CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP012217	Campylobacter jejuni strain CJ071CC464, complete genome	1 crisprs	DEDDh,cas14j,cas2,cas1,csa3	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP012217_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012217_1

1664925-1665030

Unclear

Consensus_repeat	Method
TTTATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CRISPRCasFinder

1 spacers

cas2,cas1

The CRISPR arrays of CP012217_1

>merge|CP012217|1|1664925-1665030|CRISPRCasFinder
TTTATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAAATGAAAAAAAAGTTTAAAGATAGCTTTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>CP012217|1|1|1664925-1665030|CRISPRCasFinder
TTTATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	AATGAAAAAAAAGTTTAAAGATAGCT
TTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
CP012217.1\|AXL42834.1\|1672626_1673616_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP012217.1\|AXL42828.1\|1665173_1665605_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP012217.1\|AXL42825.1\|1662945_1663167_+\|molybdenum-cofactor-biosynthesis-protein-MoaD	unknown	unknown	gnl\|CDD\|224888
CP012217.1\|AXL42829.1\|1665597_1666488_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP012217.1\|AXL42832.1\|1670527_1670749_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182621
CP012217.1\|AXL42819.1\|1655505_1656147_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|319893
CP012217.1\|AXL42833.1\|1672417_1672630_-\|hypothetical-protein	unknown	unknown	unknown
CP012217.1\|AXL42827.1\|1663617_1664808_+\|molybdenum-cofactor-biosynthesis-protein-MoaA	unknown	unknown	gnl\|CDD\|223380
CP012217.1\|AXL42820.1\|1656143_1658357_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|239153
CP012217.1\|AXL42836.1\|1674278_1675028_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
CP012217.1\|AXL42826.1\|1663167_1663614_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
CP012217.1\|AXL42831.1\|1670211_1670535_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225611
CP012217.1\|AXL42821.1\|1658405_1658948_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|239153
CP012217.1\|AXL42823.1\|1660130_1661279_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
CP012217.1\|AXL42835.1\|1673676_1674282_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP012217.1\|AXL42822.1\|1658947_1659139_-\|Tat-pathway-signal-protein	unknown	unknown	gnl\|CDD\|236534
CP012217.1\|AXL42921.1\|1671192_1672095_-\|hypothetical-protein	unknown	unknown	unknown
CP012217.1\|AXL42830.1\|1669981_1670194_+\|hypothetical-protein	unknown	unknown	unknown
CP012217.1\|AXL42824.1\|1661402_1662944_+\|bilirubin-oxidase	unknown	unknown	gnl\|CDD\|225043
CP012217.1\|AXL42920.1\|1659113_1659815_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916

Protein	Function_ID	Function_description	E-value
CP012217.1\|AXL42828.1\|1665173_1665605_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
CP012217.1\|AXL42825.1\|1662945_1663167_+\|molybdenum-cofactor-biosynthesis-protein-MoaD	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
CP012217.1\|AXL42829.1\|1665597_1666488_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.42012e-120
CP012217.1\|AXL42832.1\|1670527_1670749_+\|hypothetical-protein	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0.00904344
CP012217.1\|AXL42819.1\|1655505_1656147_-\|formate-dehydrogenase	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
CP012217.1\|AXL42827.1\|1663617_1664808_+\|molybdenum-cofactor-biosynthesis-protein-MoaA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	7.93699e-140
CP012217.1\|AXL42820.1\|1656143_1658357_-\|formate-dehydrogenase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	4.07231e-154
CP012217.1\|AXL42836.1\|1674278_1675028_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	8.72225e-93
CP012217.1\|AXL42826.1\|1663167_1663614_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.7419e-44
CP012217.1\|AXL42831.1\|1670211_1670535_+\|hypothetical-protein	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	1.37131e-06
CP012217.1\|AXL42821.1\|1658405_1658948_-\|formate-dehydrogenase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	9.0213e-62
CP012217.1\|AXL42823.1\|1660130_1661279_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
CP012217.1\|AXL42835.1\|1673676_1674282_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.32317e-69
CP012217.1\|AXL42822.1\|1658947_1659139_-\|Tat-pathway-signal-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00537271
CP012217.1\|AXL42834.1\|1672626_1673616_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP012217.1\|AXL42824.1\|1661402_1662944_+\|bilirubin-oxidase	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.00536e-119
CP012217.1\|AXL42920.1\|1659113_1659815_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000549526

>CP012217.1|AXL42827.1|1663617_1664808_+|molybdenum-cofactor-biosynthesis-protein-MoaA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGITPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENICIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDIIFMP
>CP012217.1|AXL42826.1|1663167_1663614_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDISKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>CP012217.1|AXL42825.1|1662945_1663167_+|molybdenum-cofactor-biosynthesis-protein-MoaD
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>CP012217.1|AXL42824.1|1661402_1662944_+|bilirubin-oxidase
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINYDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFKIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRAEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>CP012217.1|AXL42823.1|1660130_1661279_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN
>CP012217.1|AXL42920.1|1659113_1659815_-|hypothetical-protein
MDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>CP012217.1|AXL42822.1|1658947_1659139_-|Tat-pathway-signal-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWEKYYIKAE
>CP012217.1|AXL42821.1|1658405_1658948_-|formate-dehydrogenase
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARI
>CP012217.1|AXL42820.1|1656143_1658357_-|formate-dehydrogenase
MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>CP012217.1|AXL42819.1|1655505_1656147_-|formate-dehydrogenase
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>CP012217.1|AXL42828.1|1665173_1665605_-|CRISPR-associated-protein-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>CP012217.1|AXL42829.1|1665597_1666488_-|CRISPR-associated-protein-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQASLSSALFNAFARHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQINVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFKNSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>CP012217.1|AXL42830.1|1669981_1670194_+|hypothetical-protein
MALKIVISSYAELLLLLLACMYPVLISLKIRPITTVCALSLIALDYDPKDGNSINMADMVGQSDNVVRLF
>CP012217.1|AXL42831.1|1670211_1670535_+|hypothetical-protein
MITYVVIIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYTLFPWLPVIFLFIAYFFTIKLDVVIANFVRISLVFLVEFARHRNVRKLGEDMMVILKGYG
>CP012217.1|AXL42832.1|1670527_1670749_+|hypothetical-protein
MAEIFISVVSIIIAAGVCAKGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFANAILNRICIKI
>CP012217.1|AXL42921.1|1671192_1672095_-|hypothetical-protein
MAIAIFLVLHFAILALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGLVFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILNLLVLTFSFILEVISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIWQGLSVFGSHLLFIPDFMVDQPPEIIYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLIFAFYVCIKILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLMLKGQKNVKIC
>CP012217.1|AXL42833.1|1672417_1672630_-|hypothetical-protein
MKTNYYDYLCAKMYVILPIKAHKDKLKFYLSYVNKKDKIFRVNVWKWAVLIKIAKDDKTKYFCSNVLNKG
>CP012217.1|AXL42834.1|1672626_1673616_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>CP012217.1|AXL42835.1|1673676_1674282_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLDSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>CP012217.1|AXL42836.1|1674278_1675028_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP012217_1	1.1\|1664965\|26\|CP012217\|CRISPRCasFinder	1664965-1664990	26	MN530981	Campylobacter phage DA10, complete genome	14803-14828	0	1.0
CP012217_1	1.1\|1664965\|26\|CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	795123-795148	5	0.808
CP012217_1	1.1\|1664965\|26\|CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP040856	Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence	90292-90317	5	0.808
CP012217_1	1.1\|1664965\|26\|CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP026733	Shigella boydii strain ATCC 8700 plasmid unnamed2, complete sequence	50101-50126	5	0.808
CP012217_1	1.1\|1664965\|26\|CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP026794	Shigella flexneri strain 74-1170 plasmid unnamed	250198-250223	5	0.808
CP012217_1	1.1\|1664965\|26\|CP012217\|CRISPRCasFinder	1664965-1664990	26	NC_014025	Bacillus megaterium QM B1551 plasmid pBM500, complete sequence	13249-13274	5	0.808
CP012217_1	1.1\|1664965\|26\|CP012217\|CRISPRCasFinder	1664965-1664990	26	KF302034	UNVERIFIED: Pseudoalteromonas phage HM1, complete genome	58041-58066	5	0.808

1. spacer 1.1|1664965|26|CP012217|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
aatgaaaaaaaagtttaaagatagct	Protospacer
**************************

2. spacer 1.1|1664965|26|CP012217|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
catgagaaaaaagtttaaagataaag	Protospacer
 ****.*****************.

3. spacer 1.1|1664965|26|CP012217|CRISPRCasFinder matches to NZ_CP040856 (Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
aatgaaaaaaaagtttaaatatccgc	Protospacer
******************* **   .

4. spacer 1.1|1664965|26|CP012217|CRISPRCasFinder matches to NZ_CP026733 (Shigella boydii strain ATCC 8700 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
gatgaaaaaaaatttaaaagatagtg	Protospacer
.*********** ** ********.

5. spacer 1.1|1664965|26|CP012217|CRISPRCasFinder matches to NZ_CP026794 (Shigella flexneri strain 74-1170 plasmid unnamed) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
gatgaaaaaaaatttaaaagatagtg	Protospacer
.*********** ** ********.

6. spacer 1.1|1664965|26|CP012217|CRISPRCasFinder matches to NC_014025 (Bacillus megaterium QM B1551 plasmid pBM500, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
aatgaaaaaagagtttaaagacataa	Protospacer
**********.**********.*

7. spacer 1.1|1664965|26|CP012217|CRISPRCasFinder matches to KF302034 (UNVERIFIED: Pseudoalteromonas phage HM1, complete genome) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
catgaagaaaaagtttaaagatgaat	Protospacer
 *****.***************.. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

166113 : 256204

109

Campylobacter_phage(46.15%)

protease,integrase,bacteriocin,plate,tail

attL 167464:167481|attR 258014:258031

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL41381.1\|166113_166245_+\|protease	serine protease	NA	NA	NA	NA
AXL41382.1\|166325_167354_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
AXL41383.1\|167363_167810_+	GCN5 family acetyltransferase	NA	NA	NA	NA
167464:167481	attL	NA	NA	NA	NA
AXL41384.1\|167819_168659_+	acetylglutamate kinase	NA	NA	NA	NA
AXL41385.1\|168668_169850_+	acetylornithine aminotransferase	A0A1V0SKB7	Klosneuvirus	6.1e-39	31.8
AXL41386.1\|169869_170499_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-21	36.5
AXL41387.1\|170587_171136_+	acetyltransferase	NA	NA	NA	NA
AXL41388.1\|171104_172475_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.0e-94	42.6
AXL41389.1\|172464_173487_-	ribonucleotide-diphosphate reductase subunit beta	A2PYN0	Cyanophage	2.9e-45	33.7
AXL41390.1\|173500_173911_-	hypothetical protein	NA	NA	NA	NA
AXL41391.1\|173911_174520_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
AXL41392.1\|174522_175080_-	ribosome recycling factor	NA	NA	NA	NA
AXL41393.1\|175095_175467_-	preprotein translocase subunit SecG	NA	NA	NA	NA
AXL41394.1\|175569_176265_-	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.6e-15	32.5
AXL41395.1\|176425_177058_+	carbonic anhydrase	NA	NA	NA	NA
AXL41396.1\|177057_178941_+	mechanosensitive ion channel protein	NA	NA	NA	NA
AXL41397.1\|178963_179935_-	nitrogen fixation protein NifU	A0A1B1IT19	uncultured_Mediterranean_phage	1.6e-13	37.6
AXL41398.1\|179944_181126_-	cysteine desulfurase	H7BUW1	unidentified_phage	2.1e-31	37.1
AXL41399.1\|181303_181705_-	bacteriohemerythrin	NA	NA	NA	NA
AXL41400.1\|181841_183008_-	hypothetical protein	NA	NA	NA	NA
AXL41401.1\|183166_183358_+	50S ribosomal protein L35	NA	NA	NA	NA
AXL41402.1\|183451_183805_+	50S ribosomal protein L20	NA	NA	NA	NA
AXL41403.1\|185423_186281_+	hypothetical protein	NA	NA	NA	NA
AXL41404.1\|186311_186788_+	cysteine permease	NA	NA	NA	NA
AXL41405.1\|186756_188067_-\|integrase	integrase	NA	NA	NA	NA
AXL41406.1\|188050_188227_-	highly acidic protein	NA	NA	NA	NA
AXL41407.1\|188319_188793_+	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA
AXL41408.1\|188770_189034_+	hypothetical protein	NA	NA	NA	NA
AXL41409.1\|189047_190184_+	hypothetical protein	NA	NA	NA	NA
AXL41410.1\|190202_190961_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	1.8e-31	34.5
AXL41411.1\|191078_192617_+	sulfatase	NA	NA	NA	NA
AXL41412.1\|192613_192970_+	DeoR faimly transcriptional regulator	NA	NA	NA	NA
AXL41413.1\|192966_193194_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AXL41414.1\|193203_194199_+	dihydroorotase	NA	NA	NA	NA
AXL41415.1\|194208_197358_+	DNA methyltransferase	NA	NA	NA	NA
AXL41416.1\|197363_198074_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AXL41417.1\|198154_198334_-	hypothetical protein	NA	NA	NA	NA
AXL41418.1\|200746_201385_-	hypothetical protein	NA	NA	NA	NA
AXL41419.1\|201378_201714_-	hypothetical protein	NA	NA	NA	NA
AXL41420.1\|201723_202029_-	hypothetical protein	NA	NA	NA	NA
AXL41421.1\|202079_202871_-	hypothetical protein	NA	NA	NA	NA
AXL41422.1\|202915_203299_-	hypothetical protein	NA	NA	NA	NA
AXL41423.1\|203450_203999_+	hypothetical protein	NA	NA	NA	NA
AXL41424.1\|204441_206127_+	hypothetical protein	X2KLG0	Campylobacter_phage	7.3e-86	38.1
AXL41425.1\|206206_206836_+	repressor	A7YGK7	Campylobacter_phage	2.6e-60	100.0
AXL41426.1\|206916_207237_+	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
AXL41427.1\|207246_207441_+	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
AXL41428.1\|207520_207808_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
AXL42893.1\|207835_208651_-	DNA adenine methylase	A7YGG5	Campylobacter_phage	4.1e-151	99.6
AXL41429.1\|208755_209244_-	virion morphogenesis protein	A7YG96	Campylobacter_phage	1.6e-89	100.0
AXL41430.1\|209247_211470_-\|tail	tail tape measure protein	A7YG97	Campylobacter_phage	0.0e+00	99.9
AXL41431.1\|211511_211817_+	hypothetical protein	A7YGX3	Campylobacter_phage	2.7e-39	100.0
AXL41432.1\|211928_212168_-	hypothetical protein	A7YGZ3	Campylobacter_phage	3.2e-11	62.5
AXL41433.1\|212272_212782_-\|tail	phage tail protein	A7YG76	Campylobacter_phage	9.5e-90	98.8
AXL41434.1\|212808_214002_-\|tail	phage tail protein	A7YGA3	Campylobacter_phage	7.2e-197	99.5
AXL41435.1\|214012_215026_-	hypothetical protein	A7YGY4	Campylobacter_phage	2.9e-191	99.4
AXL41436.1\|215125_215497_-	hypothetical protein	A7YGF6	Campylobacter_phage	5.7e-68	100.0
AXL41437.1\|215493_216000_-	hypothetical protein	A7YGA6	Campylobacter_phage	1.4e-85	97.6
AXL41438.1\|216009_217089_-\|tail	phage tail protein	A7YGV0	Campylobacter_phage	5.1e-149	99.3
AXL41439.1\|217088_217709_-\|tail	phage tail protein	A7YGM6	Campylobacter_phage	2.8e-59	97.4
AXL41440.1\|217705_218872_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
AXL41441.1\|218868_219159_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
AXL41442.1\|219155_219347_-	hypothetical protein	NA	NA	NA	NA
AXL41443.1\|219355_219988_-\|plate	baseplate assembly protein	V5YUM9	Pseudomonas_phage	4.6e-09	35.6
AXL41444.1\|219987_220302_-	hypothetical protein	NA	NA	NA	NA
AXL41445.1\|220413_220662_-	hypothetical protein	NA	NA	NA	NA
AXL41446.1\|220658_221000_-	hypothetical protein	NA	NA	NA	NA
AXL41447.1\|221010_221400_-	peptidase M15 family protein	A0A1X9Q0V8	Human_gokushovirus	1.7e-22	46.7
AXL41448.1\|221548_221983_+	hypothetical protein	NA	NA	NA	NA
AXL41449.1\|221984_222800_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
AXL41450.1\|222802_223330_+	hypothetical protein	NA	NA	NA	NA
AXL41451.1\|223332_224310_+	hypothetical protein	R9TRN2	Rhizobium_phage	2.5e-06	23.4
AXL41452.1\|224424_224883_+	hypothetical protein	NA	NA	NA	NA
AXL41453.1\|224875_225475_+	hypothetical protein	NA	NA	NA	NA
AXL41454.1\|225474_227145_+	hypothetical protein	H1ZZE1	Pseudomonas_virus	1.5e-91	41.2
AXL41455.1\|227154_228525_+	hypothetical protein	A0A2H4JHL1	uncultured_Caudovirales_phage	5.8e-17	26.6
AXL41456.1\|228526_229765_+	hypothetical protein	M4M9M5	Vibrio_phage	1.9e-19	29.8
AXL41457.1\|229890_230265_+\|tail	phage tail protein	NA	NA	NA	NA
AXL41458.1\|230257_230449_+\|tail	phage tail protein	NA	NA	NA	NA
AXL41459.1\|230442_231420_+\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
AXL41460.1\|231416_231701_-	DNA-binding protein	NA	NA	NA	NA
AXL41461.1\|231794_232466_+	deoxyribonuclease	NA	NA	NA	NA
AXL41462.1\|232457_232733_-	hypothetical protein	NA	NA	NA	NA
AXL41463.1\|232779_233229_-	hypothetical protein	NA	NA	NA	NA
AXL41464.1\|233225_233918_-	hypothetical protein	NA	NA	NA	NA
AXL41465.1\|233917_234187_-	hypothetical protein	NA	NA	NA	NA
AXL41466.1\|234183_235146_-	hypothetical protein	NA	NA	NA	NA
AXL41467.1\|235204_235690_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	6.4e-19	33.3
AXL41468.1\|235796_236138_-	hypothetical protein	NA	NA	NA	NA
AXL41469.1\|236270_236456_-	hypothetical protein	NA	NA	NA	NA
AXL41470.1\|236452_236644_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AXL41471.1\|236646_237570_-\|bacteriocin	bacteriocin	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
AXL41472.1\|237740_239816_-\|integrase	integrase	NA	NA	NA	NA
AXL41473.1\|239812_240013_-	hypothetical protein	NA	NA	NA	NA
AXL41474.1\|240162_240837_+	signal peptidase	X2KRC9	Campylobacter_phage	9.8e-26	32.1
AXL42894.1\|240836_241535_+	hypothetical protein	NA	NA	NA	NA
AXL41475.1\|243510_244179_-	hypothetical protein	NA	NA	NA	NA
AXL41476.1\|244293_244707_-	DNA-binding protein	NA	NA	NA	NA
AXL41477.1\|244703_245576_-	hypothetical protein	NA	NA	NA	NA
AXL41478.1\|248670_249180_-	hypothetical protein	NA	NA	NA	NA
AXL41479.1\|249179_249710_-	hypothetical protein	NA	NA	NA	NA
AXL41480.1\|249721_250810_-	hypothetical protein	NA	NA	NA	NA
AXL41481.1\|250822_251737_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA
AXL41482.1\|251912_252119_+	tautomerase	NA	NA	NA	NA
AXL41483.1\|252115_252571_+	peroxiredoxin	NA	NA	NA	NA
AXL41484.1\|252570_253662_+	diacylglucosamine hydrolase like protein	NA	NA	NA	NA
AXL41485.1\|253756_254197_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AXL41486.1\|254196_254988_+	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA
AXL41487.1\|254980_256204_+\|protease	Clp protease ClpX	G3M9Z9	Bacillus_virus	4.4e-117	54.5
258014:258031	attR	NA	NA	NA	NA

DBSCAN-SWA_2

788126 : 797127

Acinetobacter_phage(83.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL42012.1\|788126_789917_-	peptidase M24	A0A0P0I8D7	Acinetobacter_phage	1.2e-160	47.6
AXL42013.1\|789932_791486_-	amino acid transporter	A0A0P0IY73	Acinetobacter_phage	2.4e-128	47.7
AXL42014.1\|791684_792107_-	hypothetical protein	A0A0P0IY73	Acinetobacter_phage	1.7e-28	50.8
AXL42015.1\|792049_792364_-	amino acid transporter	A0A0P0IY73	Acinetobacter_phage	1.6e-15	44.6
AXL42902.1\|792402_792603_-	di-/tripeptide transporter domain protein	NA	NA	NA	NA
AXL42016.1\|792764_793175_-	amino acid transporter	A0A0P0IY73	Acinetobacter_phage	2.1e-26	48.5
AXL42017.1\|793301_793850_-	hypothetical protein	NA	NA	NA	NA
AXL42018.1\|793842_794946_-	hypothetical protein	NA	NA	NA	NA
AXL42019.1\|794935_795811_-	GTPase Era	NA	NA	NA	NA
AXL42020.1\|795807_797127_-\|protease	ATP-dependent protease	A0A191ZC11	Erwinia_phage	6.2e-40	28.6

DBSCAN-SWA_3

1572663 : 1579299

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL42740.1\|1572663_1573329_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
AXL42741.1\|1573316_1573922_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
AXL42742.1\|1573909_1574929_-	dehydrogenase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
AXL42919.1\|1574948_1575440_-	hypothetical protein	NA	NA	NA	NA
AXL42743.1\|1575818_1576760_-	hypothetical protein	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
AXL42744.1\|1576783_1577824_-	GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase	M1HWW2	Paramecium_bursaria_Chlorella_virus	2.9e-69	44.1
AXL42745.1\|1577823_1578750_-	hypothetical protein	NA	NA	NA	NA
AXL42746.1\|1578753_1579299_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage