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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP031468 Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence 0 crisprs NA 0 0 0 0
CP031466 Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence 7 crisprs cas3,DinG,csa3,PD-DExK 0 6 1 0
CP031467 Paraburkholderia caffeinilytica strain CF1 chromosome 2, complete sequence 2 crisprs DinG,DEDDh,csa3,WYL,cas3 0 2 0 0

Results visualization

1. CP031466
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031466_1 318210-318322 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031466_2 739687-739790 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031466_3 922128-922198 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031466_5 1785797-1785906 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031466_8 2964140-2964229 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031466_10 2964722-2964876 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031466_9 2964308-2964610 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP031466_3 3.1|922151|25|CP031466|CRISPRCasFinder 922151-922175 25 NZ_LN832562 Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence 517266-517290 4 0.84
CP031466_6 6.1|2900404|27|CP031466|CRISPRCasFinder 2900404-2900430 27 NC_015685 Oligotropha carboxidovorans OM5 plasmid pOC167, complete sequence 48795-48821 5 0.815
CP031466_6 6.3|2900542|27|CP031466|CRISPRCasFinder 2900542-2900568 27 NC_041916 Vibrio phage pTD1 DNA, complete genome 152186-152212 5 0.815
CP031466_6 6.1|2900404|27|CP031466|CRISPRCasFinder 2900404-2900430 27 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 405285-405311 6 0.778
CP031466_6 6.3|2900542|27|CP031466|CRISPRCasFinder 2900542-2900568 27 NZ_CP021813 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence 1382291-1382317 6 0.778
CP031466_7 7.2|2945952|29|CP031466|PILER-CR 2945952-2945980 29 NZ_CP013632 Rhizobium sp. N324 plasmid pRspN324b, complete sequence 317884-317912 6 0.793
CP031466_6 6.2|2900470|33|CP031466|CRISPRCasFinder 2900470-2900502 33 MT657343 Microbacterium phage GaeCeo, complete genome 19041-19073 7 0.788
CP031466_6 6.2|2900470|33|CP031466|CRISPRCasFinder 2900470-2900502 33 MN310543 Microbacterium phage ChickenKing, complete genome 18868-18900 7 0.788
CP031466_6 6.3|2900542|27|CP031466|CRISPRCasFinder 2900542-2900568 27 NZ_CP009417 Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence 303674-303700 7 0.741
CP031466_7 7.2|2945952|29|CP031466|PILER-CR 2945952-2945980 29 MK373793 Escherichia phage vB_EcoS_MM01, complete genome 42990-43018 7 0.759
CP031466_6 6.2|2900470|33|CP031466|CRISPRCasFinder 2900470-2900502 33 NC_016624 Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence 239837-239869 9 0.727
CP031466_6 6.2|2900470|33|CP031466|CRISPRCasFinder 2900470-2900502 33 NZ_CP032703 Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence 22102-22134 9 0.727
CP031466_7 7.1|2945880|35|CP031466|PILER-CR 2945880-2945914 35 NC_014310 Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence 452297-452331 10 0.714
CP031466_7 7.1|2945880|35|CP031466|PILER-CR 2945880-2945914 35 NZ_CP022760 Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence 436539-436573 10 0.714
CP031466_7 7.1|2945880|35|CP031466|PILER-CR 2945880-2945914 35 NZ_CP022789 Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence 436529-436563 10 0.714

1. spacer 3.1|922151|25|CP031466|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 4, identity: 0.84

gccgcagagcatcttcaatgacata	CRISPR spacer
gccgcagagcatcgtcaacgacagc	Protospacer
************* ****.****  

2. spacer 6.1|2900404|27|CP031466|CRISPRCasFinder matches to NC_015685 (Oligotropha carboxidovorans OM5 plasmid pOC167, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaacgacaccttgagcaattacggc	CRISPR spacer
agcaacgacaccttgcgctattacgaa	Protospacer
.************** ** ******. 

3. spacer 6.3|2900542|27|CP031466|CRISPRCasFinder matches to NC_041916 (Vibrio phage pTD1 DNA, complete genome) position: , mismatch: 5, identity: 0.815

ggtggttcattcaacctcttgaacctg	CRISPR spacer
cctcgttcattcaacatcttgaacttg	Protospacer
  * *********** ********.**

4. spacer 6.1|2900404|27|CP031466|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 6, identity: 0.778

ggcaacgacaccttgagcaattacggc	CRISPR spacer
attacggacaccttgaggaattacggc	Protospacer
. .*  *********** *********

5. spacer 6.3|2900542|27|CP031466|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

ggtggttcattcaacctcttgaacctg	CRISPR spacer
tttggctcactcaacctcttgaaccaa	Protospacer
  ***.***.*************** .

6. spacer 7.2|2945952|29|CP031466|PILER-CR matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 6, identity: 0.793

acgttc-aagatgccagaattgccgctgtt	CRISPR spacer
-cgcgcgaaggtgccagaattgccgctgcg	Protospacer
 **. * ***.*****************. 

7. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to MT657343 (Microbacterium phage GaeCeo, complete genome) position: , mismatch: 7, identity: 0.788

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
gccagcggcggcacctacaccgtctccaagggc	Protospacer
******.************ *****..**   *

8. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to MN310543 (Microbacterium phage ChickenKing, complete genome) position: , mismatch: 7, identity: 0.788

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
gccagcggcggcacctacaccgtctccaagggc	Protospacer
******.************ *****..**   *

9. spacer 6.3|2900542|27|CP031466|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.741

ggtggttcattcaacctcttgaacctg	CRISPR spacer
aagtattcatacaacctcttgaaccta	Protospacer
..  .***** ***************.

10. spacer 7.2|2945952|29|CP031466|PILER-CR matches to MK373793 (Escherichia phage vB_EcoS_MM01, complete genome) position: , mismatch: 7, identity: 0.759

acgttcaagatgccagaattgccgctgtt	CRISPR spacer
caattccagatgccagaattgctgctgcg	Protospacer
  .*** ***************.****. 

11. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 9, identity: 0.727

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
cccagcagcggcagcttcagcgtcttgccggtg	Protospacer
 ************ ** *********     * 

12. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
gccagcagcgtcacctgcagcgtcagccacgcg	Protospacer
********** *****.*******  . ** . 

13. spacer 7.1|2945880|35|CP031466|PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.714

aggttaccgatggccatgtacgtcatggcgctgtt	CRISPR spacer
gcttcggtgatggcgatgtgcgtcatggcgctgtc	Protospacer
.  *.. .****** ****.**************.

14. spacer 7.1|2945880|35|CP031466|PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

aggttaccgatggccatgtacgtcatggcgctgtt	CRISPR spacer
gcttcggtgatggcgatgtgcgtcatggcgctgtc	Protospacer
.  *.. .****** ****.**************.

15. spacer 7.1|2945880|35|CP031466|PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

aggttaccgatggccatgtacgtcatggcgctgtt	CRISPR spacer
gcttcggtgatggcgatgtgcgtcatggcgctgtc	Protospacer
.  *.. .****** ****.**************.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 938076 : 949980 12 uncultured_Caudovirales_phage(54.55%) portal,tail,plate,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP031467
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031467_1 3470174-3470286 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031467_2 4019492-4019568 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP031467_2 2.1|4019518|25|CP031467|CRISPRCasFinder 4019518-4019542 25 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 1258810-1258834 3 0.88
CP031467_2 2.1|4019518|25|CP031467|CRISPRCasFinder 4019518-4019542 25 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 1263479-1263503 3 0.88
CP031467_1 1.1|3470213|35|CP031467|CRISPRCasFinder 3470213-3470247 35 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 865548-865582 8 0.771
CP031467_1 1.1|3470213|35|CP031467|CRISPRCasFinder 3470213-3470247 35 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 870228-870262 8 0.771

1. spacer 2.1|4019518|25|CP031467|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 3, identity: 0.88

cgctgtgcatgggaccggagtaatc	CRISPR spacer
agctgtgcataggaccggagtaagc	Protospacer
 *********.************ *

2. spacer 2.1|4019518|25|CP031467|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 3, identity: 0.88

cgctgtgcatgggaccggagtaatc	CRISPR spacer
agctgtgcataggaccggagtaagc	Protospacer
 *********.************ *

3. spacer 1.1|3470213|35|CP031467|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.771

ggtcgaccgctagtgcatgggaccagagtaagggc	CRISPR spacer
acccggcaactattgcatgggaccagagtaagcgc	Protospacer
. .**.* .*** ******************* **

4. spacer 1.1|3470213|35|CP031467|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.771

ggtcgaccgctagtgcatgggaccagagtaagggc	CRISPR spacer
acccggcaactattgcatgggaccagagtaagcgc	Protospacer
. .**.* .*** ******************* **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage