CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP012221	Campylobacter jejuni strain CJ018CCUA, complete genome	1 crisprs	DEDDh,WYL,c2c9_V-U4,cas2,cas1,cas9,csa3	0	15	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP012221_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012221_1

1537972-1538404

orTypeII

Consensus_repeat	Method
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

6 spacers

cas2,cas1,cas9

The CRISPR arrays of CP012221_1

>merge|CP012221|1|1537972-1538404|CRISPRCasFinder,CRT,PILER-CR
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTTGTTGAGTGGGTTATGAGCCAAAATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTACCCCTATCCACAACCGCCAAGTGATTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATGAGTTATCAAGTTTTTGTATTTAGCAGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCAAAGTGCTGAAAAAGATAGAAACTTACTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCAGAGATAACGAGTTTAATTACACTAGAGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCATTATTTATAATACTATCACTTGCCAAAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>CP012221|1|1|1537972-1538404|CRISPRCasFinder
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTGTTGAGTGGGTTATGAGCCAAAATA
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACCCCTATCCACAACCGCCAAGTGATT
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTATTTAGCA
GGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGTGCTGAAAAAGATAGAAACTTACT
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAGAGATAACGAGTTTAATTACACTAGAG
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CATTATTTATAATACTATCACTTGCCAAA
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>CP012221|1|1|1537973-1538404|CRT
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTGTTGAGTGGGTTATGAGCCAAAATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACCCCTATCCACAACCGCCAAGTGATTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTATTTAGCAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGTGCTGAAAAAGATAGAAACTTACTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAGAGATAACGAGTTTAATTACACTAGAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CATTATTTATAATACTATCACTTGCCAAAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>CP012221|1|1|1537974-1538404|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTGTTGAGTGGGTTATGAGCCAAAATAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACCCCTATCCACAACCGCCAAGTGATTAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTATTTAGCAGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGTGCTGAAAAAGATAGAAACTTACTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAGAGATAACGAGTTTAATTACACTAGAGAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CATTATTTATAATACTATCACTTGCCAAAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP012221.1\|AXL45952.1\|1533175_1534324_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
CP012221.1\|AXL45951.1\|1531991_1532183_-\|Tat-pathway-signal-protein	unknown	unknown	gnl\|CDD\|236534
CP012221.1\|AXL45950.1\|1531449_1531992_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|239153
CP012221.1\|AXL45957.1\|1538548_1538980_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP012221.1\|AXL45958.1\|1538972_1539863_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP012221.1\|AXL45953.1\|1534447_1535989_+\|bilirubin-oxidase	unknown	unknown	gnl\|CDD\|225043
CP012221.1\|AXL45954.1\|1535990_1536212_+\|molybdenum-cofactor-biosynthesis-protein-MoaD	unknown	unknown	gnl\|CDD\|224888
CP012221.1\|AXL45960.1\|1543021_1543204_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182621
CP012221.1\|AXL45961.1\|1546442_1546655_-\|hypothetical-protein	unknown	unknown	unknown
CP012221.1\|AXL45964.1\|1548303_1549053_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
CP012221.1\|AXL45956.1\|1536662_1537853_+\|molybdenum-cofactor-biosynthesis-protein-MoaA	unknown	unknown	gnl\|CDD\|223380
CP012221.1\|AXL45955.1\|1536212_1536659_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
CP012221.1\|AXL45959.1\|1539859_1542814_-\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
CP012221.1\|AXL45963.1\|1547701_1548307_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP012221.1\|AXL45965.1\|1549027_1549759_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
CP012221.1\|AXL45949.1\|1529187_1531401_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|239153
CP012221.1\|AXL45948.1\|1528549_1529191_-\|formate-dehydrogenase	unknown	unknown	gnl\|CDD\|319893
CP012221.1\|AXL46240.1\|1545217_1546120_-\|hypothetical-protein	unknown	unknown	unknown
CP012221.1\|AXL46239.1\|1532157_1532859_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
CP012221.1\|AXL45962.1\|1546651_1547641_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439

Protein	Function_ID	Function_description	E-value
CP012221.1\|AXL45952.1\|1533175_1534324_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
CP012221.1\|AXL45951.1\|1531991_1532183_-\|Tat-pathway-signal-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
CP012221.1\|AXL45950.1\|1531449_1531992_-\|formate-dehydrogenase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	9.0213e-62
CP012221.1\|AXL45957.1\|1538548_1538980_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59
CP012221.1\|AXL45958.1\|1538972_1539863_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
CP012221.1\|AXL45953.1\|1534447_1535989_+\|bilirubin-oxidase	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.61372e-118
CP012221.1\|AXL45954.1\|1535990_1536212_+\|molybdenum-cofactor-biosynthesis-protein-MoaD	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
CP012221.1\|AXL45960.1\|1543021_1543204_+\|hypothetical-protein	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0.000391506
CP012221.1\|AXL45956.1\|1536662_1537853_+\|molybdenum-cofactor-biosynthesis-protein-MoaA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
CP012221.1\|AXL45955.1\|1536212_1536659_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.09823e-44
CP012221.1\|AXL45959.1\|1539859_1542814_-\|CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
CP012221.1\|AXL45964.1\|1548303_1549053_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	5.79643e-93
CP012221.1\|AXL45965.1\|1549027_1549759_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	3.34939e-100
CP012221.1\|AXL45949.1\|1529187_1531401_-\|formate-dehydrogenase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.72341e-154
CP012221.1\|AXL45948.1\|1528549_1529191_-\|formate-dehydrogenase	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
CP012221.1\|AXL45963.1\|1547701_1548307_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	8.24028e-70
CP012221.1\|AXL46239.1\|1532157_1532859_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000549526
CP012221.1\|AXL45962.1\|1546651_1547641_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0

>CP012221.1|AXL45956.1|1536662_1537853_+|molybdenum-cofactor-biosynthesis-protein-MoaA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>CP012221.1|AXL45955.1|1536212_1536659_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>CP012221.1|AXL45954.1|1535990_1536212_+|molybdenum-cofactor-biosynthesis-protein-MoaD
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>CP012221.1|AXL45953.1|1534447_1535989_+|bilirubin-oxidase
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLVPKQFPQGEILKALPLLKNKSKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLTGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVKLPKKIKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>CP012221.1|AXL45952.1|1533175_1534324_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>CP012221.1|AXL46239.1|1532157_1532859_-|hypothetical-protein
MDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>CP012221.1|AXL45951.1|1531991_1532183_-|Tat-pathway-signal-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>CP012221.1|AXL45950.1|1531449_1531992_-|formate-dehydrogenase
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARI
>CP012221.1|AXL45949.1|1529187_1531401_-|formate-dehydrogenase
MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEALEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>CP012221.1|AXL45948.1|1528549_1529191_-|formate-dehydrogenase
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>CP012221.1|AXL45957.1|1538548_1538980_-|CRISPR-associated-protein-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>CP012221.1|AXL45958.1|1538972_1539863_-|CRISPR-associated-protein-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>CP012221.1|AXL45959.1|1539859_1542814_-|CRISPR-associated-protein
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIVKRRGYDDIKNSDDKEKGTILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDCLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>CP012221.1|AXL45960.1|1543021_1543204_+|hypothetical-protein
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKTPSREYTSF
>CP012221.1|AXL46240.1|1545217_1546120_-|hypothetical-protein
MAIAIFLVLHFAILALIFPFLKAFYYEIARATKQKYFTYAFNTFYLGLLALIIGIGLVFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILNLLVLTFSFILEIISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIWQGLSVFGSHLLFIPDFMVDQPPEIVYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLIFAFYVCIEILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLMLKGQKNVKIC
>CP012221.1|AXL45961.1|1546442_1546655_-|hypothetical-protein
MKTNYYDYLCAKMYVILPIKAHKDKLKFYLSYVNKKDKIFRVNVWKWAVLIKIAKDDKTKYFCSNVLNKG
>CP012221.1|AXL45962.1|1546651_1547641_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>CP012221.1|AXL45963.1|1547701_1548307_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGKIVFNNKEAKKILENFTHPKIRAKILEQIQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>CP012221.1|AXL45964.1|1548303_1549053_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINLNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNQKVQNKIKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>CP012221.1|AXL45965.1|1549027_1549759_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQFFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP012221_1	1.2\|1538075\|29\|CP012221\|CRISPRCasFinder	1538075-1538103	29	MN530981	Campylobacter phage DA10, complete genome	14886-14914	0	1.0
CP012221_1	1.3\|1538141\|29\|CP012221\|CRISPRCasFinder	1538141-1538169	29	MN530981	Campylobacter phage DA10, complete genome	1729-1757	0	1.0
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	MN530981	Campylobacter phage DA10, complete genome	34982-35010	0	1.0
CP012221_1	1.8\|1538075\|30\|CP012221\|CRT	1538075-1538104	30	MN530981	Campylobacter phage DA10, complete genome	14886-14915	0	1.0
CP012221_1	1.9\|1538141\|30\|CP012221\|CRT	1538141-1538170	30	MN530981	Campylobacter phage DA10, complete genome	1728-1757	0	1.0
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	MN530981	Campylobacter phage DA10, complete genome	34981-35010	0	1.0
CP012221_1	1.14\|1538075\|31\|CP012221\|PILER-CR	1538075-1538105	31	MN530981	Campylobacter phage DA10, complete genome	14886-14916	1	0.968
CP012221_1	1.15\|1538141\|31\|CP012221\|PILER-CR	1538141-1538171	31	MN530981	Campylobacter phage DA10, complete genome	1727-1757	1	0.968
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	MN530981	Campylobacter phage DA10, complete genome	34980-35010	1	0.968
CP012221_1	1.6\|1538339\|29\|CP012221\|CRISPRCasFinder	1538339-1538367	29	MN530981	Campylobacter phage DA10, complete genome	18503-18531	2	0.931
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	MN530981	Campylobacter phage DA10, complete genome	18503-18532	2	0.933
CP012221_1	1.1\|1538009\|29\|CP012221\|CRISPRCasFinder	1538009-1538037	29	JX560521	Acinetobacter phage phiAC-1, complete genome	6842-6870	3	0.897
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	MN530981	Campylobacter phage DA10, complete genome	18503-18533	3	0.903
CP012221_1	1.3\|1538141\|29\|CP012221\|CRISPRCasFinder	1538141-1538169	29	AF440571	Sulfolobus islandicus filamentous virus, partial genome	11644-11672	5	0.828
CP012221_1	1.3\|1538141\|29\|CP012221\|CRISPRCasFinder	1538141-1538169	29	AP013610	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, * SEQUENCING IN PROGRESS *	6962-6990	6	0.793
CP012221_1	1.3\|1538141\|29\|CP012221\|CRISPRCasFinder	1538141-1538169	29	KX467643	Sulfolobus islandicus filamentous virus 2, complete genome	10552-10580	6	0.793
CP012221_1	1.6\|1538339\|29\|CP012221\|CRISPRCasFinder	1538339-1538367	29	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	37160-37188	6	0.793
CP012221_1	1.7\|1538009\|30\|CP012221\|CRT	1538009-1538038	30	JX560521	Acinetobacter phage phiAC-1, complete genome	6842-6871	6	0.8
CP012221_1	1.9\|1538141\|30\|CP012221\|CRT	1538141-1538170	30	AF440571	Sulfolobus islandicus filamentous virus, partial genome	11644-11673	6	0.8
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	37160-37189	6	0.8
CP012221_1	1.15\|1538141\|31\|CP012221\|PILER-CR	1538141-1538171	31	AF440571	Sulfolobus islandicus filamentous virus, partial genome	11644-11674	6	0.806
CP012221_1	1.9\|1538141\|30\|CP012221\|CRT	1538141-1538170	30	AP013610	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, * SEQUENCING IN PROGRESS *	6961-6990	7	0.767
CP012221_1	1.9\|1538141\|30\|CP012221\|CRT	1538141-1538170	30	KX467643	Sulfolobus islandicus filamentous virus 2, complete genome	10552-10581	7	0.767
CP012221_1	1.13\|1538009\|31\|CP012221\|PILER-CR	1538009-1538039	31	JX560521	Acinetobacter phage phiAC-1, complete genome	6842-6872	7	0.774
CP012221_1	1.3\|1538141\|29\|CP012221\|CRISPRCasFinder	1538141-1538169	29	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	38343-38371	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	MN172529	Listeria phage LP-039, complete genome	15314-15342	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	MG649967	Vibrio virus Thalassa, complete genome	82306-82334	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	MT178766	Listeria virus P100plus, complete genome	117318-117346	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	DQ003638	Listeria phage A511, complete genome	15838-15866	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	MT178767	Listeria virus P200, complete genome	117319-117347	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	DQ004855	Listeria bacteriophage P100, complete genome	113673-113701	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	KJ094033	Listeria phage LP-048, complete genome	17768-17796	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	NC_042095	Vibrio phage Thalassa, complete genome	82306-82334	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	15796-15824	8	0.724
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	MT448617	Vibrio phage River4, complete genome	82097-82125	8	0.724
CP012221_1	1.6\|1538339\|29\|CP012221\|CRISPRCasFinder	1538339-1538367	29	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	573502-573530	8	0.724
CP012221_1	1.6\|1538339\|29\|CP012221\|CRISPRCasFinder	1538339-1538367	29	MF033351	Acinetobacter phage vB_ApiP_P2, complete genome	36349-36377	8	0.724
CP012221_1	1.6\|1538339\|29\|CP012221\|CRISPRCasFinder	1538339-1538367	29	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	158838-158866	8	0.724
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	MG649967	Vibrio virus Thalassa, complete genome	82306-82335	8	0.733
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	NC_042095	Vibrio phage Thalassa, complete genome	82306-82335	8	0.733
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	MT448617	Vibrio phage River4, complete genome	82097-82126	8	0.733
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	573502-573531	8	0.733
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	158837-158866	8	0.733
CP012221_1	1.15\|1538141\|31\|CP012221\|PILER-CR	1538141-1538171	31	AP013610	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, * SEQUENCING IN PROGRESS *	6960-6990	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	MG649967	Vibrio virus Thalassa, complete genome	82306-82336	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NC_042095	Vibrio phage Thalassa, complete genome	82306-82336	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	MT448617	Vibrio phage River4, complete genome	82097-82127	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	20424-20454	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	29785-29815	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047427	Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence	21728-21758	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NZ_CP053310	Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence	27-57	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NC_007389	Spiroplasma citri pSci3 plasmid	4230-4260	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NC_007392	Spiroplasma citri plasmid pSci6	28463-28493	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047431	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence	26752-26782	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NZ_CP046369	Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence	46608-46638	8	0.742
CP012221_1	1.16\|1538207\|31\|CP012221\|PILER-CR	1538207-1538237	31	NZ_CP042474	Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence	7062-7092	8	0.742
CP012221_1	1.4\|1538207\|29\|CP012221\|CRISPRCasFinder	1538207-1538235	29	CAJDKB010000002	Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence	26456-26484	9	0.69
CP012221_1	1.9\|1538141\|30\|CP012221\|CRT	1538141-1538170	30	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	38343-38372	9	0.7
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	MN172529	Listeria phage LP-039, complete genome	15313-15342	9	0.7
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	MT178766	Listeria virus P100plus, complete genome	117317-117346	9	0.7
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	DQ003638	Listeria phage A511, complete genome	15837-15866	9	0.7
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	MT178767	Listeria virus P200, complete genome	117318-117347	9	0.7
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	DQ004855	Listeria bacteriophage P100, complete genome	113672-113701	9	0.7
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	KJ094033	Listeria phage LP-048, complete genome	17767-17796	9	0.7
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	15795-15824	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP045828	Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence	12379-12408	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP047380	Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence	13697-13726	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP024617	Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence	51897-51926	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP023674	Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence	76346-76375	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	MF033351	Acinetobacter phage vB_ApiP_P2, complete genome	36349-36378	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP038393	Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence	39175-39204	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP024055	Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence	61977-62006	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_CP027589	Escherichia coli strain 2014C-3011 plasmid unnamed1	20377-20406	9	0.7
CP012221_1	1.12\|1538339\|30\|CP012221\|CRT	1538339-1538368	30	NZ_AP014804	Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence	46574-46603	9	0.7
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP045828	Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence	12379-12409	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP047380	Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence	13697-13727	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP024617	Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence	51897-51927	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP023674	Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence	76346-76376	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP038393	Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence	39174-39204	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP024055	Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence	61976-62006	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP027589	Escherichia coli strain 2014C-3011 plasmid unnamed1	20376-20406	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_AP014804	Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence	46573-46603	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	573502-573532	9	0.71
CP012221_1	1.18\|1538339\|31\|CP012221\|PILER-CR	1538339-1538369	31	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	158836-158866	9	0.71
CP012221_1	1.10\|1538207\|30\|CP012221\|CRT	1538207-1538236	30	CAJDKB010000002	Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence	26455-26484	10	0.667
CP012221_1	1.15\|1538141\|31\|CP012221\|PILER-CR	1538141-1538171	31	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	38343-38373	10	0.677

1. spacer 1.2|1538075|29|CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacccctatccacaaccgccaagtgatt	CRISPR spacer
ctacccctatccacaaccgccaagtgatt	Protospacer
*****************************

2. spacer 1.3|1538141|29|CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatgagttatcaagtttttgtatttagca	CRISPR spacer
tatgagttatcaagtttttgtatttagca	Protospacer
*****************************

3. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaagtgctgaaaaagatagaaacttact	Protospacer
*****************************

4. spacer 1.8|1538075|30|CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacccctatccacaaccgccaagtgatta	CRISPR spacer
ctacccctatccacaaccgccaagtgatta	Protospacer
******************************

5. spacer 1.9|1538141|30|CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
tatgagttatcaagtttttgtatttagcag	Protospacer
******************************

6. spacer 1.10|1538207|30|CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaagtgctgaaaaagatagaaacttactt	Protospacer
******************************

7. spacer 1.14|1538075|31|CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ctacccctatccacaaccgccaagtgattag	CRISPR spacer
ctacccctatccacaaccgccaagtgattaa	Protospacer
******************************.

8. spacer 1.15|1538141|31|CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
tatgagttatcaagtttttgtatttagcagt	Protospacer
******************************

9. spacer 1.16|1538207|31|CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
caaagtgctgaaaaagatagaaacttactta	Protospacer
******************************.

10. spacer 1.6|1538339|29|CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.931

cattatttataatactatcacttgccaaa	CRISPR spacer
cattatttataatactatcgcttgctaaa	Protospacer
*******************.*****.***

11. spacer 1.12|1538339|30|CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

cattatttataatactatcacttgccaaaa	CRISPR spacer
cattatttataatactatcgcttgctaaaa	Protospacer
*******************.*****.****

12. spacer 1.1|1538009|29|CP012221|CRISPRCasFinder matches to JX560521 (Acinetobacter phage phiAC-1, complete genome) position: , mismatch: 3, identity: 0.897

ttttgttgagtgggttatgagccaaaata-	CRISPR spacer
ttttgtggagtgggttatgag-caaactag	Protospacer
****** ************** **** **

13. spacer 1.18|1538339|31|CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 3, identity: 0.903

cattatttataatactatcacttgccaaaag	CRISPR spacer
cattatttataatactatcgcttgctaaaaa	Protospacer
*******************.*****.****.

14. spacer 1.3|1538141|29|CP012221|CRISPRCasFinder matches to AF440571 (Sulfolobus islandicus filamentous virus, partial genome) position: , mismatch: 5, identity: 0.828

tatgagttatcaagtttttgtatttagca	CRISPR spacer
tataagttaacaagtttttgtatttttcc	Protospacer
***.***** ***************  *

15. spacer 1.3|1538141|29|CP012221|CRISPRCasFinder matches to AP013610 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.793

tatgagttatcaagtttttgtatttagca	CRISPR spacer
cttttgttctaaagtttttgtatttagca	Protospacer
. *  *** * ******************

16. spacer 1.3|1538141|29|CP012221|CRISPRCasFinder matches to KX467643 (Sulfolobus islandicus filamentous virus 2, complete genome) position: , mismatch: 6, identity: 0.793

tatgagttatcaagtttttgtatttagca	CRISPR spacer
tgtaagttaacaagtttttgtatttttct	Protospacer
*.*.***** ***************  *

17. spacer 1.6|1538339|29|CP012221|CRISPRCasFinder matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

cattatttataatactatcact--tgccaaa	CRISPR spacer
gattaattataatactatcactgctatca--	Protospacer
 **** ****************  *..**

18. spacer 1.7|1538009|30|CP012221|CRT matches to JX560521 (Acinetobacter phage phiAC-1, complete genome) position: , mismatch: 6, identity: 0.8

ttttgttgagtgggttatgagccaaaataa	CRISPR spacer
ttttgtggagtgggttatgagcaaactaga	Protospacer
****** *************** **   .*

19. spacer 1.9|1538141|30|CP012221|CRT matches to AF440571 (Sulfolobus islandicus filamentous virus, partial genome) position: , mismatch: 6, identity: 0.8

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
tataagttaacaagtttttgtatttttcca	Protospacer
***.***** ***************  * .

20. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cattatttataatactatcact--tgccaaaa	CRISPR spacer
gattaattataatactatcactgctatcaa--	Protospacer
 **** ****************  *..***

21. spacer 1.15|1538141|31|CP012221|PILER-CR matches to AF440571 (Sulfolobus islandicus filamentous virus, partial genome) position: , mismatch: 6, identity: 0.806

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
tataagttaacaagtttttgtatttttccag	Protospacer
***.***** ***************  * .*

22. spacer 1.9|1538141|30|CP012221|CRT matches to AP013610 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
cttttgttctaaagtttttgtatttagcaa	Protospacer
. *  *** * ******************.

23. spacer 1.9|1538141|30|CP012221|CRT matches to KX467643 (Sulfolobus islandicus filamentous virus 2, complete genome) position: , mismatch: 7, identity: 0.767

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
tgtaagttaacaagtttttgtatttttcta	Protospacer
*.*.***** ***************  * .

24. spacer 1.13|1538009|31|CP012221|PILER-CR matches to JX560521 (Acinetobacter phage phiAC-1, complete genome) position: , mismatch: 7, identity: 0.774

ttttgttgagtgggttatgagccaaaataag	CRISPR spacer
ttttgtggagtgggttatgagcaaactagaa	Protospacer
****** *************** **   .*.

25. spacer 1.3|1538141|29|CP012221|CRISPRCasFinder matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.724

tatgagttatcaagtttttgtatttagca	CRISPR spacer
attgagtttttaagtttttgtatttcatc	Protospacer
  ****** *.************** ..

26. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

27. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
attgacgctgaaaaagataaaaacttaat	Protospacer
   ...*************.******* *

28. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

29. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

30. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

31. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

32. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

33. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
attgacgctgaaaaagataaaaacttaat	Protospacer
   ...*************.******* *

34. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

35. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
attgacgctgaaaaagataaaaacttaat	Protospacer
   ...*************.******* *

36. spacer 1.6|1538339|29|CP012221|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.724

cattatttataatactatcacttgccaaa	CRISPR spacer
cattattaataatactatcaattatattg	Protospacer
******* ************ **..   .

37. spacer 1.6|1538339|29|CP012221|CRISPRCasFinder matches to MF033351 (Acinetobacter phage vB_ApiP_P2, complete genome) position: , mismatch: 8, identity: 0.724

cattatttataatactatcacttgccaaa	CRISPR spacer
gattatttataacactatcactagatgct	Protospacer
 ***********.********* * ..

38. spacer 1.6|1538339|29|CP012221|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.724

cattatttataatactatcacttgccaaa	CRISPR spacer
cattattaataatactatcaattatattg	Protospacer
******* ************ **..   .

39. spacer 1.10|1538207|30|CP012221|CRT matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.733

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
attgacgctgaaaaagataaaaacttaatt	Protospacer
   ...*************.******* **

40. spacer 1.10|1538207|30|CP012221|CRT matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.733

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
attgacgctgaaaaagataaaaacttaatt	Protospacer
   ...*************.******* **

41. spacer 1.10|1538207|30|CP012221|CRT matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.733

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
attgacgctgaaaaagataaaaacttaatt	Protospacer
   ...*************.******* **

42. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.733

cattatttataatactatcacttgccaaaa	CRISPR spacer
cattattaataatactatcaattatattga	Protospacer
******* ************ **..   .*

43. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.733

cattatttataatactatcacttgccaaaa	CRISPR spacer
cattattaataatactatcaattatattga	Protospacer
******* ************ **..   .*

44. spacer 1.15|1538141|31|CP012221|PILER-CR matches to AP013610 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.742

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
cttttgttctaaagtttttgtatttagcaac	Protospacer
. *  *** * ******************.

45. spacer 1.16|1538207|31|CP012221|PILER-CR matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
attgacgctgaaaaagataaaaacttaattg	Protospacer
   ...*************.******* ***

46. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
attgacgctgaaaaagataaaaacttaattg	Protospacer
   ...*************.******* ***

47. spacer 1.16|1538207|31|CP012221|PILER-CR matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
attgacgctgaaaaagataaaaacttaattg	Protospacer
   ...*************.******* ***

48. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

49. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

50. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NZ_CP047427 (Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

51. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NZ_CP053310 (Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

52. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NC_007389 (Spiroplasma citri pSci3 plasmid) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

53. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NC_007392 (Spiroplasma citri plasmid pSci6) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

54. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NZ_CP047431 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

55. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NZ_CP046369 (Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

56. spacer 1.16|1538207|31|CP012221|PILER-CR matches to NZ_CP042474 (Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

57. spacer 1.4|1538207|29|CP012221|CRISPRCasFinder matches to CAJDKB010000002 (Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.69

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
gtgagtgctgaaaaagataaaaacaatgg	Protospacer
  .****************.****

58. spacer 1.9|1538141|30|CP012221|CRT matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.7

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
attgagtttttaagtttttgtatttcatca	Protospacer
  ****** *.************** .. .

59. spacer 1.10|1538207|30|CP012221|CRT matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

60. spacer 1.10|1538207|30|CP012221|CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

61. spacer 1.10|1538207|30|CP012221|CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

62. spacer 1.10|1538207|30|CP012221|CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

63. spacer 1.10|1538207|30|CP012221|CRT matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

64. spacer 1.10|1538207|30|CP012221|CRT matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

65. spacer 1.10|1538207|30|CP012221|CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

66. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP045828 (Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

67. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP047380 (Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

68. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP024617 (Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

69. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP023674 (Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

70. spacer 1.12|1538339|30|CP012221|CRT matches to MF033351 (Acinetobacter phage vB_ApiP_P2, complete genome) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
gattatttataacactatcactagatgctt	Protospacer
 ***********.********* * ..

71. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP038393 (Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

72. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP024055 (Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

73. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_CP027589 (Escherichia coli strain 2014C-3011 plasmid unnamed1) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

74. spacer 1.12|1538339|30|CP012221|CRT matches to NZ_AP014804 (Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

75. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP045828 (Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

76. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP047380 (Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

77. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP024617 (Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

78. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP023674 (Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

79. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP038393 (Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

80. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP024055 (Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

81. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP027589 (Escherichia coli strain 2014C-3011 plasmid unnamed1) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

82. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_AP014804 (Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

83. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
cattattaataatactatcaattatattgat	Protospacer
******* ************ **..   .*

84. spacer 1.18|1538339|31|CP012221|PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
cattattaataatactatcaattatattgat	Protospacer
******* ************ **..   .*

85. spacer 1.10|1538207|30|CP012221|CRT matches to CAJDKB010000002 (Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence) position: , mismatch: 10, identity: 0.667

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
gtgagtgctgaaaaagataaaaacaatgga	Protospacer
  .****************.****

86. spacer 1.15|1538141|31|CP012221|PILER-CR matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.677

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
attgagtttttaagtttttgtatttcatcac	Protospacer
  ****** *.************** .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1048212 : 1128687

101

Campylobacter_phage(29.27%)

tRNA,plate,integrase,tail,protease,bacteriocin,head

attL 1056577:1056594|attR 1067797:1067814

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL45476.1\|1048212_1049574_-\|tRNA	glutamyl-tRNA amidotransferase	NA	NA	NA	NA
AXL45477.1\|1049570_1049681_-	hypothetical protein	NA	NA	NA	NA
AXL45478.1\|1049674_1052428_-\|tRNA	isoleucyl-tRNA synthase	A0A2P1ELB8	Moumouvirus	2.8e-66	24.5
AXL45479.1\|1052526_1053615_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	2.7e-09	34.6
AXL45480.1\|1053626_1053941_+	acetyltransferase	NA	NA	NA	NA
AXL45481.1\|1054567_1055173_+	nitroreductase	NA	NA	NA	NA
AXL45482.1\|1055380_1056184_-	DNA-binding protein	NA	NA	NA	NA
AXL45483.1\|1056282_1056552_+	hypothetical protein	NA	NA	NA	NA
AXL45484.1\|1056567_1056759_+	hypothetical protein	NA	NA	NA	NA
1056577:1056594	attL	NA	NA	NA	NA
AXL45485.1\|1056759_1058874_+\|integrase	integrase	NA	NA	NA	NA
AXL45486.1\|1058962_1059820_+\|bacteriocin	bacteriocin	A0A0M3LP72	Mannheimia_phage	5.6e-26	31.2
AXL45487.1\|1059816_1060008_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AXL45488.1\|1060004_1060190_+	hypothetical protein	NA	NA	NA	NA
AXL45489.1\|1060245_1060677_+	hypothetical protein	NA	NA	NA	NA
AXL45490.1\|1060750_1061089_+	hypothetical protein	NA	NA	NA	NA
AXL45491.1\|1061085_1061298_+	hypothetical protein	NA	NA	NA	NA
AXL45492.1\|1061284_1061770_+	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	3.2e-18	34.0
AXL45493.1\|1061766_1061946_+	hypothetical protein	NA	NA	NA	NA
AXL45494.1\|1062009_1062282_+	hypothetical protein	NA	NA	NA	NA
AXL45495.1\|1062278_1062665_+	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
AXL45496.1\|1062779_1062959_+	hypothetical protein	NA	NA	NA	NA
AXL45497.1\|1062955_1063384_+	hypothetical protein	NA	NA	NA	NA
AXL45498.1\|1063435_1063627_+	transcriptional regulator	NA	NA	NA	NA
AXL45499.1\|1063613_1064093_+	hypothetical protein	A7YGZ0	Campylobacter_phage	2.8e-06	30.2
AXL45500.1\|1064231_1065365_-	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
AXL45501.1\|1065357_1066740_-	hypothetical protein	A0A0M3LRU4	Mannheimia_phage	8.2e-11	22.7
AXL45502.1\|1066736_1068263_-	hypothetical protein	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
1067797:1067814	attR	NA	NA	NA	NA
AXL45503.1\|1068352_1068667_-	hypothetical protein	NA	NA	NA	NA
AXL45504.1\|1068778_1069027_-	hypothetical protein	NA	NA	NA	NA
AXL45505.1\|1069023_1069365_-	hypothetical protein	NA	NA	NA	NA
AXL45506.1\|1069375_1069765_-	peptidase M15 family protein	A0A1X9Q0V8	Human_gokushovirus	4.2e-21	45.9
AXL45507.1\|1069754_1070120_-	hypothetical protein	NA	NA	NA	NA
AXL46230.1\|1070116_1070443_-	hypothetical protein	NA	NA	NA	NA
AXL45508.1\|1070466_1070694_-	hypothetical protein	NA	NA	NA	NA
AXL45509.1\|1070693_1071581_-\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
AXL45510.1\|1071580_1072621_-	hypothetical protein	NA	NA	NA	NA
AXL45511.1\|1072751_1073216_+	resolvase	NA	NA	NA	NA
AXL45512.1\|1073212_1073845_+\|plate	baseplate assembly protein	V5YUM9	Pseudomonas_phage	1.0e-08	33.9
AXL45513.1\|1073853_1074045_+	hypothetical protein	NA	NA	NA	NA
AXL45514.1\|1074041_1074332_+\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
AXL45515.1\|1074328_1075495_+\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
AXL45516.1\|1075592_1076213_+\|tail	phage tail protein	A7YGM6	Campylobacter_phage	2.8e-59	97.4
AXL45517.1\|1076212_1077292_+\|tail	phage tail protein	A7YGV0	Campylobacter_phage	3.9e-149	100.0
AXL45518.1\|1077301_1077808_+	hypothetical protein	A7YGY7	Campylobacter_phage	1.2e-84	97.0
AXL45519.1\|1077804_1078176_+	hypothetical protein	A7YGH7	Campylobacter_phage	5.7e-68	99.2
AXL45520.1\|1078276_1079290_+	hypothetical protein	A7YGF5	Campylobacter_phage	4.7e-189	99.4
AXL45521.1\|1079308_1080499_+\|tail	phage tail protein	A7YGZ6	Campylobacter_phage	2.2e-193	98.0
AXL45522.1\|1080621_1081137_+\|tail	phage tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
AXL45523.1\|1081147_1081384_+	hypothetical protein	NA	NA	NA	NA
AXL45524.1\|1081491_1081722_-	hypothetical protein	NA	NA	NA	NA
AXL45525.1\|1081751_1083716_+\|tail	tail tape measure protein	NA	NA	NA	NA
AXL45526.1\|1083717_1084092_+\|tail	phage tail protein	NA	NA	NA	NA
AXL45527.1\|1084084_1084276_+\|tail	phage tail protein	NA	NA	NA	NA
AXL45528.1\|1084269_1085238_+\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
AXL45529.1\|1085339_1086155_+	DNA adenine methylase	A7YGG5	Campylobacter_phage	4.1e-151	99.6
AXL45530.1\|1086184_1086472_-	hypothetical protein	A7YGI8	Campylobacter_phage	6.6e-48	100.0
AXL45531.1\|1086551_1086746_-	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
AXL45532.1\|1086755_1087076_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
AXL45533.1\|1087156_1087786_-	repressor	A7YG70	Campylobacter_phage	2.2e-56	94.7
AXL45534.1\|1088071_1088608_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AXL45535.1\|1088604_1089711_+\|protease	zinc metalloprotease	NA	NA	NA	NA
AXL45536.1\|1090640_1091018_+	30S ribosomal protein S6	NA	NA	NA	NA
AXL45537.1\|1091026_1091578_+	single-stranded DNA-binding protein	D5LH30	Escherichia_phage	1.3e-15	43.6
AXL45538.1\|1091588_1091849_+	30S ribosomal protein S18	NA	NA	NA	NA
AXL45539.1\|1091907_1094283_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	2.7e-134	37.9
AXL45540.1\|1094299_1094947_-	outer membrane assembly lipoprotein YfiO	NA	NA	NA	NA
AXL45541.1\|1095107_1095497_+	flagellar biosynthesis protein FliW	NA	NA	NA	NA
AXL45542.1\|1095496_1096228_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.2e-18	28.3
AXL45543.1\|1096224_1096527_+	transformation system protein	NA	NA	NA	NA
AXL45544.1\|1096523_1097186_+	hypothetical protein	NA	NA	NA	NA
AXL45545.1\|1097182_1097635_+	hypothetical protein	NA	NA	NA	NA
AXL45546.1\|1097631_1098261_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
AXL45547.1\|1098238_1098871_-	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA
AXL46231.1\|1098860_1099673_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA
AXL45548.1\|1099669_1100356_-	nuclease	NA	NA	NA	NA
AXL45549.1\|1100352_1101114_-	ATP-binding protein	NA	NA	NA	NA
AXL45550.1\|1101115_1104052_-	transcription-repair coupling factor	NA	NA	NA	NA
AXL45551.1\|1104051_1104447_-	hypothetical protein	NA	NA	NA	NA
AXL45552.1\|1104383_1105286_-	peptidase M24	A0A2D0ZM66	Rhodococcus_phage	2.0e-18	46.4
AXL45553.1\|1105272_1106433_-	folylpolyglutamate synthase	NA	NA	NA	NA
AXL45554.1\|1106422_1107820_-	hypothetical protein	NA	NA	NA	NA
AXL45555.1\|1107803_1108316_-	hypothetical protein	NA	NA	NA	NA
AXL45556.1\|1108312_1110742_-\|tRNA	leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	5.3e-154	39.9
AXL45557.1\|1110751_1111723_-	preprotein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.7e-50	45.8
AXL45558.1\|1111722_1113303_-	preprotein translocase subunit SecD	NA	NA	NA	NA
AXL45559.1\|1113295_1113568_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.5e-09	40.0
AXL45560.1\|1113540_1114866_+	acyltransferase	NA	NA	NA	NA
AXL45561.1\|1115102_1116299_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.1e-67	40.8
AXL45562.1\|1116438_1117662_+	serine/threonine protein kinase	NA	NA	NA	NA
AXL45563.1\|1117671_1118559_+	aspartate carbamoyltransferase	Q84489	Paramecium_bursaria_Chlorella_virus	3.6e-28	32.7
AXL45564.1\|1118562_1120284_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	4.9e-13	20.9
AXL45565.1\|1120277_1120715_+	hypothetical protein	NA	NA	NA	NA
AXL45566.1\|1120711_1122787_+	ATP-dependent DNA helicase	A7KV33	Bacillus_phage	1.4e-94	36.0
AXL45567.1\|1122783_1123602_+\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
AXL45568.1\|1123595_1123823_+	carbon storage regulator	NA	NA	NA	NA
AXL45569.1\|1123819_1124587_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA
AXL45570.1\|1124583_1125036_+	single-stranded DNA-binding protein	W5RAM5	Staphylococcus_phage	2.1e-19	40.3
AXL45571.1\|1125046_1125649_+	thioredoxin	NA	NA	NA	NA
AXL45572.1\|1125648_1125939_+\|protease	Clp protease ClpS	A0A218MMY6	uncultured_virus	2.2e-14	50.6
AXL45573.1\|1125935_1128065_+\|protease	Clp protease ClpA	K4FB40	Cronobacter_phage	4.2e-131	45.0
AXL45574.1\|1128039_1128687_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA

DBSCAN-SWA_2

1752778 : 1764494

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL46174.1\|1752778_1754350_+	recombinase RecJ	A0A0R6PDC6	Moraxella_phage	3.4e-53	47.4
AXL46175.1\|1754445_1755441_+	L-asparaginase	NA	NA	NA	NA
AXL46176.1\|1755728_1755986_-	hypothetical protein	NA	NA	NA	NA
AXL46177.1\|1756030_1756753_-	capsular biosynthesis protein	E3SJ89	Synechococcus_phage	8.4e-15	26.3
AXL46178.1\|1756749_1758273_-	capsular biosynthesis protein	B2ZYD9	Ralstonia_phage	5.3e-35	27.5
AXL46179.1\|1758269_1758668_-	capsular biosynthesis protein	A0A2K9L0P7	Tupanvirus	1.7e-09	41.0
AXL46180.1\|1758707_1760627_-	sugar transferase	E3SJ94	Synechococcus_phage	2.9e-06	27.8
AXL46181.1\|1760620_1762480_-	dTDP-glucose pyrophosphorylase	M4QRS6	Synechococcus_phage	3.0e-56	40.2
AXL46182.1\|1762476_1762806_-	hypothetical protein	NA	NA	NA	NA
AXL46183.1\|1762808_1763144_-	ketosteroid isomerase	NA	NA	NA	NA
AXL46184.1\|1763136_1763862_-	glycosyl transferase family 2	A0A1D8KNV9	Synechococcus_phage	1.2e-29	33.6
AXL46185.1\|1763855_1764494_-	HAD family hydrolase	M1I080	Acanthocystis_turfacea_Chlorella_virus	2.2e-35	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage