CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	7 crisprs	cas3,DinG,csa3,PD-DExK	6	1
CP031467	Paraburkholderia caffeinilytica strain CF1 chromosome 2, complete sequence	2 crisprs	DinG,DEDDh,csa3,WYL,cas3	2	0
CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031466_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031466_1

318210-318322

Orphan

Consensus_repeat	Method
GTTTCGATTATTCGGCTCTCAAAACGATTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031466_1

>merge|CP031466|1|318210-318322|CRISPRCasFinder
GTTTCGATTATTCGGCTCTCAAAACGATTACAAAACGCCTGTTTTTCAAAAAAACGATTATACGGCGTCTGCGCATCGTTTCGATTACTCGGCTCTCAAAACGATTACAAAAC

>CP031466|1|1|318210-318322|CRISPRCasFinder
GTTTCGATTATTCGGCTCTCAAAACGATTACAAAAC	GCCTGTTTTTCAAAAAAACGATTATACGGCGTCTGCGCATC
GTTTCGATTACTCGGCTCTCAAAACGATTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031466.1\|AXL48787.1\|329526_330873_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP031466.1\|AXL48772.1\|305944_306874_-\|secretion-protein-HlyD	unknown	unknown	gnl\|CDD\|235136
CP031466.1\|AXL48780.1\|318367_319207_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP031466.1\|AXL48781.1\|320372_321332_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840
CP031466.1\|AXL48776.1\|311403_312177_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|180823
CP031466.1\|AXL48775.1\|309787_311020_-\|bicyclomycin-resistance-protein	unknown	unknown	gnl\|CDD\|270303
CP031466.1\|AXL48785.1\|325049_325748_+\|4'-phosphopantetheinyl-transferase	unknown	unknown	gnl\|CDD\|225002
CP031466.1\|AXL48771.1\|305003_305948_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224054
CP031466.1\|AXL48783.1\|323213_323450_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371304
CP031466.1\|AXL48786.1\|327094_327979_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
CP031466.1\|AXL48784.1\|323637_324966_+\|major-facilitator-transporter	unknown	unknown	gnl\|CDD\|273326
CP031466.1\|AXL48782.1\|321390_323100_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236158
CP031466.1\|AXL48777.1\|312283_313366_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|236947
CP031466.1\|AXL48774.1\|307884_308718_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223472
CP031466.1\|AXL48770.1\|302400_303852_-\|RND-efflux-system-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|273830
CP031466.1\|AXL48778.1\|314596_314821_+\|DNA-mismatch-repair-protein-MutT	unknown	unknown	gnl\|CDD\|240041
CP031466.1\|AXL48779.1\|316617_318156_-\|fic/DOC-family-protein	unknown	unknown	gnl\|CDD\|225718
CP031466.1\|AXL48773.1\|306900_307602_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP031466.1\|AXL48789.1\|331913_332393_-\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL48788.1\|331046_331901_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP031466.1\|AXL48787.1\|329526_330873_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.5621e-77
CP031466.1\|AXL48772.1\|305944_306874_-\|secretion-protein-HlyD	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	3.07647e-26
CP031466.1\|AXL48780.1\|318367_319207_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.43397e-38
CP031466.1\|AXL48781.1\|320372_321332_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.16963e-78
CP031466.1\|AXL48776.1\|311403_312177_+\|short-chain-dehydrogenase	gnl\|CDD\|180823	PRK07074, PRK07074, SDR family oxidoreductase.	6.94631e-145
CP031466.1\|AXL48775.1\|309787_311020_-\|bicyclomycin-resistance-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.20983e-83
CP031466.1\|AXL48785.1\|325049_325748_+\|4'-phosphopantetheinyl-transferase	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	1.59769e-26
CP031466.1\|AXL48771.1\|305003_305948_-\|ABC-transporter	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.92183e-95
CP031466.1\|AXL48783.1\|323213_323450_+\|hypothetical-protein	gnl\|CDD\|371304	pfam10932, DUF2783, Protein of unknown function (DUF2783). This is a bacterial family of uncharacterized protein.	1.28365e-26
CP031466.1\|AXL48786.1\|327094_327979_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.81997e-53
CP031466.1\|AXL48784.1\|323637_324966_+\|major-facilitator-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.39798e-94
CP031466.1\|AXL48782.1\|321390_323100_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|236158	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.	0
CP031466.1\|AXL48777.1\|312283_313366_+\|ABC-transporter	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
CP031466.1\|AXL48774.1\|307884_308718_-\|membrane-protein	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.01586e-77
CP031466.1\|AXL48770.1\|302400_303852_-\|RND-efflux-system-outer-membrane-lipoprotein	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	5.67938e-94
CP031466.1\|AXL48778.1\|314596_314821_+\|DNA-mismatch-repair-protein-MutT	gnl\|CDD\|240041	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.02303e-14
CP031466.1\|AXL48779.1\|316617_318156_-\|fic/DOC-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.23566e-10
CP031466.1\|AXL48773.1\|306900_307602_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.2034e-11

>CP031466.1|AXL48779.1|316617_318156_-|fic/DOC-family-protein
MPQIGYQWLSNTYGVVPVHPFAVQSEIGRIRSTSTDGDIRREVYPEPYRPAASLTDNLTFAFRHEGIHLEFLARLYALQPVRHELEAWIAREPTGAYARRACFFYEWLMPEPLNAPGVSRGNYVDALNPEEFIVGTPANNARWRVRDNLPGNRDFCPVIRRVDAVQRAEAYDLTAPLAALEADYGIDLIMRSAVWLTVKESRASFLIEHEQDKEDRIRRFAAVMESECGQHANPFDAETLDVLQRGILGQSALRYGIRRSPVYVGHVARYQPVVDYIAPHWEHIETMLAGLSRFLERTEGGASIVRAAAASFGFVYVHPMADGNGRISRFLINDILRRDGAVPTPIILPVSATITHSTRDRAAYDKVLERFSRPLMKHYADQYTFGKTEIAEDGVEYNLHFRAYDDALPAWRYPDLTAHVIYLADVIDMTLTHEMRTEARFLHANDSARRAIKEFLEAPDNDLDNIIRSVRQNGNSVSNNLRKRYPLFDDRPALGAQIVQAITEAFSDENDR
>CP031466.1|AXL48778.1|314596_314821_+|DNA-mismatch-repair-protein-MutT
MQLPDGEYVWAEERFFLVSVSSNVLSRAQWTALEREVMADSRWWSLAELASTSETIYPEDLSAILNASGLSGSN
>CP031466.1|AXL48777.1|312283_313366_+|ABC-transporter
MAAVQLSGIFKRYGDTQVVHGIDLHIDDGEFVVLVGPSGCGKSTLMRMVAGLEEISGGDLMIGGTRANTLAPQQRNISMVFQSYALYPHLSVYENIAFGPRIRKESSASFKPRIEAAAKMLNLGGYLDRLPRALSGGQRQRVAMGRAVVREPSLFLFDEPLSNLDAKLRVQMRTEIKALHQRLKNTVIYVTHDQIEAMTMADRIVVMNAGRIEQVGRPLDLYDHPANLFVASFLGSPSMNFAEGVLVNRTEGQGFALKLTDGAEIVLEGTPASAVVGAKVTLGVRPEHIETMADKPDAAMEVEVVEPTGAETHLYGKIGGNTWCVTTRQRSKVEPGQRVTLRLPAEHIHLFDTESGRRLV
>CP031466.1|AXL48776.1|311403_312177_+|short-chain-dehydrogenase
MNRVVLVTGACGGIGRVLCKRFVEEGDTVLALDIDAVALRGLVAQLGDAHVTPIAVDLGDAAAVQQAVADAVKTRGPVDVLVANAGAAKGLTLATTDAVSWQRDIHLNLNGTYHTVEAVRASMIERQKGVLVLIGSVNGMAALGHPAYSAAKAGLISYTKALAIELGRYGIRANIVCPGTVKTQAWQARVDKNPQVFEDLKKWYPLRDFATPDDIADAVLFLSSPMARVITGVALPVDGGLMAGNRLMAEELTLESL
>CP031466.1|AXL48775.1|309787_311020_-|bicyclomycin-resistance-protein
MSLHARASLALGKVAVALAFAGIAVAAHADTVRVTVAHYSDATAPYFEKMARNFEKANPGTTIKIEDVNWDTLQQKLQTDISGGANADLAIVGTRWLLDFVKDDVAEPLDGYMDASFKGRFIGPFLAPGEINGKVYGLPIAASARALYYNKDLLAKVGYPDGPKTWNDVIEASKKLKAQGVAGFGLQGKEIETDVYYYYALWTNGGDVVGKDGKAAFNSAAGVKAATLYKTLIDDGLTQPGVTGYSREDVQNLFKQGRVAMMISAPFLAKQIKKEAPNLKYGIDPIPMGTTHATYAVTDSIVMFKNSKVKKSAWKFLDYLFTKEPRVEFTTTEGFLPTTKAEATDPAFNDPDTKSFVALLPTAHFAPTVTGWEDTAKAVTDSMQSIYLGKAKPADALNTAAAQANKSLGK
>CP031466.1|AXL48774.1|307884_308718_-|membrane-protein
MKRSLWCWLALSPLIVAVLFPFAVMLFTALKPATEIFVYPARWLPVHWQWSNFSDMWVAANFGVALRNSCVISFLSTALALAVSLPAAYALARFPFRGKGLYSQFLLVTQMLSPILLVVGLFRLAAMIPYGDGNLVDSKIGVIVSYAAFNIAFAVWMLSSYFQTVPRDLEESAWLEGCGRTRAVFKVFLPLAVPAIVVTAIFTFINAWNEFAVVYTLIRSPENKTLTVQVTDMVAGKYVVEWHLVMAATLCATLPVSIVFAWLQRFLVKGLALGAVK
>CP031466.1|AXL48773.1|306900_307602_-|TetR-family-transcriptional-regulator
MNAKRSPAKPLGRRPAVEDFNVREHLLDTATRLFAERGIAATTVAQIAANADVASALVHYYFTNRERLLDAVVDERLAPAAEFVWRPAAEDPSSDPFALVHEFVARLFDVTERMPWLPPLWLREIVNEGGLLRERMLQRIPFHNIKRFGAHVAQAQQDGTVNSELEALMLFNSILALVMLPLATAKIWQSARGLPVIERDALRRHVSALLIGGMQPLSRAAPSKRRVASRSKS
>CP031466.1|AXL48772.1|305944_306874_-|secretion-protein-HlyD
MLFVALTLAACSHHDDNTYQGYVEGEFVYLGSSQSGTLTQLSVGRGQTVAASEPVFALESVDEAAALQQAQQQLVAARAQFADIRTGKRRPEVNVTRAQLAQAVANARKAALKLTRDEAQYRVGGIAKAQLDDSRADADATAAQVRELTSQVEVALLPGRTQQLSAQSAQVAAAQAAVAQAQWKLDQKRVSAPAEGLVYDTLYRVGEWVQAGNPVVQMLPPQNVKVRFFVPETVVGKLALGRALTIHCDGCAADVAAKITYLSSEAEYTPPVIYSNENRAKLVFMVEAHPSAADAVKLHPGQPIAVTLK
>CP031466.1|AXL48771.1|305003_305948_-|ABC-transporter
MNPPAPQHAIDVQKLNKRFGDKHVVIDVSLQVARGEIFGFLGPNGSGKTTSIRLMCGLLTPDSGTGTCLGYDIVRESAQIKRNVGYMTQRFSYWDDLTIRENLDFVARIYQMPGRREAVDRSLESLGLQSRANQLTGALSGGWKQRLALAACMLHEPQLLLLDEPTAGVDPAARRDFWEELHRLAARGISVLVSTHYMDEAERCHKLAYIAYGKLLAQGTAKQIIESQHLATWTIYGEHLSKLAEQLRKTPGVDQTVVFGSALHVSGLDHAALEAAVKQATEGTALRTERIETGLEDVFISLMARSTDNYGAPS
>CP031466.1|AXL48770.1|302400_303852_-|RND-efflux-system-outer-membrane-lipoprotein
MKPLAFVSVVALFGCTVGPDFQVPAAPDTKTYTREAQPAATVAANGAAGASQTFNAAQRATPMWWTQFQSDALDRLVEQALQQSPTLAQARAKLTEARENYNAQFGASEFPSVDANVSGVRQQIDIAQFGIPNAQNPGPFTLYNASVSVWYALDIFGGNRRALEALMAQVDYQAFEFEAVRLSLAGNVVLTVVRRASLQQQIALTQNLADTQAQQLSIMEGRFAAGGVSQLDVRTQRTLLAQTRASLSPLATQLAQADHQLAILLGIAPSKADFGDITLDSLHLPDTLPLTLPSTLARERPDIRASEALLHQASANIGVATANLYPQFALSAGIGSERTSIKDVVSGLNIWNFGLNLTQPIFHGGELRAKKRSAQAAYDAALADYQQTVLQALQQVADALTALQNDAHELQARDDAAQQAQASLDIAHAQYSAGGVSQFGLLDTQRQVLQIALDRTRAQADRFADTAALFQALGGAWQVPAAQ
>CP031466.1|AXL48780.1|318367_319207_-|IclR-family-transcriptional-regulator
MASGASADAKPQRGIQSLDSTGELLGALVAAARPLSLRDLAAAAGMPPAKAFPHLVSLLKIGLLNRDTAGCFEAGPLALELGLIGLQRLSPTREAEPEVVELAASTGMSVAMAVLGPLGPTVVRLEESARPLHVSLRVGTVMSLVNTAIGRVFAAYVADDVRHGLLAQDHLRLAGAEAAEIFAGTAQSPQQLTKAYTQRLTQIRADGIDTALSRPVPGINTLAAPVLDHTGSICLVLAVMGPSGSFDSDLVGGPAQTLRAATLRLSRRFGWMATAPRAE
>CP031466.1|AXL48781.1|320372_321332_+|MBL-fold-metallo-hydrolase
MAKAFASQADLEVKKVTWTQLSENAYAYTAEGDPNSGVIIGDDGVLIVDTTATPAMAQDLIAKIRSVTDKPIKYVVLSHYHAVRVLGASAYFEEGAQQVIASRGTYEMIVERGEADMKSEIERFPRLFAGVETVPGLTWPTLVFEKEMTLFLGKLEVRIAHLGAGHTKGDTVVWLPSQKVLFSGDLVEYDAACYCGDAQLEQWPATLEALRALKAEKLVPGRGPALTTPEDVNKGLDYTKDFVTTLLQQGREAVAQKLDLKAAMAHTRKAMDPKFGHVFIYEHCLPFDVSRAFDEASGITHPRIWTAQRDKEMWDALQA
>CP031466.1|AXL48782.1|321390_323100_+|FAD-dependent-oxidoreductase
MSINYQTLSFDYRPCREQSGQSDAEQTTYPVIVVGAGPVGLATAIDIAQQGVPVVLVDDDCSLSTGSRAICFSKRSLDIFDRLGCGQRMVDKGISWNVGKVFLKDELVYTFNLQPEAGHNRPAFINLQQYYVEGFLLERAQELPNLEIRWKSKVVGVQQSGAPGTAQAGVTLTVDTPNGQYPLHGRYVVAADGSRSPMRNLMGLDSHGVTFKDRFLIADVKMEAEFPTERWFWFDPPFHPNQSVLLHRQPDNVWRIDFQLGWDADPVLEKTPERVIPRVRALLGPDAKFELEWVSVYTFSCLRMDRFRHGNVLFAGDSAHGVSPFGARGANSGVQDAENLAWKLAMVLEGNASDSLLDTYASEREFAADENIRNSTRSTDFITPKSPVSRVFRDAVLKLARHHPFARQLTNSGRLSVPAVLRDSPLNTADSDSFEGLMVPGASCVDAPVHAEGQPAWLLQQLGQQFTGVLFCGSQGIDQATQAALDALRRGPVPLRLVVVTSSDAPVAAASGAKVVYDVDGLAAARYDAKPGTFYLVRPDQHVCARRRQLDVGFVEGALKRALCVEGTA
>CP031466.1|AXL48783.1|323213_323450_+|hypothetical-protein
MALNTQPNLARPDDFYEALIDMHRDLDDAQSQSANAQLILLLANHIGDHATLLEAMRHAREGVTDVSAQGAHTHSLAA
>CP031466.1|AXL48784.1|323637_324966_+|major-facilitator-transporter
MSQSLAPALEPGASAAAHDDLLYRKVSMRIIPFLFLCYVVSFLDRINIGFAQLQMKHDLGFSDAMYGLGAAVFYIGYVLCELPSNMLLARFGARRTFTRIMLLWGIASVGMMLVSKPTHFYLLRFMLGVFEAGFFPGIVLYLTYWYPARRRAAVLSIFFAGVAVAGVLGGLVSGWIMRDMGGVMGLFGWQWMFAIEGAPAIVLGLLAAFYLVDGPQHATWLSTAEKARLIAQRDEDRRVAPDAHSSRAVIQALRNPRVYLFAFIYFSLTCASLTLNFWMPLMIRDFGVHDVLAVSLYTVIPNAVGAVGLILIARHSDRRGERRRHFAVCTIGGGIALSLLTLHLSSFPAMLAILSLAAVLIFAALPIFWTVPSGYLSGTAAAAGIALISSIGITSGIVSPWVIGLIKTHTGTMDNALYLLTALLFVSGVALLMGVPKETQRI
>CP031466.1|AXL48785.1|325049_325748_+|4'-phosphopantetheinyl-transferase
MYSIEPLALPHDGPPDIALWRIDFAFNASLDNAAFAPLSDEERVRAQSFRRHEDTLRFATVRVALREQLARRLGIAAHAVRLTLDANHRPRLADSDAYDFNVSHAGAHGLIAMSPCRRVGVDIEQYADRFDWRSITSLTLDAGEAAWIARLDVAQQVSAFYDAWVAKEALVKTTGVGIARGLQHLIVLPRGGMQVALHDRIPDDMREIAARWIAAPESYSACVAWSTKMFAR
>CP031466.1|AXL48786.1|327094_327979_+|dihydrodipicolinate-synthase-family-protein
MAFEGQGVLAAVTTPLDAANRVDVALLAQHSADLLRRGLHGITLFGTTGEGPSFTVDERSATLEGLLARGIESSELVVGTGAAALGDAISLTRHALAQGCRRVLLLPPFFFKGVSSAGVAEAIGQVIDAVGDSRLRVILYHIPQVSGVGFDDEAIATLRQRYGSVIDGIKDSSGNLDHSLALIRNHPGLNVYVGAEDTIGRARAAGGAGSICGLANIAPEQVRASYDSARDPDSGVITALLRAVDGQSFVPLLKAWVAACQGNDGWRRVRAPLVGIDAHATAALPRALLSGAAA
>CP031466.1|AXL48787.1|329526_330873_+|MFS-transporter
METNLHPVNGDEEALLERAIRRAKWRLVPFLILMYMLAYLDRANIGFAQQAYQASTGVSNAAFAFGAGIFFIAYALFEVPSNLMMHRVGARVWLSRIMVTWGLISATMAYARSDSLFSFIRFFLGAAEAGLFPGAVLYMTYWFPARARGQIMGLFYFGSPLALMLGGPLSGLLLELDGLFGLHGWQLMFLVEGLLASAVGVWAYFYLCNRPEDAKWMPREEAQALARALAAEDRLKQQTGKMSFRAALADPKLLHFAVLYFSIQIAGYGVAFYLPTQVSALLHVKVGLHVGLTSAIPWACAIVAGAFYPGFAVRTGHRRGFAVLSALSIACGLAVSANMGPVGAIVALCFVTMGIMTVQPIFWTFPAAYLGGTAAAGGFAVINAVGNLGGFFAPTARNAAEASFHSVAAGLYVLAASGLVAAFLIAMLRPAQADRRVADPTEPLRAEI
>CP031466.1|AXL48788.1|331046_331901_-|hypothetical-protein
MPLELVYLAPSRAHGNSPGVDSQAANSANALQADQPVRPVQAARPVHAIARAVTPEFISRPLTRRYPHSVAAPRAGELHVWRFRCEWLPVPVQEGETWLSKGERERARLHPNSALRKRFISARVVVRWIVANLFDGEPHAVDLQDDGNEKLRARHPHDGRGITIDIAYGGIWIVIGIAPTTLGLSVVVPSPGASLDETQEGSRQRARYSSLCNALRYAPVDIDLALLSSDTAACAFDLAEHGCWHVLDLPMSGKIRAAVALAQPVTQVHAFGWPKACVFGESNA
>CP031466.1|AXL48789.1|331913_332393_-|hypothetical-protein
MNFRSHHNSRPELVDDHVADTADAPDRTVLSAVRTWLRPACETARGGVHWRDILSGVGLRQDGIEHFDLLMRSLRHVSYRPLDMRCRCASDLGKDEAVILQTIALLQKTHSGAALRMLSEWLPGPAVSGVLKLIRWFAIDLLDAGVELDVQARRVTYMH

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Crispr_ID: CP031466_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031466_2

739687-739790

Orphan

Consensus_repeat	Method
GATGAGTCAGGCGGCATGAGCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031466_2

>merge|CP031466|2|739687-739790|CRISPRCasFinder
GATGAGTCAGGCGGCATGAGCCGGGTGGATAAGCCAGGTGGATAAGCCGGGCTGATGAGTCGGGCTGATGAGTCGGGCTGATGAGTCGGGCGGCATGAGCCGGG

>CP031466|2|2|739687-739790|CRISPRCasFinder
GATGAGTCAGGCGGCATGAGCCGGG	TGGATAAGCCAGGTGGATAAGCCGGGCTGATGAGTCGGGCTGATGAGTCGGGCT
GATGAGTCGGGCGGCATGAGCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031466.1\|AXL49043.1\|736453_736771_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379321
CP031466.1\|AXL49045.1\|738423_738768_+\|cupin	unknown	unknown	gnl\|CDD\|223734
CP031466.1\|AXL49042.1\|734779_736189_+\|phosphogluconate-dehydrogenase-(NADP(+)-dependent,-decarboxylating)	unknown	unknown	gnl\|CDD\|236453
CP031466.1\|AXL49040.1\|730428_731286_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|213022
CP031466.1\|AXL49039.1\|728954_730367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|313268
CP031466.1\|AXL49051.1\|747526_747916_-\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49041.1\|732764_733634_+\|NAD-dependent-deacetylase	unknown	unknown	gnl\|CDD\|235415
CP031466.1\|AXL49044.1\|737854_738175_-\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49046.1\|739976_740984_+\|threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
CP031466.1\|AXL49049.1\|745667_746771_-\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49050.1\|747035_747380_-\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49037.1\|725525_726515_-\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
CP031466.1\|AXL49054.1\|760437_761277_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319986
CP031466.1\|AXL49053.1\|759899_760397_+\|membrane-protein	unknown	unknown	unknown
CP031466.1\|AXL49048.1\|743095_745579_+\|maltodextrin-phosphorylase	unknown	unknown	gnl\|CDD\|340853
CP031466.1\|AXL49036.1\|723341_724823_+\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271357
CP031466.1\|AXL49055.1\|761303_762140_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319986
CP031466.1\|AXL49038.1\|727866_728880_+\|outer-membrane-insertion-C-terminal-signal-domain-protein	unknown	unknown	unknown
CP031466.1\|AXL49047.1\|741031_742477_-\|multidrug-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP031466.1\|AXL49052.1\|748348_749914_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225043

Protein	Function_ID	Function_description	E-value
CP031466.1\|AXL49043.1\|736453_736771_+\|hypothetical-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	2.15034e-11
CP031466.1\|AXL49045.1\|738423_738768_+\|cupin	gnl\|CDD\|223734	COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism].	3.94778e-05
CP031466.1\|AXL49042.1\|734779_736189_+\|phosphogluconate-dehydrogenase-(NADP(+)-dependent,-decarboxylating)	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
CP031466.1\|AXL49040.1\|730428_731286_-\|polysaccharide-deacetylase	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	2.84034e-51
CP031466.1\|AXL49039.1\|728954_730367_+\|hypothetical-protein	gnl\|CDD\|313268	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.	0
CP031466.1\|AXL49048.1\|743095_745579_+\|maltodextrin-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
CP031466.1\|AXL49046.1\|739976_740984_+\|threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	2.93808e-159
CP031466.1\|AXL49041.1\|732764_733634_+\|NAD-dependent-deacetylase	gnl\|CDD\|235415	PRK05333, PRK05333, NAD-dependent protein deacetylase.	1.66354e-176
CP031466.1\|AXL49037.1\|725525_726515_-\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	5.68511e-136
CP031466.1\|AXL49054.1\|760437_761277_+\|hypothetical-protein	gnl\|CDD\|319986	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB. This family contains uncharacterized proteins similar to the periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB, all of which have similar unclosed beta-barrel structures that resemble a baseball glove-like scaffold consisting of an 11-stranded antiparallel sheet. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts outer membrane (OM)-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. It is proposed that the LolA/LolB complex forms a tunnel-like structure, where the hydrophobic insides of LolA and LolB are connected, which enables lipoproteins to transfer from LolA to LolB. RseB exerts a crucial role in modulating the stability of RseA, the transmembrane anti-sigma-factor that is degraded during sigma-E-dependent transcription caused by bacterial envelope stress. Its structural similarity to LolA and LolB suggests that RseA may act as a sensor of periplasmic stress with a dual functionality, detecting mislocalized lipoproteins as well as propagating the signal to induce the sigma-E-response.	4.38561e-13
CP031466.1\|AXL49036.1\|723341_724823_+\|sodium:solute-symporter	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	1.41242e-49
CP031466.1\|AXL49055.1\|761303_762140_+\|hypothetical-protein	gnl\|CDD\|319986	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB. This family contains uncharacterized proteins similar to the periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB, all of which have similar unclosed beta-barrel structures that resemble a baseball glove-like scaffold consisting of an 11-stranded antiparallel sheet. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts outer membrane (OM)-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. It is proposed that the LolA/LolB complex forms a tunnel-like structure, where the hydrophobic insides of LolA and LolB are connected, which enables lipoproteins to transfer from LolA to LolB. RseB exerts a crucial role in modulating the stability of RseA, the transmembrane anti-sigma-factor that is degraded during sigma-E-dependent transcription caused by bacterial envelope stress. Its structural similarity to LolA and LolB suggests that RseA may act as a sensor of periplasmic stress with a dual functionality, detecting mislocalized lipoproteins as well as propagating the signal to induce the sigma-E-response.	3.81819e-07
CP031466.1\|AXL49047.1\|741031_742477_-\|multidrug-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.9864e-54
CP031466.1\|AXL49052.1\|748348_749914_+\|hypothetical-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	4.95529e-25

>CP031466.1|AXL49045.1|738423_738768_+|cupin
MKIIRSRSFTATRPWGALDIANMGGITTRLHWTDQPYKWHVNDGEEVFAVLDGRVEMRYREGGVEQSAILETGDVFYASVGTEHVAHPIGVARIHVAHPIGVARILVVEADGSV
>CP031466.1|AXL49044.1|737854_738175_-|hypothetical-protein
MNKATFLAVQLNVDDVAASPGLVELLNTHLVFAADVAEAADALVQLASIAGLSSGVEASVEIPALAIERLREALDNLSGYDESWLLALEPSRALFDEIGRRHRTLH
>CP031466.1|AXL49043.1|736453_736771_+|hypothetical-protein
MKTLISAVVVAAALVAPVASFAQSNQPLTRAEVRAQLVQLEKAGYNPIGDHVDYPANLQAAQARVDAQNGTAQAVNSGYGAPIAGTSQSGRPVIGNDRNSVYFGN
>CP031466.1|AXL49042.1|734779_736189_+|phosphogluconate-dehydrogenase-(NADP(+)-dependent,-decarboxylating)
MGKQAIGVVGLAVMGRNLALNIESRGHAVSVYNRSREKTDELIAEYPDKKLVPAFTLEEFVESLEKPRRILLMVKAGEGTDATINQLKPLLEKGDILIDGGNTHFTDTIRRNQDLAKSGLHFIGTGVSGGEEGALKGPSIMPGGQRDAYDLVAPILTEIAAKAPDGEPCVAYMGPDGAGHFVKMVHNGIEYGDMQLIAESYAVLKQVVGLSNDELAKVYTEWNEGELDSYLIEITSKIFGKKDEETGKDLVDVILDRAAQKGTGKWTSQNALDLGAPLPLITEAVFARVLSSLKTQRVAASKVLEGPAARPLGAERDAFIESVRRALYFSKVISYAQGFAQLRAASEEYKWDLDYGTIAKIFRAGCIIRARFLQKITDAYTKDKAIANLLLDPYFRDIAKNYQSALREVVIAAINAGVPVPAFASAVAYFDAYRSERLPANLVQAQRDFFGAHTFERIDKPGSFHANWS
>CP031466.1|AXL49041.1|732764_733634_+|NAD-dependent-deacetylase
MTDLQSAPIEPFNEAHTLDDLHAFVQRFPRLFVLTGAGISTDSGIPGYRDDNGEWKRSPPITLQEFLGTAAMRRRYWARSMVGWPVVADAQPNAAHTALARLETAGHVPTLVTQNVDGLHQRAGSREVIELHGGIDGVTCLDCGMQHSRASIQQTLEADNPALLNVTAETAADGDAHLEWHDLDAFRIPSCTNCGGLLKPAVVFFGESVPRERVEAASHALDAADAVLVVGSSLMVYSGYRFCVWAQKQNKPIVAINLGRTRADPLLSLKIAASCADTLTALASRLALD
>CP031466.1|AXL49040.1|730428_731286_-|polysaccharide-deacetylase
MNELFTPPQGDEATPRRRWPRTGYPAMLTATAAWHVFVVVGWLLAPAAWPWWLAAIFANHAIFTVAGLLPRTSLLGPNWTRLPVDARNADAIALTIDDGPDPVVTPQVLDLLDAFNVRATFFCIGAKAQRYPELARDIVARGHALENHSQVHVHTFSITFPGALTREIDTAQRTLEALSGERPMFFRAPAGLRNIFLEPVLGKLDLRLAAWTRRGYDTRERDPQVVAHRLLTGLAPRDILLLHDGNAALTIEGKPLILAVLPRVIDAARRQRLRFVTLREARVDG
>CP031466.1|AXL49039.1|728954_730367_+|hypothetical-protein
MKASTIADREARGRAAREHSKRSSHRTVGELHRNPIELLKQSSEGRVERLVPLRYGRMSASPFTFFRGTAIIQAHDLSRIPDTGLTMPICGDGHLMNFGGFATPERQLVFDLNDFDEVATGPFEWDLKRLTASLVVAARHMRLSRGAAENLVMTAVTEYRDRMAQYAQCGALELWYDRITFELMAETALTPERRRAVRRGMEKAANRTHESLLEKMADYDGAHWTIRDAPPALFHVLGANTLFTEEETEAYKGANWRKMLERMWGDYLKTMSHDRRELLGHFTVHDIVFKVVGVGSVGTRCMVVLNVDHMGKPLFLQLKEARPSVISQYYKSPAIKHEGERVVQGQRMLQAASDIFLGWATGPLGRHFYFRQLRDMKLSANIELFDTDLLEGYAKLCGWIMARAHAKASGQAIEVSAYIGRGDQFAESLAAYAASYADQVERDYDAFLKACRSGELEARTDEDMAADFRV
>CP031466.1|AXL49038.1|727866_728880_+|outer-membrane-insertion-C-terminal-signal-domain-protein
MRNLNFVASRRLAIQAASCIAGLGFLFASNAAHAQEFSLFGGGSRAGSTNTYTWAINYQEGLGPYFAASFTWLNEGHIPDHHRDGQMIQLWGRIPVGNPQFVLQAGVGPYRYFDTTTAVQGGSYSDTHGWGVVYSVRAAYYASSRWITQLQLNRVHVQRGPDATSVMFGVGYQLDAPGSPGPRDWASGSTHKVTNNEVALYLGETIINSTSSPTALGGAIEYRRGLAKYLDVTVGYLHEGSSKVSRRDGITSQLWATRAFLDDKVTLALGVGTYYASNENENSLTPGPGAGKFSGLVTIAGAYRLTDHWDARIEWNRVVTRYDRDSDVIFGGVGYRW
>CP031466.1|AXL49037.1|725525_726515_-|flagellar-motor-protein-MotB
MNGRRSRASQQVDTPAPVIVRRSKKGDDHGAHHAGAWKIAYADFVTAMMAFFLLMWLLGSTSKYDKQGIEDYFNTPLSSLLGGNEGTAAARPSVVQGGGRDIADTRPGDGRKSQAEPAPPTTVPPIVSPSDAARLQQLKEKLTVLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFPSGSSKLQPYAVTILTQIGAALNDVENRISIAGHTDAVPYTAGPDGYSNWELSSERANAARRALVAGGMHGEKLLQVRGLADVLPLNSNVADEPTNRRISILVLNKAAELAFFHDGGRTSIDETSPASSAIPEVVGRLQPVNMSRSTP
>CP031466.1|AXL49036.1|723341_724823_+|sodium:solute-symporter
MSEANPVNPVAMTVFIAFFVLVTVIGFFAARWKRGDLTQLHEWGLGGRQFGTVISWFLVGGDFYTAYTVIAVPALVYSVGAYGFFALPYTIIVYPFVFAVMPKLWKIAHAKNHITAADYVQGEYGGKWFPAAVAITGIVATMPYIALQLVGMQVVIKGLGVTGEMPLIVAFVILALYTYASGLRAPAMIAFVKDIMIYIVVIAAVWLIPAKLGGYAHVFDAADTYFKAKGGATGIILKPAQFTAYASLALGSALAAFMYPHTMTAVLSSSSANTVRKNAIFLPAYTLLLGLIALLGYMAIAAGVHVKSASDMVPALFNTLFPSWFVGFAAAAIAISALVPAAIMSIGAANLFTRNLWRPLVSPDITPEAEASTAKVVSLVVKFGALLFIVFLPTQYAIDLQLLGGVWILQIFPAIVFTLYTRRLNTSGLFTGWLVGIVLGTGLAISQGLKPVFALHIGDATYPLYIGLIALAANVVVSFVVSVLSPRRVVVAV
>CP031466.1|AXL49046.1|739976_740984_+|threonine-aldolase
MIDLRSDTVTRPTAAMLAAMSAAEVGDDVWGDDPTVLRLQATVAERAGKEAGLFFPSGTQSNLAALMAHCARGDEYIVGQLAHTYKYEGGGAAVLGSIQPQPLENAADGSIPLEKIAAAIKPIDNHFARTRLLALENTIGGKVLPAGYVDEAVQLARRHGLSAHLDGARVYNAAVASGKPVAALCEPFDSISICFSKGLGAPVGSVLVGSQALIDVAHRWRKVLGGGMRQAGVLAAACLYALDHNVERLADDHANAAHLAAGLEAIDQVKVQSIATNMVFAHFPQQHCAPLEAWLKERGILTQMLYASRFVTHKDVSRADIDTFIAAVKGYFAAH
>CP031466.1|AXL49047.1|741031_742477_-|multidrug-MFS-transporter
MRNPTSHALSDKPSATTAQPFPADGPMTAANRRAMAAIMLAVALATLDTAIANTALPAIAADLHAAPAASVWIINAYQLAMVATLLPLAALGDIVGHRRIYIGGIALFTLASLACSLASTLPMLAAARVLQGLGASAIMSVNTALIRYLYPPHRLGRGLGTNALIVGVSFAVGPTVASLILSVAAWPWLFAVNVPLGLLALTFAWPALPHTGRGRHNFDPIAALLNVITFAALIFALGEAAQRASTQWVLSAAAIAVLFGVLLIRREAGHPAPMLPVDLFRRPVFALSAVTAVCSFAAQGLAFVSLPFYFEDVLHRSQVETGFLMTPWPVVVALAAPLAGSLSDRYPPGLLGAVGLAVMSAGMASLALLPVHPHVLDIGIRMAICGAGFGFFQSPNLKALMASAPPERSGGASGIVATARLLGQTTGAALVALSFGIAGRHGPTLALSAGAFFAGAASLASGLRLFAPSHRAGVHAKASAE
>CP031466.1|AXL49048.1|743095_745579_+|maltodextrin-phosphorylase
MSRRFFPEASMTAVDLEFDQLNSTVDALRRSISNRMMYGVGKDAVTAHPHDWLHAAALAVRDRLVARWMKTTRLQYEQDVKRVYYLSMEFLIGRTFTNALLALGIHDQVKEALADLGVDMETLVNIEPDAALGNGGLGRLAACFLDSMATLGIPGFGYGIRYEYGMFRQEIVDGEQVEAPDYWLRAGNPWEFPRPEIKYMVHFGGRTVQRGEHVEWIDTEHVNATAYDTVIPGYATSATNTLRLWSARATEELDLGAFNRGDYRNAVDTKNMSENVSRLLYPDDSTPAGRELRLRQEYFFVSATMQDLIRRYQRTHSTFGRFSEKVAVHLNDTHPVLAIPELMRLLVDVHHQPWDKAWQHVTKIFSYTNHTLMPEALETWDVEMLARLLPRHLEIIFEINAGFLKHVSEHSGHDGEMIRRISLVDEYGQRRVRMAYLAIVASHKVNGVSKLHSQLMTRNIFADFARIYPDRFTNVTNGITPRRWLAQASPSLSSLIDQQIGTQWRSNLFELEQLRSLRNDSAFIDAFREAKRQNKLRLVQRLAHHTKLRFDPDALFDLQVKRIHEYKRQLLNVLHVIVRYNQIRANPERDWVPRVVMFAGKAASAYRMAKTIIKLIGDVSEKVNHDPLIGDRLKVVFVPNYGVSVAELIIPAADLSEQISMAGTEASGTGNMKLALNGALTIGTMDGANIEICDAVGRENIFIFGHTADEVDSLRATGYRPRQVYEENPELRMALDQIRTGYFSPDDPLRFSDIFHTLVDWGDHYMVLADFAAFAKAQDEVDARFVDKRAWAESAIENVAGMGQFSSDRTIGEYARNIWHVNPLSME
>CP031466.1|AXL49049.1|745667_746771_-|hypothetical-protein
MFLSSLDAVRRYVRPHFRFQFRHSTAAALVAAGALAALTGCAVTFPTPTPPAPKAALINGGNDGLLIPLHVERADEDHARLGLPVQLDGKPLYMALDTGTQGARVLKSVLPGSGYASAGGVTSLSFANGVEILGPAVKVPFSLAGTTPTPIAAQAVDVIRCLPNARRCVGMDGYTGEFGWAFSGIVGVGAAQPGDSCCTQPLRALPGNIGQRYLVHSNFAKPYMVLSPSSSITKDYTMVPMTVAEDGTAQWPRGCVNVGGKMTFCAPLVFATGSTGMIRLEMDKAPNWTGDGDVGNVLDQGNYETAIGSGPWVHRYEKAQVTIVKAKPDANRIVVGLMAMQNIDVLFDFPRGQFGLYAAKESEGFAP
>CP031466.1|AXL49050.1|747035_747380_-|hypothetical-protein
MMLTSVATSEFSVSRAPRESRLPRRTHVVVPLVIIDVTVPGTSSAHGRRALHTALGDDLRLYVVTVDQQHERVTFRVEVTSRSLDDVIGLLTTALDRATLGRAQATVIRRPRDY
>CP031466.1|AXL49051.1|747526_747916_-|hypothetical-protein
MENPFNDRGVSVTRNALSSAGQVFPLRDIVDVQVVTVPKNKILPYTISLAGLVGAIAGGILRSPAGLVCGTMLIVVGWLTWATQDITHRLMVQTANGLREALMSTDREFVERVAAAVHEAKTVAAAPKA
>CP031466.1|AXL49052.1|748348_749914_+|hypothetical-protein
MFSTRAYRSSVAALLFLLFAVPSFGQSFRVQCPPTTPAHPTALPPGTGEPAYTGPSYTGQTSTSTGVINGAIKCQQISGGDGYATMANGVQTYLFAFGPLSGLADIKAGNPGTEFASVFNTVGDPRSDPTYNGAVGLVPDPDSVPPGQLTGHVDPRPIMDIGVMNGNEPAPMMAIDEDDEFFLTLTNVGMIMRPDLFERHTVHFHGYPNASSFYDGVPDASVAINIGASFTYYYLAPDAGTYFWHCHITPPEHLQMGMVGQIFVRPRQNRVPAGASLYSSLQKQQLDLRTACGTDILCTTPLPPSNGVLHVNNKSGTPTLYAYNDGDGSTAYDVEYPVQIHGFDPNFHFIGMTFNPEPFTDMKDKLFMLNGRSYPDTVNPNPLSTQVADGTPHFSQPLPTLINIPAGGKALLRISDLDVTEYQTLASLGIPMHVIAINARLLRDMSGNDLTYNTNSITLGGGESLDLILDASDTTKYKPGAIYYLYTPNLDHLANDQENFGGLMTEVHICNAVNPTTKSCT
>CP031466.1|AXL49053.1|759899_760397_+|membrane-protein
MPPAVLFASSVCLAAALVQGAAAQQSPPAAPKPPAATTLRHSPYLPVSMSQHAKNYYGMMKGIDNLSVRSTASGNLIRFSYRVTDPVAAHLLGEKTATAYLYGETSHAVLEIPVMDKIGQLRQTGPLETGREYWMVFSNKGGPIKAGERVDVFIGSLHVDGLIVE
>CP031466.1|AXL49054.1|760437_761277_+|hypothetical-protein
MSRFILKAISAASVAGVLASGSVAYAASAAGTAQAAAASHMSAAQIVERNVAARGGLQAWHAVNTITMSGQIEAGGKKNTRLPFTMMMKRPNKSRFEVRFNEQTAFQVYDGAQGWKVRPFLGRNEVEPYTPAEAKSAAASADLEGPLIDYASKGSRVDALGVESVEGHRAYVLKVTEKDNTSRRIWIDASSFLELKIDGEPRKLDGRMHNVAIFYRDYKKENGLVIPHTLETVVSGVKPTHKLTIDHVTVNPPTDDTLFAKPQLAMAKVPNQPAPATSH
>CP031466.1|AXL49055.1|761303_762140_+|hypothetical-protein
MTRIALWMLVGCLTAAVYASEQIPEGRDLSADQIVEKNIAARGGLDAWRKIQTMVWVGHVDSANTPSDELPFALALKRPNKTRFEMTVLNQRAVRVFNGKQGWKVSPSATGGGEARPYTMDELKSAHDEQVIDGLLIDHQAKGVDVTLDGIDKVDGHDAYRLAVKLPSGVTRHVWVDAQSFLDVKYDRAARGPRGPVTVEVKYSDYKDVEGLQIPFTIESGAAAAGKRDKLTIDKVSLNPPLDDTMFAKPASQGWHNSVSVNAEPSPPMPPALSRTSP

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Click the colored protein region to show detailed information

Crispr_ID: CP031466_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031466_3

922128-922198

Orphan

Consensus_repeat	Method
GGCCAATACGGTTCAGACATTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031466_3

>merge|CP031466|3|922128-922198|CRISPRCasFinder
GGCCAATACGGTTCAGACATTTCGCCGCAGAGCATCTTCAATGACATAGGCCAATACGGGTCAGACATTTC

>CP031466|3|3|922128-922198|CRISPRCasFinder
GGCCAATACGGTTCAGACATTTC	GCCGCAGAGCATCTTCAATGACATA
GGCCAATACGGGTCAGACATTTC

Protein	Signature genes	Signature genes Name	Protein_function
CP031466.1\|AXL49165.1\|928107_928341_-\|Uncharacterized-protein	unknown	unknown	unknown
CP031466.1\|AXL49158.1\|923563_923761_-\|excisionase	unknown	unknown	gnl\|CDD\|116439
CP031466.1\|AXL49162.1\|926109_927156_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274759
CP031466.1\|AXL49155.1\|916683_918375_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
CP031466.1\|AXL49164.1\|927552_928083_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274758
CP031466.1\|AXL49152.1\|914763_915150_+\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49157.1\|922475_923561_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271181
CP031466.1\|AXL49150.1\|913402_913705_-\|addiction-module-antitoxin	unknown	unknown	gnl\|CDD\|188241
CP031466.1\|AXL49163.1\|927152_927542_-\|prokaryotic-Ubiquitin-family-protein	unknown	unknown	gnl\|CDD\|163450
CP031466.1\|AXL49149.1\|912357_913236_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|375319
CP031466.1\|AXL49159.1\|923845_924607_-\|dinucleotide-utilizing-protein	unknown	unknown	gnl\|CDD\|163448
CP031466.1\|AXL49166.1\|928571_928778_-\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49154.1\|916387_916660_+\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49153.1\|915889_916321_+\|quinol-oxidase	unknown	unknown	gnl\|CDD\|225168
CP031466.1\|AXL49156.1\|920327_920828_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP031466.1\|AXL49147.1\|907236_908421_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173852
CP031466.1\|AXL49148.1\|910543_910864_-\|flagellar-transcriptional-activator-FlhD	unknown	unknown	gnl\|CDD\|179497
CP031466.1\|AXL49161.1\|925399_926113_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274756
CP031466.1\|AXL49151.1\|914365_914734_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|378915
CP031466.1\|AXL49160.1\|924603_925395_-\|jamm-isopeptidase	unknown	unknown	gnl\|CDD\|163447

Protein	Function_ID	Function_description	E-value
CP031466.1\|AXL49158.1\|923563_923761_-\|excisionase	gnl\|CDD\|116439	pfam07825, Exc, Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.	5.05086e-10
CP031466.1\|AXL49162.1\|926109_927156_-\|hypothetical-protein	gnl\|CDD\|274759	TIGR03742, PRTRC_F, PRTRC system protein F. A novel genetic system characterized by seven (usually) major proteins, including a ParB homolog and a ThiF homolog, is commonly found on plasmids or in bacterial chromosomal regions near phage, plasmid, or transposon markers. It is most common among the beta Proteobacteria. We designate the system PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein F. It is the most divergent of the families.	2.9367e-26
CP031466.1\|AXL49155.1\|916683_918375_-\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.16428e-44
CP031466.1\|AXL49164.1\|927552_928083_-\|hypothetical-protein	gnl\|CDD\|274758	TIGR03741, PRTRC_E, PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.	6.89526e-13
CP031466.1\|AXL49157.1\|922475_923561_-\|hypothetical-protein	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	5.65737e-28
CP031466.1\|AXL49150.1\|913402_913705_-\|addiction-module-antitoxin	gnl\|CDD\|188241	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module. [Mobile and extrachromosomal element functions, Other].	1.76122e-30
CP031466.1\|AXL49163.1\|927152_927542_-\|prokaryotic-Ubiquitin-family-protein	gnl\|CDD\|163450	TIGR03738, PRTRC_C, PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.	3.65223e-29
CP031466.1\|AXL49149.1\|912357_913236_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.04195e-26
CP031466.1\|AXL49159.1\|923845_924607_-\|dinucleotide-utilizing-protein	gnl\|CDD\|163448	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.	6.45403e-111
CP031466.1\|AXL49153.1\|915889_916321_+\|quinol-oxidase	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	6.09314e-18
CP031466.1\|AXL49156.1\|920327_920828_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.77746e-21
CP031466.1\|AXL49147.1\|907236_908421_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	8.23816e-153
CP031466.1\|AXL49148.1\|910543_910864_-\|flagellar-transcriptional-activator-FlhD	gnl\|CDD\|179497	PRK02909, PRK02909, flagellar transcriptional regulator FlhD.	1.36719e-51
CP031466.1\|AXL49161.1\|925399_926113_-\|hypothetical-protein	gnl\|CDD\|274756	TIGR03737, PRTRC_B, PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.	6.85246e-77
CP031466.1\|AXL49151.1\|914365_914734_+\|polyketide-cyclase	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.000283957
CP031466.1\|AXL49160.1\|924603_925395_-\|jamm-isopeptidase	gnl\|CDD\|163447	TIGR03735, PRTRC_A, PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.	1.05601e-73

>CP031466.1|AXL49156.1|920327_920828_+|DNA-binding-response-regulator
MVYDDGLTMSKALARSTVDMLVLDWQGTRLSGSEVLRSVRAVGGDRLPVLFASAETSEDSVVRAFASGADDYVGLPLRPGEFRERVAALLRRAYPDRFSAASFDVGPYHFDMSRRPQSLIQQGLFNSCSKFVQNSQCRFAVRGRIAPQNTETPGGARGRTTDQDAT
>CP031466.1|AXL49155.1|916683_918375_-|MFS-transporter
MNACTPPVSPALGRVLATVSVGFVVTQLDVTIVNIALPKIGANLHANVAGLQWVVDAYTLVFAVLMLSAGALGDRLGARRMYAAGIVLFAFASLACGLALDATMLVAARAVQGIGAAAMLPNSLALLNQSYGHDPKLRARAVGLWTAAGAIAIAAGPVLGGVLIAAFGWRSIFLVNLPICAAGLLATLVWLPRPESARKDAQQVVGAKAGAMSEAGAVTRATTGPTSGAMTGAGATTRTTTQAATRATTGPTAGATTGTTTGTTTQVSAKATTEPTVAPTAEATPRGIDLSGQTLAIVALTAFVAAVIEWRPLGLSHPLVAGGFILALIATAAFIVVESRVAAPMLPLSLFRKRTFNAAVLFGICVNLTYYGMVFVLSLYLQRVRGYSPLQAGLAFLPLTGGFLISNVASGWVVGRFGVRVPMIAGAITAGLGYGLLHFVDASTPLIGLLLPFLLIPSGMGLAVPAMTTAVLASVEAKRAATASAVLNTARQAGGAVGVAAFGALASGAAATQIVVGMQAATAISVGLLVISGVMGCLVHPEPHASSASKPRMTGSRHVGESR
>CP031466.1|AXL49154.1|916387_916660_+|hypothetical-protein
MIQSFEQIIGGKVTQLCASLGEGSTPHRVIISFADSAKTLVVLDASGLIGTIKAEIEQPEKLIADAIAKAQSEGLIERAIDTGTIQEASL
>CP031466.1|AXL49153.1|915889_916321_+|quinol-oxidase
MTRPVDSGVILIARIALAVLFLWGGVMKLLGYAGFVGYLHAKGVPFVQIAAPIATVIEALGGLLLIVGFKIRPLALILAVYTVAAAVLGHDFWNVTDPALQRDMVIHFWKNIGIAGGFLLLFVTGAGRISIDGARAPRGGLNL
>CP031466.1|AXL49152.1|914763_915150_+|hypothetical-protein
MHESAATAPGTVLTIARLSGAVDALCSAIAGFALLAGARAFTFTALLAWREPVLGGAGLVLLALVGWLRWQCRGDAARRIVRHSGLTMNRGQRTVRRGLATIGRNAPQGQSARTRAAGRQSNLKETPC
>CP031466.1|AXL49151.1|914365_914734_+|polyketide-cyclase
MNAHTDLIDRYFDAWNETDALRRRELIAATWAADADYRDPLLAGAGHDGIDAMIRAVHERFPHHTFRRTTEVDGFANRLRFSWALTTPAGEAIVKGSDFGVLDTHGRLQAVTGFLDQVPAAT
>CP031466.1|AXL49150.1|913402_913705_-|addiction-module-antitoxin
MSKVKTARFDASHYLDSDEMIAEYLNAALEEGDADLLLAAIADIAKARGIAKVAADAGLGRESLYKTLAPGSKPRMDTVFKLLRALGVKLNAVPEGVAPA
>CP031466.1|AXL49149.1|912357_913236_-|XRE-family-transcriptional-regulator
MNTLSPAHTLPSNGPTASRTVGDLLREWRQRRRMSQLLLAAEADISTRHLSFVESGRAAPSREMVMHLAERLDVPLRARNALLIAAGYAPLFRERPLTDPQLAAAREAVELVLKGHEPYPALAIDRHWTIVAANNALAPLLAGASPELLKPPVNAMRLSLHPEGIAASIVNWHAWRAHALSRLQRQVDVSGDDTLSALRDELAAYPAPPGAEAADQDDAAGSQIAVPLRLRTPIGVLSFFSTTTVFGTPVDVTLSELAIEAFFPADQQTSAALREFAASQRAEGQEVQAAKP
>CP031466.1|AXL49148.1|910543_910864_-|flagellar-transcriptional-activator-FlhD
MDRSSETLDSIREINLSYIMLAQRMLREDKPVGMFRLGLSSELADLLAGLSLAQIVKLAASDQLLCFFRFNDHSMLSALTQTTKHAAVAPTHAAILLAGQPAEQFA
>CP031466.1|AXL49147.1|907236_908421_+|acyl-CoA-dehydrogenase
MTNTHMWPPLSAPTVRDLAGLLDALRASAAQRDRDGGHAAGEKQWIADAGLLALAVPHEFGGSGARWPEIYETIRRIARVDSALAHLLGFTCLQVVSVNVWGNPEQRARYLGGTVEGRWWWGNAVNPLDTRLVASATGDGGYRLDGQKGFCSGTRGSHMMTVSGHDPSTGKAVFAVVPTTREGITVHEDWNPIGQRQTDSGSVSFAQVKVEPHEVLERADTPYASLRTLISQQVLTNLFVGIAQGALEEARAYVTQHGKPWISSGVDKATDDPYLIQRFGEMRLQAVSAEALAARAAYALEDAWQQGPALDAQTRAHVALATSEAKIVAHRAALDVSEKLFDACGARATHAPLALDRFWRNARVHTLHDPLDYRVRDVGRYALSGTLPEVSLYT
>CP031466.1|AXL49157.1|922475_923561_-|hypothetical-protein
MAARPRIRRRANWPANMHEPRPGYYTWRDPRDGKTYVLGRIDLALAIFEAQEANAKAVAGKVTRSLSERLDTPRETIGDLLDKMPVGKAKPETVRHRKYVDSAIRDEIGKVPCAALTTKHVADMLEKVEARGKMQWAVHIRSRMRAVCRRGMALGWMDRNPADATDKAKVTVKRRRLTFEEFQAIYEKAPQVALWLQNAMLLALVSGQDRSTVARWERSFQQDGHAVLTRGKTGVRIAIPVELRMDVLGMSLSDVIARCRSTGIVSKYLIHHIRPNVNAPKGAAIKIKTFTSKFKEARDLAGITGDDAPTFHEMRSLTKRLYMEQGGVDTKALLGHMTDVIADLYANSRGLEPLKVRISTR
>CP031466.1|AXL49158.1|923563_923761_-|excisionase
MKVRLDEWLKREFDPPPAIRTARLWINAGKIFPTPVKVGRSYYVEQNAVFQDGTVRPRLAQRIPQ
>CP031466.1|AXL49159.1|923845_924607_-|dinucleotide-utilizing-protein
MTHITPAHFLDRRVNIALIGCGGNGSQMLTGLARLNHALTALGHPGLHVTAFDGDTVSEANIGRQMFSPADIGMHKSIVLVHRLNAFFGLDWHARPIHASTSELVHLGAGIAILCVDSAAARAKLATTIGKTAAYVMDLGNRASDGQVIFGSRPTAAREGSTPLRWPYDVLPELIDTTVPEDDAPSCGLAEALERQELFINQAIVTPALGILWEFFRHGRLSWCGAFVNLKTGHVRPLAVDSLPGHAEVTNAA
>CP031466.1|AXL49160.1|924603_925395_-|jamm-isopeptidase
MEKLLTLFQDATQAGLRDIATALDRFSQGVADEIARAKPRAIAAAEDDEAFPLDVALFDSAPTVAVPKHAQFAPLLDVGHRFLMTAEGVFVEVRRPWLHVIQQLAKHSETGPRPPYGVVTPKIELAFGRLGVALPFVQAFAEEAQSALPNEHAAWMVWDKEKQALTYKPLHVSSTSPDEIKFDRPVLEPHESLAIDLHSHGAAPAYFSPKDDKDDAGEVKISAVLGGLGDGGTPSVAFRLCVLGMVIPLKVPVSAVFKVPEPA
>CP031466.1|AXL49161.1|925399_926113_-|hypothetical-protein
MKSVVIAQDNDVELQLDSALLFYRSEGTQYVYATQHSARVVNGLPTLLPGVPITLDQLAEIAEIAARKTSYRGFVHERVVYFAPNMLAWWIPACTRRVWFKSTDKIGERAGDARHPPLVFIVNRDSWSIFALRDNERPGPTTKLYTAPYYNVWENGEICVGNVTTPDAVNTASIKPFEDAFFRSRFTHPNNERLIHRRGGAERLWLDLLDGAEFPLDRLIDTKRTLADVIDNITTLD
>CP031466.1|AXL49162.1|926109_927156_-|hypothetical-protein
MSFSPIALPSLTDIPGVYTISSGESLTYPLARSLLESGVIEAEDVARRPRSELALATTALTRRWNRITHGMHLFDWNLQLEQALDGYFPDSLKRTDQLWAMVQTTNGPISCPQVCVGGAITVLEQLREGLGQTLLAALYDACSMLPTICTPAYALGIAQYTYWYGESDESVAIEEAMSLHDCQSREELIETFDFFTRDKFFRGMPEWAASPKRVLSRAQVKRAAGRDEFAAEVVAAMDTVWNIARFYGPFADVGTGGAGLDAIDLALVVRWTEDDVVGRVVDDFLQYIADGEFLSAASATPLAIVGGDIATWLKQMEATALLAKAVEHLLGILGREEYQAKTLVRVFA
>CP031466.1|AXL49163.1|927152_927542_-|prokaryotic-Ubiquitin-family-protein
MKTETLAREFRYNGAKLTDPSPTFSLHQVRDFYGNTYPEIVNAEIEGPEVVGNKNIYTFRRAVGTKGGAMTLEQLRAELERGPLTPSGEHRIEARAAEDQLARRLHALASRRVAGVRLQLPVSSMPVLP
>CP031466.1|AXL49164.1|927552_928083_-|hypothetical-protein
MSLFASLYPLAKRTTLTLLITAEGDQLRVNVTPRANDDTKGEKPLYPLSILATPDELDRDFAEAVSIYEPSTLSVLDQARAASTANGTVDAGTKGQSAPTSRGKGGRKRAAEQPAPTENDNGDGAGDTPPTDPRQTQIPGIEPAAETATSEIPAVTAEQDSSNAQSAAGDDGVDLL
>CP031466.1|AXL49165.1|928107_928341_-|Uncharacterized-protein
MANISQLAGMLPRDPKFREWLSSEAQVEQLTADEAAEVIRTVCQIDSRRALATDKAAAERFHNLLRRPFAEWRAKQH
>CP031466.1|AXL49166.1|928571_928778_-|hypothetical-protein
MDRSPLPRHLLRVEWQLLHMVGNFDSAIQKPEVRQTLESSARARELREQRRLRERGDVKRRASGDFDD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP031466_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031466_5

1785797-1785906

Orphan

Consensus_repeat	Method
CAAGGAAAGCCCAACGCCGTAGGCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031466_5

>merge|CP031466|5|1785797-1785906|CRISPRCasFinder
CAAGGAAAGCCCAACGCCGTAGGCACAAGGACAAGAACGCGTCGCGCAGGCAATCAATTCAAGGAAAGGCAACACCATAAGCACAAGAAAAGCCCAACGCCGTAGGCACA

>CP031466|5|5|1785797-1785906|CRISPRCasFinder
CAAGGAAAGCCCAACGCCGTAGGCACA	AGGACAAGAACGCGTCGCGCAGGCAATCAATTCAAGGAAAGGCAACACCATAAGCA
CAAGAAAAGCCCAACGCCGTAGGCACA

Protein	Signature genes	Signature genes Name	Protein_function
CP031466.1\|AXL49736.1\|1790766_1794678_+\|type-VI-secretion-protein-VasK	unknown	unknown	gnl\|CDD\|226054
CP031466.1\|AXL49733.1\|1783100_1784177_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
CP031466.1\|AXL49726.1\|1778082_1778424_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
CP031466.1\|AXL49730.1\|1780934_1781567_+\|hypothetical-protein	unknown	unknown	unknown
CP031466.1\|AXL49743.1\|1803634_1804114_-\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|226049
CP031466.1\|AXL49742.1\|1801656_1803495_-\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|274541
CP031466.1\|AXL49729.1\|1780077_1780749_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|130454
CP031466.1\|AXL49737.1\|1794674_1795667_+\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|226427
CP031466.1\|AXL49732.1\|1782306_1783080_+\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|239026
CP031466.1\|AXL49739.1\|1796712_1797822_-\|type-VI-secretion-protein-ImpA	unknown	unknown	gnl\|CDD\|274544
CP031466.1\|AXL49725.1\|1776475_1777981_+\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|143635
CP031466.1\|AXL49744.1\|1804197_1804701_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377536
CP031466.1\|AXL49738.1\|1795686_1796628_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|143586
CP031466.1\|AXL49735.1\|1788585_1789527_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
CP031466.1\|AXL49728.1\|1778680_1780081_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|273593
CP031466.1\|AXL49731.1\|1781677_1782310_+\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|226602
CP031466.1\|AXL49727.1\|1778477_1778684_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319923
CP031466.1\|AXL49741.1\|1800598_1801693_-\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|377755
CP031466.1\|AXL49734.1\|1784497_1785550_+\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
CP031466.1\|AXL49740.1\|1797887_1800563_-\|ClpV1-family-T6SS-ATPase	unknown	unknown	gnl\|CDD\|274528

Protein	Function_ID	Function_description	E-value
CP031466.1\|AXL49736.1\|1790766_1794678_+\|type-VI-secretion-protein-VasK	gnl\|CDD\|226054	COG3523, IcmF, Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].	0
CP031466.1\|AXL49733.1\|1783100_1784177_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	4.26887e-64
CP031466.1\|AXL49726.1\|1778082_1778424_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	8.19163e-50
CP031466.1\|AXL49743.1\|1803634_1804114_-\|type-VI-secretion-protein	gnl\|CDD\|226049	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	1.89817e-46
CP031466.1\|AXL49742.1\|1801656_1803495_-\|type-VI-secretion-protein	gnl\|CDD\|274541	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.	0
CP031466.1\|AXL49729.1\|1780077_1780749_-\|DNA-binding-response-regulator	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	8.19168e-110
CP031466.1\|AXL49737.1\|1794674_1795667_+\|type-VI-secretion-protein	gnl\|CDD\|226427	COG3913, SciT, Uncharacterized protein conserved in bacteria [Function unknown].	2.0906e-43
CP031466.1\|AXL49732.1\|1782306_1783080_+\|molybdopterin-binding-protein	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	6.80207e-91
CP031466.1\|AXL49739.1\|1796712_1797822_-\|type-VI-secretion-protein-ImpA	gnl\|CDD\|274544	TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).	2.00166e-118
CP031466.1\|AXL49725.1\|1776475_1777981_+\|signal-transduction-histidine-kinase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.96066e-36
CP031466.1\|AXL49744.1\|1804197_1804701_-\|hypothetical-protein	gnl\|CDD\|377536	pfam05638, T6SS_HCP, Type VI secretion system effector, Hcp. HCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head. Initially Hcp forms a hexameric structure with a central channel of 40 Angstroms. These hexamers pile up one on top of each other forming nanotubes resembling the gp19 tail phage tube.	3.13471e-49
CP031466.1\|AXL49738.1\|1795686_1796628_+\|flagellar-motor-protein-MotB	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.92309e-43
CP031466.1\|AXL49735.1\|1788585_1789527_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	2.60353e-06
CP031466.1\|AXL49728.1\|1778680_1780081_-\|histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	6.52319e-136
CP031466.1\|AXL49731.1\|1781677_1782310_+\|thioredoxin-reductase	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.80428e-54
CP031466.1\|AXL49727.1\|1778477_1778684_+\|glyoxalase	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.15143e-06
CP031466.1\|AXL49741.1\|1800598_1801693_-\|type-VI-secretion-protein	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	1.08438e-104
CP031466.1\|AXL49734.1\|1784497_1785550_+\|hydroxyacid-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
CP031466.1\|AXL49740.1\|1797887_1800563_-\|ClpV1-family-T6SS-ATPase	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0

>CP031466.1|AXL49734.1|1784497_1785550_+|hydroxyacid-dehydrogenase
MSTTFAYAATDATAPLAPFEIQRRELRAHDVQMEVLFCGVCHSDLHQARNEWKNTVFPVVPGHEIVGRVTAVGPDVTKYKAGDLVGVGCLVDSCRTCANCEEGLEQYCENGFVGTYNGVDRVDGQITYGGYSTQLVVDEAFTLRVPENLDPAGVAPLLCAGITTYSPLRTWGAGPGKKVGIVGLGGLGHMGVKLARAMGAHVVLFTTSPSKIEDAKRLGAHEVVISKNAEEMGAHANSFDFILNTVAAPHDLNPFLNLLRRDGTMTLVGAPEHDHPSPQVFNLIFKRRRLAGSLIGGIAETQEMLDFCGEHGITSDIEVIPMQGINDAYERMLKSDVKYRFVIDLDSLRK
>CP031466.1|AXL49733.1|1783100_1784177_-|AraC-family-transcriptional-regulator
MSTRSVEPASATCDPAEHVPAAGSPFDRGPAAGGPTDRGPADRGPADSAQQRLVDLFDLLAPKPGVTRSSFEGVNLMRANSPMPRMPVMYEPSIVIVCQGRKRGYLGDQVFQYDAQQYLVLSVPLPFECETEASPEAPFLGISVRVDLTMVAELLMALNETQGTAQNEPLGIYSTPLDPALSNAVQRLMEALASPLDARILAPGVVREICYRVLTGEQGDAIRAALTHQNHFGRIAKALRRIHADYHGQLDVDTLASEAGMSLAVFHAQFKAVTATSPMQYVKTTRLHHARLLMVQDGLNAGAAAARVGYESASQFSREFKRLFGLSPVDEVKRMRAVYDAPPPPRVVRPVARYVTAV
>CP031466.1|AXL49732.1|1782306_1783080_+|molybdopterin-binding-protein
MSESKRKDSRSAGVLLADHKPQIERLQRRLFLRSSLSIGALAMLSGCNMQDGDSVDKVLWAMSRWNDRVQGWLFDRNKLAPTYSASEITEPFPFNAFYPEFDAPDIDGSTYRLEVSGLVSDKRTWNLDQLRALPQASQITRHICIEGWSAIGQWRGVPFRTFLERIGADLSARYVGFKCADRYYSSLDMATALHPQTQLTLDFRDAPLPAKYGYPLKLRVPTKLGFKNPKHIAAIFVTNTNPGGYWEDQGYNWFSGL
>CP031466.1|AXL49731.1|1781677_1782310_+|thioredoxin-reductase
MPEPQARFIVHPLVVRITHWINAFAMLCMVMSGWAIYNASPFFPFRFPVWATVGGWLGGSIAWHFAAMWLLCANGLLYLAYGIGRGHFRRRLLPVYPRDVVHDAALAMRFKLPHDTAKYNAVQRALYLFVLLLGVLLVASGLSIWKPVQFSWLTALFGGFDFARRVHFVAMAGVAGFVVVHLALVLLVPRTLLPMLTGRARLSAHERSEA
>CP031466.1|AXL49730.1|1780934_1781567_+|hypothetical-protein
MKIVSANAMRAFVAPALVAASLFAAGSVAEAQTAAPTGVRGTVTSLSGDLLKVHTRDGRDVDVKLAKDTPIRGVTIANVNDIKPDSYVGTAAIPQPDGTLKALEVHVFPASMRGAGEGHRPWDLGSNSTMTNGTVGSLVVSNGRTITVKYKDGEKKVVIPQDVPIVALEAGDRALLVPGAKVVLFAHKEADGSMAANFISAGEHGITPPM
>CP031466.1|AXL49729.1|1780077_1780749_-|DNA-binding-response-regulator
MSILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALEHAYDLVVLDVMLPGIDGWEIMRALRARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVIRESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDMNFDSDTNVVDVAIKRLRAKIDHPFEKKLIHTVRSIGYTFGDGA
>CP031466.1|AXL49728.1|1778680_1780081_-|histidine-kinase
MKLWTERSLTARTTMLFASIACVVIGTLGMYFYHSAELSLQRRADVVLTGRVEHFSRIVHDLYSVSELKSRPLLFESMLGAEQDVLQFRRPGEAPFIDVNPGHVAVPALQAGTADHLPTPSDIRQTVLPDGVPVHWAIASVKAREDGSEVEVIAAHPMTQEVRMLAAYRNRILLATLSGMLAATLLAYYVLRRALRPVREIATRAAQISPASLSVRLDSESAPAELRQLTHAFNAMLDRLADGYQRLSQFSADLAHEIRTPVGALIGQTQVTLAKPRDAEEYQQLLESNLEELSRLSHIAENILFLAHADHAALSIDREPVDLRDELVRIADYFEGPADERGMRFTVEAQGVASVNPMLCRRAINNLVVNAVRYGANNTVVRLSGAQDEQGATVVVENDGAPIPGEQLDRLFDRFYRADAARSEFTESSGLGLAIVKAIMHLHGGTARVVCPVPGVVRFELRFPGV
>CP031466.1|AXL49727.1|1778477_1778684_+|glyoxalase
MLSHVFVGISDFERAFGFYSVLMDTLGLRLKFRDSDACWAGWMAADTPRPLFVCCHTPDTTPVTQAAG
>CP031466.1|AXL49726.1|1778082_1778424_+|alkylphosphonate-utilization-protein
MSTIPACPQCAMENTYPDGENYVCPDCAHEWPMTAAASADETDERVVKDANGNPLADGDAVVLIKDLKVKGSSITLKMGTKVKSIRLVGGDHEVDCKMDAGNFMLKAEYLKKV
>CP031466.1|AXL49725.1|1776475_1777981_+|signal-transduction-histidine-kinase
MLDNLPRGSAPTNDAPENAPLRDDSEMFELAPVSLWLEDFSGVRALFDVWRAEGVTDLRAHFAADQSRVAECAHSIRVIKVNQKTLTQFEAADFDALTRNLASVFRDDMLKTHLEELCQLWAGQAQFTSQTVNYTLGGRRLDVLLKGAVLPGHEERWDRVLVSVEDITELEGARHRVTLAEEYVRGLFEHSPVSLWVEDFSAVKRLLDDARSAGISDFRVFTDVHPEFVERCMQEIHVLDVNQHTLEMFMAKDKKTLLSRLPDVFRDDMRPHFREQLIDLWDGKLFQQREVLNYSLDGNEVHVHLQFSVLPGHEKNWDLVLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVTIIMADLNGLKRVNDQLGHAAGDALLRRAGEVLAKATDAPFHAARIGGDEFAILMPDTDERGGAAMVDAIRQLVDLNNQFYPGSLLSLSMGVATCQRGDRLEAGIQRADLLMYEEKHAHYANRPAEDAPGD
>CP031466.1|AXL49735.1|1788585_1789527_-|hypothetical-protein
MSAPESSNSKAPPSLLSDKAKGADGNGSRILANLEGRVAPPTDKPRRSKTPLLLVALLVIVAGGWGAWHMQQRLQTTSLASATPANAAKAAVPASAASGAAQVAAKAEAPAAASSQAATIVADDGDGKAPAASASVPASSDESRLSRALADGAEPSNASAPVASATAASATTVPAAKQGKSSTAVASNAKHETAHGKKESASASNRHASAPSAVAQAKKSRPAGNASKDDSDADLLAALVARTKPADAKAAGGNTATKVSASATPGDARLAERVKECGQRGFFEDQLCRWRVCDGHWGKDPACPGAAPQARQP
>CP031466.1|AXL49736.1|1790766_1794678_+|type-VI-secretion-protein-VasK
MRRILNVLTHTRTLSIIGLLALAAVLFIGADTLQIDPMWPAIVLGAVIALWLLVWAVRRLRARRANNKLGEMLEQQAEKQTETGPAPTPARQAELDVLRTRLVDAVKTIKTSKIGQMSGGSALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKNNAVIHGIGGTRNCDWFFTTEGILLDTAGRYSVHEEDRTEWLGFLGLLKRFRPKAPINGIIVTASIAELTGSKPEFAINLAKNLRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSGSDRHEYDRVWGATLPYEPDEKRDVVGLFDEHFEELYDGLKEISVAQMSINRGNKLSPGQLSFPLEFSTIKPALRAFLATLFETNPFQHKPIFRGFYFTSALQEGETNSAAATRIANRFGLSADSLPKPHSAFSKNGFFLRDLFSKVIFADRQTVKQFASPAKTRMRYATFFGFVAVLALALGGWTWSTIGNQQLADNVKADLDNVVRLQQNRNDLQSRLQAMDILEDRIDQLEQFRRDKPLAVSLGLYQGDRLEQHLLTEYYNGVRQILLDPVSQNLASFLKDVNAHPDQLAPLNRTPDAAAIPVSAHTAMAANSQGGLYSDASPTNVEDAYNALKTYLMLSDKRHVETAHLTDQVARFWRGWLETNRGNMPRDEMIRSAERMITFYLSRVSDNDWPMIDQNLGLVDQTRENLRRVVRGMPARQRVYEEIKARASTRFAPMTIARIVGENNTALVAGSYAIPGTFTREAWFQYVQPAIRDAATKELQAKDWVLNTSAHDDLTLEGSPEQIQKALVSMYKTEYAMHWQKFMQGIAVQSFGSFGQAVDAMNRLGDPQDSPIRKVLETAYDQTSWDNPSLFNANLKRAQTGVTSWFKNWFSRAPTGQLNANIDINGNPVEVPMGPIGQEFSALGRIVVSGDNGSMLKGYMDTLSKVRTRFNVIKNQGDPGPGARQLMQQTLDGSGSELADSLKYVDEQMLTGLTDSQRKALRPLLVRPLMAAYAVVIQPASVEVNKVWNAQVYQTFQGSLANKYPFAGDAKVEAGAGEIAQVFGPDGAIAKFVGTTLGPLAVRRGDTLTARTWGDMGLALTPDFTGGFARWVAPLAGGAAASSGQSSAEPQTVFQILPQPSSGTTEYTLAIDGQQMRYRNTPPQWTNFVWPNPSGSPGATLSATTFDGRTLQLVNEPGRYGLEKLINSAQRKRRPDGTFDLSWTQGNVTVAVSMRIISTSQASGGGSGDAPQQQSLRGLRLPSSVADVSAAANSVNATAAGATNATGTAGPTGTAGAAPAAAPAARQAAAAAAVSNTGGAQ
>CP031466.1|AXL49737.1|1794674_1795667_+|type-VI-secretion-protein
MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLATLDRWIAEAMELLTDDPRWKIVYENAKPMHFAFLGSRSKLAIAGHMVASQDQSSRRFPFLAATALEVEKPLTFLAHSPLAFARLWSRIASQMKPLLGMSEPAGALHALGETQVPIEIGGGPGNPHDGTFNDFVEHQTLSGLEQMLLASGHPVRLRGAMLALGSLLRPVMQSGSSHLERGLTLPLPNDPFYRSLVAAFWLELIAPFVSQADFELAIFIGTIAERERLIIGFNGASAKTLHSVVDPQAYAAHNIDIDDPEWIDEHAQNDHGINKLVSYLDQPQLSLRVSIDTFREAFTGA
>CP031466.1|AXL49738.1|1795686_1796628_+|flagellar-motor-protein-MotB
MRIAALLAGLLIGALAHADNDGPARVTPVDNSGIAIRTTILPASSSAQPGNAGPAVSTAGLASGTTGAGTGAISAAPPPANATPGQVVVGGKVPDEATKAAVLARLRDTYGAANVVDQIEVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRAILDQMAAVLSKMQTRTVAIIGHTDNAGNRASNIALSQARADAVKGYLVAKGISPEQMTTTGVGPDQPIASNDTTDGRARNRRIEFRAGS
>CP031466.1|AXL49739.1|1796712_1797822_-|type-VI-secretion-protein-ImpA
MPTNLNTLLAPISETSPCGEDLLFSADFDAIQHARRFEDPSLDQGEWVTDIKEADWPFVVERSSSLLQTQTKDLRLAVWLTEALAIEEGVTGLAQGYALLTGLCEKYWDHVHPLPEGDDTEYRLGNVAWLVGRTGDLLRAMPLTSSQGSSYSTIDWDVATHVAQAVKRDPDHADDIVRGKPSIEQIEASKRATPPAFYSTLLADLKAFDSAMLALEQELDRRAGDSAPSFRQAKDAYESVYRLVERFARELGVSAETSPPKAPKPEDHERAEPTFKTSPQREEPVLTTMPTTISPIAGIQSRAQAVAQLRAVARFFRSTEPHNPAAYLADKAAECADMPLHQWLSSVVKDDGSLAHIRELLGVKPEENS
>CP031466.1|AXL49740.1|1797887_1800563_-|ClpV1-family-T6SS-ATPase
MSTSLNTLIAKLNPTCRQAALLAANNCLARGHYEVDLEHLLLALLDEPASDVTLVLRASRVDAHALRTDIERELQRLKTGNTRTPVFSKHLIDLLEQAWLIASLDSQIGRIRSGHLLLALLTAPDLAQFAERMSPLLRDVRVTDLKHKFDELTAGSREVERSNAAENSTEGVSDASPADSAPGAPSKTPALDTYTSNLTQRARDGKIDPVIGREAEIRQTIDILMRRRQNNPIMTGEAGVGKTAVVEGLALRIAADDVPAPLKGVALHVLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPGETLAAAMLRGMAALMEKHFNVRVLDDAITEAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSSTPAAIDDTKKRLERIDAEIAALEREVASGALHDERLAELRNLREEDVKDLADDEARYDKERALVTEIVGLRAEIDAARVSSADAAQADKAQQAREMLATRVAELHALQGGQPMVPLQVDGHVVAEIVASWTGIPLGRMIKDEIQTVLNLQPLLGARVIGQDHALEAIAQRVRTASANLEDPNKPRGVFMFVGPSGVGKTETALALADVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGTMDDAEGREIDFRNTLIILTSNVGSQAVMQACLNKSAEELPGADELAETLRPQLYKAFKPAFLGRMKVVPYYPISDDVLAEIIDLKLERIRRRIESNHKAVFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEVAQQVLERVANGAAIERISVRASEAGEFDYTVV
>CP031466.1|AXL49741.1|1800598_1801693_-|type-VI-secretion-protein
MQTAQRRIDPGVVEQLLDEPHRFEFFQAVRILEKWFAQQTPSSHGRPGEIVAQRIAFRNSLSMSFPPSEIHSAQSYDDEGTALKETPQRTAALEAGSLHKVEITPAFFGLLGGQGALPLHYTEQIIAREQIRRDRAAREFFDVFSNRATALFYAAWKKYRLPFHYELDRDERYLPLLLALAGVADDDTRNSLQSGDGALFDEAIAGYALAARHRPVSAAYLQRTLSEYFKVRVRVEQFVGKWYDVPRDQLTVLGGVNATLGATALAGERVWQRDMRARLVIGPLDKADYEAFLPGADRAVALERMLTLLAGVTLEYEVSLVLRRKEVGPSMLSGGARLGWDAFLCTREADRDRADARYELHVIH
>CP031466.1|AXL49742.1|1801656_1803495_-|type-VI-secretion-protein
MEELLPYYERELSFLRRYSRDFAERYPKIAARLAMSGEHCEDPHVERMIESFALLGARINKKLDDDYPEFTEALLEVLYPHYLRPFPSCSIAQLGTSAALSHLTEPILVERGTELKSRPIRGVQCRFRTAYDVTLAPIRISEAKYTSVAMAPSATVLPGNATAIVSITFESTAAQLDLSALKVGALRTHLHGEQSFIAALADCLFVNAMATYVEADRRGVWTPLRESPVVQAGFDEDDALIDYPAKSHPAYRLLTEYFAFPEKFNFADFNLAAMTRASGRCQRLTLHVVLKEVRSDSHVARLLDSLSAHHFRLFCTPVVNLFEQHGEPIRISHQAISYPVIAEARRAFAYEVYSIDSVKLVRQQAHEESVIEFRPFYSLHHGEAARAGHYWFARRNDWVAQKSPGYETEISIVDIDFEPAAPQTDTLSLDLTCTNRDLPAGLAVGLEGGDLFLEGGSLTGSIAMLRRPTPSVRFERGRASHWRLISHLALNHVSLANSGLSALKEMLVLYDLRRTAVSARHIDGLVGIEQRAAVQWLPGKPFATFVRGIEIRLTIDEEHFVGTSLASFVRVIDTFFGLYVHLNSFVQLVVVSKRTGEEILRCKPRSGESILA
>CP031466.1|AXL49743.1|1803634_1804114_-|type-VI-secretion-protein
MKRFEPSFLDKLFDDEPHLPASPAMRQLSLDELKATVARDVEAILNTRIALTEHELAALPECQRSVLTYGLNDFAGLSLASHYDRTFICKSIQQAIARHEPRLQQVAVTLELNEQSTNALNFAIQALLVVHPAEEPVSFDAMLQPSTLQYSVTRARAKL
>CP031466.1|AXL49744.1|1804197_1804701_-|hypothetical-protein
MKDIYLKFGNPAIKGESADKDHAGWIEIDSWSHSITQPRSATASTAGGHTSERCEHADMQFTKDIDVVSPLIYQHASGGTTFDEVTIDFMRSDGEGNRIKYLEVKLKYVIISSATPSVVGEGLPTEQFSLKYAAVQWKYTQQKIGGNQGGNAQGAWSLTKNDKTYAV

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Crispr_ID: CP031466_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031466_8

2964140-2964229

Orphan

Consensus_repeat	Method
GATGGTGCCGCTGTTGGTCAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031466_8

>merge|CP031466|8|2964140-2964229|CRISPRCasFinder
AATCTGACCGCTGTTGGACAGCGTGCCGATGGAGCCGGAGTTATTGACGCCGTGCAGATTCCCGATGATGGCACCGCTGTTGCTCAGCGT

>CP031466|8|7|2964140-2964229|CRISPRCasFinder
AATCTGACCGCTGTTGGACAGCG	TGCCGATGGAGCCGGAGTTATTGACGCCGTGCAGATTCCCGAT
GATGGCACCGCTGTTGCTCAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP031466.1\|AXL50493.1\|2974863_2975715_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP031466.1\|AXL50498.1\|2980408_2980954_-\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|378454
CP031466.1\|AXL50496.1\|2977947_2979090_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
CP031466.1\|AXL50495.1\|2976697_2977927_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270452
CP031466.1\|AXL50484.1\|2941765_2947015_-\|outer-membrane-autotransporter-barrel-domain-protein	unknown	unknown	gnl\|CDD\|226973
CP031466.1\|AXL50482.1\|2938381_2939542_-\|glycosyl-transferase-family-8	unknown	unknown	gnl\|CDD\|223928
CP031466.1\|AXL50486.1\|2950057_2952271_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215016
CP031466.1\|AXL50487.1\|2952279_2954496_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223732
CP031466.1\|AXL50492.1\|2972810_2974793_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
CP031466.1\|AXL50497.1\|2979352_2980369_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP031466.1\|AXL50491.1\|2969955_2971056_-\|threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
CP031466.1\|AXL50479.1\|2932747_2933497_-\|nicotinamidase	unknown	unknown	gnl\|CDD\|238493
CP031466.1\|AXL50485.1\|2949272_2950043_-\|3',5'-cyclic-nucleotide-phosphodiesterase	unknown	unknown	gnl\|CDD\|293821
CP031466.1\|AXL50494.1\|2975729_2976605_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP031466.1\|AXL50483.1\|2939538_2941623_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379204
CP031466.1\|AXL50488.1\|2955172_2956939_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225387
CP031466.1\|AXL50480.1\|2934901_2936731_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP031466.1\|AXL50481.1\|2937473_2938385_-\|esterase	unknown	unknown	gnl\|CDD\|366780
CP031466.1\|AXL50490.1\|2966618_2967365_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP031466.1\|AXL50489.1\|2965528_2966167_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
CP031466.1\|AXL50493.1\|2974863_2975715_-\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.99085e-77
CP031466.1\|AXL50498.1\|2980408_2980954_-\|polyketide-cyclase	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	6.70834e-14
CP031466.1\|AXL50496.1\|2977947_2979090_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	5.30722e-176
CP031466.1\|AXL50495.1\|2976697_2977927_-\|extracellular-solute-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.12872e-52
CP031466.1\|AXL50484.1\|2941765_2947015_-\|outer-membrane-autotransporter-barrel-domain-protein	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	2.31626e-50
CP031466.1\|AXL50482.1\|2938381_2939542_-\|glycosyl-transferase-family-8	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	2.3509e-06
CP031466.1\|AXL50486.1\|2950057_2952271_-\|hypothetical-protein	gnl\|CDD\|215016	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time.	9.91688e-73
CP031466.1\|AXL50487.1\|2952279_2954496_-\|hypothetical-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.19804e-52
CP031466.1\|AXL50492.1\|2972810_2974793_-\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	1.71681e-154
CP031466.1\|AXL50497.1\|2979352_2980369_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.34474e-92
CP031466.1\|AXL50491.1\|2969955_2971056_-\|threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	1.14723e-135
CP031466.1\|AXL50479.1\|2932747_2933497_-\|nicotinamidase	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	8.55108e-93
CP031466.1\|AXL50485.1\|2949272_2950043_-\|3',5'-cyclic-nucleotide-phosphodiesterase	gnl\|CDD\|293821	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain. Cyclic nucleotide phosphodiesterases (PDEs) decompose the second messengers cyclic adenosine and guanosine 3',5'-monophosphate (cAMP and cGMP, respectively). Saccharomyces cerevisiae PDE1 and Dictyostelium discoideum PDE1 and PDE7, have dual cAMP/cGMP specificity. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.49781e-72
CP031466.1\|AXL50494.1\|2975729_2976605_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.51735e-79
CP031466.1\|AXL50483.1\|2939538_2941623_-\|hypothetical-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.53762e-48
CP031466.1\|AXL50488.1\|2955172_2956939_-\|hypothetical-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	2.22844e-93
CP031466.1\|AXL50480.1\|2934901_2936731_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP031466.1\|AXL50481.1\|2937473_2938385_-\|esterase	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	0.000145195
CP031466.1\|AXL50490.1\|2966618_2967365_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.56312e-57
CP031466.1\|AXL50489.1\|2965528_2966167_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.44004e-46

>CP031466.1|AXL50488.1|2955172_2956939_-|hypothetical-protein
MARVRGVRTVSAPMAVRFMKPRRSVLLHVVAGLGTVLGCAIPEASAQLATPVPNLPNVPNAGSTLRDQLQSLPPPALPASNAEIHIESPAGAGPSASTLRFAVKGFQMDGNTKFSTAALMPLLAPALGDARTLGDLDEAAARITDFYRAHGYLVARAYVPAQDIRDGMVGIAIVEGRYGKVELHNGSPVRDAVLQRYASSAHLGEVVDERRLDRVALLMQDATGASAVTGNLQAGDTPGTSDLALDVPPTRALAFSVQGDNYGIRPTGRDRIGGSLQWLSPLGFGDRLDARALTSVTGQTFGQLGYSAPIGSDGLRTGISLVESTYRLGADFASLDAYGHATVLSWTTSYPLIRSRTVNLNAEGGFDRKSLTDHASGTVDNKFDNVYVAGVNGNVLLGKTFASYALRMEAGDVHFESADALATDQSSAQSAGHYRKATYSFALYEAFTSKLQLYLALSGQQASKNLISSEKFSLGGPYGVRAYPTGEAPGDEGYLATAELRYALAQSVVPGQLGVYGFVDTGFVRDNVYPFTTDPNHRRLSGVGVGITLSGAPSYEVRLVYAHKLGNAAAVADTDHAGRVWLQLTKAF
>CP031466.1|AXL50487.1|2952279_2954496_-|hypothetical-protein
MTDKTFAFRTSPRDSGTGTPVTANVVAGLLSGFVSLCYSIAYGSLIFSGSLAHFVSVGILVTLVSGGVIALVVAVKSSLPFSIGGPDSNAVAVLVGLAGSVAADASATGLPPDGVLFTVLAAIAVSSIVTGTLLYLVGVSRRSSMIQFLPFPVVGGFLGGSGYLLLSGAMRTLTGHSLGWSALAALPDLPWLAWLPALVVCGTLLAAQGRVKPYALTPLGLGAGVVVFFAGMLAMGQTAEQWRAAGLLFDRESLSSLQLPLMLPRHQIDWTTIVTHLPECLAVAAVSALTILLNASGASVATGFDADFNQEMRAAGLANLLAGVTGGVIGYQSMTRTLLNRRAGATARLSGIVAGASCFAVIGLVPGVIAWLPKPVLVGLQLYLSWGILREWLIASYRKLGLADYLLVLLIVGVIAVEGVVAGIALGIAAACAMFVFNYSRISAVSREFDARACHSNVERSIEDTAWLREHGDAVVGVCLQGFLFFGTANLVLRRLGKRLGNAAGSKQHYVMLDFRQVSGLDVSTSATFLRLKQRCAANGDTLVLTALPPRAHEMLARARVLTADVKTFSDLDTGLEWVEDRLLARTDRLAAQTVSHGLSAIQPHFTEAALAQLERCMQTRRLAQDEPLFARGDAGDAVYFIEAGRVTVSLPLANGQSMRLRSFGAGTVVGEMALYTQQTRSADVRADEPTVVRRLTFDALQRLESADADTARQFHRFVVKVLASRLAVTNEAVRAAR
>CP031466.1|AXL50486.1|2950057_2952271_-|hypothetical-protein
MKRNLLRWIASLAVLAVLLGHAAGFYRLLPVDVLDNLIYDARLRLTMPRTPDDRIVIVDIDERSLAEVGRWPWGRDRMAMLVDRLFGAGASVVGFDIVMAEPDRSSGLASLEQLAAGGMRGDARYRAVLDGLRGQLDFDGRFAAALGGRPVVLGYYMSGRGDAHGALPSPVLSAAVFAGHQGGVREAQGYAGNLPVFQQASTSAGFFNPVVDFDGNVRRVPLLIRHGDKVYESLSLAIVRLVLGEPVLVPDFGERGDKGDDPLDTLVLKTPRRTVRIPVDEHGAALVPYRGRDHSFPYVSAADVLTGKVPADLLAHRIVLVGTTAPGLLDMRSTPVGSVYPGVEIHANLVSGMLDGTLRHEPAYASAIQLVAMLVIGLLMIFGLPWQAPLRATAATIALLALATAGDFALWTYGGGVLPFAASILLIATLFVLNMSLGFFLESRHRRQFANLFGQYVPPELVEEMSREPGRYSMDGRRAELTVLFCDVRGFTTIAETLEPEDLARWMNEYLGAMTAVIRAQRGTLDKYIGDAIMAFWGAPVADPNHAQHAVLGALRMREALTLLNTALAQRGKPAIRVGIGINTGPMTVGDMGSDVRRAYTVMGDSVNLGARLEGISRHYGVDVVVGESTREQTEGIVYRELDRVRVKGKREAVAIYEPIAEADRLPAVLAWELGQWDEALRYYRSGDWDAAEALLRPLVGAAPGSGLYALYLERIATARERACIEAWDGIHDFDTK
>CP031466.1|AXL50485.1|2949272_2950043_-|3',5'-cyclic-nucleotide-phosphodiesterase
MMKLTVLGCSGGIGGDAHRTTALLVDDTVLIDAGTGVADLDVDALERIDHVFITHAHVDHIACLPLMLDTVGERRAKPLVVHCTVATEMILRAHLFNGALWPDFTRIPSRDRPFLRFAPLEEGESCAIGERIFRPLPAEHGVPAVGYHVATPRGSVVFGGDSTVCPAFWHAVAQIPDLRYLIVETAFPDAKRELAIQSKHLCPSLLASQLPRHASGFRLLISHVKPGHADETMRELQRAAGQHEPEMLARGQVYWI
>CP031466.1|AXL50484.1|2941765_2947015_-|outer-membrane-autotransporter-barrel-domain-protein
MRKSGHQPQPAARRLTAISLAVTAALAAMTPHGAKSQTVISGAQTTTQIWTSGDFTVSSGASIVVSGQTAVAAGGSSLGTFSNSGTISASGAYGFLNGGGIGTLSNSGAITAGNDGIHNNAGFTIDTLINGGTITGGVYGIVNESFGSIGSLTNSGTIIGVHAGIDNIGTIDALTNSGMIGAVGGNSAIHNSGGTIGSLSNSGTISASGYYGVLNDGAIGTLNNSGAITSSNDGIHNNSGGTIDTLINSGTITGSGYYGIVNENGGSIGTLTNSGSISGGTYGIDNFGSISTLTNSVSGSISGVSMGIVNSGSIDTFTNSGSISGNVYDIENYGVIGTFTNNGSINSGNSGILNVGSIGTFTNNGLINSAMTYMAIGNLGTISALTNNGSIGISDYGILNYNKIGTLTNIGVISGGGFGIVSDVGIDTLTNSGLISGYSAIFNLGTIGTLTNSGTISGSSAGIANYVSAAAGELGSIGTLTNSGTIIASGDYGILNDGTIGTLNNSGTITSSTDGIHNDSIGTIGTLINSGSISSVLNNGTIGGGNTGISNISGTIGSLGNAGTIIGVSVGLYNGGSIGTLDNGGTITGSAGLGIGNGGTITTLTNDTGGTITGYTAGIGNASTGSIGTLSNAGTIVGSAAGVANSGTITKLGNVGAINGGTYGIDNTGTVGTLSNSGTIGGGYGLYNAGSIGTLSNSGAISGTTTGIINWSSIDTLDNSGTIAGHTLMGITNGGTITTLTNDTGGSITGQTGVYNGGTGSIGTLTNNGTITGSFAGVQNSGGTITQLTNNGAIVGNVYGALNLGTITALNNAGTISGNSGINNGSTGSIGTLANSGTISGAGLGIVNMGSIGVLRNSGSLTGGLFNSGSIDTIQNSSGIDGQSGSGVGNFGSIGAIVNSGSIYGANGIDNGSTGSIGTLTNSGTITSIVDDGSIGTLTNSSTITGIVNGGSIGSLTNSGSWSMSGVVGGSIASLTNSGTIGGSAGTGIANSNGIIGTLSNSGVISGTTYGIQLTSLPAASKWGVGGASITSLINAAGGAIFGGQTGIYLDGTIGSLVNNGTISSPGNGLFNSSTGSIGTLTNGSTGVISGNTGINNQNAIGALTNDGTITGSNYAIYNGSTGAIGAFTNSGVIAGNIENDSANDLAINGGSGSTFGTLTGLGGAIGTITNTNSNVVFGSGNLLLNDHINVGGNTVVNNAATLQVNNAVTITGNYSQGSAATLLVGVASGAVTTGSLASDSGYGRLVVSGSATVASGSSITLLKTGSYAFAAGQRYVVIDAASSGTNYNAGTLNYSAVGFTGALSAATVTASGHSDLVVTLDSGTSTSGSGTSGSGTSTSGSDTSTSGSGTPTSGTTSTITSTPSAPKLATQPNAVSSLGGLLGYTGISTDLLNLYNAATALSVGTSAEANRAGAQLGPASQGAASSAATAPTFDVLTVIANRADSLRLGQAYGESGGQSGVSTGESAPDNAVWGQVLGGHASQGNAVEADGFSANYGGLLFGADRAINDRWRAGGAFSYTTSAINNTGDSAGDTTRVNAYGLIGYASYTAPTWYANLSAGAVLQHYDTTREVSFTGFSGTAQGRFDGQQYVARAEAGYPLVLGAYTLTPLSSLTYSYLRQNGYTESGGSGAALSVQASHATSVKSDLGAKLERGFATPYGVLVPDVGAAWRHEYVHGRQLTTSSFAADASGETTFTTTGASPVSDMAVVSAGVTLLRASNLTLTLRYELQAAPRYVSQTGSVRLRQLF
>CP031466.1|AXL50483.1|2939538_2941623_-|hypothetical-protein
MSSTANSDTLSIPEALNRAYAHWNAGQADQAEQYCQRVLAAWPGQADALHLLGLMAHAYGNLDLAIAHLREACKAPRAPAIYSSNLAEMCRQKGLLAEGEEAARRAVSMDANLVSGWNNLGVLLQEAGKLEQSLECLARVVTLTPDSPEAHNNLANTFRRLNRLDHAEAHYSRALALNPDYAEAHSNRAFLLTALGRRDEAAEAARRAIGLNPRLVDAYLNLADVEASRHRYGAALQALDALQSFAPQHPAGLNARAQTLKQLERNDEALHFAQQAVAVAAQSADAHNTLGQVLQALGRHDEALAAFEHAAALPGTVAEEALVGRATLFMETGRKDEAMAAFDRALAAFPGSMKVLGARADAKTFAHGDPDIEAMETALAEGDRRPVDERLAAHFALGKAYLDVGDAPRAFQHLDAANRQKRATFAYDTATAQRWLRQAADTFTPALIERFDAAGAPSELPVFIVGMPRSGTTLVEQILASHPQVHGAGELSTLRLIVEGSGTFPDFMQSVSREDLARLGRAYLARVTPLAQGKSRLVDKMPGNFFYSGLIPLILPGARIIHCRRDPVDTCLSCYTKQFAGEQPFAYDLTELGTFYRAYEKLMTHWRDVLPPAHFIEVDYEAVVDDLEGEARRMVDFLGLPWDDACLKFHENRRVVRTASVNQVRQPVYATSKGRWRRYADHLGPLLAALGIDA
>CP031466.1|AXL50482.1|2938381_2939542_-|glycosyl-transferase-family-8
MMNAPDIASIERQARALLANGRFAEAEAQVRPLLASGSGPLALWGVLADAIRPQGRIEETRAIQDMLVTHMPGNLTARFNLAETLLLLGDFERGWREYHHRYGMPHTTMIERKVQRPRWNGRPIPGKTLLIHDEQGYGDTFQFLRMVAWAKARSQARVVLEVNADSLSIAQRCNGFDDIIARGTLPPAFDMHCELMSLPMVMGLKLTDLPGNMPYLCADPHRIEKWRTRLAGLPRPLVALVWAGRPTHVNDANRSMALADLAPLAMPGVTFLSIQKGPAAAQAATPPAGMSLVSLSDEIEDFEDTAAILSVADLLISVDSSPVHLAGALGRPAWVMLPFVPDWRWLLERTDSPWYPGMRLFRQPAHGDWQSVMAAIATHLASLRGP
>CP031466.1|AXL50481.1|2937473_2938385_-|esterase
MTMVRRTSESKGMRARIAAAVLAMLLLPGAMTGCTGLDPNVHADSLAASAGLIREQVDAGGFVLTAFARISRPDQPLTVYIEGDGYAWMSRSMPSPDPTPHQAMGLALAAADGSANVVYLARPCQFTPMSLNPRCGIPYWTGKRFAPEVVASLNGAVDRFLARLNPQPGQRAHRLNLVGYSGGGALAVLVAARRTDVVSIRTVAGNLDDEYVNRLHGVSPMPESENAIDVAARVAAIAQIHFTGADDTVVPPEVAQRFVEREGAQCAQVRTVPGVGHDGDWAARWPALLAIRPTCVERSMGAT
>CP031466.1|AXL50480.1|2934901_2936731_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGAVAQRNILPNLVDGLKRLEYRGYDSCGVALYQDRQLVRSRSVERVANLQDEITRLGLSGYTGIAHTRWATHGKPVTANAHPHFSPGADAPRIALSHNGIIENHEALRATLEARGYVFASQTDSEVIAHLIDHLYNGDLFEAVKDAVGQLRGSYAIAVICRDEPHRLVGARDGMPLVVGVGEGENFLASDAIALSNVTDQIVYLENGDLVDVQLHRYWIVDGGGQRVERRVHTVAAHSGAADLGLYRYYMQKEIFEQPRAVADTLQDVTSIMPELFGDNAWRVLNAVDSVLLLACGGSFHAALTAKYWIESLAQLPVNVEIASEYRYRDSVPNPNTLVVAVSQSGETADVLGAVQVAKQYGMHHTLAICNVPTSALARECSLTFFTRAGIEIGVASTKAFTTQLVALFLLALTLAQSRQCLSEQDEQHHLRALRHLPDAMTKVLAMEPQIIAWAEQLTRRQDILFLGRGMHYPVAMEGALKMKEISYIHAEAYAAGELKHGPLALVSDEMPVVAVAPNDRLLEKLKSNMHEVSARNGKLYVFADIDCGISAGPDVEVIRLTEYYGLLSPILHTIPMQLLAFHAALARGTDIDKPRNLAKSVTVE
>CP031466.1|AXL50479.1|2932747_2933497_-|nicotinamidase
MAENHRRALIKSTAVLGLAHLCGLGSLSVLAASAVSGKHIKPGSKSALIVVDVQNCFIDGGTLPVKGGAEVVPVINELAGRFENIVITQDWHTAGHASFASSHPGKKPFETAQLSYGTQVLWPDHCVQGTDDAALDKDLKLPTAQIIIRKGFHKDMDSYSAFEEADHKTETGLSGYLKQRRIDTVFVTGLATDFCVAWTAMDARKAGFEAYVIEDATRPIDLNGSLAAARKNMDRAGVKRIQSKDILST
>CP031466.1|AXL50489.1|2965528_2966167_+|DNA-binding-response-regulator
MQSTRTGQQPFFIHVAIVEHDAGFVDALTQAVNGAPGMRLTGVAGTRAEGLALLEDPPADVLLVDLRLPDGPGIDVIHTAARQWALCNIMVSTNFGDEAHVMRSIEAGATGYLLKDSSPTKMVEEICSLASGGSPISPIVARQILARVRQGGAESGGRNAGFVPLLSASEVEVLDQITKGFQTQEIAERMRLSPFTVKTVVRRIYGKLRVAS
>CP031466.1|AXL50490.1|2966618_2967365_+|DNA-binding-response-regulator
MPSPHAAANQSVPHEQGALSIRVAIVEDDPGFLGTLSQAVSAAPDMCLTGIAGSRAEGLALLEGPPADVLLVDLGLPDGSGIDVIQATARQWTACNIMVSTSFTDEAHVVRSIEAGAAGYLLKDSPPARIVDEIRSVAGGGSPISPIIARQILARFRQGDTASPRADTAAHAGVESEPPAAASPLLSARETEVLVLITKGFTAQEIAKLMQLSHFTVRTFVRRIYGKLKVTSKAEAIYEARTLGLLSD
>CP031466.1|AXL50491.1|2969955_2971056_-|threonine-aldolase
MDSSDRPQGARAPALGFTSDNIAGASPEVVEAIAASSAGQASPYGADDLTARVERKLSEIFEREVDVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPASFTNGAKLVAVDGQFARMSPASLRSAARVKVGDVHSTQPSCASITQATEEGGVYTLDEIGALAEVCKASSIKLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVFAAEAIVLFDASLAPEMGYRRKRAGHLFSKMRFLSAQIDAYLSDDLWLRNARQANDAAQRLSRGLAGLGGLGGVEVLGATEANIVFCRLPATAIQALLQAGFGFYHDRWEQNVVRFVTSFSTTIEDVDNLLAHVTRAVVAHQSGNR
>CP031466.1|AXL50492.1|2972810_2974793_-|beta-galactosidase
MKVGVDYYPEHWDSTIWEEDAQRMQGGGITLVRLAEFAWSRLEPKEGEFDFAWLDAAIDTLGRYGIQVVIGTPTATPPNWLVAKCPDILPLDSKRQPMYPGVRLHRCYNSPSLRRYTQIIVEKLTRHYGRNPHVIGWQTDNEMIGNDSHSDAANSDFRLWVQRKYGDLDTLNREWGTVVWSGEYSDWSQITTPLGGSPYLNPSYLLDYHRFCSDSVADFNRFQARLIRENCSGQFITHNLWGYPVVNDYYDLFDSMDFASVDYYPSTDLANDSKARVYHGALTLDLTRGIKQKNFWVMEQLSGTPGCWHPMSRMPYPGMIRAHAWQSVARGADTIVQFRWRTARIGAEQFWHGLHDHHGKPGRRFEEFVRFSEEVRRLSPLLDGTSVINDVAMLFSHEQLNALKIQPQADGFDYLANFKQLHRAFLRLGIGTDVINWTSDIDRYRLVVAPFLFLENEAVVEKLRNYVAQGGTVIFTTRSGVKNMNNVCLPTSLPGALTDVVGAVVDEYDPVGNDRQGLILHGKLDTTCSQWCDILSPTTAETIAVYSTDFFAQRAAITRNAYGRGTAYYIGSVLDDHGYRTLIGDIAADLDLAVFNNLPAGVELSVRSGNGKRLLFVLNLTNNANEVQLPVADARSALTGHSIAQPFVLEPMGVEVLLLE
>CP031466.1|AXL50493.1|2974863_2975715_-|sugar-ABC-transporter-permease
MYPLPIAHWKPANRTFYKVSLPIALAVWLLPLLAVLVTSIRSSDELLQGNYWGWPHQFAALTNYRTVLVDSPMLHYAWNSCLITFPSVIGAIVLSAMAGFALATYPFKGNAAVLATFVAGNFVPIQVLMIPVRDLTLKLGLFNSVGGLILFHLSFQTGFCTLFLRNFIKELPYELVEAARVEGASEWQLFYRIVLPLIRPALAALAVLVFTFVWNDYFWALCLTQGDHAAPLTVGVAALQGQWTTAWNLVSAGSLLAALPSVLIFFAMQRHFVAGLTFGATKG
>CP031466.1|AXL50494.1|2975729_2976605_-|sugar-ABC-transporter-permease
MSASNVASPLARRRRRAALLFLAPACLMFTAYVIYPIVRSVLLSFYNWDGVGPSSFVGLANYRELFHSDTFYTALGNNLLWLALTLLAPPAGLAFALYLNQAMRGIRLAKSLFFAPFVIPGVVVGLVFSWFYDPAFGLLKVLVGHGIPVLGNEHMATFGIIAAALWVQIPFCMILFLTGLTGINPEVIEAGRLEGARGWSLLWHVVLPQLRPATFMAVTLTIIGALRSFDLISVMTGGGPFDSSTVLAYFMYDQAIKYFRYGYSAAIAVVLFLIMLVFIAYQLRRLLRTDH
>CP031466.1|AXL50495.1|2976697_2977927_-|extracellular-solute-binding-protein
MKQGFRLSLLGAALVFAAQVHAGTLTVNIAFKGANQRAFWDTAIAEFEKANPDVNVKAAFIEEEAYKVQLPGWLISEAPDIVKWHEGERMRYYVERGLLEDLSGDWQKNGWNASLASLKEPSSYGSKQYALPTDYFSWGMFYRKDLFDKVGIKGEPRTWDEFLDACKKLKAAGIAPIAVGGRDSWTLAAWFDYIDLRLNGYAFHMQLMNGKVPYTDARVKKVYEAWKVLIDNKYFVDNPLAYTLDSSQPLLIQGQAAMMLMGSFIAGALPDTVKPKVGYFQFPLMDPKIQVAEDGSADCLNIPVKAKNKVDARRFLAFMSKPEMDGRWAKAFGSLPANNQATVSDDPFTKTGFNILSNTKGGIAQFYDRDMTKEMADEGMKGMQRFISDPSTLDQVLAHLEETRTRIYK
>CP031466.1|AXL50496.1|2977947_2979090_-|sugar-ABC-transporter-ATP-binding-protein
MAAISLRGISKEFDGNPPVLRDVNLDIAEDEFCVFLGPSGCGKSTLLRIIAGLEDPSAGEISIGSRVVNTVPPARRGVAMVFQSYALFPHMTVAENMSFGLKLAKLPASEVDRKVREAARILQLEPLLDRKPAALSGGQRQRVAIGRAIVREPGVFLFDEPLSNLDATLRGQTRVEIARIHRRFSTASMVYVTHDQVEAMTLADKIVLLNVSRDAAGSGSIAQIGTPMDLYLRPNSRFVAGFIGSPQMNFLPASVSHVDGSSVTVILNSSQEPVRVGSVARRLEPGQPVTLGVRPEHVSVTHTEPASPEKTSAAHLTRPVSLIERLGEQSYLHCNDPDGATLLVKVQGNTPVRVGETVRLAIDPASCHLFNQDGLAVCAA
>CP031466.1|AXL50497.1|2979352_2980369_+|LacI-family-transcriptional-regulator
MATIKEVAALAGVTPTTVSNVLRGRGRVGTETRERVLEAVAAKGYRPNLNARALVERRAPTLALMLGCITNPFYPEFTLQANNAARRHGRFLLVCNTDYEPDGGTGFLADVAGSLSDGILVANNGDLHIDELTAIQAAGTPVVISIWESPDISPGIPCVAFDSHKAGFIATEHLLDLGHHRIGALIGSAKNGIHGGRYRGFHDALRSRKVKHIQADARFVTDSYQGGFDAAVDLLKARPDLTALFVSNDLPALGALNAAATLGLRVPEDISIVSITNIELASQSRPALTTVAIPTAEMAEQSIDLLIKLGAGEMDVPAMIRTADPVLVRRASTAPVKK
>CP031466.1|AXL50498.1|2980408_2980954_-|polyketide-cyclase
MKKRTRYLTAILAVLVTIALLFVPLPQRVLIDTRVSTVALIQRPPEIVFDYVTTPAHWPVWHPSSLAVNGAVDHPLDLGEQVTEQFRVAGRRGSVVWTVTAREPPRKWTIEGKIAGNPAGAVTYSLTSTASGTHFERVFTYRAPSLWFAILNWLVLRARIQDESDQAVLRLKNVLETVTQN

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Crispr_ID: CP031466_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031466_10

2964722-2964876

Orphan

Consensus_repeat	Method
GATGGTGCCGCTGTTGGTCAGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP031466_10

>merge|CP031466|10|2964722-2964876|CRISPRCasFinder
GATGGTGCCGCCGCTGGTCAGCGCACTAATCGAACCGGTGTTCCAAATGCCGTAATAAGTGCCGCTCATACTGCCGCTATTGCTGAGCGTACCGATCGTGCCGGAATTGTAAAGCGCCGAACCACCGGCACTGATCGTGCCGAGGTTGTCCAGCG

>CP031466|10|9|2964722-2964876|CRISPRCasFinder
GATGGTGCCGCCGCTGGTCAGCG	CACTAATCGAACCGGTGTTCCAAATGCCGTAATAAGTGCCGCT
CATACTGCCGCTATTGCTGAGCG	TACCGATCGTGCCGGAATTGTAAAGCGCCGAACCACCGGCACT
GATCGTGCCGAGGTTGTCCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP031466.1\|AXL50493.1\|2974863_2975715_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP031466.1\|AXL50498.1\|2980408_2980954_-\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|378454
CP031466.1\|AXL50496.1\|2977947_2979090_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
CP031466.1\|AXL50495.1\|2976697_2977927_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270452
CP031466.1\|AXL50484.1\|2941765_2947015_-\|outer-membrane-autotransporter-barrel-domain-protein	unknown	unknown	gnl\|CDD\|226973
CP031466.1\|AXL50482.1\|2938381_2939542_-\|glycosyl-transferase-family-8	unknown	unknown	gnl\|CDD\|223928
CP031466.1\|AXL50486.1\|2950057_2952271_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215016
CP031466.1\|AXL50487.1\|2952279_2954496_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223732
CP031466.1\|AXL50492.1\|2972810_2974793_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
CP031466.1\|AXL50497.1\|2979352_2980369_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP031466.1\|AXL50491.1\|2969955_2971056_-\|threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
CP031466.1\|AXL50479.1\|2932747_2933497_-\|nicotinamidase	unknown	unknown	gnl\|CDD\|238493
CP031466.1\|AXL50485.1\|2949272_2950043_-\|3',5'-cyclic-nucleotide-phosphodiesterase	unknown	unknown	gnl\|CDD\|293821
CP031466.1\|AXL50494.1\|2975729_2976605_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP031466.1\|AXL50483.1\|2939538_2941623_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379204
CP031466.1\|AXL50488.1\|2955172_2956939_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225387
CP031466.1\|AXL50480.1\|2934901_2936731_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP031466.1\|AXL50481.1\|2937473_2938385_-\|esterase	unknown	unknown	gnl\|CDD\|366780
CP031466.1\|AXL50490.1\|2966618_2967365_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP031466.1\|AXL50489.1\|2965528_2966167_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
CP031466.1\|AXL50493.1\|2974863_2975715_-\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.99085e-77
CP031466.1\|AXL50498.1\|2980408_2980954_-\|polyketide-cyclase	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	6.70834e-14
CP031466.1\|AXL50496.1\|2977947_2979090_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	5.30722e-176
CP031466.1\|AXL50495.1\|2976697_2977927_-\|extracellular-solute-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.12872e-52
CP031466.1\|AXL50484.1\|2941765_2947015_-\|outer-membrane-autotransporter-barrel-domain-protein	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	2.31626e-50
CP031466.1\|AXL50482.1\|2938381_2939542_-\|glycosyl-transferase-family-8	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	2.3509e-06
CP031466.1\|AXL50486.1\|2950057_2952271_-\|hypothetical-protein	gnl\|CDD\|215016	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time.	9.91688e-73
CP031466.1\|AXL50487.1\|2952279_2954496_-\|hypothetical-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.19804e-52
CP031466.1\|AXL50492.1\|2972810_2974793_-\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	1.71681e-154
CP031466.1\|AXL50497.1\|2979352_2980369_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.34474e-92
CP031466.1\|AXL50491.1\|2969955_2971056_-\|threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	1.14723e-135
CP031466.1\|AXL50479.1\|2932747_2933497_-\|nicotinamidase	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	8.55108e-93
CP031466.1\|AXL50485.1\|2949272_2950043_-\|3',5'-cyclic-nucleotide-phosphodiesterase	gnl\|CDD\|293821	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain. Cyclic nucleotide phosphodiesterases (PDEs) decompose the second messengers cyclic adenosine and guanosine 3',5'-monophosphate (cAMP and cGMP, respectively). Saccharomyces cerevisiae PDE1 and Dictyostelium discoideum PDE1 and PDE7, have dual cAMP/cGMP specificity. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.49781e-72
CP031466.1\|AXL50494.1\|2975729_2976605_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.51735e-79
CP031466.1\|AXL50483.1\|2939538_2941623_-\|hypothetical-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.53762e-48
CP031466.1\|AXL50488.1\|2955172_2956939_-\|hypothetical-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	2.22844e-93
CP031466.1\|AXL50480.1\|2934901_2936731_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP031466.1\|AXL50481.1\|2937473_2938385_-\|esterase	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	0.000145195
CP031466.1\|AXL50490.1\|2966618_2967365_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.56312e-57
CP031466.1\|AXL50489.1\|2965528_2966167_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.44004e-46

>CP031466.1|AXL50488.1|2955172_2956939_-|hypothetical-protein
MARVRGVRTVSAPMAVRFMKPRRSVLLHVVAGLGTVLGCAIPEASAQLATPVPNLPNVPNAGSTLRDQLQSLPPPALPASNAEIHIESPAGAGPSASTLRFAVKGFQMDGNTKFSTAALMPLLAPALGDARTLGDLDEAAARITDFYRAHGYLVARAYVPAQDIRDGMVGIAIVEGRYGKVELHNGSPVRDAVLQRYASSAHLGEVVDERRLDRVALLMQDATGASAVTGNLQAGDTPGTSDLALDVPPTRALAFSVQGDNYGIRPTGRDRIGGSLQWLSPLGFGDRLDARALTSVTGQTFGQLGYSAPIGSDGLRTGISLVESTYRLGADFASLDAYGHATVLSWTTSYPLIRSRTVNLNAEGGFDRKSLTDHASGTVDNKFDNVYVAGVNGNVLLGKTFASYALRMEAGDVHFESADALATDQSSAQSAGHYRKATYSFALYEAFTSKLQLYLALSGQQASKNLISSEKFSLGGPYGVRAYPTGEAPGDEGYLATAELRYALAQSVVPGQLGVYGFVDTGFVRDNVYPFTTDPNHRRLSGVGVGITLSGAPSYEVRLVYAHKLGNAAAVADTDHAGRVWLQLTKAF
>CP031466.1|AXL50487.1|2952279_2954496_-|hypothetical-protein
MTDKTFAFRTSPRDSGTGTPVTANVVAGLLSGFVSLCYSIAYGSLIFSGSLAHFVSVGILVTLVSGGVIALVVAVKSSLPFSIGGPDSNAVAVLVGLAGSVAADASATGLPPDGVLFTVLAAIAVSSIVTGTLLYLVGVSRRSSMIQFLPFPVVGGFLGGSGYLLLSGAMRTLTGHSLGWSALAALPDLPWLAWLPALVVCGTLLAAQGRVKPYALTPLGLGAGVVVFFAGMLAMGQTAEQWRAAGLLFDRESLSSLQLPLMLPRHQIDWTTIVTHLPECLAVAAVSALTILLNASGASVATGFDADFNQEMRAAGLANLLAGVTGGVIGYQSMTRTLLNRRAGATARLSGIVAGASCFAVIGLVPGVIAWLPKPVLVGLQLYLSWGILREWLIASYRKLGLADYLLVLLIVGVIAVEGVVAGIALGIAAACAMFVFNYSRISAVSREFDARACHSNVERSIEDTAWLREHGDAVVGVCLQGFLFFGTANLVLRRLGKRLGNAAGSKQHYVMLDFRQVSGLDVSTSATFLRLKQRCAANGDTLVLTALPPRAHEMLARARVLTADVKTFSDLDTGLEWVEDRLLARTDRLAAQTVSHGLSAIQPHFTEAALAQLERCMQTRRLAQDEPLFARGDAGDAVYFIEAGRVTVSLPLANGQSMRLRSFGAGTVVGEMALYTQQTRSADVRADEPTVVRRLTFDALQRLESADADTARQFHRFVVKVLASRLAVTNEAVRAAR
>CP031466.1|AXL50486.1|2950057_2952271_-|hypothetical-protein
MKRNLLRWIASLAVLAVLLGHAAGFYRLLPVDVLDNLIYDARLRLTMPRTPDDRIVIVDIDERSLAEVGRWPWGRDRMAMLVDRLFGAGASVVGFDIVMAEPDRSSGLASLEQLAAGGMRGDARYRAVLDGLRGQLDFDGRFAAALGGRPVVLGYYMSGRGDAHGALPSPVLSAAVFAGHQGGVREAQGYAGNLPVFQQASTSAGFFNPVVDFDGNVRRVPLLIRHGDKVYESLSLAIVRLVLGEPVLVPDFGERGDKGDDPLDTLVLKTPRRTVRIPVDEHGAALVPYRGRDHSFPYVSAADVLTGKVPADLLAHRIVLVGTTAPGLLDMRSTPVGSVYPGVEIHANLVSGMLDGTLRHEPAYASAIQLVAMLVIGLLMIFGLPWQAPLRATAATIALLALATAGDFALWTYGGGVLPFAASILLIATLFVLNMSLGFFLESRHRRQFANLFGQYVPPELVEEMSREPGRYSMDGRRAELTVLFCDVRGFTTIAETLEPEDLARWMNEYLGAMTAVIRAQRGTLDKYIGDAIMAFWGAPVADPNHAQHAVLGALRMREALTLLNTALAQRGKPAIRVGIGINTGPMTVGDMGSDVRRAYTVMGDSVNLGARLEGISRHYGVDVVVGESTREQTEGIVYRELDRVRVKGKREAVAIYEPIAEADRLPAVLAWELGQWDEALRYYRSGDWDAAEALLRPLVGAAPGSGLYALYLERIATARERACIEAWDGIHDFDTK
>CP031466.1|AXL50485.1|2949272_2950043_-|3',5'-cyclic-nucleotide-phosphodiesterase
MMKLTVLGCSGGIGGDAHRTTALLVDDTVLIDAGTGVADLDVDALERIDHVFITHAHVDHIACLPLMLDTVGERRAKPLVVHCTVATEMILRAHLFNGALWPDFTRIPSRDRPFLRFAPLEEGESCAIGERIFRPLPAEHGVPAVGYHVATPRGSVVFGGDSTVCPAFWHAVAQIPDLRYLIVETAFPDAKRELAIQSKHLCPSLLASQLPRHASGFRLLISHVKPGHADETMRELQRAAGQHEPEMLARGQVYWI
>CP031466.1|AXL50484.1|2941765_2947015_-|outer-membrane-autotransporter-barrel-domain-protein
MRKSGHQPQPAARRLTAISLAVTAALAAMTPHGAKSQTVISGAQTTTQIWTSGDFTVSSGASIVVSGQTAVAAGGSSLGTFSNSGTISASGAYGFLNGGGIGTLSNSGAITAGNDGIHNNAGFTIDTLINGGTITGGVYGIVNESFGSIGSLTNSGTIIGVHAGIDNIGTIDALTNSGMIGAVGGNSAIHNSGGTIGSLSNSGTISASGYYGVLNDGAIGTLNNSGAITSSNDGIHNNSGGTIDTLINSGTITGSGYYGIVNENGGSIGTLTNSGSISGGTYGIDNFGSISTLTNSVSGSISGVSMGIVNSGSIDTFTNSGSISGNVYDIENYGVIGTFTNNGSINSGNSGILNVGSIGTFTNNGLINSAMTYMAIGNLGTISALTNNGSIGISDYGILNYNKIGTLTNIGVISGGGFGIVSDVGIDTLTNSGLISGYSAIFNLGTIGTLTNSGTISGSSAGIANYVSAAAGELGSIGTLTNSGTIIASGDYGILNDGTIGTLNNSGTITSSTDGIHNDSIGTIGTLINSGSISSVLNNGTIGGGNTGISNISGTIGSLGNAGTIIGVSVGLYNGGSIGTLDNGGTITGSAGLGIGNGGTITTLTNDTGGTITGYTAGIGNASTGSIGTLSNAGTIVGSAAGVANSGTITKLGNVGAINGGTYGIDNTGTVGTLSNSGTIGGGYGLYNAGSIGTLSNSGAISGTTTGIINWSSIDTLDNSGTIAGHTLMGITNGGTITTLTNDTGGSITGQTGVYNGGTGSIGTLTNNGTITGSFAGVQNSGGTITQLTNNGAIVGNVYGALNLGTITALNNAGTISGNSGINNGSTGSIGTLANSGTISGAGLGIVNMGSIGVLRNSGSLTGGLFNSGSIDTIQNSSGIDGQSGSGVGNFGSIGAIVNSGSIYGANGIDNGSTGSIGTLTNSGTITSIVDDGSIGTLTNSSTITGIVNGGSIGSLTNSGSWSMSGVVGGSIASLTNSGTIGGSAGTGIANSNGIIGTLSNSGVISGTTYGIQLTSLPAASKWGVGGASITSLINAAGGAIFGGQTGIYLDGTIGSLVNNGTISSPGNGLFNSSTGSIGTLTNGSTGVISGNTGINNQNAIGALTNDGTITGSNYAIYNGSTGAIGAFTNSGVIAGNIENDSANDLAINGGSGSTFGTLTGLGGAIGTITNTNSNVVFGSGNLLLNDHINVGGNTVVNNAATLQVNNAVTITGNYSQGSAATLLVGVASGAVTTGSLASDSGYGRLVVSGSATVASGSSITLLKTGSYAFAAGQRYVVIDAASSGTNYNAGTLNYSAVGFTGALSAATVTASGHSDLVVTLDSGTSTSGSGTSGSGTSTSGSDTSTSGSGTPTSGTTSTITSTPSAPKLATQPNAVSSLGGLLGYTGISTDLLNLYNAATALSVGTSAEANRAGAQLGPASQGAASSAATAPTFDVLTVIANRADSLRLGQAYGESGGQSGVSTGESAPDNAVWGQVLGGHASQGNAVEADGFSANYGGLLFGADRAINDRWRAGGAFSYTTSAINNTGDSAGDTTRVNAYGLIGYASYTAPTWYANLSAGAVLQHYDTTREVSFTGFSGTAQGRFDGQQYVARAEAGYPLVLGAYTLTPLSSLTYSYLRQNGYTESGGSGAALSVQASHATSVKSDLGAKLERGFATPYGVLVPDVGAAWRHEYVHGRQLTTSSFAADASGETTFTTTGASPVSDMAVVSAGVTLLRASNLTLTLRYELQAAPRYVSQTGSVRLRQLF
>CP031466.1|AXL50483.1|2939538_2941623_-|hypothetical-protein
MSSTANSDTLSIPEALNRAYAHWNAGQADQAEQYCQRVLAAWPGQADALHLLGLMAHAYGNLDLAIAHLREACKAPRAPAIYSSNLAEMCRQKGLLAEGEEAARRAVSMDANLVSGWNNLGVLLQEAGKLEQSLECLARVVTLTPDSPEAHNNLANTFRRLNRLDHAEAHYSRALALNPDYAEAHSNRAFLLTALGRRDEAAEAARRAIGLNPRLVDAYLNLADVEASRHRYGAALQALDALQSFAPQHPAGLNARAQTLKQLERNDEALHFAQQAVAVAAQSADAHNTLGQVLQALGRHDEALAAFEHAAALPGTVAEEALVGRATLFMETGRKDEAMAAFDRALAAFPGSMKVLGARADAKTFAHGDPDIEAMETALAEGDRRPVDERLAAHFALGKAYLDVGDAPRAFQHLDAANRQKRATFAYDTATAQRWLRQAADTFTPALIERFDAAGAPSELPVFIVGMPRSGTTLVEQILASHPQVHGAGELSTLRLIVEGSGTFPDFMQSVSREDLARLGRAYLARVTPLAQGKSRLVDKMPGNFFYSGLIPLILPGARIIHCRRDPVDTCLSCYTKQFAGEQPFAYDLTELGTFYRAYEKLMTHWRDVLPPAHFIEVDYEAVVDDLEGEARRMVDFLGLPWDDACLKFHENRRVVRTASVNQVRQPVYATSKGRWRRYADHLGPLLAALGIDA
>CP031466.1|AXL50482.1|2938381_2939542_-|glycosyl-transferase-family-8
MMNAPDIASIERQARALLANGRFAEAEAQVRPLLASGSGPLALWGVLADAIRPQGRIEETRAIQDMLVTHMPGNLTARFNLAETLLLLGDFERGWREYHHRYGMPHTTMIERKVQRPRWNGRPIPGKTLLIHDEQGYGDTFQFLRMVAWAKARSQARVVLEVNADSLSIAQRCNGFDDIIARGTLPPAFDMHCELMSLPMVMGLKLTDLPGNMPYLCADPHRIEKWRTRLAGLPRPLVALVWAGRPTHVNDANRSMALADLAPLAMPGVTFLSIQKGPAAAQAATPPAGMSLVSLSDEIEDFEDTAAILSVADLLISVDSSPVHLAGALGRPAWVMLPFVPDWRWLLERTDSPWYPGMRLFRQPAHGDWQSVMAAIATHLASLRGP
>CP031466.1|AXL50481.1|2937473_2938385_-|esterase
MTMVRRTSESKGMRARIAAAVLAMLLLPGAMTGCTGLDPNVHADSLAASAGLIREQVDAGGFVLTAFARISRPDQPLTVYIEGDGYAWMSRSMPSPDPTPHQAMGLALAAADGSANVVYLARPCQFTPMSLNPRCGIPYWTGKRFAPEVVASLNGAVDRFLARLNPQPGQRAHRLNLVGYSGGGALAVLVAARRTDVVSIRTVAGNLDDEYVNRLHGVSPMPESENAIDVAARVAAIAQIHFTGADDTVVPPEVAQRFVEREGAQCAQVRTVPGVGHDGDWAARWPALLAIRPTCVERSMGAT
>CP031466.1|AXL50480.1|2934901_2936731_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGAVAQRNILPNLVDGLKRLEYRGYDSCGVALYQDRQLVRSRSVERVANLQDEITRLGLSGYTGIAHTRWATHGKPVTANAHPHFSPGADAPRIALSHNGIIENHEALRATLEARGYVFASQTDSEVIAHLIDHLYNGDLFEAVKDAVGQLRGSYAIAVICRDEPHRLVGARDGMPLVVGVGEGENFLASDAIALSNVTDQIVYLENGDLVDVQLHRYWIVDGGGQRVERRVHTVAAHSGAADLGLYRYYMQKEIFEQPRAVADTLQDVTSIMPELFGDNAWRVLNAVDSVLLLACGGSFHAALTAKYWIESLAQLPVNVEIASEYRYRDSVPNPNTLVVAVSQSGETADVLGAVQVAKQYGMHHTLAICNVPTSALARECSLTFFTRAGIEIGVASTKAFTTQLVALFLLALTLAQSRQCLSEQDEQHHLRALRHLPDAMTKVLAMEPQIIAWAEQLTRRQDILFLGRGMHYPVAMEGALKMKEISYIHAEAYAAGELKHGPLALVSDEMPVVAVAPNDRLLEKLKSNMHEVSARNGKLYVFADIDCGISAGPDVEVIRLTEYYGLLSPILHTIPMQLLAFHAALARGTDIDKPRNLAKSVTVE
>CP031466.1|AXL50479.1|2932747_2933497_-|nicotinamidase
MAENHRRALIKSTAVLGLAHLCGLGSLSVLAASAVSGKHIKPGSKSALIVVDVQNCFIDGGTLPVKGGAEVVPVINELAGRFENIVITQDWHTAGHASFASSHPGKKPFETAQLSYGTQVLWPDHCVQGTDDAALDKDLKLPTAQIIIRKGFHKDMDSYSAFEEADHKTETGLSGYLKQRRIDTVFVTGLATDFCVAWTAMDARKAGFEAYVIEDATRPIDLNGSLAAARKNMDRAGVKRIQSKDILST
>CP031466.1|AXL50489.1|2965528_2966167_+|DNA-binding-response-regulator
MQSTRTGQQPFFIHVAIVEHDAGFVDALTQAVNGAPGMRLTGVAGTRAEGLALLEDPPADVLLVDLRLPDGPGIDVIHTAARQWALCNIMVSTNFGDEAHVMRSIEAGATGYLLKDSSPTKMVEEICSLASGGSPISPIVARQILARVRQGGAESGGRNAGFVPLLSASEVEVLDQITKGFQTQEIAERMRLSPFTVKTVVRRIYGKLRVAS
>CP031466.1|AXL50490.1|2966618_2967365_+|DNA-binding-response-regulator
MPSPHAAANQSVPHEQGALSIRVAIVEDDPGFLGTLSQAVSAAPDMCLTGIAGSRAEGLALLEGPPADVLLVDLGLPDGSGIDVIQATARQWTACNIMVSTSFTDEAHVVRSIEAGAAGYLLKDSPPARIVDEIRSVAGGGSPISPIIARQILARFRQGDTASPRADTAAHAGVESEPPAAASPLLSARETEVLVLITKGFTAQEIAKLMQLSHFTVRTFVRRIYGKLKVTSKAEAIYEARTLGLLSD
>CP031466.1|AXL50491.1|2969955_2971056_-|threonine-aldolase
MDSSDRPQGARAPALGFTSDNIAGASPEVVEAIAASSAGQASPYGADDLTARVERKLSEIFEREVDVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPASFTNGAKLVAVDGQFARMSPASLRSAARVKVGDVHSTQPSCASITQATEEGGVYTLDEIGALAEVCKASSIKLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVFAAEAIVLFDASLAPEMGYRRKRAGHLFSKMRFLSAQIDAYLSDDLWLRNARQANDAAQRLSRGLAGLGGLGGVEVLGATEANIVFCRLPATAIQALLQAGFGFYHDRWEQNVVRFVTSFSTTIEDVDNLLAHVTRAVVAHQSGNR
>CP031466.1|AXL50492.1|2972810_2974793_-|beta-galactosidase
MKVGVDYYPEHWDSTIWEEDAQRMQGGGITLVRLAEFAWSRLEPKEGEFDFAWLDAAIDTLGRYGIQVVIGTPTATPPNWLVAKCPDILPLDSKRQPMYPGVRLHRCYNSPSLRRYTQIIVEKLTRHYGRNPHVIGWQTDNEMIGNDSHSDAANSDFRLWVQRKYGDLDTLNREWGTVVWSGEYSDWSQITTPLGGSPYLNPSYLLDYHRFCSDSVADFNRFQARLIRENCSGQFITHNLWGYPVVNDYYDLFDSMDFASVDYYPSTDLANDSKARVYHGALTLDLTRGIKQKNFWVMEQLSGTPGCWHPMSRMPYPGMIRAHAWQSVARGADTIVQFRWRTARIGAEQFWHGLHDHHGKPGRRFEEFVRFSEEVRRLSPLLDGTSVINDVAMLFSHEQLNALKIQPQADGFDYLANFKQLHRAFLRLGIGTDVINWTSDIDRYRLVVAPFLFLENEAVVEKLRNYVAQGGTVIFTTRSGVKNMNNVCLPTSLPGALTDVVGAVVDEYDPVGNDRQGLILHGKLDTTCSQWCDILSPTTAETIAVYSTDFFAQRAAITRNAYGRGTAYYIGSVLDDHGYRTLIGDIAADLDLAVFNNLPAGVELSVRSGNGKRLLFVLNLTNNANEVQLPVADARSALTGHSIAQPFVLEPMGVEVLLLE
>CP031466.1|AXL50493.1|2974863_2975715_-|sugar-ABC-transporter-permease
MYPLPIAHWKPANRTFYKVSLPIALAVWLLPLLAVLVTSIRSSDELLQGNYWGWPHQFAALTNYRTVLVDSPMLHYAWNSCLITFPSVIGAIVLSAMAGFALATYPFKGNAAVLATFVAGNFVPIQVLMIPVRDLTLKLGLFNSVGGLILFHLSFQTGFCTLFLRNFIKELPYELVEAARVEGASEWQLFYRIVLPLIRPALAALAVLVFTFVWNDYFWALCLTQGDHAAPLTVGVAALQGQWTTAWNLVSAGSLLAALPSVLIFFAMQRHFVAGLTFGATKG
>CP031466.1|AXL50494.1|2975729_2976605_-|sugar-ABC-transporter-permease
MSASNVASPLARRRRRAALLFLAPACLMFTAYVIYPIVRSVLLSFYNWDGVGPSSFVGLANYRELFHSDTFYTALGNNLLWLALTLLAPPAGLAFALYLNQAMRGIRLAKSLFFAPFVIPGVVVGLVFSWFYDPAFGLLKVLVGHGIPVLGNEHMATFGIIAAALWVQIPFCMILFLTGLTGINPEVIEAGRLEGARGWSLLWHVVLPQLRPATFMAVTLTIIGALRSFDLISVMTGGGPFDSSTVLAYFMYDQAIKYFRYGYSAAIAVVLFLIMLVFIAYQLRRLLRTDH
>CP031466.1|AXL50495.1|2976697_2977927_-|extracellular-solute-binding-protein
MKQGFRLSLLGAALVFAAQVHAGTLTVNIAFKGANQRAFWDTAIAEFEKANPDVNVKAAFIEEEAYKVQLPGWLISEAPDIVKWHEGERMRYYVERGLLEDLSGDWQKNGWNASLASLKEPSSYGSKQYALPTDYFSWGMFYRKDLFDKVGIKGEPRTWDEFLDACKKLKAAGIAPIAVGGRDSWTLAAWFDYIDLRLNGYAFHMQLMNGKVPYTDARVKKVYEAWKVLIDNKYFVDNPLAYTLDSSQPLLIQGQAAMMLMGSFIAGALPDTVKPKVGYFQFPLMDPKIQVAEDGSADCLNIPVKAKNKVDARRFLAFMSKPEMDGRWAKAFGSLPANNQATVSDDPFTKTGFNILSNTKGGIAQFYDRDMTKEMADEGMKGMQRFISDPSTLDQVLAHLEETRTRIYK
>CP031466.1|AXL50496.1|2977947_2979090_-|sugar-ABC-transporter-ATP-binding-protein
MAAISLRGISKEFDGNPPVLRDVNLDIAEDEFCVFLGPSGCGKSTLLRIIAGLEDPSAGEISIGSRVVNTVPPARRGVAMVFQSYALFPHMTVAENMSFGLKLAKLPASEVDRKVREAARILQLEPLLDRKPAALSGGQRQRVAIGRAIVREPGVFLFDEPLSNLDATLRGQTRVEIARIHRRFSTASMVYVTHDQVEAMTLADKIVLLNVSRDAAGSGSIAQIGTPMDLYLRPNSRFVAGFIGSPQMNFLPASVSHVDGSSVTVILNSSQEPVRVGSVARRLEPGQPVTLGVRPEHVSVTHTEPASPEKTSAAHLTRPVSLIERLGEQSYLHCNDPDGATLLVKVQGNTPVRVGETVRLAIDPASCHLFNQDGLAVCAA
>CP031466.1|AXL50497.1|2979352_2980369_+|LacI-family-transcriptional-regulator
MATIKEVAALAGVTPTTVSNVLRGRGRVGTETRERVLEAVAAKGYRPNLNARALVERRAPTLALMLGCITNPFYPEFTLQANNAARRHGRFLLVCNTDYEPDGGTGFLADVAGSLSDGILVANNGDLHIDELTAIQAAGTPVVISIWESPDISPGIPCVAFDSHKAGFIATEHLLDLGHHRIGALIGSAKNGIHGGRYRGFHDALRSRKVKHIQADARFVTDSYQGGFDAAVDLLKARPDLTALFVSNDLPALGALNAAATLGLRVPEDISIVSITNIELASQSRPALTTVAIPTAEMAEQSIDLLIKLGAGEMDVPAMIRTADPVLVRRASTAPVKK
>CP031466.1|AXL50498.1|2980408_2980954_-|polyketide-cyclase
MKKRTRYLTAILAVLVTIALLFVPLPQRVLIDTRVSTVALIQRPPEIVFDYVTTPAHWPVWHPSSLAVNGAVDHPLDLGEQVTEQFRVAGRRGSVVWTVTAREPPRKWTIEGKIAGNPAGAVTYSLTSTASGTHFERVFTYRAPSLWFAILNWLVLRARIQDESDQAVLRLKNVLETVTQN

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Crispr_ID: CP031466_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031466_9

2964308-2964610

Orphan

Consensus_repeat	Method
GATGGTGCCGCTGTTGGTCAGCA	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP031466_9

>merge|CP031466|9|2964308-2964610|CRISPRCasFinder
GCCACTGCCGGTGTTGGTCAGCGTTTCCATCGTGCCGGTGTTGTAGACACCGGCGATGCCGCCACTGATCGCGCCGCTGTTGCTCAACAGACTCATCGCGCCGCCGACGTAGACACCGCCGCCCGACGTACCGGTGATCGTGCCGCTGTTGCTCAGCGTACCGATCGAGCCCATGTTGTTGATGCCGGAATAGCCGCCGGTGATGGTGCCGCTGTTGGTCAGCATACCGATCGTGCCGCTGTTGCTGACGCCATTACCCGTGGTAGTGGACGTGACGTCGATGGTGCCGCTGTTGGTCAGCAC

>CP031466|9|8|2964308-2964610|CRISPRCasFinder
GCCACTGCCGGTGTTGGTCAGCG	TTTCCATCGTGCCGGTGTTGTAGACACCGGCGATGCCGCCACT
GATCGCGCCGCTGTTGCTCAACA	GACTCATCGCGCCGCCGACGTAGACACCGCCGCCCGACGTACCGGT
GATCGTGCCGCTGTTGCTCAGCG	TACCGATCGAGCCCATGTTGTTGATGCCGGAATAGCCGCCGGT
GATGGTGCCGCTGTTGGTCAGCA	TACCGATCGTGCCGCTGTTGCTGACGCCATTACCCGTGGTAGTGGACGTGACGTC
GATGGTGCCGCTGTTGGTCAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031466.1\|AXL50493.1\|2974863_2975715_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP031466.1\|AXL50498.1\|2980408_2980954_-\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|378454
CP031466.1\|AXL50496.1\|2977947_2979090_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
CP031466.1\|AXL50495.1\|2976697_2977927_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270452
CP031466.1\|AXL50484.1\|2941765_2947015_-\|outer-membrane-autotransporter-barrel-domain-protein	unknown	unknown	gnl\|CDD\|226973
CP031466.1\|AXL50482.1\|2938381_2939542_-\|glycosyl-transferase-family-8	unknown	unknown	gnl\|CDD\|223928
CP031466.1\|AXL50486.1\|2950057_2952271_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215016
CP031466.1\|AXL50487.1\|2952279_2954496_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223732
CP031466.1\|AXL50492.1\|2972810_2974793_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
CP031466.1\|AXL50497.1\|2979352_2980369_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP031466.1\|AXL50491.1\|2969955_2971056_-\|threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
CP031466.1\|AXL50479.1\|2932747_2933497_-\|nicotinamidase	unknown	unknown	gnl\|CDD\|238493
CP031466.1\|AXL50485.1\|2949272_2950043_-\|3',5'-cyclic-nucleotide-phosphodiesterase	unknown	unknown	gnl\|CDD\|293821
CP031466.1\|AXL50494.1\|2975729_2976605_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP031466.1\|AXL50483.1\|2939538_2941623_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379204
CP031466.1\|AXL50488.1\|2955172_2956939_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225387
CP031466.1\|AXL50480.1\|2934901_2936731_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP031466.1\|AXL50481.1\|2937473_2938385_-\|esterase	unknown	unknown	gnl\|CDD\|366780
CP031466.1\|AXL50490.1\|2966618_2967365_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP031466.1\|AXL50489.1\|2965528_2966167_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
CP031466.1\|AXL50493.1\|2974863_2975715_-\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.99085e-77
CP031466.1\|AXL50498.1\|2980408_2980954_-\|polyketide-cyclase	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	6.70834e-14
CP031466.1\|AXL50496.1\|2977947_2979090_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	5.30722e-176
CP031466.1\|AXL50495.1\|2976697_2977927_-\|extracellular-solute-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.12872e-52
CP031466.1\|AXL50484.1\|2941765_2947015_-\|outer-membrane-autotransporter-barrel-domain-protein	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	2.31626e-50
CP031466.1\|AXL50482.1\|2938381_2939542_-\|glycosyl-transferase-family-8	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	2.3509e-06
CP031466.1\|AXL50486.1\|2950057_2952271_-\|hypothetical-protein	gnl\|CDD\|215016	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time.	9.91688e-73
CP031466.1\|AXL50487.1\|2952279_2954496_-\|hypothetical-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.19804e-52
CP031466.1\|AXL50492.1\|2972810_2974793_-\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	1.71681e-154
CP031466.1\|AXL50497.1\|2979352_2980369_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.34474e-92
CP031466.1\|AXL50491.1\|2969955_2971056_-\|threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	1.14723e-135
CP031466.1\|AXL50479.1\|2932747_2933497_-\|nicotinamidase	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	8.55108e-93
CP031466.1\|AXL50485.1\|2949272_2950043_-\|3',5'-cyclic-nucleotide-phosphodiesterase	gnl\|CDD\|293821	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain. Cyclic nucleotide phosphodiesterases (PDEs) decompose the second messengers cyclic adenosine and guanosine 3',5'-monophosphate (cAMP and cGMP, respectively). Saccharomyces cerevisiae PDE1 and Dictyostelium discoideum PDE1 and PDE7, have dual cAMP/cGMP specificity. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.49781e-72
CP031466.1\|AXL50494.1\|2975729_2976605_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.51735e-79
CP031466.1\|AXL50483.1\|2939538_2941623_-\|hypothetical-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.53762e-48
CP031466.1\|AXL50488.1\|2955172_2956939_-\|hypothetical-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	2.22844e-93
CP031466.1\|AXL50480.1\|2934901_2936731_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP031466.1\|AXL50481.1\|2937473_2938385_-\|esterase	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	0.000145195
CP031466.1\|AXL50490.1\|2966618_2967365_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.56312e-57
CP031466.1\|AXL50489.1\|2965528_2966167_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.44004e-46

>CP031466.1|AXL50488.1|2955172_2956939_-|hypothetical-protein
MARVRGVRTVSAPMAVRFMKPRRSVLLHVVAGLGTVLGCAIPEASAQLATPVPNLPNVPNAGSTLRDQLQSLPPPALPASNAEIHIESPAGAGPSASTLRFAVKGFQMDGNTKFSTAALMPLLAPALGDARTLGDLDEAAARITDFYRAHGYLVARAYVPAQDIRDGMVGIAIVEGRYGKVELHNGSPVRDAVLQRYASSAHLGEVVDERRLDRVALLMQDATGASAVTGNLQAGDTPGTSDLALDVPPTRALAFSVQGDNYGIRPTGRDRIGGSLQWLSPLGFGDRLDARALTSVTGQTFGQLGYSAPIGSDGLRTGISLVESTYRLGADFASLDAYGHATVLSWTTSYPLIRSRTVNLNAEGGFDRKSLTDHASGTVDNKFDNVYVAGVNGNVLLGKTFASYALRMEAGDVHFESADALATDQSSAQSAGHYRKATYSFALYEAFTSKLQLYLALSGQQASKNLISSEKFSLGGPYGVRAYPTGEAPGDEGYLATAELRYALAQSVVPGQLGVYGFVDTGFVRDNVYPFTTDPNHRRLSGVGVGITLSGAPSYEVRLVYAHKLGNAAAVADTDHAGRVWLQLTKAF
>CP031466.1|AXL50487.1|2952279_2954496_-|hypothetical-protein
MTDKTFAFRTSPRDSGTGTPVTANVVAGLLSGFVSLCYSIAYGSLIFSGSLAHFVSVGILVTLVSGGVIALVVAVKSSLPFSIGGPDSNAVAVLVGLAGSVAADASATGLPPDGVLFTVLAAIAVSSIVTGTLLYLVGVSRRSSMIQFLPFPVVGGFLGGSGYLLLSGAMRTLTGHSLGWSALAALPDLPWLAWLPALVVCGTLLAAQGRVKPYALTPLGLGAGVVVFFAGMLAMGQTAEQWRAAGLLFDRESLSSLQLPLMLPRHQIDWTTIVTHLPECLAVAAVSALTILLNASGASVATGFDADFNQEMRAAGLANLLAGVTGGVIGYQSMTRTLLNRRAGATARLSGIVAGASCFAVIGLVPGVIAWLPKPVLVGLQLYLSWGILREWLIASYRKLGLADYLLVLLIVGVIAVEGVVAGIALGIAAACAMFVFNYSRISAVSREFDARACHSNVERSIEDTAWLREHGDAVVGVCLQGFLFFGTANLVLRRLGKRLGNAAGSKQHYVMLDFRQVSGLDVSTSATFLRLKQRCAANGDTLVLTALPPRAHEMLARARVLTADVKTFSDLDTGLEWVEDRLLARTDRLAAQTVSHGLSAIQPHFTEAALAQLERCMQTRRLAQDEPLFARGDAGDAVYFIEAGRVTVSLPLANGQSMRLRSFGAGTVVGEMALYTQQTRSADVRADEPTVVRRLTFDALQRLESADADTARQFHRFVVKVLASRLAVTNEAVRAAR
>CP031466.1|AXL50486.1|2950057_2952271_-|hypothetical-protein
MKRNLLRWIASLAVLAVLLGHAAGFYRLLPVDVLDNLIYDARLRLTMPRTPDDRIVIVDIDERSLAEVGRWPWGRDRMAMLVDRLFGAGASVVGFDIVMAEPDRSSGLASLEQLAAGGMRGDARYRAVLDGLRGQLDFDGRFAAALGGRPVVLGYYMSGRGDAHGALPSPVLSAAVFAGHQGGVREAQGYAGNLPVFQQASTSAGFFNPVVDFDGNVRRVPLLIRHGDKVYESLSLAIVRLVLGEPVLVPDFGERGDKGDDPLDTLVLKTPRRTVRIPVDEHGAALVPYRGRDHSFPYVSAADVLTGKVPADLLAHRIVLVGTTAPGLLDMRSTPVGSVYPGVEIHANLVSGMLDGTLRHEPAYASAIQLVAMLVIGLLMIFGLPWQAPLRATAATIALLALATAGDFALWTYGGGVLPFAASILLIATLFVLNMSLGFFLESRHRRQFANLFGQYVPPELVEEMSREPGRYSMDGRRAELTVLFCDVRGFTTIAETLEPEDLARWMNEYLGAMTAVIRAQRGTLDKYIGDAIMAFWGAPVADPNHAQHAVLGALRMREALTLLNTALAQRGKPAIRVGIGINTGPMTVGDMGSDVRRAYTVMGDSVNLGARLEGISRHYGVDVVVGESTREQTEGIVYRELDRVRVKGKREAVAIYEPIAEADRLPAVLAWELGQWDEALRYYRSGDWDAAEALLRPLVGAAPGSGLYALYLERIATARERACIEAWDGIHDFDTK
>CP031466.1|AXL50485.1|2949272_2950043_-|3',5'-cyclic-nucleotide-phosphodiesterase
MMKLTVLGCSGGIGGDAHRTTALLVDDTVLIDAGTGVADLDVDALERIDHVFITHAHVDHIACLPLMLDTVGERRAKPLVVHCTVATEMILRAHLFNGALWPDFTRIPSRDRPFLRFAPLEEGESCAIGERIFRPLPAEHGVPAVGYHVATPRGSVVFGGDSTVCPAFWHAVAQIPDLRYLIVETAFPDAKRELAIQSKHLCPSLLASQLPRHASGFRLLISHVKPGHADETMRELQRAAGQHEPEMLARGQVYWI
>CP031466.1|AXL50484.1|2941765_2947015_-|outer-membrane-autotransporter-barrel-domain-protein
MRKSGHQPQPAARRLTAISLAVTAALAAMTPHGAKSQTVISGAQTTTQIWTSGDFTVSSGASIVVSGQTAVAAGGSSLGTFSNSGTISASGAYGFLNGGGIGTLSNSGAITAGNDGIHNNAGFTIDTLINGGTITGGVYGIVNESFGSIGSLTNSGTIIGVHAGIDNIGTIDALTNSGMIGAVGGNSAIHNSGGTIGSLSNSGTISASGYYGVLNDGAIGTLNNSGAITSSNDGIHNNSGGTIDTLINSGTITGSGYYGIVNENGGSIGTLTNSGSISGGTYGIDNFGSISTLTNSVSGSISGVSMGIVNSGSIDTFTNSGSISGNVYDIENYGVIGTFTNNGSINSGNSGILNVGSIGTFTNNGLINSAMTYMAIGNLGTISALTNNGSIGISDYGILNYNKIGTLTNIGVISGGGFGIVSDVGIDTLTNSGLISGYSAIFNLGTIGTLTNSGTISGSSAGIANYVSAAAGELGSIGTLTNSGTIIASGDYGILNDGTIGTLNNSGTITSSTDGIHNDSIGTIGTLINSGSISSVLNNGTIGGGNTGISNISGTIGSLGNAGTIIGVSVGLYNGGSIGTLDNGGTITGSAGLGIGNGGTITTLTNDTGGTITGYTAGIGNASTGSIGTLSNAGTIVGSAAGVANSGTITKLGNVGAINGGTYGIDNTGTVGTLSNSGTIGGGYGLYNAGSIGTLSNSGAISGTTTGIINWSSIDTLDNSGTIAGHTLMGITNGGTITTLTNDTGGSITGQTGVYNGGTGSIGTLTNNGTITGSFAGVQNSGGTITQLTNNGAIVGNVYGALNLGTITALNNAGTISGNSGINNGSTGSIGTLANSGTISGAGLGIVNMGSIGVLRNSGSLTGGLFNSGSIDTIQNSSGIDGQSGSGVGNFGSIGAIVNSGSIYGANGIDNGSTGSIGTLTNSGTITSIVDDGSIGTLTNSSTITGIVNGGSIGSLTNSGSWSMSGVVGGSIASLTNSGTIGGSAGTGIANSNGIIGTLSNSGVISGTTYGIQLTSLPAASKWGVGGASITSLINAAGGAIFGGQTGIYLDGTIGSLVNNGTISSPGNGLFNSSTGSIGTLTNGSTGVISGNTGINNQNAIGALTNDGTITGSNYAIYNGSTGAIGAFTNSGVIAGNIENDSANDLAINGGSGSTFGTLTGLGGAIGTITNTNSNVVFGSGNLLLNDHINVGGNTVVNNAATLQVNNAVTITGNYSQGSAATLLVGVASGAVTTGSLASDSGYGRLVVSGSATVASGSSITLLKTGSYAFAAGQRYVVIDAASSGTNYNAGTLNYSAVGFTGALSAATVTASGHSDLVVTLDSGTSTSGSGTSGSGTSTSGSDTSTSGSGTPTSGTTSTITSTPSAPKLATQPNAVSSLGGLLGYTGISTDLLNLYNAATALSVGTSAEANRAGAQLGPASQGAASSAATAPTFDVLTVIANRADSLRLGQAYGESGGQSGVSTGESAPDNAVWGQVLGGHASQGNAVEADGFSANYGGLLFGADRAINDRWRAGGAFSYTTSAINNTGDSAGDTTRVNAYGLIGYASYTAPTWYANLSAGAVLQHYDTTREVSFTGFSGTAQGRFDGQQYVARAEAGYPLVLGAYTLTPLSSLTYSYLRQNGYTESGGSGAALSVQASHATSVKSDLGAKLERGFATPYGVLVPDVGAAWRHEYVHGRQLTTSSFAADASGETTFTTTGASPVSDMAVVSAGVTLLRASNLTLTLRYELQAAPRYVSQTGSVRLRQLF
>CP031466.1|AXL50483.1|2939538_2941623_-|hypothetical-protein
MSSTANSDTLSIPEALNRAYAHWNAGQADQAEQYCQRVLAAWPGQADALHLLGLMAHAYGNLDLAIAHLREACKAPRAPAIYSSNLAEMCRQKGLLAEGEEAARRAVSMDANLVSGWNNLGVLLQEAGKLEQSLECLARVVTLTPDSPEAHNNLANTFRRLNRLDHAEAHYSRALALNPDYAEAHSNRAFLLTALGRRDEAAEAARRAIGLNPRLVDAYLNLADVEASRHRYGAALQALDALQSFAPQHPAGLNARAQTLKQLERNDEALHFAQQAVAVAAQSADAHNTLGQVLQALGRHDEALAAFEHAAALPGTVAEEALVGRATLFMETGRKDEAMAAFDRALAAFPGSMKVLGARADAKTFAHGDPDIEAMETALAEGDRRPVDERLAAHFALGKAYLDVGDAPRAFQHLDAANRQKRATFAYDTATAQRWLRQAADTFTPALIERFDAAGAPSELPVFIVGMPRSGTTLVEQILASHPQVHGAGELSTLRLIVEGSGTFPDFMQSVSREDLARLGRAYLARVTPLAQGKSRLVDKMPGNFFYSGLIPLILPGARIIHCRRDPVDTCLSCYTKQFAGEQPFAYDLTELGTFYRAYEKLMTHWRDVLPPAHFIEVDYEAVVDDLEGEARRMVDFLGLPWDDACLKFHENRRVVRTASVNQVRQPVYATSKGRWRRYADHLGPLLAALGIDA
>CP031466.1|AXL50482.1|2938381_2939542_-|glycosyl-transferase-family-8
MMNAPDIASIERQARALLANGRFAEAEAQVRPLLASGSGPLALWGVLADAIRPQGRIEETRAIQDMLVTHMPGNLTARFNLAETLLLLGDFERGWREYHHRYGMPHTTMIERKVQRPRWNGRPIPGKTLLIHDEQGYGDTFQFLRMVAWAKARSQARVVLEVNADSLSIAQRCNGFDDIIARGTLPPAFDMHCELMSLPMVMGLKLTDLPGNMPYLCADPHRIEKWRTRLAGLPRPLVALVWAGRPTHVNDANRSMALADLAPLAMPGVTFLSIQKGPAAAQAATPPAGMSLVSLSDEIEDFEDTAAILSVADLLISVDSSPVHLAGALGRPAWVMLPFVPDWRWLLERTDSPWYPGMRLFRQPAHGDWQSVMAAIATHLASLRGP
>CP031466.1|AXL50481.1|2937473_2938385_-|esterase
MTMVRRTSESKGMRARIAAAVLAMLLLPGAMTGCTGLDPNVHADSLAASAGLIREQVDAGGFVLTAFARISRPDQPLTVYIEGDGYAWMSRSMPSPDPTPHQAMGLALAAADGSANVVYLARPCQFTPMSLNPRCGIPYWTGKRFAPEVVASLNGAVDRFLARLNPQPGQRAHRLNLVGYSGGGALAVLVAARRTDVVSIRTVAGNLDDEYVNRLHGVSPMPESENAIDVAARVAAIAQIHFTGADDTVVPPEVAQRFVEREGAQCAQVRTVPGVGHDGDWAARWPALLAIRPTCVERSMGAT
>CP031466.1|AXL50480.1|2934901_2936731_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGAVAQRNILPNLVDGLKRLEYRGYDSCGVALYQDRQLVRSRSVERVANLQDEITRLGLSGYTGIAHTRWATHGKPVTANAHPHFSPGADAPRIALSHNGIIENHEALRATLEARGYVFASQTDSEVIAHLIDHLYNGDLFEAVKDAVGQLRGSYAIAVICRDEPHRLVGARDGMPLVVGVGEGENFLASDAIALSNVTDQIVYLENGDLVDVQLHRYWIVDGGGQRVERRVHTVAAHSGAADLGLYRYYMQKEIFEQPRAVADTLQDVTSIMPELFGDNAWRVLNAVDSVLLLACGGSFHAALTAKYWIESLAQLPVNVEIASEYRYRDSVPNPNTLVVAVSQSGETADVLGAVQVAKQYGMHHTLAICNVPTSALARECSLTFFTRAGIEIGVASTKAFTTQLVALFLLALTLAQSRQCLSEQDEQHHLRALRHLPDAMTKVLAMEPQIIAWAEQLTRRQDILFLGRGMHYPVAMEGALKMKEISYIHAEAYAAGELKHGPLALVSDEMPVVAVAPNDRLLEKLKSNMHEVSARNGKLYVFADIDCGISAGPDVEVIRLTEYYGLLSPILHTIPMQLLAFHAALARGTDIDKPRNLAKSVTVE
>CP031466.1|AXL50479.1|2932747_2933497_-|nicotinamidase
MAENHRRALIKSTAVLGLAHLCGLGSLSVLAASAVSGKHIKPGSKSALIVVDVQNCFIDGGTLPVKGGAEVVPVINELAGRFENIVITQDWHTAGHASFASSHPGKKPFETAQLSYGTQVLWPDHCVQGTDDAALDKDLKLPTAQIIIRKGFHKDMDSYSAFEEADHKTETGLSGYLKQRRIDTVFVTGLATDFCVAWTAMDARKAGFEAYVIEDATRPIDLNGSLAAARKNMDRAGVKRIQSKDILST
>CP031466.1|AXL50489.1|2965528_2966167_+|DNA-binding-response-regulator
MQSTRTGQQPFFIHVAIVEHDAGFVDALTQAVNGAPGMRLTGVAGTRAEGLALLEDPPADVLLVDLRLPDGPGIDVIHTAARQWALCNIMVSTNFGDEAHVMRSIEAGATGYLLKDSSPTKMVEEICSLASGGSPISPIVARQILARVRQGGAESGGRNAGFVPLLSASEVEVLDQITKGFQTQEIAERMRLSPFTVKTVVRRIYGKLRVAS
>CP031466.1|AXL50490.1|2966618_2967365_+|DNA-binding-response-regulator
MPSPHAAANQSVPHEQGALSIRVAIVEDDPGFLGTLSQAVSAAPDMCLTGIAGSRAEGLALLEGPPADVLLVDLGLPDGSGIDVIQATARQWTACNIMVSTSFTDEAHVVRSIEAGAAGYLLKDSPPARIVDEIRSVAGGGSPISPIIARQILARFRQGDTASPRADTAAHAGVESEPPAAASPLLSARETEVLVLITKGFTAQEIAKLMQLSHFTVRTFVRRIYGKLKVTSKAEAIYEARTLGLLSD
>CP031466.1|AXL50491.1|2969955_2971056_-|threonine-aldolase
MDSSDRPQGARAPALGFTSDNIAGASPEVVEAIAASSAGQASPYGADDLTARVERKLSEIFEREVDVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPASFTNGAKLVAVDGQFARMSPASLRSAARVKVGDVHSTQPSCASITQATEEGGVYTLDEIGALAEVCKASSIKLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVFAAEAIVLFDASLAPEMGYRRKRAGHLFSKMRFLSAQIDAYLSDDLWLRNARQANDAAQRLSRGLAGLGGLGGVEVLGATEANIVFCRLPATAIQALLQAGFGFYHDRWEQNVVRFVTSFSTTIEDVDNLLAHVTRAVVAHQSGNR
>CP031466.1|AXL50492.1|2972810_2974793_-|beta-galactosidase
MKVGVDYYPEHWDSTIWEEDAQRMQGGGITLVRLAEFAWSRLEPKEGEFDFAWLDAAIDTLGRYGIQVVIGTPTATPPNWLVAKCPDILPLDSKRQPMYPGVRLHRCYNSPSLRRYTQIIVEKLTRHYGRNPHVIGWQTDNEMIGNDSHSDAANSDFRLWVQRKYGDLDTLNREWGTVVWSGEYSDWSQITTPLGGSPYLNPSYLLDYHRFCSDSVADFNRFQARLIRENCSGQFITHNLWGYPVVNDYYDLFDSMDFASVDYYPSTDLANDSKARVYHGALTLDLTRGIKQKNFWVMEQLSGTPGCWHPMSRMPYPGMIRAHAWQSVARGADTIVQFRWRTARIGAEQFWHGLHDHHGKPGRRFEEFVRFSEEVRRLSPLLDGTSVINDVAMLFSHEQLNALKIQPQADGFDYLANFKQLHRAFLRLGIGTDVINWTSDIDRYRLVVAPFLFLENEAVVEKLRNYVAQGGTVIFTTRSGVKNMNNVCLPTSLPGALTDVVGAVVDEYDPVGNDRQGLILHGKLDTTCSQWCDILSPTTAETIAVYSTDFFAQRAAITRNAYGRGTAYYIGSVLDDHGYRTLIGDIAADLDLAVFNNLPAGVELSVRSGNGKRLLFVLNLTNNANEVQLPVADARSALTGHSIAQPFVLEPMGVEVLLLE
>CP031466.1|AXL50493.1|2974863_2975715_-|sugar-ABC-transporter-permease
MYPLPIAHWKPANRTFYKVSLPIALAVWLLPLLAVLVTSIRSSDELLQGNYWGWPHQFAALTNYRTVLVDSPMLHYAWNSCLITFPSVIGAIVLSAMAGFALATYPFKGNAAVLATFVAGNFVPIQVLMIPVRDLTLKLGLFNSVGGLILFHLSFQTGFCTLFLRNFIKELPYELVEAARVEGASEWQLFYRIVLPLIRPALAALAVLVFTFVWNDYFWALCLTQGDHAAPLTVGVAALQGQWTTAWNLVSAGSLLAALPSVLIFFAMQRHFVAGLTFGATKG
>CP031466.1|AXL50494.1|2975729_2976605_-|sugar-ABC-transporter-permease
MSASNVASPLARRRRRAALLFLAPACLMFTAYVIYPIVRSVLLSFYNWDGVGPSSFVGLANYRELFHSDTFYTALGNNLLWLALTLLAPPAGLAFALYLNQAMRGIRLAKSLFFAPFVIPGVVVGLVFSWFYDPAFGLLKVLVGHGIPVLGNEHMATFGIIAAALWVQIPFCMILFLTGLTGINPEVIEAGRLEGARGWSLLWHVVLPQLRPATFMAVTLTIIGALRSFDLISVMTGGGPFDSSTVLAYFMYDQAIKYFRYGYSAAIAVVLFLIMLVFIAYQLRRLLRTDH
>CP031466.1|AXL50495.1|2976697_2977927_-|extracellular-solute-binding-protein
MKQGFRLSLLGAALVFAAQVHAGTLTVNIAFKGANQRAFWDTAIAEFEKANPDVNVKAAFIEEEAYKVQLPGWLISEAPDIVKWHEGERMRYYVERGLLEDLSGDWQKNGWNASLASLKEPSSYGSKQYALPTDYFSWGMFYRKDLFDKVGIKGEPRTWDEFLDACKKLKAAGIAPIAVGGRDSWTLAAWFDYIDLRLNGYAFHMQLMNGKVPYTDARVKKVYEAWKVLIDNKYFVDNPLAYTLDSSQPLLIQGQAAMMLMGSFIAGALPDTVKPKVGYFQFPLMDPKIQVAEDGSADCLNIPVKAKNKVDARRFLAFMSKPEMDGRWAKAFGSLPANNQATVSDDPFTKTGFNILSNTKGGIAQFYDRDMTKEMADEGMKGMQRFISDPSTLDQVLAHLEETRTRIYK
>CP031466.1|AXL50496.1|2977947_2979090_-|sugar-ABC-transporter-ATP-binding-protein
MAAISLRGISKEFDGNPPVLRDVNLDIAEDEFCVFLGPSGCGKSTLLRIIAGLEDPSAGEISIGSRVVNTVPPARRGVAMVFQSYALFPHMTVAENMSFGLKLAKLPASEVDRKVREAARILQLEPLLDRKPAALSGGQRQRVAIGRAIVREPGVFLFDEPLSNLDATLRGQTRVEIARIHRRFSTASMVYVTHDQVEAMTLADKIVLLNVSRDAAGSGSIAQIGTPMDLYLRPNSRFVAGFIGSPQMNFLPASVSHVDGSSVTVILNSSQEPVRVGSVARRLEPGQPVTLGVRPEHVSVTHTEPASPEKTSAAHLTRPVSLIERLGEQSYLHCNDPDGATLLVKVQGNTPVRVGETVRLAIDPASCHLFNQDGLAVCAA
>CP031466.1|AXL50497.1|2979352_2980369_+|LacI-family-transcriptional-regulator
MATIKEVAALAGVTPTTVSNVLRGRGRVGTETRERVLEAVAAKGYRPNLNARALVERRAPTLALMLGCITNPFYPEFTLQANNAARRHGRFLLVCNTDYEPDGGTGFLADVAGSLSDGILVANNGDLHIDELTAIQAAGTPVVISIWESPDISPGIPCVAFDSHKAGFIATEHLLDLGHHRIGALIGSAKNGIHGGRYRGFHDALRSRKVKHIQADARFVTDSYQGGFDAAVDLLKARPDLTALFVSNDLPALGALNAAATLGLRVPEDISIVSITNIELASQSRPALTTVAIPTAEMAEQSIDLLIKLGAGEMDVPAMIRTADPVLVRRASTAPVKK
>CP031466.1|AXL50498.1|2980408_2980954_-|polyketide-cyclase
MKKRTRYLTAILAVLVTIALLFVPLPQRVLIDTRVSTVALIQRPPEIVFDYVTTPAHWPVWHPSSLAVNGAVDHPLDLGEQVTEQFRVAGRRGSVVWTVTAREPPRKWTIEGKIAGNPAGAVTYSLTSTASGTHFERVFTYRAPSLWFAILNWLVLRARIQDESDQAVLRLKNVLETVTQN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031466_3	3.1\|922151\|25\|CP031466\|CRISPRCasFinder	922151-922175	25	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	517266-517290	4	0.84
CP031466_6	6.1\|2900404\|27\|CP031466\|CRISPRCasFinder	2900404-2900430	27	NC_015685	Oligotropha carboxidovorans OM5 plasmid pOC167, complete sequence	48795-48821	5	0.815
CP031466_6	6.3\|2900542\|27\|CP031466\|CRISPRCasFinder	2900542-2900568	27	NC_041916	Vibrio phage pTD1 DNA, complete genome	152186-152212	5	0.815
CP031466_6	6.1\|2900404\|27\|CP031466\|CRISPRCasFinder	2900404-2900430	27	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	405285-405311	6	0.778
CP031466_6	6.3\|2900542\|27\|CP031466\|CRISPRCasFinder	2900542-2900568	27	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	1382291-1382317	6	0.778
CP031466_7	7.2\|2945952\|29\|CP031466\|PILER-CR	2945952-2945980	29	NZ_CP013632	Rhizobium sp. N324 plasmid pRspN324b, complete sequence	317884-317912	6	0.793
CP031466_6	6.2\|2900470\|33\|CP031466\|CRISPRCasFinder	2900470-2900502	33	MT657343	Microbacterium phage GaeCeo, complete genome	19041-19073	7	0.788
CP031466_6	6.2\|2900470\|33\|CP031466\|CRISPRCasFinder	2900470-2900502	33	MN310543	Microbacterium phage ChickenKing, complete genome	18868-18900	7	0.788
CP031466_6	6.3\|2900542\|27\|CP031466\|CRISPRCasFinder	2900542-2900568	27	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	303674-303700	7	0.741
CP031466_7	7.2\|2945952\|29\|CP031466\|PILER-CR	2945952-2945980	29	MK373793	Escherichia phage vB_EcoS_MM01, complete genome	42990-43018	7	0.759
CP031466_6	6.2\|2900470\|33\|CP031466\|CRISPRCasFinder	2900470-2900502	33	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	239837-239869	9	0.727
CP031466_6	6.2\|2900470\|33\|CP031466\|CRISPRCasFinder	2900470-2900502	33	NZ_CP032703	Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence	22102-22134	9	0.727
CP031466_7	7.1\|2945880\|35\|CP031466\|PILER-CR	2945880-2945914	35	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	452297-452331	10	0.714
CP031466_7	7.1\|2945880\|35\|CP031466\|PILER-CR	2945880-2945914	35	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	436539-436573	10	0.714
CP031466_7	7.1\|2945880\|35\|CP031466\|PILER-CR	2945880-2945914	35	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	436529-436563	10	0.714

1. spacer 3.1|922151|25|CP031466|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 4, identity: 0.84

gccgcagagcatcttcaatgacata	CRISPR spacer
gccgcagagcatcgtcaacgacagc	Protospacer
************* ****.****

2. spacer 6.1|2900404|27|CP031466|CRISPRCasFinder matches to NC_015685 (Oligotropha carboxidovorans OM5 plasmid pOC167, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaacgacaccttgagcaattacggc	CRISPR spacer
agcaacgacaccttgcgctattacgaa	Protospacer
.************** ** ******.

3. spacer 6.3|2900542|27|CP031466|CRISPRCasFinder matches to NC_041916 (Vibrio phage pTD1 DNA, complete genome) position: , mismatch: 5, identity: 0.815

ggtggttcattcaacctcttgaacctg	CRISPR spacer
cctcgttcattcaacatcttgaacttg	Protospacer
  * *********** ********.**

4. spacer 6.1|2900404|27|CP031466|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 6, identity: 0.778

ggcaacgacaccttgagcaattacggc	CRISPR spacer
attacggacaccttgaggaattacggc	Protospacer
. .*  *********** *********

5. spacer 6.3|2900542|27|CP031466|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

ggtggttcattcaacctcttgaacctg	CRISPR spacer
tttggctcactcaacctcttgaaccaa	Protospacer
  ***.***.*************** .

6. spacer 7.2|2945952|29|CP031466|PILER-CR matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 6, identity: 0.793

acgttc-aagatgccagaattgccgctgtt	CRISPR spacer
-cgcgcgaaggtgccagaattgccgctgcg	Protospacer
 **. * ***.*****************.

7. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to MT657343 (Microbacterium phage GaeCeo, complete genome) position: , mismatch: 7, identity: 0.788

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
gccagcggcggcacctacaccgtctccaagggc	Protospacer
******.************ *****..**   *

8. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to MN310543 (Microbacterium phage ChickenKing, complete genome) position: , mismatch: 7, identity: 0.788

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
gccagcggcggcacctacaccgtctccaagggc	Protospacer
******.************ *****..**   *

9. spacer 6.3|2900542|27|CP031466|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.741

ggtggttcattcaacctcttgaacctg	CRISPR spacer
aagtattcatacaacctcttgaaccta	Protospacer
..  .***** ***************.

10. spacer 7.2|2945952|29|CP031466|PILER-CR matches to MK373793 (Escherichia phage vB_EcoS_MM01, complete genome) position: , mismatch: 7, identity: 0.759

acgttcaagatgccagaattgccgctgtt	CRISPR spacer
caattccagatgccagaattgctgctgcg	Protospacer
  .*** ***************.****.

11. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 9, identity: 0.727

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
cccagcagcggcagcttcagcgtcttgccggtg	Protospacer
 ************ ** *********     *

12. spacer 6.2|2900470|33|CP031466|CRISPRCasFinder matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gccagcagcggcacctacagcgtctttaacctc	CRISPR spacer
gccagcagcgtcacctgcagcgtcagccacgcg	Protospacer
********** *****.*******  . ** .

13. spacer 7.1|2945880|35|CP031466|PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.714

aggttaccgatggccatgtacgtcatggcgctgtt	CRISPR spacer
gcttcggtgatggcgatgtgcgtcatggcgctgtc	Protospacer
.  *.. .****** ****.**************.

14. spacer 7.1|2945880|35|CP031466|PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

aggttaccgatggccatgtacgtcatggcgctgtt	CRISPR spacer
gcttcggtgatggcgatgtgcgtcatggcgctgtc	Protospacer
.  *.. .****** ****.**************.

15. spacer 7.1|2945880|35|CP031466|PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

aggttaccgatggccatgtacgtcatggcgctgtt	CRISPR spacer
gcttcggtgatggcgatgtgcgtcatggcgctgtc	Protospacer
.  *.. .****** ****.**************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

938076 : 949980

uncultured_Caudovirales_phage(54.55%)

portal,tail,plate,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL49171.1\|938076_939591_+\|portal	portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.9e-142	52.5
AXL49172.1\|939577_940717_+	peptidase S14	S5M7Q8	Escherichia_phage	8.8e-43	42.0
AXL49173.1\|940753_941095_+	hypothetical protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.5e-22	56.1
AXL49174.1\|941182_942178_+\|capsid	minor capsid protein E	A0A2H4J890	uncultured_Caudovirales_phage	3.2e-113	60.8
AXL49175.1\|942188_942485_+	hypothetical protein	NA	NA	NA	NA
AXL49176.1\|942498_943038_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	7.1e-11	27.1
AXL49177.1\|943559_944237_+\|plate	baseplate assembly protein	A0A2H4JG06	uncultured_Caudovirales_phage	1.9e-13	34.6
AXL49178.1\|945184_945529_+\|plate	phage baseplate protein	Q75QM0	Wolbachia_phage	7.2e-17	45.3
AXL49179.1\|946411_946975_+\|tail	phage tail protein	A4JWL7	Burkholderia_virus	1.3e-36	49.7
AXL49180.1\|946974_948264_+	hypothetical protein	Q6QI97	Burkholderia_phage	3.2e-41	35.0
AXL49181.1\|948267_948702_+\|tail	phage tail protein	A4JWL9	Burkholderia_virus	4.4e-11	40.2
AXL49182.1\|948810_949980_+\|tail	tail protein	A0A2H4J869	uncultured_Caudovirales_phage	7.9e-156	71.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031467

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP031467_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031467_1

3470174-3470286

Orphan

Consensus_repeat	Method
TTTGCATGGGACCAGAGTAAGCGCTAAAGCGCCAACTCT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP031467_1

>merge|CP031467|1|3470174-3470286|CRISPRCasFinder
TTTGCATGGGACCAGAGTAAGCGCTAAAGCGCCAACTCTGGTCGACCGCTAGTGCATGGGACCAGAGTAAGGGCTTTGCATGGGACTAGAGTAAGCGCTAAAGCGCCAACTCT

>CP031467|1|1|3470174-3470286|CRISPRCasFinder
TTTGCATGGGACCAGAGTAAGCGCTAAAGCGCCAACTCT	GGTCGACCGCTAGTGCATGGGACCAGAGTAAGGGC
TTTGCATGGGACTAGAGTAAGCGCTAAAGCGCCAACTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP031467.1\|AXL53255.1\|3455779_3456151_-\|cupin	unknown	unknown	gnl\|CDD\|380356
CP031467.1\|AXL53258.1\|3463216_3464470_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|340883
CP031467.1\|AXL53267.1\|3476665_3477904_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
CP031467.1\|AXL53262.1\|3468393_3469128_+\|thioredoxin	unknown	unknown	gnl\|CDD\|377584
CP031467.1\|AXL53268.1\|3477969_3479367_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|237030
CP031467.1\|AXL53265.1\|3471343_3472711_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
CP031467.1\|AXL53256.1\|3458602_3459583_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182077
CP031467.1\|AXL53273.1\|3486776_3488000_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
CP031467.1\|AXL53260.1\|3465954_3467337_+\|permease	unknown	unknown	gnl\|CDD\|225161
CP031467.1\|AXL53269.1\|3480824_3481721_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176167
CP031467.1\|AXL53261.1\|3467599_3468007_+\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
CP031467.1\|AXL53263.1\|3469189_3470035_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
CP031467.1\|AXL53257.1\|3459680_3460844_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
CP031467.1\|AXL53270.1\|3481982_3483506_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
CP031467.1\|AXL53272.1\|3484310_3485999_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
CP031467.1\|AXL53271.1\|3483542_3484238_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|188194
CP031467.1\|AXL53254.1\|3454237_3455629_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
CP031467.1\|AXL53259.1\|3464466_3465438_-\|photosystem-reaction-center-subunit-H	unknown	unknown	gnl\|CDD\|240289
CP031467.1\|AXL53266.1\|3475973_3476660_+\|peptidase-C39	unknown	unknown	gnl\|CDD\|239103
CP031467.1\|AXL53264.1\|3470328_3471165_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143600

Protein	Function_ID	Function_description	E-value
CP031467.1\|AXL53255.1\|3455779_3456151_-\|cupin	gnl\|CDD\|380356	cd02227, cupin_TM1112-like, Thermotoga maritima TM1112 and related proteins, cupin domain. This family includes bacterial and plant proteins homologous to TM1112, a Thermotoga maritima protein of unknown function with a cupin beta barrel domain. TM1112 (also known as DUF861) is a subfamily of RmlC-like cupins with a conserved "jelly roll-like" beta-barrel fold; structures indicate that a monomer is the biologically-relevant form.	1.02481e-19
CP031467.1\|AXL53258.1\|3463216_3464470_-\|ABC-transporter-permease	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.18126e-24
CP031467.1\|AXL53267.1\|3476665_3477904_+\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	7.06538e-07
CP031467.1\|AXL53262.1\|3468393_3469128_+\|thioredoxin	gnl\|CDD\|377584	pfam05988, DUF899, Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.	1.7297e-128
CP031467.1\|AXL53268.1\|3477969_3479367_-\|acetate-kinase	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000156283
CP031467.1\|AXL53265.1\|3471343_3472711_+\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.46944e-37
CP031467.1\|AXL53256.1\|3458602_3459583_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182077	PRK09791, PRK09791, LysR family transcriptional regulator.	7.56583e-53
CP031467.1\|AXL53273.1\|3486776_3488000_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
CP031467.1\|AXL53260.1\|3465954_3467337_+\|permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.21163e-133
CP031467.1\|AXL53269.1\|3480824_3481721_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176167	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.64486e-103
CP031467.1\|AXL53261.1\|3467599_3468007_+\|transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	1.65585e-16
CP031467.1\|AXL53263.1\|3469189_3470035_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	6.76375e-15
CP031467.1\|AXL53257.1\|3459680_3460844_+\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
CP031467.1\|AXL53270.1\|3481982_3483506_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
CP031467.1\|AXL53272.1\|3484310_3485999_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
CP031467.1\|AXL53271.1\|3483542_3484238_+\|histidine-utilization-repressor	gnl\|CDD\|188194	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. [Energy metabolism, Amino acids and amines, Regulatory functions, DNA interactions].	9.61074e-114
CP031467.1\|AXL53254.1\|3454237_3455629_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	2.99072e-59
CP031467.1\|AXL53259.1\|3464466_3465438_-\|photosystem-reaction-center-subunit-H	gnl\|CDD\|240289	PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional.	2.25385e-05
CP031467.1\|AXL53266.1\|3475973_3476660_+\|peptidase-C39	gnl\|CDD\|239103	cd02423, Peptidase_C39G, A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature.	2.76161e-50
CP031467.1\|AXL53264.1\|3470328_3471165_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143600	cd07576, R-amidase_like, Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer.	1.09472e-101

>CP031467.1|AXL53263.1|3469189_3470035_-|LuxR-family-transcriptional-regulator
MELEWHDLAFHREIGSVIEALDSAQFWTRLTRALERYVVFDNWVALRFAPGVAPLVCAESPTPDGTVDAMFQDYLAALYQLDPFYIAATGKPASGFVTLADVAPDNFSMTDYYQRYFRKNIVGDEVHFNYMIDARHTLAFSLGATQRYGERDLAVLALCAPWVIALLRQRLPYEAFDAPQTASSETAMRTATDTDAPADTPAYAARFEQVSSVSGRSPLTAREVEVAMLTLSGFSTRAIAEKLTISFETVRAHKKHIYTKLNVNSQSELFALFYEAGRKGA
>CP031467.1|AXL53262.1|3468393_3469128_+|thioredoxin
MDPQHRIGTREEWLAASKALLIEEKAYTRAGDELARKRRALPWVKVDKTYVFDTPQGRKTLPDLFDGRSQLIVYHFMLGPDWEEGCFGCSFVSDHMDGILTHLEHHDVSYVAVSRGPLAKIEAFRKRMGWKFPWVSSNESDFNFDYHVSFTPEEIASKKAFYNFTEQDVGIDELPGHSVFYKDEAGDVYHTYSTYGRGGEQFLGAYAHFDVTPKGRDEKKNMGEWLKHHDRYEEKASGCAACGS
>CP031467.1|AXL53261.1|3467599_3468007_+|transcriptional-regulator
MLLDRTFAALSDPTRRALLARLSKLNDLSVSELAEPFAMSLPAVMKHLDVLSEAGLITRSKTGRTVACRLSAGPMEEAMEWLTRYQRFWSESLDRLAAFVEEEPPCPPNPALPSSADSTPRPPKSFAPGRKRRNS
>CP031467.1|AXL53260.1|3465954_3467337_+|permease
MMEPHAQPISEVGAESFDGKGFLDRYFEISSRGSSQRTEIVAGITTFLAMVYSVFVVPGMFGRAGFDTSAVFVAVCLTTAFGSLLMGVWARLPIAIGCAISLTAFTAFGLVLGKGLHPNVALGAVFLMGVVFTAISVTGVRSWILRNLPTGIAHGTGIGIGLFLLLIAANDVGLVVKNPGAGLPVSLGNITALPAIMSVAGLAAIFGLVRRRVPGSILIVIIAISAISLAIDPAVAYHGVFALPSLSAPGHASLIGAMDIKGALSMAVLPSVLALVMTAVFDATGTIRAVAGQAGQLDANGRIINGGRALTADSLSSIFSGLLGGAPAAAYIESTVGVAAGAKTGMAAAVVGLLFLVVMFFSPLASLVPSYATAPALMYVGLLMLSNVSKLHMDDMVDAMSGLMCAVFIVLTANIVTGIMLGFATLVIGRVVSGEYRKLNVGTVVIAVVLVGFYLGGWAI
>CP031467.1|AXL53259.1|3464466_3465438_-|photosystem-reaction-center-subunit-H
MSGGFSRPAWRLLILAVFALFALSGCSLLWGPQQAPIVDATVMPVEPASAPVAASAPEPAETEAAEPEQPKKPKKPVVKPRKVEPPPPVVTPAPPPPAPPPLIVLRTIERSEARALLDSEVQKSDGKVVGRAVDLIADASGKPREMVVNLQGFLGVGDRKVNFPWNAFRFTPTAKTAPITLNATAAPTPAAKSTAVQLPLIDADVERSNGAKVGRVIDVLIDANAQPQAVVLDVNGMVSTERRTIAANWSALRFVAKDKALHPLIDLSDAQINATPPYASDKPIRAVSPAPPPAPAPAPVPAAAAASAAPATVTAASNARAAR
>CP031467.1|AXL53258.1|3463216_3464470_-|ABC-transporter-permease
MTGRTLVTARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMALSVGTISAMVSQVPGGAAVDALRNKKGAAAWAIFAIIFSAVLLAASPTVLPVIAAEVFHGFASCMLTPALAAISFALVGRANLGDRLGRNARWASIGSAVAAGLMGLFGEYYSPRAVFWLTAALAIPALFALTMIQRTDTVELPKAGPTPEQIERRESLRELLRDKRMLLFAACIVLFHLSNAAMLNLAAGEVTAGMGDNVQLVIAACIIVPQAIVAMMSPWVGRSAERWGRRPILLLGFSALPIRALLFAGISSPYLLVPVQVLDGLSAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTTAAGFVADHFGNAVSFFGLAAAGALAVLLVWAAMPETRDAGDADEAAPLADGKSAVR
>CP031467.1|AXL53257.1|3459680_3460844_+|amidohydrolase
MAIPAGIAELEDEMIALRRRIHAQPELAYEEFATGDLVAERLQEWGYTVHRGLGQTGVVGQLKVGGGTRKLGLRADMDALPIHETTGLPYASTVPGKMHACGHDGHTAMLLAAAKHLAQEKAFDGTLNLIFQPAEEGQAGAKKMLEDGLFDKFPCDAVFAMHNMPGFPTGKFGFLPGSFMASSDTVIIKVTGRGGHGAVPHKAVDPVVVCAQIVLALQSIVSRNIAPLDMAIITVGAIHAGEAPNVIPETAEMRLSVRALKPEVRNYLQERITAVACGQAAVFGARAHVDYQRRYPVLVNDAQMTSLARQVALDWLGEDGLIADMQPLTGSEDFAFLLERCPGSYLIIGNGDGEGGCMVHNPGYDFNDDCLATGAAYWVRLAQTFLV
>CP031467.1|AXL53256.1|3458602_3459583_-|LysR-family-transcriptional-regulator
MVATYLRVFQMKLHQLSTLAAIADTGSIRAAARSLDLSPAAVTKAMRELEADLHAPLLVRGASGVAFTEFGRALVVHARLVLGQLQRAEAEIEAMRGAAAGKLSIGVTPWVALTFLPPTVQRFRQRMPEVQLEFFEGLLAVVQPRLRDGSLDFSIGRPPPASPQSEFHNVPLFSTHSAVVARRDHPKAGCRTLLELEDAEWVLNWDPASRESISDNLFRKRGMRVPHTIHLAHSLAVVLGLLARTDMLSIFPWPLVEVSIAKENLWALPLRETVDETIVSITSRRGAPTSPAATCFLACLREVVDEGARSQDPELRRLFHSIELLL
>CP031467.1|AXL53255.1|3455779_3456151_-|cupin
MSTITFTRIDAKGPGASGLNPALHDPADVILEGAKAPHALNAFSDATNMLSAGVWQCDAGTLKLADLPIHEVCVLIEGEVVITSDDGRSERYAAGDAFILHKGFSGTWHMPVATKKYSIVYCG
>CP031467.1|AXL53254.1|3454237_3455629_+|FAD-dependent-oxidoreductase
MSESVKRAFEGVKLFPFWLDNPRAPAVERELIGPTSADLVIVGGGFTGLWAAIQAKEADPSLDVVLVEAGKVAYGASGRPGGIISTSVMHGLPNATRVFPQDLDVLEKLGQENLDGFKESLTRYGIEADVEWNGEMTVAVDPGHLDHLKGDYELHVAHGHDVVLLDSKGAREQLDSPLFAGAMWSRNRSGTIHPAKLAWGLKAAALKLGVRLHEHSPITRLEDLGATMIVHTQAGRIDTPRVLLGTGTADVGVTDIRRRVMQVRDHIIATAPLSDEQMARIGWNNRQGIYDTRTQLNYFRLTRDNRIIFGGRVSYHFGGDPNPAADRDERTYYKLAEAFYRTFPQLDDVRFTHAWGGPIDYCSRGAVFARRYHGGKSVFVAGYTGFGVAGSRFGAKMGLDMLWNRETLITSLDISRKGPSYIPPEPLRWIAAKITFNAFDGADDRGGWRRLWINSIKALGFPM
>CP031467.1|AXL53264.1|3470328_3471165_+|carbon-nitrogen-hydrolase-family-protein
MLQLELAQIPIVDGAVGVGGRNVQRVLQTIDQRAAGTDLIVFPETTLSGFPTRDTIGEVAETIDGPSLTAVRNAAREARVAVAVGFAERDGNRFFNTTVLVDERGEIALRYRKTHLWASDVGVFEPGDRYEVCSFKGLTVGLLICYDIEFPETARAVASLGADLLIVTNGNMEPFGPVHRRAIVARAMENQMFAALVNRIGSGDDNLTFPGESALIDPFGNVVHDAGHEERVLRATLDPALLEGAREHYRYLHDARIALDLATLDGEHGQRARVIRTR
>CP031467.1|AXL53265.1|3471343_3472711_+|amino-acid-permease
MTPTSPTERAGASAAPQSAHLKRTLGLPSVLLFGLAYMAPLIVYGTYGVLASASNDTAALAYLIALVAIVFTALSYGKLARLFPVAGSAYTYTRRSFNPHLGFMIGWATLLDYFFLPMVIWLIGAAYLSAAFPHIPSWIWIVAFIVLTSVLNILGIELANRFNIVLMVVQLAIVALFVALCCHYVTAAVGPGGLISAEPFFKPHVPLSATMAGAAIAAYSYLGFDAVSTLTEETIAPEKTIPRAIVLIALIGGAIFVIAAYTVQLAHPGAVFKDPDSAAFEVARKVGGDIFVTVFLAGLILAQFASGISAQASVGRLLYAMGRDEVLPKRIFGFVHPRFKTPALNIAIAGAIGLVALKLDVATSTSFINFGAFLAFTAVNLCVIRQFFNAKGSANAMGVIGGLLFPLAGAIADIWLLVSLEKTALVLGAVWFVLGLCYLGWITRGFRQAPPEVAV
>CP031467.1|AXL53266.1|3475973_3476660_+|peptidase-C39
MKPFAVCVALLCGVWASAAIADPIDVSDPSGADYTLHVTSLKEARFKRTIRQQFDFSCGSAALATLLTYQYDSPVSEQQVFTEMFEHGDQEKIRRLGFSLLDIRNYLIARGFEADGYEAPLAKLEQTKTPAIVLIVEHGYHHFVVVKGVRNGRVLVGDPATGTRAMSQESFEEKWKDRVVFVIHNRHDQARFNDLRDWHVAPDAPLYTGISREGLFSVVVPKLGPGEF
>CP031467.1|AXL53267.1|3476665_3477904_+|hypothetical-protein
MMKPEHLKLAGIVTMVCGGMSSLGAGATGSDSSTVASGRIIPMQSAPQDTAMGMMDAAAQETAPVVQDAAQDAAPDLTPDVAQTPDAAPVAQAVALDAEYAARTTIISANEVAVEVDAAVESASALDVPTVPTVPAVAAEAGVPMAASAESEGAQTTTATLSVAGDAAPVTVSLASNIAHVAHVAHVADVADVADVVHVADVADVVHVAATPATGEAQRDQAALKLGGVVDLVIPPDRHMQPADTDAHAIGAAVEHRPVAQHAAHADDADPAWASADLVAVNDNRLDDLRGGFDLPSGLVVSFGISREAFVNGNLVASTSFNIPNIAQMTPQQAQMLANANTGALIQTGLNNTVQPGALPGLTGAVIQNTLSNQQIQALTTINTTVNSLGAFKALNLGQTLNSALLSAVRPR
>CP031467.1|AXL53268.1|3477969_3479367_-|acetate-kinase
MKSLPYRRIGAIGYAALLLFNADAHAQSLETQAAQADQASINALRDELNQRIKELDAIKRKLADEEANFARLSRALEPGKLGTQRGTGGEDANGLPVGATAPNQGTATTGAQPAAAPAGNAQNAGSTAQQPAAAAPNQPVGEAPVADSRPPAVAPIFDQPGVLTPRGTLVVEPYFQFAYSSENQLSLVGYTIIPALLIGLINVSEVKTTTLTGGLAFRYGITNRLEFEVRVPYVYQTNDTVARQIFTGAAANSVISSSGNGIGDVEMTMRYQLNQGGPDKFYYVGWLRFKTATGKSPFDVVTDCVTTCVANTTGTGLPLRQPTGSGFLAVQPGLTWLFPTDPVVFFGNFSYLHSFGKGESLTLINGVQESLGHVQPGDIWGFNVGMGLALNEKASVSIGYDQSIVQPTSQNGQTVTGSVRTILGTLLIGYSYRISPKTTLNFSIGAGLTRDTPDLTLTLRVPMSF
>CP031467.1|AXL53269.1|3480824_3481721_+|LysR-family-transcriptional-regulator
MKTSTDELLVFVTVIDCGSITAAAEKLQQTVSGVSRALTRLEKKLDTALVRRTTRRLQLTEEGEAFLLRARAILDAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMKAFSALYPEIRLELTSNERIVDLLEQKVDIAIRIGALQDSTLHARALGRSKLRVLASPAYLAEYGEPRSVEALRAHRLIGFTAPEHLNRWPLRAGGKSKAELLKIEPAITASSGETLRQLALSGWGIVCLADFMTAADVRAERLVPILGNVLVDERQPVSAVYYQSASLAGRVQCFLDFMATRVRL
>CP031467.1|AXL53270.1|3481982_3483506_+|histidine-ammonia-lyase
MITLKPGYLTLPQLRQIAREHVALQLDPASHAAIDACAKAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQRNLVLSHAVGVGEPMSRPVVRLLIALKLSSLGRGHSGIRREVMEALITLYNADVLPVIPVKGSVGASGDLAPLAHMSATLLGVGEVFAKGERMPATEGLALVGLKPLTLQAKEGLALLNGTQASTALALYNMFAIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHQGQIDAAAAYRSLLQGSGINVSHADCDKVQDPYSLRCQPQVMGACLDQMRQAADLLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAVAEIGALAERRIALLIDATLSGLPPFLVRDGGVNSGFMIAHVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATFAARKLGDIAENVANILSIELLAAAQGVDLRAPHKTSPSLQKVMDAVRKDVAHYELDHYFAPDIAAVTRLVQNGTIAKLSPFSFASEQ
>CP031467.1|AXL53271.1|3483542_3484238_+|histidine-utilization-repressor
MNAPAYQGIKDFILGRIHAGEWAEGDQVPSENELAREFNVARMTVNRALRELTSEQVLTRVQGSGTFVARPKYESTLVAIRSISDEIVARGHRYQAKVLHIGASIADEALAEEMQVSAGSPVFHSRVLHFENDEPVQLEERWVNPAVAPEYALQDFTNTTPNQYLVRVAPLQRVEYRIEALAADADTRALLMMDELEPCLVLHRRTWSQSQVASVANLWHPGSRYRFTGHF
>CP031467.1|AXL53272.1|3484310_3485999_+|urocanate-hydratase
MNNPKHIDPRLDPTRTIRAPRGAEKTCKTWIAEAAYRMIQNNLDPEVAEHPHALVVYGGIGRAARNWDCFDQILTSLKDLNEDETLLIQSGKPVGVFRTHADAPRVLLANSNLVPHWATWEHFHELDRKGLMMYGQMTAGSWIYIGSQGIVQGTYETFFSVANQHFNGDPSGRWILTGGLGGMGGAQPLAATMAGFSMIAVECDETRIDFRLKTRYVDKKAATLDEALAMLDEAKKAGKPVSIGLLGNAADVFAECVTRGITPDCVTDQTSAHDPIHGYLPQGWNVEDWRERQKTVPDSIVLPAKQSMAKQVQAMLTLQERGAATLDYGNNIRQMALEMGVENAFDFPGFVPAYIRPLFCEGKGPFRWVALSGDPEDIYKTDAKVKELIPDDPHLHNWLDMARERIAFQGLPARICWVGVKDRYRLGQAFNEMVRNGELKAPIVIGRDHLDTGSVASPNRETESMKDGSDAVSDWPLLNALLNTAGGASWVSLHHGGGVGMGFSQHSGVVIVADGTDAAKERLGRVLFNDPATGVMRHADAGYELAQETAREAGLNLPMLGR
>CP031467.1|AXL53273.1|3486776_3488000_+|imidazolonepropionase
MKQTVWHHLKLCPEGDPQHTLPDAAIAVENGKIAWLGAASELPASYAAWPREDLQGAWVTPGLVDCHTHLVYGGQRADEFAQRLAGVSYEEIARQGGGIVSTVRATRAADEDSLFRQSAARLEALLAEGVTAIEIKSGYGLDLASERKMLRVARRLGERYPVTVYTTFLGAHALPPEFAGRADAYIDEVCDTMLPALADEGLIDAVDVFCERIGFSLEQSERVFNAAERHALPVKMHAEQLSNGGGTALAARHHALSADHLEFLDEAGVAAMKASGTVAVLLPGAYYFIRETQLPPLDLLRRYQVPIAISTDSNPGTSPTTSLLLMMNMATTLFRMTVPEVLQGVTTHAARALGKADRHGSLAAGRAADFAVWSVETLAELAYWIGRPLCARVVRAGETVYTRRDLS

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Crispr_ID: CP031467_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031467_2

4019492-4019568

Orphan

Consensus_repeat	Method
GCGCTAAAGCGCGAACTCCGGTCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031467_2

>merge|CP031467|2|4019492-4019568|CRISPRCasFinder
GCGCTAAAGCGCGAACTCCGGTCGACCGCTGTGCATGGGACCGGAGTAATCGCGCTAAAGCGCGAACTCCGGTCGAC

>CP031467|2|2|4019492-4019568|CRISPRCasFinder
GCGCTAAAGCGCGAACTCCGGTCGAC	CGCTGTGCATGGGACCGGAGTAATC
GCGCTAAAGCGCGAACTCCGGTCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031467.1\|AXL53630.1\|4035896_4037168_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
CP031467.1\|AXL53620.1\|4017360_4017909_-\|alkyl-hydroperoxide-reductase	unknown	unknown	gnl\|CDD\|239313
CP031467.1\|AXL53618.1\|4012363_4015846_-\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
CP031467.1\|AXL53629.1\|4035063_4035699_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP031467.1\|AXL53624.1\|4022835_4024077_+\|Twin-arginine-translocation-pathway-signal-sequence-domain-containing-protein	unknown	unknown	gnl\|CDD\|226587
CP031467.1\|AXL53628.1\|4033481_4034828_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
CP031467.1\|AXL53621.1\|4018095_4019445_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236531
CP031467.1\|AXL53623.1\|4021044_4022688_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378055
CP031467.1\|AXL53617.1\|4009823_4010858_-\|serine/threonine-dehydratase	unknown	unknown	gnl\|CDD\|107205
CP031467.1\|AXL53631.1\|4037451_4039797_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|223542
CP031467.1\|AXL53614.1\|4006540_4007020_+\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|381108
CP031467.1\|AXL53625.1\|4026060_4029504_+\|membrane-protein	unknown	unknown	gnl\|CDD\|227665
CP031467.1\|AXL53626.1\|4031248_4031701_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP031467.1\|AXL53612.1\|4001260_4003762_+\|cell-envelope-biogenesis-protein-AsmA	unknown	unknown	gnl\|CDD\|225529
CP031467.1\|AXL53627.1\|4031764_4032910_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
CP031467.1\|AXL53613.1\|4004824_4006435_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226702
CP031467.1\|AXL53615.1\|4007126_4009109_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362
CP031467.1\|AXL53619.1\|4016730_4017210_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|178851
CP031467.1\|AXL53622.1\|4019587_4020322_-\|two-component-transcriptional-regulator,-winged-helix-family	unknown	unknown	gnl\|CDD\|181883
CP031467.1\|AXL53616.1\|4009286_4009730_-\|mechanosensitive-ion-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569

Protein	Function_ID	Function_description	E-value
CP031467.1\|AXL53630.1\|4035896_4037168_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
CP031467.1\|AXL53620.1\|4017360_4017909_-\|alkyl-hydroperoxide-reductase	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	9.93007e-77
CP031467.1\|AXL53618.1\|4012363_4015846_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
CP031467.1\|AXL53629.1\|4035063_4035699_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	3.76767e-154
CP031467.1\|AXL53624.1\|4022835_4024077_+\|Twin-arginine-translocation-pathway-signal-sequence-domain-containing-protein	gnl\|CDD\|226587	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown].	3.78489e-102
CP031467.1\|AXL53628.1\|4033481_4034828_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.0034e-171
CP031467.1\|AXL53621.1\|4018095_4019445_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	5.45658e-78
CP031467.1\|AXL53623.1\|4021044_4022688_+\|hypothetical-protein	gnl\|CDD\|378055	pfam08811, DUF1800, Protein of unknown function (DUF1800). This is a family of large bacterial proteins of unknown function.	1.04444e-139
CP031467.1\|AXL53617.1\|4009823_4010858_-\|serine/threonine-dehydratase	gnl\|CDD\|107205	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.	2.10306e-113
CP031467.1\|AXL53631.1\|4037451_4039797_+\|DNA-binding-protein	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP031467.1\|AXL53614.1\|4006540_4007020_+\|chemotaxis-protein-CheY	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.72031e-61
CP031467.1\|AXL53625.1\|4026060_4029504_+\|membrane-protein	gnl\|CDD\|227665	COG5373, COG5373, Predicted membrane protein [Function unknown].	1.21193e-101
CP031467.1\|AXL53626.1\|4031248_4031701_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.98553e-20
CP031467.1\|AXL53612.1\|4001260_4003762_+\|cell-envelope-biogenesis-protein-AsmA	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	1.45191e-88
CP031467.1\|AXL53627.1\|4031764_4032910_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	1.27333e-157
CP031467.1\|AXL53613.1\|4004824_4006435_+\|histidine-kinase	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	7.35494e-45
CP031467.1\|AXL53615.1\|4007126_4009109_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.03083e-60
CP031467.1\|AXL53619.1\|4016730_4017210_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	8.90191e-99
CP031467.1\|AXL53622.1\|4019587_4020322_-\|two-component-transcriptional-regulator,-winged-helix-family	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	1.35044e-167
CP031467.1\|AXL53616.1\|4009286_4009730_-\|mechanosensitive-ion-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	8.50235e-82

>CP031467.1|AXL53621.1|4018095_4019445_-|two-component-sensor-histidine-kinase
MRIDRRLLTLAFGGLFWRTFLLIALLIAVSLAAWFQSFRVIEREPRAQRVALQLVAIVKLTRTALLYSDPDLRRALLQDLESNEGVRVYPRETTDKYKLQPDESLNRLIEHDIRGRLGDDTVIAQSVNDIPGVWISFKIDDDDYWVALDRDQLDNATGLQWAGWGVFALALSLFGAAFITSLVNRPFARLAMAARKVGSGQSPEPLPERGMGVAAETNRSFNQMVQDLEQLEADRALMLAGISHDLRTPLARLRLETEMSPSDQTTKDAMVDDIEQMDMIIGRFLDYARPVQRVPEPVDLSVIAGELAARMQSEDSMRLITRLAPSAVIEADETDMRRVVGNLLENARKYGLSDGDGIPHVILETRVSHSRVELSVVDEGPGIPEDQLALVTRPFYRVNSARTQANGTGLGMAIVQRLVGRYRGALRLRNRTPGPGLEVTIEFPLAKGV
>CP031467.1|AXL53620.1|4017360_4017909_-|alkyl-hydroperoxide-reductase
MKTVGDKVEAFTVTAAKPGFNNHEENGVSAFEEITEQSFPDKWKIIYFYPKDFTFVCPTEIVEFGKLVRDFEERDAVLLGGSVDNEFVKLAWRREHKDLSRLNHYSFGDVKGELIDQLGVRDKEAGVALRATFIIDPDNTIQHVSVNNLNVGRNPEEVLRILDALQTDEECPCNRPIGGATR
>CP031467.1|AXL53619.1|4016730_4017210_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MDFRIGQGYDVHALVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDAIFGAAAMGDIGRHFSDTDASFAGADSRVLLRECFARVKAAGFSIANVDSSVVAQAPKLAPHIEAMRANIAADLDLPLERVNVKAKTNEKLGYLGRGEGIEAQAAVLLVKN
>CP031467.1|AXL53618.1|4012363_4015846_-|transcription-repair-coupling-factor
MPDIAASSQYAPPVALVKAGQRFAFDGTHGSSDALLIARYHLAYREKMPLLAVVCESAVDAQRLAQEIGFFAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGDGRCDILLVPATTALYRMPPASFMAGYTFSFSQGERLDEARLKAQLTLAGYEHVSQVVRPGEYCVRGSLLDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFEETATLFHYLPEGAQLAFVGDLDAAIRRFTNDTRQRYNFLSHDRDRPILEPQRLFLSDEDFFAFAKPFARLALPANAGGGWSTSLPDLAIDRHAEDPVSALRAYLETTPNRVLFATESAGRRETLLQLLADNRLKPVSSDSFQDWLTSDEPFSLGVAPLANGFAVPVDGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLSELKIGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYASDSKLYVPVAQLHVISRYSGADPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALREGHAFPLEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGTVDVVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIQEIGFQLYTDMLNDAVKALKEGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERLSLYKRLANCEHNDSIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGISKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVATVKETLRALGTPSRGTAATAAAR
>CP031467.1|AXL53617.1|4009823_4010858_-|serine/threonine-dehydratase
MSTATPQHTDHTINGEPIPTLDDIATQHFALTPWVTRTPVFDRLDFPSLEGTVVNFKFELLQAGGSFKARGAFTNLLALDEAQRSAGVTCVSGGNHAVAVAYAAMRLGIGAKVVLFRAANPARVALCRQYRAEIVFAENLAEAFELVRRIEAEEGRYFVHPFNGYRTVLGSATLGYEWATQTPDLEAVIVPIGGGGLAAGVATAMRLANPRVHVYGVEPEGSDAMGKSFAANHTVKMGHMHTIADSLASPHTEEYSYELCRRHIDQLVTVSDDQLRAAMLTLFGQLKLAVEPACAAATAALLGPLCETLQGKRVGVLLCGTNTDPVSFAAHIERARHSQSQSPE
>CP031467.1|AXL53616.1|4009286_4009730_-|mechanosensitive-ion-channel-protein-MscL
MIKEFKEFALKGNVMDLAVGVIIGGAFSTIVNSIVKDLIMPVVGVATGGLDFSNKFVRLGDIPASFKGSPESYKDLQTAGVAVFGYGSFITVAINFVILAFIIFLMVKFINNLRKPAEAAPAEPPPTPEEVVLLREIRDSLKSSPQR
>CP031467.1|AXL53615.1|4007126_4009109_+|hybrid-sensor-histidine-kinase/response-regulator
MTEEVSTQPAAYVLVVDDDEGILRLARKSLERAGCRVAICSQVEAARERLVAGAPDLLVLDYQLSGPETGLDFFRRLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLSQVRLQKASDEALLLRDREQHYRTLSEALPHLVLTCNAAGDCDFLSKQWFDYTGLAESSSYGLAWLDAVHPDDREEIRRTWLKAVTSGAGDYRHELRIRRHDGAYRWFDIRAVAMRDAEGNVSKWFGSCTDIHPQREAIEERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEMIPGLPDQARSSVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVGKNAQHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTHDERMHVQISVEDTGIGIEPEQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVIAQSPGAHCGATFTITLPTAAAPEELTPVAAPNEVHHPGVLTILLIEDHVDTAEVMAQLIRSQGHDVTTVGRVDDALAATQSQKFDLVISDVGLPDGTGLDFVKAFREHSDAPAVALTGFGTDEDVRRCLSAGFTSHLTKPVNFGQLETMIESAVTRKADKNEGEA
>CP031467.1|AXL53614.1|4006540_4007020_+|chemotaxis-protein-CheY
MSHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGPAPADAAARPYPPREDLTNFVVLLDLKMPRVDGFEVLRRLKDSPQTAAVPVIVLTTTDDPREIARCYELGCNVYITKPVEYDAFIEAVRRLGFFLQVVKLPPGHRLAAP
>CP031467.1|AXL53613.1|4004824_4006435_+|histidine-kinase
MKLFTKGLLLIAVPSVVELALLGVVFDTQEQTAQAARWVSNSKQILYQSSAIVDPLLRQAARVRTGMVVGDPSFVDRHTVWVDLGDRLSNLETLVADTPQQVVRVRKMQQAIDAYREQAATISQALRAGHNVNSFAAQDTGALPQQIALFRDQLVEFSHEASRLDVERGAALARRRARQQYALIAAVLGSMLIWAATAMVFARSIGRRLEVLTGNAERLGSGRPLAAPLSGSDEIAALDAVLHQTGERLREAEDEQAVLKVRLEARARELAGVNEELRQETQDNEMFIYSVSHDLRSPLVNLQGFSKELQVSCDELDSLVEAAKLPEAEHRRMVHILDGDVRESLQYLRTAVTRAASIIDALLRISRAGRLEYQWQRVSVGRVVGKVVDALQGAISQRGTVVTVRELPPAWGDPGAIEQIFSNLIGNALNYLDPVRNGRIEIGALEQEPVDETEPRAVRTRTYYVRDNGLGIPAAYMSKVFRAFQRLHGDVASGDGIGLAVVRRMVERHGGRVWVESAEGAGSTFFVVLPEQPARN
>CP031467.1|AXL53612.1|4001260_4003762_+|cell-envelope-biogenesis-protein-AsmA
MAVSSTIGRRIGKIIAWLVAIIVILIVALAIFILTFDWNRARPYIDDKVTQAIGRPFAINGDLKVGWRHPVGETGWRGWVPWPRFSAANITVGNPAWAKQPHFATLDEIDFQVKVLPLLAHDIVIPAINLVNPSVDLERLLDGRDNWTFKLASSGGPSEWKLDLHDIAFAKGNIALSDQQKKVEMQMAIDTLGQPIPIGEAMKQQEAASRSASAEAVGKAGASKLTAQANAQAASEAAAASAAAASGASSTEIAASGVTAANGASGALIAGGSKGSKGANSANGASEGASGAAAASVSSAREAGTPNGAGPAIPLYAIGWTVKGTYNRTPVSGSGKVGGVLALQDVNRPFPVQADVKAGDLRVGLVGTITDPAHLAAVDLRLWLQGNSLSRLYALTGVTLPDTPPYATEGRLVGQFKSGGNVFKYENFTGRVGGSDLNGSLTYTAREPRPLLQGELVSNLLQFADLAPVIGADSNASKARRGDATAQPGNKALPVEEFRTDRWKAIDADVTFTGRRIVKEANLPITDLYTHVVMTGGVLSLEPLKFGVAGGSLESDIHLDGSTTPLKGRFATSARHLKLKELFPNFKTMQNALGEINGDAALTATGNSPAALAATSNGEVKALITDGTVSRLLMEAAGLNVANVVYEKLFGNRDVKINCAAADFVATNGVLDSRVFALDTDDAVIDIDGNVNLRDESMDLGVHPHTKGFRVFSLRSPLYVKGTFKDPHVGVNAAALALRGGAVIGLGLINPFAALIPLLAPSNNKPLPCGQLLSQIRQAPTAPPPGMKQPPKPAISLDGAPVNKSSTGASSPATAKKNPAAMSPATAVEYKGN
>CP031467.1|AXL53622.1|4019587_4020322_-|two-component-transcriptional-regulator,-winged-helix-family
MPTMETKNPSKILVVDDDPRLRDLLRRYLGEQGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETTEVFEFGEFALNLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDGAA
>CP031467.1|AXL53623.1|4021044_4022688_+|hypothetical-protein
MMKVLTGGKVGRWLAVTAAALAAVTWCAPAPAVQQGASHAPHSRHRAPAAASAVSPADEDILDADDARFFLTRVGFAPDSGELAQYVGLTREQAVDKVLATVRTEAVTPLPDWVLEPIPTREIRKAWTDDQRRDEQRLRGQRYEALRAWWLREMLGTPSPLTERMTLFWHNHFTSGQDKVQYPQQMAQQNMLLRRDALGNFGELLHDVAKDPAMLQYLDGAGNRKGKPNENFAREVMELFTLGEGRYTQRDVSEAARAYTGWSLDPDTQAYVWRANQHDDGEKTVLGQAGPFDGDQVLDILLAQPETATFVTAKLWREFVSDTPDPARIAPIAAQFRASHYDIKVALRGLFMSDAFWDDGDRGVLVKSPVEFVVGTLRAFDIGYDNTAPFAAEVRTLGENLFYPPNVKGWPGGAIWINSSTLLARKQFVEQLFRATETAGPRRTNDPMSAKIAASGVPGHMQANPPVQRAAARVGQAGPANQGGVRFDIDTWLARYNTAPTAKPGLSAELQLQHAVLPLTPVDAIETDSTASAYLEALLMDPAYQLK
>CP031467.1|AXL53624.1|4022835_4024077_+|Twin-arginine-translocation-pathway-signal-sequence-domain-containing-protein
MKRRSFLSMGAAAGATLWLPRAFGAQAAAGGPTNRGYGNLLILVELKGGNDGLNTVIPFADPTYYQLRKNIGIKREQAIQLDERTALHPSLQPLMPLWQSQQLAIVQGVSYAQPNLSHFRSIEIWDTASRSDQYLREGWLTRTFAQAPVPAGFAADGVVIGSAEMGPLANGARAIALVNPAQFVKAARLVTPVSLHERNPELAHILDVENDIVKAADRLRPTQGQAQLKTVFPGGAFGGSIKTAMQVLAAGDTPNEAPLGGTPQRQPKSGQGVAVIRLTLNGFDTHQNQPGQQAALLKQLAEGFASMKSALVELGRWDETLVMTYAEFGRRPRENQSNGTDHGTVAPHFVMGGRVRGGLYGVPPVLARLDGNGNLPVGVEFQRLYATVLGPWWGLDASAILQQRFEPLPLLRA
>CP031467.1|AXL53625.1|4026060_4029504_+|membrane-protein
MSVIFAVIGAVIGIIAAVSNDFSIGFGALMGGVGGVALARLLQKKSPGTVSESTSRPVATDRLSPSGTSASPSGELAARVERLEREIVALRGEIHELRTGVAGASTESADGGPATFKLGPADVVPRPYAVPPAAGQTARRESETTSAQAVAVRSTASASAVTPPAMAGTPASSEPGASSTLNVEPIGPMALPPSAGSLLPPPLSAEPLPAKTPFAPPSPPAPPRGPGLAERLFKSARDWLFGGNTVVRVGIIVLFFGIAFLLKYAADNSLLPIEFRLAGVALAATALLGLGWRIGERRGAYGLVLQGGGVGALYLTVFAATRLYHLLPAGAALPLMIAICGLSAFLAVRQNASSLAFMGSAGGFLAPVLLSTGGGNHVMLFSYYALLNAGIFAIAWFKAWRPLNLLGFVFTYSIGAAWGATAYRPELLASTEPFLILFFLMYVGIALLYAVRREVALKHYVDGTLVFGTPLVAIGLQAALMKDTEFGLAWSAVALAAFYLAVAGGLARQRARLGMMFEAMLALAVIFATLAVPLAFTGPTTSATWAIEGAAITWLAVRQRRLMAFGFGLLMQLAAAGAYGVGMFAQIDGAHAWPILNGAYIASVLIAVAGIFTGWRLHGRGEAGAWHAWMPQIGLVAGVWGLCWWILGGLGEIHAYAQTHLAYDHDRFEIAVAALFAALTAWLAHGARRKLRWPLAELPALALVPVLALLTLNLFMLGRAPVSGYGWLVCAVVAASVYLLLWRQQRDVGDRVLAPLHALMFWTAGALAALEGYWGLRAYVPEGAWSWSAWAYGFGTLLLLVAGVGHRLRWPVARFVTAYQVWAAAPLAALLWGWSIASVTSDGSAAPLFWLPIANPLDVAQILAFIACAVWLRRLRALGVHWHPRAFDYAVLATLFLWFNALLLRTLHHHFHAAYDVDAVLQSFNFQQVFLVGWSAFAFAGLWLARRDSIVRLCAIASTPLVLVMWAWTFYANLTQDGGVWARLPLLNPLDLVQAVIFALAAVWLVRISRLGVPVGEYRVPLQVAVGVTGFIWLNAMLLRTLHHWIGVPYRLDEMSHSMLVQASVSVFWTVCALAMMIWATRRASRIFWFIGGGLLTVTVVKLFLFDLSHVTGIERIVSFIGIGLMLLLIGYFSPLPPKAVVLETKQ
>CP031467.1|AXL53626.1|4031248_4031701_-|MarR-family-transcriptional-regulator
MKASARTGLEQFLTYRLHVLNKLAERGISERYQDKLGVTLPEARVVASVGSFGPFSIMELARHANLDKSQASRAAEALIKQGLVKREPSAEDGRVVLVSLTPEGRALFRKVMPIARKWNGDMFDCLDEQEKLAFGAALDKVINTMSEREE
>CP031467.1|AXL53627.1|4031764_4032910_-|glycerate-kinase
MPNLPSSPVVVIAPDSFKGSLSAEQVAQAIASGIQRARPDASVRICPMADGGEGTLDAMLTSGGERRKLSVRGAAGPVREALTGLLADGSAIIETAEVVGITDPVGMGVPVEARSTRGMGEAIRVLLDAGVRRFFVALGGSSTNDGGAGLLAGLGLKLFDAQDKELDATPEQLARVARLDVSQLDARLKDTQFVGMSDVDNPLTGDHGATAVFGPQKGVKPEQVAPIDAALARFADLLEAALGRTARDQAGAGAAGGLGFALHMLGARFEPGAETVARQIGLDAALEGANWLITGEGRSDVQTLHGKAPFIACRHAQAAGVPATLLSGAVDSAALPRLAEYFSGCFSPAPGPITLEVAIRDAARLLADAAEQLTRLKYGAR
>CP031467.1|AXL53628.1|4033481_4034828_+|trigger-factor
MANVVENLGKLERRVTISLPKDAVQKEVDSRIRQLAKNVRMPGFRPGKVPLKMVTQQYSGQVEAEVLSDKVGKEFFDISRAENLRVAGQPSFAPKADAAEGDYAFDATFEVYPEVKLGDVATAEIERTTTTISEAEIDRTLDILRKQRVHFHARGESGEHGDGGADTAAKDGDRVTVDFVGKIDGEAFQGGSAEDFAFVLGEGRMLPEFEKAALGLKVGESKEFDLAFPADYHGKDVAGKTAQFTITMKKIEWPHLPEIDAEFAKSLGIEDGDLVKMRAEIKDNLEREAKRRTQAIVKNQVMDALLKISELDVPAALIAQDQERLVGMARQDLEQRGVPNAADAPIPAEMFKEQAERRVKLGLVLAELVKANELQAKPEQIRAEVDEFAKSYEDPKEVVRWYYSNQQRLAEMEAYVVEANVVDFVLSKAKVTDKEVSFEELASATAQA
>CP031467.1|AXL53629.1|4035063_4035699_+|ATP-dependent-Clp-protease-proteolytic-subunit
MLDTLTSQSSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHHTGQPVERIARDTDRDNFMSGDDAQAYGLVDQVAHKRP
>CP031467.1|AXL53630.1|4035896_4037168_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MADKKGSNSEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAGAGIEAGLSKSDLPSPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVARKAIRRKTGARGLRSILEQALLDVMYDLPQMKGVSKVIIDDNVIDGDGKPLLIYEDAPKVAGSN
>CP031467.1|AXL53631.1|4037451_4039797_+|DNA-binding-protein
MVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKTAAKDEPTEKDMYEVGCVANILQMLKLPDGTVKVLVEGLQRAKTLSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLSGIDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEEGADLEELEKRITAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTLIGLPWRKKSKVNNDLSNAERVLDEDHFGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLTKVGVRNPLFLLDEVDKMGQDFRGDPSSALLEVLDPEQNHTFADHYVEVDFDLSDVMFVATSNSLNIPPPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEVDVTESAIRDIIRYYTREAGVRSLEREISKICRKVVKMLLLKKAEGAVKVDGSNIDTFLGVRKYDFGLAAKENQVGQVTGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESVEAARSVVRSRSRRLGVKDEAFEKQDIHIHVPEGATPKDGPSAGIAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKLVLIPEENVKDLTEIPDNVKNAIEIMPVRWIDRVLELALERVPQALPEEESKPAAPVAAAEPGKDAGATEVVKH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031467_2	2.1\|4019518\|25\|CP031467\|CRISPRCasFinder	4019518-4019542	25	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1258810-1258834	3	0.88
CP031467_2	2.1\|4019518\|25\|CP031467\|CRISPRCasFinder	4019518-4019542	25	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1263479-1263503	3	0.88
CP031467_1	1.1\|3470213\|35\|CP031467\|CRISPRCasFinder	3470213-3470247	35	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	865548-865582	8	0.771
CP031467_1	1.1\|3470213\|35\|CP031467\|CRISPRCasFinder	3470213-3470247	35	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	870228-870262	8	0.771

1. spacer 2.1|4019518|25|CP031467|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 3, identity: 0.88

cgctgtgcatgggaccggagtaatc	CRISPR spacer
agctgtgcataggaccggagtaagc	Protospacer
 *********.************ *

2. spacer 2.1|4019518|25|CP031467|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 3, identity: 0.88

cgctgtgcatgggaccggagtaatc	CRISPR spacer
agctgtgcataggaccggagtaagc	Protospacer
 *********.************ *

3. spacer 1.1|3470213|35|CP031467|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.771

ggtcgaccgctagtgcatgggaccagagtaagggc	CRISPR spacer
acccggcaactattgcatgggaccagagtaagcgc	Protospacer
. .**.* .*** ******************* **

4. spacer 1.1|3470213|35|CP031467|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.771

ggtcgaccgctagtgcatgggaccagagtaagggc	CRISPR spacer
acccggcaactattgcatgggaccagagtaagcgc	Protospacer
. .**.* .*** ******************* **

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031466

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031467

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection