-dehydrogenase
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARI
>CP012214.1|AXL37583.1|1365835_1368049_-|formate-dehydrogenase
MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>CP012214.1|AXL37582.1|1365197_1365839_-|formate-dehydrogenase
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>CP012214.1|AXL37591.1|1374932_1375364_-|CRISPR-associated-protein-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>CP012214.1|AXL37592.1|1375356_1376247_-|CRISPR-associated-protein-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>CP012214.1|AXL37593.1|1376243_1379198_-|CRISPR-associated-protein
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKGKILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCITQSFLKYELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINILNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>CP012214.1|AXL37594.1|1379404_1380838_+|C4-dicarboxylate-ABC-transporter
MPIFMICSTLLAVIVVTYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSSLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTILCQKNKTLQK
>CP012214.1|AXL37595.1|1380878_1381868_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQVVEESEMYRSFNMGVGLVVVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>CP012214.1|AXL37596.1|1381928_1382534_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENALELEKIFSPFSLKNLLTKEKKIDRKILGKIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>CP012214.1|AXL37597.1|1382530_1383280_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>CP012214.1|AXL37598.1|1383254_1383986_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLIMIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>CP012214.1|AXL37599.1|1383982_1385020_-|DNA-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>CP012214.1|AXL37600.1|1385084_1385534_-|DNA-polymerase-III-subunit-beta
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP012214_2	2.1\|1374657\|29\|CP012214\|CRISPRCasFinder	1374657-1374685	29	MN530981	Campylobacter phage DA10, complete genome	12856-12884	1	0.966
CP012214_2	2.3\|1374663\|25\|CP012214\|PILER-CR	1374663-1374687	25	MN530981	Campylobacter phage DA10, complete genome	12860-12884	1	0.96
CP012214_2	2.2\|1374723\|29\|CP012214\|CRISPRCasFinder	1374723-1374751	29	MN530981	Campylobacter phage DA10, complete genome	19435-19463	2	0.931
CP012214_2	2.4\|1374729\|28\|CP012214\|PILER-CR	1374729-1374756	28	MN530981	Campylobacter phage DA10, complete genome	19436-19463	2	0.929
CP012214_1	1.1\|1271609\|34\|CP012214\|CRISPRCasFinder	1271609-1271642	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1374657|29|CP012214|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

tgattgaagtgtagtaaaggctgtagcac	CRISPR spacer
tgattgaagtgtggtaaaggctgtagcac	Protospacer
************.****************

2. spacer 2.3|1374663|25|CP012214|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.96

tgaagtgtagtaaaggctgtagcac	CRISPR spacer
tgaagtgtggtaaaggctgtagcac	Protospacer
********.****************

3. spacer 2.2|1374723|29|CP012214|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.931

tatactctaaaggctctccctcccacacg	CRISPR spacer
tatactctaaaggttctccttcccacacg	Protospacer
*************.*****.*********

4. spacer 2.4|1374729|28|CP012214|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.929

atactctaaaggctctccctcccacacg	CRISPR spacer
atactctaaaggttctccttcccacacg	Protospacer
************.*****.*********

5. spacer 1.1|1271609|34|CP012214|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1288254 : 1294324

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL37508.1\|1288254_1288929_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	3.9e-06	25.9
AXL37509.1\|1288916_1289522_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
AXL37510.1\|1289509_1290529_-	dehydrogenase	A0A222YW25	Synechococcus_phage	1.6e-59	40.5
AXL37511.1\|1290525_1291557_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.5e-146	73.6
AXL37512.1\|1291553_1292717_-	pyridoxamine 5-phosphate oxidase	A0A218MN59	uncultured_virus	7.3e-45	29.9
AXL37513.1\|1292717_1293764_-	GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase	M1HKX0	Paramecium_bursaria_Chlorella_virus	8.6e-69	43.4
AXL37514.1\|1293763_1294324_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	5.0e-15	31.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage