CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP029246	Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 chromosome, complete genome	1 crisprs	DinG,DEDDh,cas3,csa3,WYL	0	10
CP029248	Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 plasmid pOSUEC_D, complete sequence	0 crisprs	csa3	0	3
CP029247	Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 plasmid pOSUEC_F, complete sequence	1 crisprs	DEDDh	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029246_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029246_1

3384078-3384192

Orphan

Consensus_repeat	Method
CCCTCTCCCTGTGGGAGAGGGCCGGGTTGAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029246_1

>merge|CP029246|1|3384078-3384192|CRISPRCasFinder
CCCTCTCCCTGTGGGAGAGGGCCGGGTTGAGGGCGAGGTAAAAGCAAAACGGCAACCCCGTTGCCGTTTTTAGTGTTTGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGC

>CP029246|1|1|3384078-3384192|CRISPRCasFinder
CCCTCTCCCTGTGGGAGAGGGCCGGGTTGAGGGC	GAGGTAAAAGCAAAACGGCAACCCCGTTGCCGTTTTTAGTGTTTGCT
CCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029246.1\|AXM00749.1\|3380473_3381673_-\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
CP029246.1\|AXM00747.1\|3376396_3380254_-\|enterobactin-non-ribosomal-peptide-synthetase-EntF	unknown	unknown	gnl\|CDD\|236668
CP029246.1\|AXM00742.1\|3369791_3370967_-\|isochorismate-synthase-EntC	unknown	unknown	gnl\|CDD\|184977
CP029246.1\|AXM02091.1\|3388746_3389133_-\|addiction-module-toxin-RelE	unknown	unknown	gnl\|CDD\|368831
CP029246.1\|AXM00754.1\|3386527_3387334_-\|manganese/iron-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|185016
CP029246.1\|AXM00743.1\|3371155_3372115_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
CP029246.1\|AXM00757.1\|3389271_3391305_-\|high-affinity-choline-transporter-BetT	unknown	unknown	gnl\|CDD\|236635
CP029246.1\|AXM00752.1\|3384846_3385686_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
CP029246.1\|AXM00744.1\|3372161_3373409_-\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
CP029246.1\|AXM00748.1\|3380250_3380463_-\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|225790
CP029246.1\|AXM00755.1\|3387336_3388248_-\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
CP029246.1\|AXM00746.1\|3375507_3376308_+\|iron-enterobactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
CP029246.1\|AXM00753.1\|3385682_3386531_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|334323
CP029246.1\|AXM00751.1\|3384221_3384911_+\|enterobactin-synthase-subunit-EntD	unknown	unknown	gnl\|CDD\|182334
CP029246.1\|AXM00758.1\|3391433_3392021_+\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
CP029246.1\|AXM00759.1\|3392034_3393507_+\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
CP029246.1\|AXM00756.1\|3388459_3388744_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225495
CP029246.1\|AXM02090.1\|3374521_3375511_+\|iron-enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182463
CP029246.1\|AXM00745.1\|3373517_3374522_+\|Fe(3+)-siderophore-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
CP029246.1\|AXM00750.1\|3381819_3384060_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410

Protein	Function_ID	Function_description	E-value
CP029246.1\|AXM00749.1\|3380473_3381673_-\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0
CP029246.1\|AXM00747.1\|3376396_3380254_-\|enterobactin-non-ribosomal-peptide-synthetase-EntF	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
CP029246.1\|AXM00742.1\|3369791_3370967_-\|isochorismate-synthase-EntC	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
CP029246.1\|AXM02091.1\|3388746_3389133_-\|addiction-module-toxin-RelE	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	4.31615e-06
CP029246.1\|AXM00754.1\|3386527_3387334_-\|manganese/iron-ABC-transporter-ATP-binding-protein	gnl\|CDD\|185016	PRK15056, PRK15056, manganese/iron ABC transporter ATP-binding protein.	0
CP029246.1\|AXM00743.1\|3371155_3372115_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	0
CP029246.1\|AXM00757.1\|3389271_3391305_-\|high-affinity-choline-transporter-BetT	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
CP029246.1\|AXM00752.1\|3384846_3385686_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.24762e-72
CP029246.1\|AXM00744.1\|3372161_3373409_-\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
CP029246.1\|AXM00748.1\|3380250_3380463_-\|MbtH-family-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	6.57585e-27
CP029246.1\|AXM00755.1\|3387336_3388248_-\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	4.17063e-149
CP029246.1\|AXM00746.1\|3375507_3376308_+\|iron-enterobactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	0
CP029246.1\|AXM00753.1\|3385682_3386531_-\|metal-ABC-transporter-permease	gnl\|CDD\|334323	pfam00950, ABC-3, ABC 3 transport family.	6.83391e-81
CP029246.1\|AXM00751.1\|3384221_3384911_+\|enterobactin-synthase-subunit-EntD	gnl\|CDD\|182334	PRK10251, PRK10251, enterobactin synthase subunit EntD.	3.02128e-70
CP029246.1\|AXM00758.1\|3391433_3392021_+\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	3.33362e-117
CP029246.1\|AXM00759.1\|3392034_3393507_+\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
CP029246.1\|AXM00756.1\|3388459_3388744_-\|transcriptional-regulator	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	3.67146e-14
CP029246.1\|AXM02090.1\|3374521_3375511_+\|iron-enterobactin-ABC-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	0
CP029246.1\|AXM00745.1\|3373517_3374522_+\|Fe(3+)-siderophore-ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.36742e-175
CP029246.1\|AXM00750.1\|3381819_3384060_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0

>CP029246.1|AXM00750.1|3381819_3384060_+|TonB-dependent-siderophore-receptor
MNKKIHSLALLVNLGIYGVALPAMADDNTASAQHEDTMVITAAEQNLQAPGVSTITADEIRKNPPARDVAEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVTSRNSIRLGWRGERDTRGDTGWVPPEMIERIEVIRGPAAARYGNGAAGGVVNIITKKFDDQWHGSWNTYLNAPEHKDEGSTKRTNFSLSGPLGGDFSFRMYGNLDKTQADAWDINQGHQSDRTGAYANTLPAGREGVENKDINGVVRWDFAPMQSLEFEAGYSRQNNLYAGDTQNTNNDNALVKKNYGKETNRIYRQNFAVTWNGGWDNGITTSNWAQYEHTRNSRLGEGLAGGLEGLFNSNKFTDTDLADVMLHSEINLPIDFIVNQNLTLGTEWNQQRMKDSTSFTQTQQGGPIPGMSEDRSPYTSAEIFSLFAENNMELTDSTMLTPALRFDHHTIVGNNWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNPNYLLYSKGQGCYASSDGVGCYMMGNDDLKAETSINKEIGLEWKRDGWLAGVTWFRNDYRNKIEAGYAPIGQTSTGKVTTDIYQWENVPKAVVEGLEGSLNVPVSDTINWTNNITYMLQSKNKETGDRLSIIPEYTLNSNLSWQVRQDVSLQSTFTWYGKQQPKKYNYKGQPVTGSEKDEVSPYSIVGLSATWDVTKNVSLTGGVDNVFDKRQWRAGNAQTTGNTTTGAYMYGAGAYTYNEPGRTWYMSVNTRF
>CP029246.1|AXM00749.1|3380473_3381673_-|enterochelin-esterase
MTVLTTGSEAWWQAKNGPERERHQENYRVTFWWRDPAGTQKTSTVKRVWLYVTGVTDHHQNARPQSLERVPDTDVWQWQGEFSPEWRGSYCFIPSDNENDFADAVFEGEQPDRMALREGWRKLLPHAVSDPLNPQSWRGGRGHAVSALEMPEAPVQPGWNHPDTPYNKPVCIDWHSARLKNRRRVWIFTTGDESPERPLAVLLDGQFWAESMPVWPALASLTHEGKLPPAVYVLIDVIDTAHRSRELPCNPDFWLAVQEELLPQVKSMAPFSDRADHTVVAGQSFGGLSSLYAGLNWPQRFGCILSQSGSYWWPHRGAQQDGLLIEQLKAGEKTARGLRIVLEAGRNEPLILRANQAIFAELHTQQPVFWRQVDGGHDALCWRGGLTQGLMTLWQPLIQ
>CP029246.1|AXM00748.1|3380250_3380463_-|MbtH-family-protein
MEFSNPFDNPQGQFAILQNDQGQYSLWPQQCELPAGWRVVCEPQSQEACQQWLAEQWQTLEPFYFAGERA
>CP029246.1|AXM00747.1|3376396_3380254_-|enterobactin-non-ribosomal-peptide-synthetase-EntF
MNRLPLVAAQPGIWMAEQLSSLPNAWSVAHYTELKGAIDAPLLAKAIAEGMMQADTLRMRFAEDNGEVWQWIDEAMLLPEPSIVRVDSHDAAVALMEADLNQNLRVDSGLPLAFHQLIQVGESHWYWYQRYHHLVVDGFSFPAITRQIAAIYAAWQKGEPAPASPFTPFAEVVEEYQRYRDSEAYQRDGAFWAEQRQQLPSPVSLSSAPLPGHAATTDILRLKMAMDGRAFSQLAQMAGQAQRTDLALALVVLWLGRLTGRLDYAAGFIFMRRMGSAALTATGPVLNVLPLAVNIRPHESLPELALRLANQLKKMRRHQRYDAEQIVRDSGRAAGDEALFGPVLNVKVFDYQLDIDGVEAITHTLATGPVNDLELALFPDEQGGLSIEILANGQRYDEATLKGHAVRLNAMLTQFAANPDLRCGDVETVSEQEYARLARINDTGLALPSTTLADLVAEQASKTPDAPALADAHTELNYRQMREQVVALANLLRARGVKPGDSVAVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDAKPSLLITTDEQLPRFSDLSVETFSYNTLLPTSGAEPLRLAKPEQTAYIIFTSGSTGRPKGVMVGHTAIVNRLKWMQDHYPLTAHDVVAQKTPCSFDVSVWEFWWPFIAGAKLVMAEPDAHRDPQAMQSFFAEYGVTTTHFVPSMLAAFVASLTPENAHCCRTLKQVFCSGEALPTALCREWEQLTHAPLHNLYGPTEAAVDVSWYPAYGPELAAVEGNSVPIGFPVWNTGLRILDAMMRPVPFGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRSDDQLKIRGQRIELGEIDRAMLALPDVAQAVAHACVFNQAAATGGDARQLVGYVVSESGLPLDRDALLASLKAQLPPHMVPVVLLQISALPLSANGKLDRKALPLPELTSRTSGRAPETQTEVAVAQAFSSLLGCAVNDIEADFFALGGHSLLAMRLAAQLSRAFSRKVTPGQIMVASTVSKLSALLDSQMSDEQAQRLGYETLLPLRESNGPTLFCFHPASGFAWQFSVLARYLSPRWSIVGIQSPRPNGPMQQCADLDGVIEHHLNTLRKQQPQGPYYLFGYSLGGTLAQGIAARLREQGEAVAFLGLLDTWPPETQNWAEKEANGLDPAVLAEIERERQAFIAAQQGQGSSELFNAIEGNYADAVRLLTTAHSARFDGKATLFVAERTRTQDPQAAWAPWVGELEVYSQDCAHVDIISPQAFEKIGPVLKEILG
>CP029246.1|AXM00746.1|3375507_3376308_+|iron-enterobactin-ABC-transporter-ATP-binding-protein
MTDSTTRLRGENLTLGYGKKIIARDLSVAIPDGHFTAIIGPNGCGKSTLLRTLSRLMSPVEGSVFLDGEQIQRFASKEVARRIGLLAQNATTPGDITVQELVSRGRYPHQPLFTRWRKEDDEAVKRAMQATGITELAQQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSELNRTQGYTLAAVLHDLNQACRYATHLIALRDGEIVAQGAPKEIVTPELIARIYGMRCMIIDDPVAGTPLVVPLGKRAV
>CP029246.1|AXM02090.1|3374521_3375511_+|iron-enterobactin-ABC-transporter-permease
MAPSRRLLTSVALLVVASLLLAVWSLQSGAVTLDFAQVFHALTGSAPRNITMVVTEWRLPRVAMAILVGAALGVSGAIFQSLMRNPLGSPDVMGLNTGAWSGVLVAMVLFGQHLTAITFTAMAGGILTSLLIWALAWRNGIDTFRLIIIGIGIRAMLMAFNTWLLLQASLETALSAGLWYAGSLNGLTWGKTWPAAPLIILMFIGALLLVRRMRLLEMGDDSACALGVSVERSRLMLMLVAVLLTAASTAIAGPISFIALVAPHIARRLSGTARWGLTQAALCGAVLLLAADLCAQRLFTPYQLPVGVVTVSLGGIYLIVLLVQESRKK
>CP029246.1|AXM00745.1|3373517_3374522_+|Fe(3+)-siderophore-ABC-transporter-permease
MSFSSSAVRAIAVPVLLLLLILAIALSLLVGAKPLPASVIVDAISGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGILGVNSGASFAIVLGAALFGFTSPSEQLVMAFCGALAASLVVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLSNGIALLNPDVYDQLRFWQAGSLDIRTLETLKVVVIPASVAAAVALCLSRALNSLSLGSDTATALGNRVARTQLTGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADVLGRLLVPGELRVSVVSAFIGAPVLIFLVRRRRGGSA
>CP029246.1|AXM00744.1|3372161_3373409_-|enterobactin-transporter-EntS
MNQKSWLLNLSLLKTHPAYRAVFIARFISILSLGLLGVAVPVQIQTMTHSSWLVGLSVTLTGGAMFIGLMVGGVLADRYERKKLILLARGTCGVGFVGLCLNAMLPEPSLVAIYVLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMVGGLLLATGNVAWNYGLAAAGTFITTLTLLRLPLLPPPPQPREHPLKSLMAAIRFLFSNPLIGGIALLGGLLTMASAVRVLYPALAGEWQMSASEIGVLYAAIPLGAACGALTSGNLAQSARPGLIMLVATLASFIAIGFFSLMPVWALGVMCLVIFGWLSAVSSLLQYTLIQTQTPEGMLGRINGLWTAQNVTGDAIGAAILGGMGAIMTPVASASSSGFVLAMVGAILLVTLVELRRFRQEVALNDGAA
>CP029246.1|AXM00743.1|3371155_3372115_+|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MKIAAVCRNALLLTGLFVLGLTSAAADDWPRQVSDSRGVHTLESKPTRIVSTSVTLTGSLLAIGAPVIASGATTPNNRVADAQGFLRQWGDIAKQRKVARLYIGEPSAEAVAAQMPDLILISATGGDSALALYDQLSAIAPTLIINYDDKSWQELLTQLGTITGQETQAAERIAAFDKQLAQVKQQMKLPPQPVNAIVYTAAAHTANLWTTDSAQGKLLHQLGFTLADLPAGLQTSTSQGKRHDIIQLGGENLATGLNGEGLFVFAGDEKDVNAIYANPLLAHLPSVKNKRVWALGTETFRLDYYSAMLVLDRLNALFK
>CP029246.1|AXM00742.1|3369791_3370967_-|isochorismate-synthase-EntC
MDTSLAEEVQHTATTLQADSFFFMSPYRSFTTSGCFARFSEPAVGGDDPAGPFQQKLAQAFRNAKNSGIAHPVMVGAIPFDTRKPSSLFIPQRWQTFSRPARQQSARYASGAQTLNVQQRTEIPPQPVFEEMVARAASLTATPQVNKVVLSRLIDIATDKQIDSSALMERLIAQNPASFNFHVPLEDGGVLLGASPELLLRKEGAHFSSLPLAGSARRQPDDVLDREAGTKLLASEKDRHEHDLVTQAMKTILEPRSHHLSMPASPQLITTPTLWHLATPVEGDARENENALTLACLLHPTPALSGFPHQAAKELIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRCARLHQNTVRLFAGAGIVPASSPVGEWRETGVKLSTMLNVFGLH
>CP029246.1|AXM00751.1|3384221_3384911_+|enterobactin-synthase-subunit-EntD
MHTTHSTFSLAGHTLHRITFDPTTFTDADLLWLPHHAQLANAGRKRKADHLAGRIAAAHALPDHTVPAIGPSGEPLWPQGISGSITHSGTQAIAVVTQYPALIGIDCETILSENEAREIKDGIIDTQEEPVLSRMGYPFALALTLVFSAKESLFKALFPQVQAWMGFDCARVTKLDDKTLTLALTRQLAGFEEGTAFPLHWQQHGEQVITLLSHAPGDEPSRWSPQTSR
>CP029246.1|AXM00752.1|3384846_3385686_-|metal-ABC-transporter-permease
MMTLLLEPFQFAFMNNALLISLLVAVPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAWMMGLPLALGAFVAGLFCAVATGYLKDNSRIKQDTVMGIVFSGMFGAGLILYIAVKPEVHLDHILFGDMLGINGMDILQSGLVAGMIALVIGLKWRDFLLFCFDYQQAQASGLRTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAVAVLITRRFHMALLVAVAVSALVSVSGVYASFYLDSAPAPTIVVLFAMVFIVTFVVTSVKARRQERVTAE
>CP029246.1|AXM00753.1|3385682_3386531_-|metal-ABC-transporter-permease
MNALLEPFGYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFLSGGLAAGSMLFLNQRSRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIAPEDIVQLAIIGVVSIVILLFKWKDLMVTFFDENHARAIGLRPERLKILFFTLLAVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLMIAVAIGSITSFLGAWASYYLDGATGGIIVVAQTLLFLLAFVFAPKHGLLASRRRAREAHP
>CP029246.1|AXM00754.1|3386527_3387334_-|manganese/iron-ABC-transporter-ATP-binding-protein
MQKGIVVTDVTVTYRNGHTALRDASFSVPGGSIAALVGVNGSGKSTLFKAVMGFVRAASGTISILGLPPHRALRQNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGFLRRPKECDKQIVTDALKRVDMLELRHRQIGELSGGQKKRVFLARAIAQQGEVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTDITFTAENLERAFSGVLRHVVLSGSEDRIITDDERPFVAHRQEAK
>CP029246.1|AXM00755.1|3387336_3388248_-|metal-ABC-transporter-substrate-binding-protein
MHPRQGLKRLLLGALLMTATTTGALAAEKFQVITTFTVIADMAKNVAGDAAEVTSITKPGAEIHEYQPTPGDIKRAQKAQLILANGMNLELWFQRFYQHLNGVPEVIVTKGITPMGISEGPYNGKPNPHAWMSPDNALIYVDNIRDALVKYDPANAQTYQRNADAYKQKITATLEPLRKQVAEIPEDKRWMVTSEGAFSYQARDLGLKELYLWPINADQQGTPQQVRKVIDLVKKHHIPAVFSESTVSDKPARQVARETGAHYGGVLYVDSLSAENGPVPTYIDLLNVTTRTLVQGIRDGMKE
>CP029246.1|AXM00756.1|3388459_3388744_-|transcriptional-regulator
MSIFNELKSSLEEAVQIHNGRKAASRVTRYEVADVRAIREQLNITQSEMAKALGTSVDTIKSWESKRRNPTGLAAKVLNVIRENPAFYKALAGQ
>CP029246.1|AXM02091.1|3388746_3389133_-|addiction-module-toxin-RelE
MSHAIEFIETSLFTRQIKSIATDDELKDLQKELIAWPDKGDLIQQTGGLRKIRMAAGSKGKRGGIRVIYFLATEEVIYFIMAYPKCIKDSLTETEKAELKKLTSILKNTASSAVNLRCTMYPNQAGGG
>CP029246.1|AXM00757.1|3389271_3391305_-|high-affinity-choline-transporter-BetT
MTDLSQDREKDKINPVVFYTSAGLILLFSLTTIFFRDFSAEWIGRTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTMEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKKINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPTEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVMGTLIIPFTFTLLWLSIFGNSALHEIIHGNATFAQEAMAHPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRIFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRVSASRDTAPRPLGAQDRLSWKKRLSRLMNYPGTRYTKQMMETVCFPAMEEVAQELRLRGAYVELKNLPPEEGENLGHLDLLVHMGDEQNFVYQIWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGNSVMFPDV
>CP029246.1|AXM00758.1|3391433_3392021_+|transcriptional-regulator-BetI
MPKVGMQPIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYFKDKNGLLEATMRDITGQLRDAVLSRLRALPDGSAEQRLQAIVGGNFDETQVSGAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVYEFRRELPREQAEEAGYGLAALIDGLWLRAALSGKPLDKTLAQSLTSHFISQHLPTD
>CP029246.1|AXM00759.1|3392034_3393507_+|betaine-aldehyde-dehydrogenase
MSRMAEQQLYINGGYTSATSGRTFETINPANGEVLATVQAAGREDVDRAVESAKRGQKIWAAMTAMERSRILRRAVDILRERNDELATLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLRDTSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPAKFKAAFEQKIVERVGRIRAGDLFDEATNFGPMVSFPHRDSVMRYIAKGKEEGARVLCGGDVLKGEGFDNGAWVAPTVFTDCTDEMTIVREEIFGPVMSILTYESIEEAIRRANDTDYGLAAGIVTTDLNRAHGAIHQLEAGICWINTWGESAAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMGKFQSIF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

599668 : 671267

Salmonella_phage(50.0%)

tail,plate,capsid,lysis,tRNA,terminase,integrase,head,portal

attL 588582:588612|attR 676959:676989

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
588582:588612	attL	NA	NA	NA	NA
AXL98181.1\|599668_600670_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.0e-191	98.2
AXL98182.1\|600669_601245_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	3.1e-60	58.7
AXL98183.1\|601374_601638_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
AXL98184.1\|601668_602178_+	hypothetical protein	A0A0M4QWN1	Salmonella_phage	2.0e-87	96.4
AXL98185.1\|602185_602386_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	3.3e-30	93.9
AXL98186.1\|602349_602688_+	hypothetical protein	A0A218M4I7	Erwinia_phage	1.6e-53	93.8
AXL98187.1\|602755_602983_+	DUF2732 domain-containing protein	A0A218M4I9	Erwinia_phage	5.8e-31	96.0
AXL98188.1\|602982_603204_+	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	1.0e-32	91.8
AXL98189.1\|603205_605422_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	93.8
AXL98190.1\|605540_605981_+	DinI family protein	A0A218M4I0	Erwinia_phage	1.0e-68	96.4
AXL98191.1\|606063_606795_+	hypothetical protein	Q37850	Escherichia_phage	2.1e-130	95.1
AXL98192.1\|606791_606983_-	hypothetical protein	A0A0M4R4Y4	Salmonella_phage	3.8e-07	83.3
AXL98193.1\|606968_607151_+	hypothetical protein	NA	NA	NA	NA
AXM01990.1\|607328_608333_-	hypothetical protein	NA	NA	NA	NA
AXL98194.1\|608410_609457_-\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	1.2e-190	95.1
AXL98195.1\|609458_611228_-	oxidoreductase	A0A218M4M1	Erwinia_phage	0.0e+00	99.5
AXL98196.1\|611393_612248_+\|capsid	capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.8e-157	98.2
AXL98197.1\|612323_613391_+\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	2.3e-194	97.7
AXL98198.1\|613395_614145_+\|terminase	terminase	A0A218M4L0	Erwinia_phage	1.1e-113	96.0
AXL98199.1\|614238_614748_+\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	4.3e-90	98.2
AXL98200.1\|614747_614951_+\|tail	phage tail protein	A0A218M4L8	Erwinia_phage	2.6e-30	95.5
AXL98201.1\|614941_615163_+	primosomal protein	A0A218M4L5	Erwinia_phage	8.4e-35	98.6
AXL98202.1\|615146_615659_+	lysozyme	A0A218M4K3	Erwinia_phage	7.8e-92	97.6
AXL98203.1\|615655_616087_+	lysA protein	A0A218M4L6	Erwinia_phage	1.8e-65	86.0
AXL98204.1\|616086_616497_+\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	4.2e-64	93.4
AXL98205.1\|616468_616642_+\|lysis	phage lysis protein	O80311	Escherichia_phage	1.8e-24	96.5
AXL98206.1\|616604_617072_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	1.4e-84	100.0
AXL98207.1\|617064_617514_+	phage virion morphogenesis protein	O80313	Escherichia_phage	8.7e-71	96.6
AXL98208.1\|617582_618218_+\|plate	phage baseplate assembly protein V	A0A2I8TV69	Erwinia_phage	7.2e-111	98.1
AXL98209.1\|618214_618562_+\|plate	baseplate assembly protein	A0A218M4K8	Erwinia_phage	8.0e-56	97.4
AXL98210.1\|618568_619477_+\|plate	baseplate assembly protein	Q6K1H4	Salmonella_virus	1.0e-139	85.4
AXL98211.1\|619469_620000_+\|tail	phage tail protein I	Q37841	Escherichia_phage	1.3e-89	86.4
AXL98212.1\|620011_622042_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	1.5e-90	80.0
AXL98213.1\|622053_622458_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	2.6e-21	44.0
AXL98214.1\|622581_623769_+\|tail	phage tail protein	Q37844	Escherichia_phage	1.0e-214	96.5
AXL98215.1\|623784_624303_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	99.4
AXL98216.1\|624365_624701_+\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	5.2e-52	98.2
AXL98217.1\|624715_624853_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.2e-18	97.8
AXL98218.1\|624845_627287_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	94.6
AXL98219.1\|627299_627785_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	4.1e-82	95.7
AXL98220.1\|627781_628951_+	phage late control D family protein	A0A218M4J7	Erwinia_phage	1.2e-207	97.2
AXL98221.1\|629017_629236_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.3e-39	100.0
AXL98222.1\|629479_630565_-\|integrase	integrase	F1BUS9	Erwinia_phage	2.6e-121	60.5
AXL98223.1\|630587_631202_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-34	39.0
AXL98224.1\|631302_631539_+	regulator	NA	NA	NA	NA
AXL98225.1\|631573_632083_+	hypothetical protein	A0A1S6L008	Salmonella_phage	7.6e-79	86.4
AXL98226.1\|632090_632315_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.8e-24	73.0
AXL98227.1\|632304_632505_+	hypothetical protein	A0A0M5M7U3	Salmonella_phage	4.3e-22	70.8
AXL98228.1\|632574_632808_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.3e-19	68.8
AXL98229.1\|632807_633035_+	hypothetical protein	E5G6L7	Salmonella_phage	5.4e-29	80.0
AXL98230.1\|633031_633904_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.1e-106	69.3
AXL98231.1\|637182_637878_+	DNA adenine methylase	A0A0M4S5U3	Salmonella_phage	7.9e-95	75.0
AXL98232.1\|638038_638227_+	hypothetical protein	A0A1S6L006	Salmonella_phage	3.7e-23	90.0
AXL98233.1\|638237_638471_+	DinI family protein	A0A1S6L014	Salmonella_phage	5.4e-32	88.3
AXL98234.1\|638757_638976_+	multidrug ABC transporter ATPase	NA	NA	NA	NA
AXL98235.1\|638975_639818_+	hypothetical protein	A0A0M4R2T6	Salmonella_phage	2.9e-59	47.7
AXL98236.1\|639827_640061_+	hypothetical protein	NA	NA	NA	NA
AXL98237.1\|640030_641776_+	DUF262 domain-containing protein	NA	NA	NA	NA
AXL98238.1\|641812_642874_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	4.5e-158	81.8
AXL98239.1\|642873_644637_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	3.2e-312	87.7
AXL98240.1\|644786_645614_+\|capsid	capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.1e-74	67.4
AXL98241.1\|645629_646778_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.9e-130	67.0
AXL98242.1\|646781_647435_+	hypothetical protein	E5G6M7	Salmonella_phage	3.0e-56	56.1
AXL98243.1\|647533_648001_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.3e-48	58.7
AXL98244.1\|648000_648204_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AXL98245.1\|648207_648423_+	hypothetical protein	E5G6N0	Salmonella_phage	2.0e-20	66.2
AXL98246.1\|648403_648919_+	lysozyme	E5G6N1	Salmonella_phage	2.4e-72	75.9
AXL98247.1\|648915_649344_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.2e-56	84.3
AXL98248.1\|649273_649477_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.8e-28	91.0
AXL98249.1\|649439_649871_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	3.5e-69	89.5
AXL98250.1\|649863_650310_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.7e-58	78.4
AXL98251.1\|650378_650957_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.0e-104	96.4
AXL98252.1\|650953_651313_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.3e-53	89.8
AXL98253.1\|651299_652208_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	8.0e-148	92.4
AXL98254.1\|652200_652806_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.8e-111	93.5
AXL98255.1\|654289_654763_+\|tail	phage tail protein	F1BUP0	Erwinia_phage	6.6e-53	59.6
AXL98256.1\|655193_655529_-	hypothetical protein	A0A0F7LBW5	Escherichia_phage	1.9e-06	65.8
AXL98257.1\|656026_656614_+	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.1e-84	85.8
AXL98258.1\|656672_657425_+	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	1.5e-62	50.6
AXL98259.1\|657505_658678_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	9.5e-210	92.8
AXL98260.1\|658687_659203_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	7.6e-87	93.0
AXL98261.1\|659257_659560_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.1e-40	90.0
AXL98262.1\|659574_659694_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	3.3e-14	92.3
AXL98263.1\|659686_663130_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	72.4
AXL98264.1\|663129_663615_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.0e-69	90.1
AXL98265.1\|663611_664712_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	7.1e-183	91.8
AXM01991.1\|664781_665000_+	levansucrase regulator	Q53ZE7	Salmonella_virus	1.6e-25	72.2
AXL98266.1\|665336_665843_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
AXL98267.1\|665943_667788_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
AXL98268.1\|667940_669686_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-76	39.0
AXL98269.1\|669801_670017_-	30S ribosomal protein S21	NA	NA	NA	NA
AXL98270.1\|670253_671267_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.3e-109	58.9
676959:676989	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1028467 : 1128662

114

Escherichia_phage(20.59%)

protease,tail,plate,holin,capsid,lysis,tRNA,terminase,integrase,head,portal

attL 1096250:1096265|attR 1124982:1124997

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL98603.1\|1028467_1031095_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-81	39.2
AXL98604.1\|1031336_1031522_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
AXL98605.1\|1032712_1033279_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
AXL98606.1\|1033275_1033704_+	DedA family protein	NA	NA	NA	NA
AXL98607.1\|1033787_1035332_+	glutamate--cysteine ligase	NA	NA	NA	NA
AXL98608.1\|1035484_1036000_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
AXM01998.1\|1036053_1036818_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXL98609.1\|1036804_1038460_-	2-isopropylmalate synthase	NA	NA	NA	NA
AXL98610.1\|1038626_1040174_-	multidrug efflux MFS transporter subunit EmrB	NA	NA	NA	NA
AXL98611.1\|1040190_1041363_-	multidrug export protein EmrA	NA	NA	NA	NA
AXL98612.1\|1041493_1042024_-	transcriptional repressor MprA	NA	NA	NA	NA
AXL98613.1\|1042338_1043523_-	MFS transporter	NA	NA	NA	NA
AXL98614.1\|1043713_1044709_-	proline/glycine betaine ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
AXL98615.1\|1044718_1045783_-	proline/glycine betaine ABC transporter permease ProW	NA	NA	NA	NA
AXL98616.1\|1045775_1046978_-	proline/glycine betaine ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	3.2e-27	38.3
AXL98617.1\|1047311_1048271_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	5.7e-136	72.1
AXL98618.1\|1048280_1050425_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	7.8e-202	48.8
AXL98619.1\|1050397_1050808_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	3.0e-17	44.3
AXL98620.1\|1050804_1051044_-	NrdH-redoxin	A0A0M7REK7	Lactobacillus_phage	9.8e-13	43.2
AXL98621.1\|1051287_1051614_-	DUF883 domain-containing protein	NA	NA	NA	NA
AXL98622.1\|1051772_1052117_+	DUF2002 domain-containing protein	NA	NA	NA	NA
AXL98623.1\|1052149_1052599_-	L-alanine exporter AlaE	NA	NA	NA	NA
AXL98624.1\|1053095_1053500_+	DNA-binding protein StpA	NA	NA	NA	NA
AXL98625.1\|1053537_1053717_-	hypothetical protein	NA	NA	NA	NA
AXL98626.1\|1053799_1054318_-	DUF2892 domain-containing protein	NA	NA	NA	NA
AXL98627.1\|1054497_1054656_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
AXL98628.1\|1054652_1055582_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXL98629.1\|1055902_1056508_+	ankyrin repeat domain-containing protein	Q6VZ28	Canarypox_virus	1.6e-06	25.2
AXL98630.1\|1056616_1058158_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
AXM01999.1\|1058154_1059573_+	DUF1116 domain-containing protein	NA	NA	NA	NA
AXL98631.1\|1059584_1061165_+	xanthine permease	NA	NA	NA	NA
AXL98632.1\|1061161_1062118_+	carbamate kinase	NA	NA	NA	NA
AXL98633.1\|1062119_1063499_+	deaminase	NA	NA	NA	NA
AXL98634.1\|1065162_1066011_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	6.4e-139	92.5
AXL98635.1\|1066020_1067232_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	5.8e-194	85.7
AXL98636.1\|1067275_1067602_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	6.1e-50	85.2
AXL98637.1\|1067598_1067943_+\|head,tail	head-tail adaptor protein	Q7Y406	Yersinia_phage	1.1e-25	57.3
AXL98638.1\|1067923_1068307_+	hypothetical protein	Q6UAX2	Klebsiella_phage	2.8e-41	57.5
AXL98639.1\|1068309_1068714_+	hypothetical protein	Q6UAX1	Klebsiella_phage	9.7e-45	72.7
AXL98640.1\|1068746_1069199_+\|tail	phage tail protein	Q7Y403	Yersinia_phage	9.1e-60	76.7
AXL98641.1\|1069262_1069625_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.1e-26	55.2
AXM02000.1\|1069645_1069864_+	hypothetical protein	Q6UAW9	Klebsiella_phage	2.0e-20	59.7
AXL98642.1\|1069863_1073193_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	66.5
AXL98643.1\|1073195_1073534_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	9.2e-49	77.7
AXL98644.1\|1073530_1074286_+\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.0e-135	92.4
AXL98645.1\|1074287_1074998_+	peptidase P60	K7PJV6	Enterobacteria_phage	1.5e-141	96.2
AXL98646.1\|1075026_1075374_+	hypothetical protein	NA	NA	NA	NA
AXL98647.1\|1075400_1075991_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	3.8e-90	85.2
AXL98648.1\|1076045_1079843_+	DUF1983 domain-containing protein	K7PHL5	Enterobacterial_phage	0.0e+00	83.5
AXL98649.1\|1079886_1080201_+	hypothetical protein	A0A2P0WA17	Enterobacter_phage	6.4e-36	71.6
AXL98650.1\|1080201_1080873_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	1.1e-85	70.9
AXL98651.1\|1080980_1081214_+	cor protein	E4WL42	Enterobacteria_phage	2.5e-29	75.3
AXL98652.1\|1081271_1082399_+\|tail	tail fiber domain-containing protein	A0A2I6PID3	Escherichia_phage	2.1e-52	37.3
AXL98653.1\|1082652_1083006_-	hypothetical protein	NA	NA	NA	NA
AXL98654.1\|1083769_1084192_+	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	47.2
AXL98655.1\|1084278_1084518_-	DinI family protein	K7PKM2	Enterobacterial_phage	2.2e-33	89.9
AXL98656.1\|1085241_1085724_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	6.8e-29	46.8
AXL98657.1\|1085841_1086318_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AXL98658.1\|1086307_1086595_+	RnfH family protein	NA	NA	NA	NA
AXL98659.1\|1086656_1086995_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXL98660.1\|1086976_1087159_-	hypothetical protein	NA	NA	NA	NA
AXL98661.1\|1087133_1088795_-	DNA repair protein RecN	NA	NA	NA	NA
AXL98662.1\|1088880_1089759_-	NAD(+) kinase	NA	NA	NA	NA
AXL98663.1\|1089857_1090475_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXL98664.1\|1090527_1091814_-	DUF21 domain-containing protein	NA	NA	NA	NA
AXM02001.1\|1091833_1092625_-	inner membrane protein YpjD	NA	NA	NA	NA
AXL98665.1\|1092791_1094153_+	signal recognition particle protein	NA	NA	NA	NA
AXL98666.1\|1094269_1094518_+	30S ribosomal protein S16	NA	NA	NA	NA
AXL98667.1\|1094533_1095073_+	ribosome maturation factor RimM	NA	NA	NA	NA
AXL98668.1\|1095104_1095872_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXL98669.1\|1095915_1096263_+	50S ribosomal protein L19	NA	NA	NA	NA
1096250:1096265	attL	NA	NA	NA	NA
AXL98670.1\|1096422_1096641_-	transcriptional regulator	Q37973	Salmonella_virus	2.1e-30	80.6
AXL98671.1\|1096718_1097864_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	3.8e-155	78.6
AXL98672.1\|1097863_1098343_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	2.6e-73	84.3
AXL98673.1\|1098358_1100902_-\|tail	phage tail tape measure protein	F1BUT7	Erwinia_phage	1.2e-217	70.2
AXL98674.1\|1100894_1101014_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	6.7e-15	92.3
AXL98675.1\|1101046_1101322_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.8e-35	83.5
AXL98676.1\|1101383_1101902_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	4.5e-87	90.7
AXL98677.1\|1101915_1103106_-\|tail	phage tail protein	Q7Y4D1	Escherichia_virus	4.5e-207	89.9
AXL98678.1\|1103230_1103635_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	2.6e-29	51.1
AXL98679.1\|1103646_1105833_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	4.8e-90	80.5
AXL98680.1\|1105844_1106375_-\|tail	phage tail protein I	Q37841	Escherichia_phage	2.6e-90	85.8
AXL98681.1\|1106367_1107276_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	1.1e-133	81.1
AXL98682.1\|1107279_1107627_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	3.8e-42	74.8
AXL98683.1\|1107623_1108265_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	8.9e-93	80.3
AXL98684.1\|1108333_1108783_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.8e-47	66.0
AXL98685.1\|1108775_1109243_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.2e-72	85.8
AXM02002.1\|1109205_1109448_-\|holin	holin	S4TNY4	Salmonella_phage	1.7e-25	69.6
AXL98686.1\|1109350_1109764_-\|lysis	LysB family phage lysis regulatory protein	A0A0F7LDJ6	Escherichia_phage	7.1e-43	68.6
AXL98687.1\|1109760_1110258_-	lysozyme	O80309	Escherichia_phage	2.4e-85	91.4
AXL98688.1\|1110244_1110541_-\|holin	holin	O80308	Escherichia_phage	2.3e-40	88.8
AXL98689.1\|1110545_1110749_-\|tail	phage tail protein	Q858W3	Yersinia_virus	1.6e-24	82.1
AXL98690.1\|1110748_1111249_-\|head	head completion/stabilization protein	A0A0F7L9Y3	Escherichia_phage	1.8e-56	67.4
AXL98691.1\|1111348_1112110_-\|terminase	terminase	A0A218M4L0	Erwinia_phage	7.3e-78	66.8
AXL98692.1\|1112113_1113187_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	1.6e-158	79.3
AXL98693.1\|1113247_1114102_-\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	3.4e-108	70.1
AXL98694.1\|1114267_1116037_+	oxidoreductase	A0A218M4M1	Erwinia_phage	6.5e-303	85.9
AXL98695.1\|1116038_1117061_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	6.0e-168	83.6
AXL98696.1\|1117760_1117994_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	1.8e-35	96.1
AXL98697.1\|1117997_1118180_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	6.5e-17	70.7
AXL98698.1\|1118395_1118623_+	hypothetical protein	NA	NA	NA	NA
AXL98699.1\|1118641_1121035_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	85.8
AXL98700.1\|1121012_1121294_-	hypothetical protein	A0A218M4I8	Erwinia_phage	1.5e-28	69.9
AXL98701.1\|1121294_1121522_-	DUF2732 domain-containing protein	A0A218M4I9	Erwinia_phage	2.6e-15	61.3
AXL98702.1\|1121587_1121926_-	hypothetical protein	A0A218M4I7	Erwinia_phage	2.4e-41	75.9
AXL98703.1\|1121889_1122090_-	DUF2724 domain-containing protein	A0A218M4I1	Erwinia_phage	5.7e-22	75.8
AXL98704.1\|1122097_1122607_-	hypothetical protein	Q6K1F8	Salmonella_virus	1.9e-77	85.8
AXL98705.1\|1122638_1122869_-	hypothetical protein	NA	NA	NA	NA
AXL98706.1\|1122988_1123849_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	3.5e-68	43.8
AXL98707.1\|1123851_1124883_+\|integrase	integrase	A0A0M4S6G4	Salmonella_phage	1.4e-164	79.8
AXL98708.1\|1125127_1125532_+	DUF2946 domain-containing protein	NA	NA	NA	NA
1124982:1124997	attR	NA	NA	NA	NA
AXL98709.1\|1125570_1126941_+	PepSY domain-containing protein	NA	NA	NA	NA
AXL98710.1\|1126943_1127429_-	OmpA family protein	NA	NA	NA	NA
AXL98711.1\|1127441_1128662_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	1.2e-05	39.8

DBSCAN-SWA_3

1613238 : 1622088

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL99122.1\|1613238_1614303_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.4
AXL99123.1\|1614318_1615185_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.8e-110	66.3
AXL99124.1\|1615197_1616088_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	4.8e-28	31.3
AXL99125.1\|1616098_1616647_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.1e-54	54.4
AXL99126.1\|1616782_1618189_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	5.2e-37	28.3
AXL99127.1\|1618442_1619609_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.2e-111	53.5
AXL99128.1\|1621083_1622088_-	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	3.3e-33	29.0

DBSCAN-SWA_4

1723110 : 1743228

Pectobacterium_phage(33.33%)

integrase,holin

attL 1717500:1717515|attR 1752369:1752384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1717500:1717515	attL	NA	NA	NA	NA
AXL99218.1\|1723110_1724127_-\|integrase	integrase	H9C152	Pectobacterium_phage	2.8e-125	64.0
AXL99219.1\|1724110_1724359_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	6.4e-07	39.5
AXL99220.1\|1724294_1724519_-	hypothetical protein	H9C154	Pectobacterium_phage	1.7e-11	56.3
AXL99221.1\|1724569_1724752_-	hypothetical protein	NA	NA	NA	NA
AXL99222.1\|1724754_1725315_-	hypothetical protein	H9C156	Pectobacterium_phage	2.9e-47	56.3
AXM02021.1\|1725311_1727504_-	hypothetical protein	H9C157	Pectobacterium_phage	6.5e-103	35.9
AXL99223.1\|1727554_1727878_-	hypothetical protein	NA	NA	NA	NA
AXM02022.1\|1728429_1728843_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.0e-37	61.9
AXL99224.1\|1728911_1729106_+	hypothetical protein	NA	NA	NA	NA
AXL99225.1\|1730332_1731091_+	hypothetical protein	NA	NA	NA	NA
AXL99226.1\|1731090_1731501_+	hypothetical protein	NA	NA	NA	NA
AXL99227.1\|1731561_1731903_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	3.7e-21	51.8
AXL99228.1\|1731899_1733510_+	transcriptional regulator	A0A2H4JCA3	uncultured_Caudovirales_phage	8.4e-225	70.3
AXL99229.1\|1733530_1735777_+	hypothetical protein	A0A0F6TJC8	Escherichia_coli_O157_typing_phage	3.8e-66	46.0
AXL99230.1\|1735806_1737288_-	hypothetical protein	NA	NA	NA	NA
AXL99231.1\|1737284_1738226_-	glycosyltransferase	U5P087	Shigella_phage	5.5e-160	91.7
AXL99232.1\|1738222_1738585_-	GtrA family protein	B9UDL8	Salmonella_phage	3.5e-46	75.0
AXL99233.1\|1738734_1738965_+\|holin	holin	A5LH82	Enterobacteria_phage	2.9e-22	71.0
AXL99234.1\|1738945_1739485_+	lysozyme	H6WRZ4	Salmonella_phage	2.2e-92	89.3
AXL99235.1\|1739481_1739841_+	hypothetical protein	R9TPM9	Aeromonas_phage	2.4e-15	45.5
AXL99236.1\|1740412_1740514_+	DNA invertase	NA	NA	NA	NA
AXL99237.1\|1740592_1740916_+	hypothetical protein	NA	NA	NA	NA
AXL99238.1\|1740945_1741872_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXL99239.1\|1741877_1742348_-	hypothetical protein	NA	NA	NA	NA
AXL99240.1\|1742511_1743228_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-12	28.5
1752369:1752384	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1790703 : 1841715

Enterobacteria_phage(23.4%)

protease,tail,holin,capsid,tRNA,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL99283.1\|1790703_1792437_-\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	8.8e-87	37.0
AXL99284.1\|1792675_1793236_+	VOC family protein	NA	NA	NA	NA
AXL99285.1\|1793314_1794058_+	copper homeostasis protein CutC	NA	NA	NA	NA
AXL99286.1\|1794038_1794422_+	hypothetical protein	NA	NA	NA	NA
AXL99287.1\|1794318_1795290_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AXL99288.1\|1795286_1796030_-	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A1S6L2V9	Erwinia_phage	6.1e-29	30.2
AXL99289.1\|1796070_1796466_-	hypothetical protein	NA	NA	NA	NA
AXL99290.1\|1796517_1797291_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	8.6e-58	80.3
AXL99291.1\|1797269_1798583_-	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	2.7e-221	86.0
AXL99292.1\|1798638_1798875_-	excisionase	Q8W657	Enterobacteria_phage	8.1e-36	85.9
AXL99293.1\|1798917_1799745_-\|protease	serine protease	Q8W654	Enterobacteria_phage	5.5e-111	84.4
AXL99294.1\|1799741_1799936_-	hypothetical protein	NA	NA	NA	NA
AXL99295.1\|1799935_1800343_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	6.1e-23	48.5
AXL99296.1\|1800339_1800561_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.4e-18	66.7
AXM02025.1\|1800560_1800917_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.1e-47	88.3
AXL99297.1\|1800897_1801101_-	hypothetical protein	NA	NA	NA	NA
AXL99298.1\|1801237_1801897_-	AP2 domain-containing protein	L0AQZ0	Klebsiella_phage	2.4e-45	44.0
AXL99299.1\|1802387_1802600_-	hypothetical protein	NA	NA	NA	NA
AXL99300.1\|1802790_1803480_-	helix-turn-helix domain-containing protein	K7PK07	Enterobacteria_phage	4.6e-71	64.8
AXL99301.1\|1803591_1803819_+	transcriptional regulator	NA	NA	NA	NA
AXL99302.1\|1803844_1804141_+	transcriptional regulator	NA	NA	NA	NA
AXL99303.1\|1804137_1805049_+	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	1.1e-91	60.2
AXL99304.1\|1805064_1805946_+	AAA family ATPase	Q8W641	Enterobacteria_phage	2.0e-79	62.0
AXL99305.1\|1805942_1807322_+	helicase	Q8W640	Enterobacteria_phage	3.2e-172	67.5
AXL99306.1\|1807349_1808132_+	antitermination protein	F1C595	Cronobacter_phage	1.3e-109	76.4
AXL99307.1\|1808330_1808912_+	endonuclease	A0A2I7RSG2	Vibrio_phage	7.2e-25	43.2
AXL99308.1\|1808958_1809186_-	hypothetical protein	NA	NA	NA	NA
AXL99309.1\|1809691_1810081_+	hypothetical protein	G8C7V8	Escherichia_phage	8.9e-64	99.2
AXL99310.1\|1810070_1810349_+\|holin	phage holin family protein	G8C7V9	Escherichia_phage	4.7e-43	97.8
AXL99311.1\|1810348_1810891_+	hypothetical protein	A0A0U2I1S0	Escherichia_phage	6.2e-79	74.3
AXL99312.1\|1810887_1811163_+	hypothetical protein	G8C7W1	Escherichia_phage	1.0e-29	80.2
AXL99313.1\|1811113_1811293_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.0e-19	80.0
AXM02026.1\|1811359_1811617_+	hypothetical protein	G8C7W3	Escherichia_phage	5.1e-15	52.7
AXL99314.1\|1811855_1812320_-\|protease	retroviral-like aspartic protease	NA	NA	NA	NA
AXL99315.1\|1812580_1813378_+	DUF1983 domain-containing protein	S4TNN5	Salmonella_phage	3.5e-54	52.8
AXL99316.1\|1813380_1813614_+	hypothetical protein	NA	NA	NA	NA
AXL99317.1\|1813654_1815112_+	glycosyltransferase	K7PKP3	Enterobacterial_phage	7.3e-276	93.2
AXL99318.1\|1815071_1815749_+	HNH endonuclease	A0A1W6DXY0	Salmonella_phage	1.7e-14	37.0
AXM02027.1\|1816315_1816684_+	HNH endonuclease	S4TTG9	Salmonella_phage	1.9e-55	86.9
AXL99319.1\|1816791_1817286_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
AXL99320.1\|1817282_1818944_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.7
AXL99321.1\|1819002_1820937_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	98.3
AXL99322.1\|1821140_1822499_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	8.6e-247	93.1
AXL99323.1\|1822495_1823539_+\|portal	phage portal protein	S4TNN1	Salmonella_phage	1.2e-102	83.9
AXL99324.1\|1823535_1823862_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	5.8e-48	89.8
AXL99325.1\|1823870_1824221_+\|head,tail	head-tail adaptor protein	S4TND9	Salmonella_phage	1.7e-53	90.5
AXL99326.1\|1824217_1824667_+	hypothetical protein	K7P6X4	Enterobacteria_phage	2.2e-74	98.7
AXL99327.1\|1824663_1825011_+	DUF3168 domain-containing protein	K7PM93	Enterobacterial_phage	5.5e-57	96.5
AXL99328.1\|1825070_1825514_+	hypothetical protein	K7PHL2	Enterobacterial_phage	1.6e-72	94.5
AXL99329.1\|1825522_1825906_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	1.3e-62	92.9
AXL99330.1\|1825914_1826193_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	8.1e-43	96.7
AXM02028.1\|1826244_1826538_+	hypothetical protein	NA	NA	NA	NA
AXL99331.1\|1826596_1829899_+\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	81.6
AXL99332.1\|1829901_1830240_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	7.3e-38	59.8
AXL99333.1\|1830236_1830995_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.5e-94	63.2
AXL99334.1\|1830997_1831708_+	peptidase P60	F1C573	Cronobacter_phage	1.3e-97	70.2
AXL99335.1\|1831707_1832295_+\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	4.7e-48	47.4
AXL99336.1\|1832347_1836187_+	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	61.5
AXL99337.1\|1836188_1837154_+	hypothetical protein	G1CSU0	Cronobacter_virus	8.2e-58	40.2
AXM02029.1\|1837773_1838352_+\|tail	tail fiber domain-containing protein	A0A2I6PD03	Escherichia_phage	9.3e-33	54.4
AXL99338.1\|1838482_1838749_-	DinI family protein	K7PKM2	Enterobacterial_phage	1.4e-39	94.3
AXL99339.1\|1839113_1839680_-	hydrolase	NA	NA	NA	NA
AXL99340.1\|1839942_1841715_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_6

2057579 : 2111325

Escherichia_phage(23.68%)

tail,protease,plate,holin,capsid,lysis,terminase,integrase,head,portal

attL 2048081:2048095|attR 2074719:2074733

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2048081:2048095	attL	NA	NA	NA	NA
AXL99524.1\|2057579_2058590_-\|integrase	integrase	Q83VS6	Escherichia_phage	2.1e-149	76.7
AXL99525.1\|2058686_2058983_-	XRE family transcriptional regulator	Q1JS61	Enterobacteria_phage	9.6e-34	70.1
AXL99526.1\|2059118_2059394_+	hypothetical protein	Q1JS60	Enterobacteria_phage	3.7e-40	82.2
AXL99527.1\|2059560_2060061_+	replication protein B	M1SV55	Escherichia_phage	4.8e-70	75.3
AXL99528.1\|2060127_2060346_+	DUF2732 domain-containing protein	S4TP68	Salmonella_phage	2.2e-11	62.1
AXL99529.1\|2060368_2060632_+	hypothetical protein	U5N3W1	Enterobacteria_phage	6.7e-23	60.5
AXL99530.1\|2060633_2062931_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	74.9
AXM02038.1\|2063063_2063291_+	hypothetical protein	Q6K1F0	Salmonella_virus	9.3e-13	60.0
AXL99531.1\|2063404_2063914_+	hypothetical protein	NA	NA	NA	NA
AXL99532.1\|2064191_2064506_+	hypothetical protein	NA	NA	NA	NA
AXL99533.1\|2064507_2065101_+	hypothetical protein	NA	NA	NA	NA
AXL99534.1\|2065352_2067011_+	DUF2326 domain-containing protein	NA	NA	NA	NA
AXL99535.1\|2067040_2068066_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	7.1e-169	83.6
AXL99536.1\|2068067_2069837_-	oxidoreductase	A0A218M4M1	Erwinia_phage	1.9e-302	85.7
AXL99537.1\|2070003_2070858_+\|capsid	capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.4e-117	73.6
AXL99538.1\|2070913_2072008_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	7.9e-166	81.1
AXL99539.1\|2072011_2072767_+\|terminase	terminase	Q6K1I5	Salmonella_virus	1.2e-80	68.5
AXL99540.1\|2072866_2073373_+\|head	head completion/stabilization protein	O80306	Escherichia_phage	8.3e-62	71.4
AXL99541.1\|2073372_2073576_+\|tail	phage tail protein	A0A218M4L8	Erwinia_phage	1.1e-25	80.6
AXL99542.1\|2073566_2073788_+	primosomal protein	A0A218M4L5	Erwinia_phage	1.4e-26	75.3
AXL99543.1\|2073771_2074281_+	lysozyme	A0A218M4K3	Erwinia_phage	4.9e-78	86.3
AXL99544.1\|2074277_2074703_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	3.0e-44	68.6
AXL99545.1\|2074590_2074836_+\|holin	holin	S4TNY4	Salmonella_phage	1.0e-28	77.8
2074719:2074733	attR	NA	NA	NA	NA
AXL99546.1\|2074798_2075266_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	1.3e-61	72.3
AXL99547.1\|2075258_2075717_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.1e-44	63.8
AXL99548.1\|2075809_2077333_-	ATP-binding protein	NA	NA	NA	NA
AXL99549.1\|2077614_2078256_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	1.3e-96	82.6
AXL99550.1\|2078252_2078603_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	6.9e-39	70.7
AXL99551.1\|2078608_2079517_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	1.7e-137	83.1
AXL99552.1\|2079509_2080040_+\|tail	phage tail protein I	Q37841	Escherichia_phage	5.3e-91	87.5
AXL99553.1\|2080051_2081884_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.2e-91	81.0
AXL99554.1\|2081886_2082402_+\|tail	tail assembly chaperone	F1BUK2	Cronobacter_phage	7.5e-18	38.3
AXL99555.1\|2082776_2083970_+\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.4e-184	81.1
AXL99556.1\|2083982_2084501_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	5.9e-79	82.0
AXL99557.1\|2084557_2084851_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.7e-27	72.4
AXL99558.1\|2084883_2085006_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	2.0e-14	92.3
AXL99559.1\|2084995_2087443_+\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	8.9e-218	57.8
AXL99560.1\|2087456_2087921_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	1.4e-60	74.8
AXL99561.1\|2087917_2089087_+	phage late control D family protein	Q6K1G4	Salmonella_virus	8.1e-161	74.6
AXL99562.1\|2089163_2089385_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.5e-25	72.9
AXL99563.1\|2089566_2090505_+	DUF2971 domain-containing protein	NA	NA	NA	NA
AXL99564.1\|2090668_2090965_-	hypothetical protein	NA	NA	NA	NA
AXL99565.1\|2091186_2091915_+	TonB system transport protein TonB	NA	NA	NA	NA
AXL99566.1\|2091953_2092349_-	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
AXL99567.1\|2092447_2094634_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
AXL99568.1\|2094814_2095354_-	septation protein A	NA	NA	NA	NA
AXL99569.1\|2095367_2096111_-	UPF0259 family protein	NA	NA	NA	NA
AXL99570.1\|2096136_2096541_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AXL99571.1\|2096823_2097456_+	outer membrane protein OmpW	NA	NA	NA	NA
AXL99572.1\|2097742_2097976_-	SirA-like protein	NA	NA	NA	NA
AXL99573.1\|2097972_2099184_-	YeeE/YedE family protein	NA	NA	NA	NA
AXL99574.1\|2099358_2100168_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
AXL99575.1\|2100167_2101361_-	tryptophan synthase subunit beta	NA	NA	NA	NA
AXL99576.1\|2101371_2102730_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	5.0e-37	41.0
AXL99577.1\|2102733_2104329_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.2e-50	37.3
AXL99578.1\|2104328_2105891_-	anthranilate synthase component 1	NA	NA	NA	NA
AXM02039.1\|2105985_2106030_-	trp operon leader peptide	NA	NA	NA	NA
AXL99579.1\|2106169_2107051_+	5'-3' exoribonuclease	NA	NA	NA	NA
AXL99580.1\|2107047_2107668_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AXL99581.1\|2107765_2108641_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
AXL99582.1\|2108677_2109268_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
AXL99583.1\|2109264_2110026_-	YciK family oxidoreductase	NA	NA	NA	NA
AXL99584.1\|2110278_2111325_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-19	29.2

DBSCAN-SWA_7

2488838 : 2495846

Escherichia_phage(100.0%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXL99911.1\|2488838_2489555_-	HNH endonuclease	A0A1I9SEA5	Escherichia_phage	1.0e-33	46.5
AXL99912.1\|2489723_2491088_-\|integrase	integrase	NA	NA	NA	NA
AXL99913.1\|2491319_2492429_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.5e-87	47.3
AXL99914.1\|2492439_2493057_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.0e-74	59.1
AXL99915.1\|2493058_2493913_+	dimethylsulfoxide reductase	A0A077SK59	Escherichia_phage	7.6e-23	34.6
AXL99916.1\|2493957_2494572_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	34.7
AXL99917.1\|2494681_2494993_+	DNA damage-inducible SOS regulon protein	NA	NA	NA	NA
AXL99918.1\|2495168_2495846_-	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	5.5e-77	62.1

DBSCAN-SWA_8

2672457 : 2713873

Escherichia_phage(30.56%)

tail,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXM00079.1\|2672457_2672922_-	endopeptidase	A0A1V0DZX6	Clostridioides_phage	2.3e-13	36.7
AXM00080.1\|2672994_2673750_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2K9L407	Tupanvirus	1.7e-10	26.2
AXM00081.1\|2673749_2674301_-	glutathione peroxidase	NA	NA	NA	NA
AXM00082.1\|2674684_2675356_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.4e-80	60.0
AXM00083.1\|2675422_2675830_-	tolA family protein	NA	NA	NA	NA
AXM00084.1\|2675972_2677241_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.4e-229	91.7
AXM00085.1\|2677240_2677561_-	hypothetical protein	K7PGV5	Enterobacterial_phage	3.3e-24	52.8
AXM00086.1\|2677560_2677800_-	hypothetical protein	K7P7N3	Enterobacteria_phage	9.1e-27	72.2
AXM00087.1\|2678170_2679298_-\|tail	tail fiber domain-containing protein	A0A2I6PID3	Escherichia_phage	5.6e-50	36.2
AXM00088.1\|2679356_2679590_-	cor protein	E4WL42	Enterobacteria_phage	3.9e-30	77.6
AXM00089.1\|2679697_2680369_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	2.2e-86	72.6
AXM00090.1\|2680369_2680684_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.3e-32	63.7
AXM00091.1\|2680727_2684594_-	DUF1983 domain-containing protein	G8C7R4	Escherichia_phage	0.0e+00	76.8
AXM00092.1\|2684649_2685249_-\|tail	tail assembly protein	G8C7R3	Escherichia_phage	1.9e-97	92.5
AXM00093.1\|2685236_2685968_-	peptidase P60	G8C7R2	Escherichia_phage	2.0e-149	96.3
AXM00094.1\|2685980_2686754_-\|tail	phage minor tail protein L	G8C7R1	Escherichia_phage	2.7e-144	95.7
AXM00095.1\|2686750_2687101_-	hypothetical protein	G8C7R0	Escherichia_phage	2.3e-55	92.2
AXM00096.1\|2687155_2687488_-	hypothetical protein	NA	NA	NA	NA
AXM00097.1\|2687484_2688450_-	hypothetical protein	J7I0T4	Pseudomonas_phage	1.3e-10	40.9
AXM00098.1\|2688515_2688740_-	hypothetical protein	NA	NA	NA	NA
AXM00099.1\|2688745_2690668_-\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.3e-150	48.5
AXM00100.1\|2690727_2691848_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
AXM00101.1\|2691897_2692260_-	hypothetical protein	NA	NA	NA	NA
AXM00102.1\|2692851_2693373_-	hypothetical protein	I6R9C4	Salmonella_phage	1.7e-30	45.0
AXM00103.1\|2693656_2693854_-	hypothetical protein	NA	NA	NA	NA
AXM00104.1\|2694592_2694898_-	hypothetical protein	A0A2H4A316	Salmonella_phage	2.8e-12	77.6
AXM00105.1\|2694894_2695365_-	hypothetical protein	NA	NA	NA	NA
AXM00106.1\|2695361_2695814_-	hypothetical protein	A0A076G839	Escherichia_phage	6.6e-10	40.3
AXM00107.1\|2695810_2696071_-	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	3.1e-28	72.3
AXM00108.1\|2696074_2696761_-	hypothetical protein	NA	NA	NA	NA
AXM00109.1\|2696772_2697465_-	phage replication protein	G8C7U6	Escherichia_phage	2.4e-80	60.9
AXM02060.1\|2697448_2698441_-	replication protein	A5VW95	Enterobacteria_phage	1.4e-49	75.0
AXM00110.1\|2698878_2699421_-	regulator	M9NZI6	Enterobacteria_phage	5.6e-48	55.6
AXM00111.1\|2699423_2699657_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	1.5e-18	59.5
AXM00112.1\|2699760_2700156_+	transcriptional regulator	K7PM35	Enterobacteria_phage	2.9e-46	71.8
AXM00113.1\|2700467_2700926_+	hypothetical protein	NA	NA	NA	NA
AXM00114.1\|2700912_2701293_+	hypothetical protein	NA	NA	NA	NA
AXM00115.1\|2701664_2702015_+	hypothetical protein	G8C7T6	Escherichia_phage	6.0e-27	51.7
AXM02061.1\|2702004_2702202_-	hypothetical protein	NA	NA	NA	NA
AXM00116.1\|2702216_2702402_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AXM00117.1\|2702655_2702943_+	DNA breaking-rejoining protein	H6WRX2	Salmonella_phage	4.2e-34	67.4
AXM00118.1\|2703065_2706134_+	exodeoxyribonuclease	K7PJT5	Enterobacteria_phage	0.0e+00	70.1
AXM02062.1\|2706145_2707258_+	enterohemolysin	H6WRX0	Salmonella_phage	1.7e-160	76.7
AXM00119.1\|2707292_2707532_+	DUF4060 domain-containing protein	M9P0E0	Enterobacteria_phage	2.1e-23	69.2
AXM00120.1\|2707596_2707812_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	2.2e-19	60.6
AXM00121.1\|2707811_2709032_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	9.8e-117	51.9
AXM00122.1\|2709098_2710079_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
AXM00123.1\|2710182_2710482_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
AXM00124.1\|2710486_2712874_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AXM00125.1\|2712889_2713873_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	9.9e-35	43.2

DBSCAN-SWA_9

2770112 : 2829441

Enterobacterial_phage(32.69%)

tail,protease,holin,capsid,tRNA,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXM00181.1\|2770112_2771396_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.1e-09	28.3
AXM00182.1\|2771658_2771979_-	hypothetical protein	K7PGV5	Enterobacterial_phage	8.2e-23	49.1
AXM00183.1\|2771978_2772218_-	hypothetical protein	K7P7N3	Enterobacteria_phage	8.8e-30	78.2
AXM00184.1\|2772317_2772584_+	DinI family protein	K7PKM2	Enterobacterial_phage	4.4e-38	92.0
AXM02067.1\|2772715_2773078_-\|tail	tail fiber domain-containing protein	A0A2I6PD03	Escherichia_phage	3.1e-26	57.0
AXM00185.1\|2773901_2774135_-	cor protein	E4WL42	Enterobacteria_phage	3.9e-30	77.6
AXM00186.1\|2774242_2774914_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	2.2e-86	72.6
AXM00187.1\|2774914_2775229_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.3e-32	63.7
AXM02068.1\|2775272_2779121_-	DUF1983 domain-containing protein	Q9MCU0	Escherichia_phage	0.0e+00	61.1
AXM00188.1\|2779174_2779759_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	9.7e-54	52.1
AXM00189.1\|2779758_2780469_-	peptidase P60	F1C573	Cronobacter_phage	5.0e-97	69.8
AXM00190.1\|2780471_2781230_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	3.9e-95	63.6
AXM00191.1\|2781226_2781565_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	4.7e-37	58.9
AXM00192.1\|2785105_2785441_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	4.0e-52	93.7
AXM00193.1\|2785496_2785775_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	6.2e-43	96.7
AXM00194.1\|2785783_2786167_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
AXM00195.1\|2786175_2786619_-	hypothetical protein	K7PHL2	Enterobacterial_phage	3.9e-71	92.4
AXM00196.1\|2786678_2787026_-	DUF3168 domain-containing protein	K7PM93	Enterobacterial_phage	2.7e-56	93.9
AXM00197.1\|2787022_2787472_-	hypothetical protein	K7P6X4	Enterobacteria_phage	1.7e-74	98.7
AXM00198.1\|2787468_2787807_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	4.3e-38	71.4
AXM00199.1\|2787815_2788142_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.4e-48	81.5
AXM00200.1\|2788185_2789397_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	2.8e-196	87.7
AXM00201.1\|2789406_2790255_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	2.7e-137	91.4
AXM00202.1\|2790268_2791573_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.4e-233	92.9
AXM00203.1\|2791572_2793309_-\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	100.0
AXM00204.1\|2793308_2793782_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.3e-85	98.7
AXM00205.1\|2793938_2794289_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.2e-51	81.9
AXM00206.1\|2794288_2794879_-	hypothetical protein	K7PGW6	Enterobacterial_phage	1.8e-95	81.1
AXM00207.1\|2795044_2795302_+	hypothetical protein	K7P7V5	Enterobacteria_phage	9.2e-33	96.3
AXM00208.1\|2795602_2797060_-	glycosyltransferase	S4TSQ9	Salmonella_phage	1.8e-266	89.9
AXM00209.1\|2797117_2797723_+	hypothetical protein	NA	NA	NA	NA
AXM00210.1\|2797780_2797960_-	hypothetical protein	K7PM01	Enterobacterial_phage	7.8e-15	81.4
AXM02069.1\|2797916_2798186_-	hypothetical protein	G8C7W1	Escherichia_phage	2.0e-30	82.0
AXM00211.1\|2798193_2798823_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	9.3e-103	89.0
AXM00212.1\|2798822_2799104_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.8e-43	93.5
AXM00213.1\|2799090_2799486_-	hypothetical protein	K7PHB9	Enterobacterial_phage	3.8e-62	96.9
AXM00214.1\|2799641_2800220_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	7.3e-46	53.9
AXM00215.1\|2800232_2801222_-	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	2.4e-166	85.1
AXM00216.1\|2801218_2801608_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.7e-67	94.6
AXM00217.1\|2801604_2801925_-	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	1.2e-42	75.5
AXM00218.1\|2801921_2802149_-	hypothetical protein	NA	NA	NA	NA
AXM00219.1\|2802145_2802805_-	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.1e-98	79.3
AXM00220.1\|2802804_2803299_-	hypothetical protein	NA	NA	NA	NA
AXM00221.1\|2803295_2804222_-	transcriptional regulator	K7PLZ7	Enterobacterial_phage	4.0e-70	56.0
AXM00222.1\|2804178_2804391_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.6e-12	63.5
AXM00223.1\|2804631_2805102_-	hypothetical protein	K7PJS5	Enterobacterial_phage	8.5e-77	96.8
AXM00224.1\|2805143_2805362_-	hypothetical protein	A0A2K8HL98	Pseudomonas_phage	4.9e-11	60.3
AXM00225.1\|2805460_2806180_+	helix-turn-helix domain-containing protein	A0A2R2X2B0	Escherichia_phage	4.1e-78	63.3
AXM00226.1\|2807391_2808219_+	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	7.9e-126	87.8
AXM00227.1\|2808215_2808707_+	hypothetical protein	A0A0F6N6A6	Escherichia_phage	2.8e-06	38.0
AXM00228.1\|2808816_2809374_+	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.0e-61	69.7
AXM00229.1\|2809366_2809567_+	hypothetical protein	NA	NA	NA	NA
AXM00230.1\|2810470_2810755_+	DUF4752 domain-containing protein	A0A2H5BFM0	Salmonella_phage	5.2e-21	44.1
AXM00231.1\|2810821_2811091_+	hypothetical protein	K7PKM4	Enterobacterial_phage	6.9e-31	74.2
AXM00232.1\|2811123_2811387_+	hypothetical protein	NA	NA	NA	NA
AXM00233.1\|2812724_2813225_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AXM00234.1\|2813634_2814966_+	MFS transporter	NA	NA	NA	NA
AXM00235.1\|2814981_2817018_+	family 31 glucosidase	NA	NA	NA	NA
AXM00236.1\|2817124_2817571_+	DUF441 domain-containing protein	NA	NA	NA	NA
AXM00237.1\|2817554_2818346_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXM00238.1\|2818445_2819633_+	cyanate MFS transporter	NA	NA	NA	NA
AXM00239.1\|2819664_2820372_-	hypothetical protein	NA	NA	NA	NA
AXM00240.1\|2820522_2820867_+	DUF488 domain-containing protein	NA	NA	NA	NA
AXM00241.1\|2820867_2821173_-	hypothetical protein	NA	NA	NA	NA
AXM00242.1\|2821253_2821508_-	DUF333 domain-containing protein	NA	NA	NA	NA
AXM00243.1\|2821520_2821703_-	hypothetical protein	NA	NA	NA	NA
AXM00244.1\|2821820_2822849_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	2.2e-13	32.1
AXM00245.1\|2822894_2822993_+	hypothetical protein	NA	NA	NA	NA
AXM02070.1\|2822993_2823068_+	hypothetical protein	NA	NA	NA	NA
AXM00246.1\|2823121_2823370_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AXM02071.1\|2823398_2823584_-	hypothetical protein	NA	NA	NA	NA
AXM00247.1\|2823742_2823835_+	stress response membrane protein YncL	NA	NA	NA	NA
AXM00248.1\|2823959_2825459_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AXM00249.1\|2825463_2825709_-	DUF2543 domain-containing protein	NA	NA	NA	NA
AXM00250.1\|2825784_2827035_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.3e-20	92.6
AXM00251.1\|2827152_2827815_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AXM00252.1\|2827814_2828288_+	NUDIX hydrolase	NA	NA	NA	NA
AXM00253.1\|2828328_2829441_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_10

3448970 : 3498832

Salmonella_phage(25.0%)

tail,holin,lysis,terminase,integrase

attL 3448624:3448675|attR 3498841:3498892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3448624:3448675	attL	NA	NA	NA	NA
AXM00798.1\|3448970_3450239_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	6.4e-228	90.5
AXM00799.1\|3450659_3451022_+	GtrA family protein	U5P0S6	Shigella_phage	2.0e-49	84.2
AXM00800.1\|3451018_3451951_+	glycosyltransferase	U5P087	Shigella_phage	8.5e-161	92.1
AXM00801.1\|3451960_3453463_+	hypothetical protein	Q8LTG0	Salmonella_phage	9.5e-37	26.6
AXM00802.1\|3453508_3455713_-	hypothetical protein	F1C5A8	Cronobacter_phage	1.1e-38	61.4
AXM00803.1\|3455770_3458248_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.2
AXM00804.1\|3458234_3458600_-	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	1.6e-62	90.8
AXM00805.1\|3458613_3459084_-	hypothetical protein	F1C5F1	Cronobacter_phage	1.0e-66	80.1
AXM00806.1\|3459083_3459581_-	hypothetical protein	F1C5F0	Cronobacter_phage	1.9e-87	90.9
AXM00807.1\|3459622_3459850_-	hypothetical protein	NA	NA	NA	NA
AXM02094.1\|3459860_3463364_-	hypothetical protein	R9TMK1	Aeromonas_phage	1.7e-209	51.7
AXM00808.1\|3463425_3464109_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.2e-79	62.3
AXM00809.1\|3464167_3464929_-	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	2.4e-73	69.0
AXM00810.1\|3464985_3465369_-	hypothetical protein	G0ZNE4	Cronobacter_phage	1.3e-38	57.5
AXM00811.1\|3465408_3465951_-	HNH endonuclease	Q7Y5F9	Xanthomonas_virus	1.9e-32	43.7
AXM00812.1\|3466053_3466422_-	hypothetical protein	F1C5E3	Cronobacter_phage	8.8e-37	63.9
AXM00813.1\|3466424_3466781_-	hypothetical protein	G0ZNE2	Cronobacter_phage	2.7e-27	56.4
AXM00814.1\|3466932_3467103_-	50S ribosomal protein L13	I6R0P9	Salmonella_phage	2.2e-11	50.0
AXM02095.1\|3467102_3467504_-	hypothetical protein	G0ZNE1	Cronobacter_phage	4.6e-55	78.2
AXM00815.1\|3467547_3468096_-	HNH endonuclease	A0A2D2W633	Pectobacterium_phage	1.3e-20	35.9
AXM00816.1\|3468188_3468482_-	hypothetical protein	A0A1V0E5P8	Salmonella_phage	8.5e-43	88.7
AXM00817.1\|3468491_3469568_-	hypothetical protein	Q5G8Y0	Enterobacteria_phage	5.9e-190	91.9
AXM00818.1\|3469586_3470036_-	hypothetical protein	H6WRT3	Salmonella_phage	3.2e-65	85.9
AXM00819.1\|3470048_3471314_-	hypothetical protein	Q5G8Y2	Enterobacteria_phage	2.0e-221	91.9
AXM00820.1\|3471316_3473050_-	hypothetical protein	G0ZND6	Cronobacter_phage	1.3e-218	67.6
AXM00821.1\|3473009_3474359_-	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	1.1e-230	87.3
AXM00822.1\|3474724_3475978_-\|terminase	PBSX family phage terminase large subunit	I6RSK1	Salmonella_phage	5.2e-214	97.3
AXM00823.1\|3475974_3476430_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	4.0e-63	81.3
AXM00824.1\|3476460_3477099_-	hypothetical protein	I6S676	Salmonella_phage	1.8e-114	92.5
AXM00825.1\|3477102_3477303_-	hypothetical protein	NA	NA	NA	NA
AXM00826.1\|3477306_3477525_-	hypothetical protein	NA	NA	NA	NA
AXM00827.1\|3477874_3478561_-	hypothetical protein	A0A192Y918	Salmonella_phage	1.8e-123	99.1
AXM00828.1\|3478758_3479232_-\|lysis	lysis protein	Q8HA85	Salmonella_phage	1.6e-38	54.1
AXM00829.1\|3479228_3479669_-	lysozyme	A0A0M4R365	Salmonella_phage	4.2e-62	81.9
AXM00830.1\|3479655_3479973_-\|holin	holin	E7C9S8	Salmonella_phage	8.9e-46	86.7
AXM00831.1\|3480098_3480332_+	hypothetical protein	NA	NA	NA	NA
AXM00832.1\|3480465_3481155_-	antiterminator	I6PDF8	Cronobacter_phage	1.4e-56	50.2
AXM00833.1\|3481154_3481292_-	YlcG family protein	K7PHH3	Enterobacteria_phage	1.9e-05	71.0
AXM00834.1\|3481288_3481900_-	protein NinG	A0A0M4RU10	Salmonella_phage	3.7e-40	69.0
AXM00835.1\|3481892_3482561_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.3e-126	95.5
AXM00836.1\|3482557_3482728_-	NinE family protein	K7P7K0	Enterobacteria_phage	1.0e-19	85.7
AXM00837.1\|3482720_3483170_-	recombination protein NinB	I6R9D0	Salmonella_phage	2.5e-33	47.2
AXM00838.1\|3483389_3483683_-	DUF4752 domain-containing protein	K7PHN1	Enterobacterial_phage	7.0e-21	43.5
AXM00839.1\|3483682_3484300_-	hypothetical protein	G8C7V0	Escherichia_phage	1.9e-55	68.3
AXM00840.1\|3484296_3484482_-	hypothetical protein	K7P7P5	Enterobacteria_phage	1.6e-26	91.8
AXM00841.1\|3484478_3484823_-	hypothetical protein	K7P7C5	Enterobacteria_phage	2.8e-21	56.8
AXM00842.1\|3484819_3485116_-	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	7.1e-29	63.0
AXM00843.1\|3485112_3485427_-	protein ren	O48423	Enterobacteria_phage	2.1e-18	54.7
AXM00844.1\|3485416_3486790_-	replicative DNA helicase	E5AGF0	Erwinia_phage	5.8e-166	63.8
AXM00845.1\|3486786_3487872_-	DNA replication protein	E5AGE9	Erwinia_phage	1.5e-84	45.4
AXM00846.1\|3488100_3488667_-	hypothetical protein	NA	NA	NA	NA
AXM00847.1\|3488696_3488948_-	transcriptional regulator	G8C7U2	Escherichia_phage	9.0e-17	54.7
AXM00848.1\|3489075_3489768_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	1.1e-59	53.3
AXM00849.1\|3489781_3490156_-	hypothetical protein	NA	NA	NA	NA
AXM00850.1\|3490581_3490923_+	hypothetical protein	G8C7T6	Escherichia_phage	3.0e-55	98.2
AXM00851.1\|3491016_3491268_+	hypothetical protein	NA	NA	NA	NA
AXM02096.1\|3491477_3491672_+	hypothetical protein	NA	NA	NA	NA
AXM00852.1\|3491823_3492033_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	2.0e-33	95.7
AXM00853.1\|3492104_3492389_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-46	91.5
AXM00854.1\|3492398_3493313_+	DNA recombinase	G8C7T0	Escherichia_phage	6.1e-172	100.0
AXM00855.1\|3493309_3493792_+	hypothetical protein	G8C7S9	Escherichia_phage	8.4e-80	99.4
AXM00856.1\|3493800_3494229_+	regulator	M9NYX4	Enterobacteria_phage	4.9e-71	94.4
AXM00857.1\|3494225_3494378_+	DUF1317 domain-containing protein	T1SAR0	Salmonella_phage	2.1e-05	44.2
AXM00858.1\|3494374_3495034_+	DNA methyltransferase	G8C7S6	Escherichia_phage	1.2e-121	93.2
AXM00859.1\|3495030_3495249_+	hypothetical protein	NA	NA	NA	NA
AXM00860.1\|3495245_3495542_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.4e-29	66.7
AXM00861.1\|3495538_3495730_+	DUF1382 domain-containing protein	A0A0P0ZC60	Stx2-converting_phage	2.4e-14	66.1
AXM00862.1\|3495726_3496086_+	DUF2591 domain-containing protein	J7I4M3	Pseudomonas_phage	6.2e-11	36.1
AXM00863.1\|3496186_3496402_+	hypothetical protein	M1FQT7	Enterobacteria_phage	1.3e-16	61.4
AXM00864.1\|3496401_3496797_+	DUF2591 domain-containing protein	A0A075B8G3	Enterobacteria_phage	3.4e-10	38.8
AXM00865.1\|3496774_3497014_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	3.5e-26	70.5
AXM00866.1\|3497023_3497350_+	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	5.0e-44	81.9
AXM02097.1\|3497456_3497792_+	DNA-binding protein	NA	NA	NA	NA
AXM02098.1\|3497788_3498832_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	5.3e-204	99.1
3498841:3498892	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029248

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1126 : 63730

Leptospira_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXM02266.1\|1126_2247_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
AXM02267.1\|2478_2727_+	hypothetical protein	NA	NA	NA	NA
AXM02268.1\|3249_3603_+	pili assembly chaperone	NA	NA	NA	NA
AXM02269.1\|3620_3971_+	plasmid transfer protein	NA	NA	NA	NA
AXM02270.1\|3982_4771_+	pilus assembly protein	NA	NA	NA	NA
AXM02271.1\|4770_6042_+	TrhK	NA	NA	NA	NA
AXM02272.1\|6179_7388_+\|transposase	IS4 family transposase ISVsa5	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
AXM02273.1\|7381_7843_+	hypothetical protein	NA	NA	NA	NA
AXM02274.1\|7832_9188_+	conjugal transfer protein TraB	NA	NA	NA	NA
AXM02597.1\|9255_9678_+	transcriptional regulator	NA	NA	NA	NA
AXM02596.1\|9715_10549_+	DsbC family protein	NA	NA	NA	NA
AXM02275.1\|10558_11509_+	TrhV	NA	NA	NA	NA
AXM02276.1\|11517_14199_+	conjugal transfer protein	NA	NA	NA	NA
AXM02277.1\|18037_19291_+	ParA family protein	NA	NA	NA	NA
AXM02278.1\|19287_20292_+	peptide transporter	A0A1I9KFW9	Aeromonas_phage	2.7e-11	33.8
AXM02279.1\|20353_20743_-	hypothetical protein	NA	NA	NA	NA
AXM02280.1\|20739_21261_-	hypothetical protein	NA	NA	NA	NA
AXM02281.1\|21253_22090_-	hypothetical protein	NA	NA	NA	NA
AXM02282.1\|23026_24146_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
AXM02283.1\|25848_26403_-	plasmid transfer protein	NA	NA	NA	NA
AXM02284.1\|26411_26837_-	htdF	NA	NA	NA	NA
AXM02285.1\|26826_27279_-	transfer repressor	NA	NA	NA	NA
AXM02286.1\|27767_28691_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	8.4e-177	99.7
AXM02287.1\|28747_29386_-	hypothetical protein	NA	NA	NA	NA
AXM02288.1\|29397_30435_-	stbA family protein	A0A0A7NPX4	Enterobacteria_phage	3.6e-43	35.0
AXM02289.1\|30910_32031_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
AXM02290.1\|35135_35648_+	signal peptidase I	NA	NA	NA	NA
AXM02598.1\|35928_37146_+	conjugal transfer protein	NA	NA	NA	NA
AXM02599.1\|37335_38346_+	plasmid transfer protein	NA	NA	NA	NA
AXM02291.1\|38364_41553_+	conjugal transfer protein TraN	NA	NA	NA	NA
AXM02292.1\|41581_42454_-	hypothetical protein	NA	NA	NA	NA
AXM02293.1\|42633_44418_+	ATP-dependent helicase	G3MA40	Bacillus_virus	6.0e-22	23.1
AXM02294.1\|44812_45685_+	hypothetical protein	NA	NA	NA	NA
AXM02295.1\|45742_46120_+	hypothetical protein	NA	NA	NA	NA
AXM02296.1\|46180_47158_+	hypothetical protein	NA	NA	NA	NA
AXM02297.1\|47215_48274_+	ATP-binding protein	NA	NA	NA	NA
AXM02298.1\|48642_49770_+	DUF3150 domain-containing protein	NA	NA	NA	NA
AXM02299.1\|49846_51853_+	VWA domain-containing protein	NA	NA	NA	NA
AXM02300.1\|51925_52147_+	hypothetical protein	NA	NA	NA	NA
AXM02301.1\|52260_53493_+	hypothetical protein	NA	NA	NA	NA
AXM02302.1\|53762_54284_+	hypothetical protein	NA	NA	NA	NA
AXM02303.1\|54362_55241_+	hypothetical protein	NA	NA	NA	NA
AXM02304.1\|55310_56246_+	hypothetical protein	NA	NA	NA	NA
AXM02305.1\|56314_57235_+	hypothetical protein	NA	NA	NA	NA
AXM02306.1\|57301_58240_+	hypothetical protein	NA	NA	NA	NA
AXM02307.1\|58411_59368_+	hypothetical protein	NA	NA	NA	NA
AXM02308.1\|59631_59907_+	hypothetical protein	NA	NA	NA	NA
AXM02309.1\|60352_61473_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
AXM02310.1\|61774_62032_+	hypothetical protein	NA	NA	NA	NA
AXM02311.1\|62610_63730_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8

DBSCAN-SWA_2

90192 : 122643

Salmonella_phage(18.18%)

transposase,integrase

attL 94072:94131|attR 115794:117159

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXM02340.1\|90192_91401_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-47	45.7
AXM02341.1\|91823_92015_-	hypothetical protein	NA	NA	NA	NA
AXM02342.1\|92106_92448_-	hypothetical protein	NA	NA	NA	NA
AXM02343.1\|93434_93689_+	hypothetical protein	NA	NA	NA	NA
94072:94131	attL	NA	NA	NA	NA
AXM02344.1\|94348_95353_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
AXM02345.1\|95431_98398_-\|transposase	Tn3-like element ISPa38 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
AXM02346.1\|98664_98922_-	DDE domain-containing protein	A0A077SL39	Escherichia_phage	8.9e-12	61.9
AXM02347.1\|98985_99750_-\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AXM02348.1\|99837_99951_+	NTP-binding protein	NA	NA	NA	NA
AXM02349.1\|100256_100757_-	N-acetyltransferase	NA	NA	NA	NA
AXM02350.1\|100775_100955_+	hypothetical protein	NA	NA	NA	NA
AXM02351.1\|100884_101724_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXM02352.1\|101717_102065_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AXM02353.1\|102228_103020_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AXM02354.1\|103125_103929_-	OXA-5 family class D beta-lactamase OXA-129	NA	NA	NA	NA
AXM02355.1\|104024_104522_-	trimethoprim-resistant dihydrofolate reductase DfrA21	A0A076GDN3	Bacillus_phage	4.9e-22	36.2
AXM02356.1\|104666_105704_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	7.7e-62	43.4
AXM02357.1\|105675_106512_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AXM02358.1\|106511_107315_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AXM02359.1\|107380_107995_-	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
AXM02360.1\|108120_111006_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.4e-190	39.9
AXM02361.1\|111113_111293_-	transcriptional regulator	NA	NA	NA	NA
AXM02362.1\|111461_111752_+	nucleotidyltransferase	NA	NA	NA	NA
AXM02363.1\|111748_112150_+	DUF86 domain-containing protein	NA	NA	NA	NA
AXM02364.1\|112139_112496_+	cupin domain-containing protein	NA	NA	NA	NA
AXM02365.1\|112750_113077_+	hypothetical protein	NA	NA	NA	NA
AXM02366.1\|113073_113574_+\|transposase	transposase	NA	NA	NA	NA
AXM02367.1\|113570_113942_+	hypothetical protein	NA	NA	NA	NA
AXM02368.1\|113935_114493_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
AXM02369.1\|114571_115576_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
AXM02370.1\|117514_118501_-	hypothetical protein	NA	NA	NA	NA
115794:117159	attR	NA	NA	NA	NA
AXM02371.1\|119421_119814_+	hypothetical protein	NA	NA	NA	NA
AXM02372.1\|119792_120104_+	hypothetical protein	NA	NA	NA	NA
AXM02373.1\|120472_121129_+	hypothetical protein	NA	NA	NA	NA
AXM02374.1\|121434_122643_+\|transposase	IS4 family transposase ISVsa5	Q9E8P4	Bluetongue_virus	3.0e-235	100.0

DBSCAN-SWA_3

180138 : 288524

108

uncultured_Caudovirales_phage(30.77%)

transposase,integrase,protease

attL 221232:221247|attR 277932:277947

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXM02427.1\|180138_181258_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
AXM02428.1\|183439_183820_+	hypothetical protein	NA	NA	NA	NA
AXM02429.1\|184158_184362_+	hypothetical protein	NA	NA	NA	NA
AXM02430.1\|184351_184642_-	korC	NA	NA	NA	NA
AXM02431.1\|184638_185676_-	hypothetical protein	NA	NA	NA	NA
AXM02432.1\|185951_186215_+	hypothetical protein	NA	NA	NA	NA
AXM02433.1\|186211_186778_+	hypothetical protein	NA	NA	NA	NA
AXM02434.1\|188633_188798_-	hypothetical protein	NA	NA	NA	NA
AXM02435.1\|188855_189224_-	hypothetical protein	NA	NA	NA	NA
AXM02436.1\|189907_191275_-	two-component sensor histidine kinase	NA	NA	NA	NA
AXM02437.1\|191250_191919_-	DNA-binding response regulator	NA	NA	NA	NA
AXM02438.1\|192004_192781_-	hypothetical protein	NA	NA	NA	NA
AXM02439.1\|192931_193078_+	phosphoribulokinase	NA	NA	NA	NA
AXM02440.1\|194444_195149_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXM02441.1\|195314_195791_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AXM02442.1\|195867_197487_-	phosphoethanolamine transferase	NA	NA	NA	NA
AXM02443.1\|197675_198599_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.4e-176	99.3
AXM02444.1\|198682_200029_+	sensor histidine kinase	W8CYF6	Bacillus_phage	8.8e-18	26.6
AXM02445.1\|200246_200681_+	copper-binding protein	NA	NA	NA	NA
AXM02446.1\|200938_202054_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
AXM02447.1\|202176_202449_+	transcriptional repressor RcnR	NA	NA	NA	NA
AXM02448.1\|202914_203733_+	DUF4942 domain-containing protein	NA	NA	NA	NA
AXM02449.1\|203729_204935_+	ATP/GTP-binding protein	NA	NA	NA	NA
AXM02450.1\|204998_205202_-	hypothetical protein	NA	NA	NA	NA
AXM02451.1\|205214_206534_-	DUF1173 domain-containing protein	NA	NA	NA	NA
AXM02452.1\|206784_208212_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
AXM02453.1\|208426_208942_+	nuclease	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
AXM02454.1\|208944_209841_+	hypothetical protein	NA	NA	NA	NA
AXM02455.1\|209888_210203_+	hypothetical protein	NA	NA	NA	NA
AXM02456.1\|210276_210534_+	hypothetical protein	NA	NA	NA	NA
AXM02457.1\|210592_210826_+	hypothetical protein	NA	NA	NA	NA
AXM02458.1\|210871_211126_+	hypothetical protein	NA	NA	NA	NA
AXM02459.1\|211163_211451_+	hypothetical protein	NA	NA	NA	NA
AXM02604.1\|211520_211718_+	hypothetical protein	NA	NA	NA	NA
AXM02460.1\|211858_212134_+	hypothetical protein	NA	NA	NA	NA
AXM02461.1\|212625_214104_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4
AXM02462.1\|214122_214950_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
AXM02463.1\|215009_215435_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
AXM02464.1\|215447_216737_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
AXM02465.1\|216782_217103_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
AXM02466.1\|217189_217894_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
AXM02467.1\|217926_219330_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXM02468.1\|219521_219839_+	hypothetical protein	NA	NA	NA	NA
AXM02469.1\|219861_220167_+	hypothetical protein	NA	NA	NA	NA
AXM02470.1\|220211_220883_+\|protease	serine protease	NA	NA	NA	NA
221232:221247	attL	NA	NA	NA	NA
AXM02471.1\|221340_221748_+	hypothetical protein	NA	NA	NA	NA
AXM02472.1\|221798_222116_-	hypothetical protein	NA	NA	NA	NA
AXM02473.1\|222114_222243_+	ABC transporter	NA	NA	NA	NA
AXM02474.1\|222281_223196_-\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	3.6e-172	98.4
AXM02475.1\|223692_224184_-	hypothetical protein	NA	NA	NA	NA
AXM02476.1\|224742_226458_-\|integrase	integrase	NA	NA	NA	NA
AXM02477.1\|226567_229597_+\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
AXM02478.1\|229703_230729_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
AXM02479.1\|230725_231505_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
AXM02480.1\|231891_232773_+	carbapenem-hydrolyzing class A beta-lactamase KPC-4	A0A1B0VBP7	Salmonella_phage	1.1e-74	52.5
AXM02481.1\|233022_234342_-\|transposase	IS1182 family transposase ISKpn6	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
AXM02482.1\|235359_238695_-	hypothetical protein	NA	NA	NA	NA
AXM02483.1\|238917_239271_-	hypothetical protein	NA	NA	NA	NA
AXM02484.1\|239424_239979_-	hypothetical protein	NA	NA	NA	NA
AXM02485.1\|241003_241438_+	peptidase	F1C5A6	Cronobacter_phage	2.5e-22	48.8
AXM02486.1\|241421_242681_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.5e-96	44.5
AXM02487.1\|242726_243536_-	DsbA family protein	NA	NA	NA	NA
AXM02488.1\|243642_244254_+	hypothetical protein	NA	NA	NA	NA
AXM02605.1\|244313_244574_-	hypothetical protein	NA	NA	NA	NA
AXM02489.1\|244769_245162_-	hypothetical protein	NA	NA	NA	NA
AXM02490.1\|245186_245936_-	thiol:disulfide interchange protein	NA	NA	NA	NA
AXM02491.1\|246083_246623_+	lytic transglycosylase	NA	NA	NA	NA
AXM02492.1\|246705_247263_+	hypothetical protein	NA	NA	NA	NA
AXM02493.1\|247386_248448_+	HNH endonuclease	NA	NA	NA	NA
AXM02494.1\|248457_248964_+	hypothetical protein	NA	NA	NA	NA
AXM02495.1\|249031_250240_-\|transposase	IS4 family transposase ISVsa5	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
AXM02496.1\|250424_254375_-	conjugal transfer protein TraG	NA	NA	NA	NA
AXM02497.1\|254383_255799_-	conjugal transfer protein	NA	NA	NA	NA
AXM02498.1\|255788_256835_-	thioredoxin family protein	NA	NA	NA	NA
AXM02499.1\|257426_257939_-	hypothetical protein	NA	NA	NA	NA
AXM02500.1\|257940_258741_-	trhR	NA	NA	NA	NA
AXM02501.1\|259500_259986_+	plasmid transfer protein	NA	NA	NA	NA
AXM02502.1\|259982_260720_+	hypothetical protein	NA	NA	NA	NA
AXM02503.1\|260729_263876_+	helicase	NA	NA	NA	NA
AXM02504.1\|263875_265960_+	hypothetical protein	NA	NA	NA	NA
AXM02505.1\|265959_267069_+	hypothetical protein	NA	NA	NA	NA
AXM02506.1\|267055_267718_+	DUF4400 domain-containing protein	NA	NA	NA	NA
AXM02507.1\|267728_268910_+	S49 family peptidase	B8QTU8	Erwinia_phage	7.5e-13	29.2
AXM02606.1\|269442_270649_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.6e-101	62.7
AXM02508.1\|271270_271624_-	hypothetical protein	NA	NA	NA	NA
AXM02509.1\|271689_271974_-	hypothetical protein	NA	NA	NA	NA
AXM02510.1\|272330_272630_-	hypothetical protein	NA	NA	NA	NA
AXM02511.1\|273062_273431_-	hypothetical protein	NA	NA	NA	NA
AXM02512.1\|273652_274189_-	hypothetical protein	NA	NA	NA	NA
AXM02513.1\|274256_274694_-	hypothetical protein	NA	NA	NA	NA
AXM02514.1\|274738_275035_-	hypothetical protein	NA	NA	NA	NA
AXM02515.1\|275169_275871_-	hypothetical protein	NA	NA	NA	NA
AXM02516.1\|276185_276467_-	hypothetical protein	NA	NA	NA	NA
AXM02517.1\|276532_277717_-	DNA-binding protein	NA	NA	NA	NA
AXM02518.1\|278133_278328_-	hypothetical protein	NA	NA	NA	NA
277932:277947	attR	NA	NA	NA	NA
AXM02519.1\|278820_279765_+	hypothetical protein	NA	NA	NA	NA
AXM02520.1\|279860_280463_+	hypothetical protein	A0A1V0E5L6	Salmonella_phage	1.7e-08	42.6
AXM02521.1\|280522_280873_+	hypothetical protein	NA	NA	NA	NA
AXM02522.1\|280919_281123_+	hypothetical protein	NA	NA	NA	NA
AXM02523.1\|281404_281725_+	hypothetical protein	NA	NA	NA	NA
AXM02524.1\|282333_282492_-	Hok/Gef family protein	NA	NA	NA	NA
AXM02525.1\|282563_282851_-	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
AXM02526.1\|282850_283090_-	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AXM02527.1\|283114_283309_+	hypothetical protein	NA	NA	NA	NA
AXM02528.1\|283352_284276_-	cation transporter	NA	NA	NA	NA
AXM02607.1\|284475_285048_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
AXM02529.1\|285523_286762_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	2.5e-11	23.1
AXM02530.1\|287183_288524_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP029247

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP029247_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029247_1

40146-40235

Orphan

Consensus_repeat	Method
CCTTTTGGCTGGAAACGCCCGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029247_1

>merge|CP029247|1|40146-40235|CRISPRCasFinder
CCTTTTGGCTGGAAACGCCCGTCAGACTCTGCTTTTGTATAAGCCTGTCCAGCTGGGGTATAGCTCCCTTTTGGCTGGAAACGTCCGTCA

>CP029247|1|1|40146-40235|CRISPRCasFinder
CCTTTTGGCTGGAAACGCCCGTCA	GACTCTGCTTTTGTATAAGCCTGTCCAGCTGGGGTATAGCTC
CCTTTTGGCTGGAAACGTCCGTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029247.1\|AXM02185.1\|49248_50046_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|163704
CP029247.1\|AXM02192.1\|57342_57726_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02180.1\|36706_37048_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02174.1\|32701_33427_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02186.1\|50038_50770_-\|phage-minor-tail-protein-L	unknown	unknown	gnl\|CDD\|130661
CP029247.1\|AXM02193.1\|57727_58201_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02182.1\|37822_38146_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02188.1\|51203_55787_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|226450
CP029247.1\|AXM02190.1\|56144_56462_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02178.1\|35882_36152_+\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|226860
CP029247.1\|AXM02175.1\|33691_34489_+\|DUF2971-domain-containing-protein	unknown	unknown	gnl\|CDD\|378585
CP029247.1\|AXM02176.1\|34529_34889_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02187.1\|50826_51162_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227062
CP029247.1\|AXM02183.1\|39366_39798_-\|tail-fiber-assembly-protein	unknown	unknown	gnl\|CDD\|367075
CP029247.1\|AXM02191.1\|56521_57268_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227779
CP029247.1\|AXM02189.1\|55794_56064_-\|hypothetical-protein	unknown	unknown	unknown
CP029247.1\|AXM02181.1\|37116_37809_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222880
CP029247.1\|AXM02184.1\|48670_49261_-\|tail-assembly-protein	unknown	unknown	gnl\|CDD\|227067
CP029247.1\|AXM02177.1\|34888_35554_-\|plasmid-stability-protein	unknown	unknown	gnl\|CDD\|222854
CP029247.1\|AXM02179.1\|36155_36680_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
CP029247.1\|AXM02185.1\|49248_50046_-\|phage-tail-protein	gnl\|CDD\|163704	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	1.71636e-40
CP029247.1\|AXM02179.1\|36155_36680_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.17883e-07
CP029247.1\|AXM02175.1\|33691_34489_+\|DUF2971-domain-containing-protein	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	4.49896e-10
CP029247.1\|AXM02186.1\|50038_50770_-\|phage-minor-tail-protein-L	gnl\|CDD\|130661	TIGR01600, lambda_minor_tail, lambda-like phage minor tail protein L. This model detects members of the family of phage lambda minor tail protein L. This model was built as a fragment model to allow detection of fragmentary sequences, as might be found in cryptic prophage regions. [Mobile and extrachromosomal element functions, Prophage functions].	5.34639e-146
CP029247.1\|AXM02188.1\|51203_55787_-\|phage-tail-tape-measure-protein	gnl\|CDD\|226450	COG3941, COG3941, Mu-like prophage protein [General function prediction only].	2.15715e-144
CP029247.1\|AXM02181.1\|37116_37809_-\|hypothetical-protein	gnl\|CDD\|222880	PHA02564, V, virion protein; Provisional.	5.08203e-43
CP029247.1\|AXM02191.1\|56521_57268_-\|hypothetical-protein	gnl\|CDD\|227779	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion].	3.78897e-33
CP029247.1\|AXM02187.1\|50826_51162_-\|phage-tail-protein	gnl\|CDD\|227062	COG4718, COG4718, Phage-related protein [Function unknown].	6.14718e-50
CP029247.1\|AXM02178.1\|35882_36152_+\|DUF1778-domain-containing-protein	gnl\|CDD\|226860	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown].	2.29605e-23
CP029247.1\|AXM02184.1\|48670_49261_-\|tail-assembly-protein	gnl\|CDD\|227067	COG4723, COG4723, Phage-related protein, tail component [Function unknown].	1.74402e-72
CP029247.1\|AXM02177.1\|34888_35554_-\|plasmid-stability-protein	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	6.57606e-41
CP029247.1\|AXM02183.1\|39366_39798_-\|tail-fiber-assembly-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	4.63067e-30

>CP029247.1|AXM02183.1|39366_39798_-|tail-fiber-assembly-protein
MKKYFSNTEKSFYLEETVKTYQAQDISVPADLMIISDDEYEAFMVSPDRKAPQYNVESECMEWVDIEPPTREEAIENAEALKAQLLSVAAQAIAPLQDAVDLSMATDDEMASLSAWKKYRVLLNRVDTSEPDEIEWPESPLTE
>CP029247.1|AXM02182.1|37822_38146_-|hypothetical-protein
MSNEMAGVTPEQVERIAAIVAREVVGKLGKELREEIGQGVNDQLKTYFGDMTPSQHSIQHSNLDKLLNRLDAISSGFFGGIISKITSFLITALLLGLAAYGVKNGLQ
>CP029247.1|AXM02181.1|37116_37809_-|hypothetical-protein
MKTPRGIRNNNPGNLDKGSPWQGLIDNPAEPRFCTFKDPVWGIRALAVTLITYHDKRRAKDGSSIDTIREVIERWAPPHENNTVAYVNEVSKAVGVTPDMIIDLHDYDTLRPLVEAIIRHENGRGPLKTPNTWYAAEVIEEGLRRAGVVKPVKTVKAVPVTKETAGATVTAGIGLAQLADVMPQVSAAMDKAQGHITSGDTVRIIFGIATIVVAGFIAWSQVRKHQNGMV
>CP029247.1|AXM02180.1|36706_37048_-|hypothetical-protein
MSVLIRWEIVRPGKQSKRRPDRRTGKGFKAQWTSKMRHLMKCGGKMLLLFIASCMISGCVIKTQTSGVLFCDAANPIYVSNDDFMTEETEREILFHNTMGERLCNWQDRQALN
>CP029247.1|AXM02179.1|36155_36680_+|N-acetyltransferase
MANLTIEMFSEEAVYDFSCFDCGETSLNDFLNNRLAQQHSGRILRGYLLLTRDPIPKVMGFYTLSGSCFARNTLPSNTQQRKVPYSDAPSVTLGRLAIDKSIQRQGYGETLVAHAMKVVYRASLAVGIYALFVDAKNENAMRFYKQLGFTPLTGDNANSLFYPTKGIEKLFGGK
>CP029247.1|AXM02178.1|35882_36152_+|DUF1778-domain-containing-protein
MSALKKQRIDLRLTDDDKSMIEEAAAMTNQTITQFMVASASERAAEVIEQHRRLILSEESWNIVMDAISNPPAPNDRLKRAAERLQSME
>CP029247.1|AXM02177.1|34888_35554_-|plasmid-stability-protein
MTRIIVVGGTKGGPGKSTVAQQIAVCLKVKKKKKTHVTDIDIQRTTTSWCEDRRQNEDLELIPFAYVQDDIVKHIKSLKGRYDYVVIDAGGFDSEIQRQAMLLADFIIIPLRPKRRDLKSLRDIDPIIDNVRNVNETVKIRAVVNQCPSLPSQASRILAAKEIVETFGIEAAPVNLYNRNVYDDAEEAGRSIFEMTGAERDKKAEAEFEEFVDYIMSLEEE
>CP029247.1|AXM02176.1|34529_34889_-|hypothetical-protein
MSMRMGDLAKRKDPEEPVKSSTPMRQPVRPQGRPTRGKEKIKSRTMSLEDEYFDLLEMMKFIPRFEKFTRSDVIRAAIFHLAEKSPQEIEDIVKLNEAITAADVTMRTDEIKRELMKKG
>CP029247.1|AXM02175.1|33691_34489_+|DUF2971-domain-containing-protein
MMILYKYVPEETLKLFFDHDATSFKFTPVGQFNDPFETYGVSFASEDKDSLAHLTFRSKINSDLASLCLSRSPLEVLMWSHYAQHHRGYVVGIDTELAGFNDENLCLITANEGGIDYLDERDKSRVIISDKNFKNKDIVKKVLFRKSQHWKYEKEVRIVIESDKLIPIGDDEEDRFYIYKAPGTNIIKEIFIGISNDDFELTALENDNLRNAILDNNIKIQKCCFKRGTWDLDKTDYDMSLLTDWPSADFGILAGVISAFEKNEI
>CP029247.1|AXM02174.1|32701_33427_-|hypothetical-protein
MSQIFFNTINNDQYDFMTEWDTTVMDKWVAENIGLSRCKDEAELFEIKWFDYRDMHPLMATCLFTEAYKRQYSYIMLSHGREHYETAQFTTGLKRVPYQEQSTANKTSLWKARQFADQYCCSYDYFISTVLSAAARRLWDKLPRPQHLWQPELIEIFEQKLAKRAVTRLDDSLVSFKHLGDMQHDPIQERYFEWVLERLRGITRDKRVRIIFSAVWLMEIVPERVIYAHFPEELEEARRFC
>CP029247.1|AXM02184.1|48670_49261_-|tail-assembly-protein
MSELVHVQLGGPMARHFGRHWHLKVRNTKQALDLVEANRPGLKAWMKRNMKTYDKYHIQITNKQGHKWSVDESEFQMMGQSDNIAKIRITPVPRGSGGSAFGWFQTVVGAALMVISAFIMPALVPLGLSLMMGGISQLISPQATNDSVRQADNSNSFYFDGPQNTTNQGNPVQLIYGEEILVGSQVVSSSITIDQL
>CP029247.1|AXM02185.1|49248_50046_-|phage-tail-protein
MGNRAFPELGSDVMQEIYLTAIKRYPNEACGFLVRTTGDKYRFMEARNVSENPKNTFVMHADDIIAAEDTGDVVAIWHSHTDESAEASDADRAGCEATEVPWLILAVRKNVEGDAPFHFSEMNVITPDGFEMPYLGRPYVFGVFDCWMLCRDYLKREFNVELNPNPHLHIPSWYTGDTDILDQNYRNEGLVRLAPGTEPQRGDVFFIQYGKMPDHCAVYIGDGMILHHQIDRLSCRAYYGGMYQKHTTHHLRHRDLLKGDETCLS
>CP029247.1|AXM02186.1|50038_50770_-|phage-minor-tail-protein-L
MLAPLYFKEETMGIKADIQSLSPSALIELFELDMSNTTSGGKLFFHAGTNELMEPVVWQGVSYEPWPIKASGFDKTGQGTLPRPKIQVSNFAGTVSAEVQANDDLVGCRIIRKMTLARFLDAANFKDGNPTADPNQHFPDEMWFIEQKTLETHEVVEFELSSVFDLMGVQLPYRQIIKNTCPWKYRGPECGYTGPYFDKNNQQTTMSGADYCTKRYDSCNARRNYFANGVIHFGGFIGATRYG
>CP029247.1|AXM02187.1|50826_51162_-|phage-tail-protein
MERLTFNWYPDYESEKTVKPNVTVLNFGDDYEQRQAKGLNRIKEEWSLTFTRSYDVINAVDDFLTARAAVESFYWTNPRGKKIVVVCDSHTVKRYQGYQVLTATFRQIYEG
>CP029247.1|AXM02188.1|51203_55787_-|phage-tail-tape-measure-protein
MSQNVEFILSLEDKQFTASIDRAGKLLTRFGEQATKPAQKINNLERSLGSVSRIIGVLESKLDATADKLQDVAAGFELVSDVSRKTRGNITSLNSGLKTLIERVDTTTSSVNKLTTSLRKVQSELNEFSDWATFAGKSASRFGTEVKEASSSVSGMNTRLNTTTKRLSNWGVTTSQAAEGLKKVRDQMDAVIGRQQLISKPVRVRTSGYGEGGGNGGGGRRGGTNGHGGRGAENGMFSGLRGNIFLLGEIGDAARTVTDILFGWQKPIVEAASEMERMRVMLRGLNKDKANPGKAAAEDMEYIVDMAQNAPFAMQALTDSFVKFRSAGLDPTDGSLKALVDSVARFGGDSELLKRAAVAVQQMSGKGVVSMEELRQQLGEAVPNAMKAMADAAGITMGELTKAVSTGTVEAKQALSLMFVGLRAENENAAKDMMQTYTGALAQLQTSFTLFADRVGQAGYLDSLSKGMKELASIMNSAEGISFANSLGSGLSTAIDGLRELAQWLAKNQELVISLGKVVAAMVAFKLMRAGIAGVIGTAGQMVNTFTKMSTVLQAPFNLGATAVTRFNRAARMGLAPIPSLIFAIRGAITGLQGAFAGLTAFIAANPIGAAFTVATVAVAGLITYMTMLRSETSKVVDEIRKIPEAMTAAKRAQMAARAAELEKQIQRDQQALKTGESVNYYSTAAGPVAVKESKEVVEARLKKNQEEYERTTGTMALGDGAVAKRLAKEAAESQIEKIRADNQVFSATFVKARQEALDKIQKINDDKSLSDDEKNKLLAPLREKVNKSYLEPAQKLVDDLSSRKNATEKQIAHFSDMLEKAKKEGNTEQVQKLQGSIRGYQEHLEAVAQELTQAEFERDSAAKTGKGVMSNQGTVLGLGTTDKAAQKALAQYMRNQMDSATYQRTLPDGTAMLDFEGKPIIGPKQLKTQLNLQKASSASSLEKMSDEERAAAIAALTKAREQDAAAAEKAGQRTANASQRAARKEENAQRKLAAGYQKALDKADQLMGQMGESSKATVSFDQSLRDTTKSLTELANAVPNEFITQEMIDKAKSRLADLANASDDYREMFNRRNVEQMISTWAPESDSIISAGYKPSREEKVVDFNDTYNRNLKALMDLRDQASDPKIVALYTKQINQLVAAGNTALIKETGTATQKLALEYENLADQLENSWSNLFSNMTDTLTDFVMKGKMDFSSLAESILRDITNMVVKTQITLPLMNMLGMGTTAAGSSQSGNLLSGVASAVANQGVRMNAVNGDKSVGEATKETSSSVSGLGQTTQQTTSAIGSATNAIGSWVNGLFTSTEAKDAETKAVKTSIFSMQNLSSVTGALSAAFAMLGANMSGSGNKWLSFGATIASGLVSAWAGGGFDNIGSGSSGSNSGFNNLTGSASDGTGGIPAIPKFAKGGIFGKDGVVPLRAYQKGGIADSPQLALFGEGDMNEAYVPLPDGRSIPVTLNAEGVKGGGGGVFSPVSIEINVNSDGSVSENSNSEGAWSQAAQRMKAIALETIAQEKRPGGSLNPNSQRN
>CP029247.1|AXM02189.1|55794_56064_-|hypothetical-protein
MSPLELLGVPLTMFWMLSRNIDRLRAEEDVRNLQVARAAQADGEGVKAFMEGLQLRIGRPVVTDKVYDPRKDKADPDAKEQLMQIFGRG
>CP029247.1|AXM02190.1|56144_56462_-|hypothetical-protein
MTKLLDLDSILPPKKSIKFGGQEYPIVEMTVGLFVSIKQMEGKDLQNMSPVEQVTAYADLVRKVIPSVPDAVLGKLTVPQLQQIFTFAMEVIDEENEKAAGEGAK
>CP029247.1|AXM02191.1|56521_57268_-|hypothetical-protein
MSNTHVKNIKLGACKVSFGGVDLGYTKGGVQVEVATETLKVTVDQLGQTTISELVQGRNITITAPLAESVLQNMVDLMPGSTLSEEDNAVTITSAQGVNLIDVAKELVLTPQDTTDYVLTIPKAATAGNFTMTYQSDDVRVFSVQFTAYPDDDGVLGKMSGPKPVKTVSISPESPEVKAGETVQLTAQITPADAGDKTGVWESDNQEKATVDQTGLVRGVAEGSANISFTSNSGGKKATKAVTVNSAE
>CP029247.1|AXM02192.1|57342_57726_-|hypothetical-protein
MFIEAFASLMQKAKIGTVGTDIFCHYMPANVKSGVLLVTPNTGITIDHELKGFYHDSFTVIVRNATITKAVAKANKIMDMFPVEETVSEGVYFRLVRPMSMPITYPKNEGSLIEAGIPIEFAGYLLN
>CP029247.1|AXM02193.1|57727_58201_-|hypothetical-protein
MGLKYDAHQFKRAGDRLNNSQKAFKRYLIRDMEKLARLVERLARAMAPLETGSLESAIFARVVKEGYTGLRIELSVSGAKPREGHPGVEVGDYAEYMELGKYRLGYLSRMKSVTNPPVAGVKPRVGPLFLERAVQISEKQFTQTIAEAARKAGFTRG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
CP029247_1	1.1\|40170\|42\|CP029247\|CRISPRCasFinder	40170-40211	42	NZ_CP030078	Enterobacter hormaechei strain 20710 plasmid p4-20710, complete sequence	40190-40231	1.0
CP029247_1	1.1\|40170\|42\|CP029247\|CRISPRCasFinder	40170-40211	42	NZ_CP029247	Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 plasmid pOSUEC_F, complete sequence	40170-40211	1.0
CP029247_1	1.1\|40170\|42\|CP029247\|CRISPRCasFinder	40170-40211	42	NZ_KX015668	Enterobacter cloacae strain CY01 plasmid pCY-CTX, complete sequence	69193-69234	1.0

1. spacer 1.1|40170|42|CP029247|CRISPRCasFinder matches to NZ_CP030078 (Enterobacter hormaechei strain 20710 plasmid p4-20710, complete sequence) position: , mismatch: 0, identity: 1.0

gactctgcttttgtataagcctgtccagctggggtatagctc	CRISPR spacer
gactctgcttttgtataagcctgtccagctggggtatagctc	Protospacer
******************************************

2. spacer 1.1|40170|42|CP029247|CRISPRCasFinder matches to NZ_CP029247 (Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 plasmid pOSUEC_F, complete sequence) position: , mismatch: 0, identity: 1.0

gactctgcttttgtataagcctgtccagctggggtatagctc	CRISPR spacer
gactctgcttttgtataagcctgtccagctggggtatagctc	Protospacer
******************************************

3. spacer 1.1|40170|42|CP029247|CRISPRCasFinder matches to NZ_KX015668 (Enterobacter cloacae strain CY01 plasmid pCY-CTX, complete sequence) position: , mismatch: 0, identity: 1.0

gactctgcttttgtataagcctgtccagctggggtatagctc	CRISPR spacer
gactctgcttttgtataagcctgtccagctggggtatagctc	Protospacer
******************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 107660

127

Salmonella_phage(94.74%)

tail,integrase,terminase,capsid,protease

attL 1058:1080|attR 108283:108305

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXM02138.1\|0_1056_+	replication protein RepA	J9Q7H0	Salmonella_phage	1.5e-185	98.0
1058:1080	attL	NA	NA	NA	NA
AXM02139.1\|1624_1837_-	hypothetical protein	J9Q7S8	Salmonella_phage	3.1e-34	98.6
AXM02140.1\|1836_2172_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.0e-56	98.2
AXM02141.1\|2168_2348_-	hypothetical protein	J9Q6J1	Salmonella_phage	1.6e-20	96.6
AXM02258.1\|2388_2664_-	hypothetical protein	J9Q738	Salmonella_phage	2.7e-46	96.7
AXM02259.1\|2732_3143_-	hypothetical protein	J9Q7G9	Salmonella_phage	1.1e-75	97.8
AXM02142.1\|3658_4489_-\|protease	serine protease	J9Q7Z4	Salmonella_phage	1.1e-127	99.3
AXM02143.1\|4492_4693_-	hypothetical protein	J9Q6J0	Salmonella_phage	9.3e-25	93.9
AXM02144.1\|4784_5861_-	recombinase	J9Q736	Salmonella_phage	5.5e-204	99.7
AXM02145.1\|5863_6130_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
AXM02146.1\|6129_7074_-	exonuclease	J9Q7S6	Salmonella_phage	4.0e-182	99.7
AXM02147.1\|7134_8163_-	regulator	J9Q7Z3	Salmonella_phage	1.3e-165	99.7
AXM02148.1\|8282_8756_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.3e-72	99.3
AXM02149.1\|8934_9186_+	hypothetical protein	NA	NA	NA	NA
AXM02150.1\|9258_9822_+	DNA-binding protein	J9Q7G7	Salmonella_phage	9.0e-65	66.1
AXM02151.1\|9851_10295_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.8e-72	100.0
AXM02152.1\|10291_13810_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.7
AXM02153.1\|13784_13988_-	hypothetical protein	J9Q6I7	Salmonella_phage	1.2e-32	98.5
AXM02154.1\|13990_15226_-	porphyrin biosynthesis protein	J9Q733	Salmonella_phage	6.0e-239	99.8
AXM02155.1\|15322_17731_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	92.1
AXM02156.1\|17840_18053_-	hypothetical protein	NA	NA	NA	NA
AXM02157.1\|18316_18703_+	transcriptional regulator	NA	NA	NA	NA
AXM02158.1\|18694_19801_-\|integrase	integrase	A0A1P8DTG6	Proteus_phage	5.6e-26	32.6
AXM02159.1\|19972_20389_-	hypothetical protein	NA	NA	NA	NA
AXM02160.1\|20379_20904_-	hypothetical protein	NA	NA	NA	NA
AXM02161.1\|21000_21246_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	2.9e-12	43.6
AXM02162.1\|21245_21611_-	hypothetical protein	K7PH35	Enterobacteria_phage	1.5e-36	65.6
AXM02163.1\|21626_21830_-	hypothetical protein	A0A0B6VT64	Edwardsiella_phage	4.4e-06	49.2
AXM02164.1\|21840_22674_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	7.0e-90	65.1
AXM02165.1\|22821_24054_+	hypothetical protein	NA	NA	NA	NA
AXM02166.1\|25059_25365_-	C-type natriuretic protein	J9Q7S1	Salmonella_phage	1.2e-47	98.0
AXM02167.1\|25361_25514_-	hypothetical protein	J9Q7Z1	Salmonella_phage	4.0e-20	100.0
AXM02260.1\|25513_25720_-	hypothetical protein	J9Q6I3	Salmonella_phage	2.8e-32	100.0
AXM02168.1\|25709_25886_-	hypothetical protein	J9Q729	Salmonella_phage	1.3e-22	93.1
AXM02169.1\|25885_27208_-	DNA ligase	J9Q7G5	Salmonella_phage	2.8e-258	99.3
AXM02261.1\|27242_27500_-	hypothetical protein	J9Q7R9	Salmonella_phage	1.2e-35	96.5
AXM02262.1\|27410_27752_+	hypothetical protein	NA	NA	NA	NA
AXM02170.1\|27800_28595_-	hypothetical protein	J9Q7Z0	Salmonella_phage	2.1e-112	76.5
AXM02171.1\|28781_30035_+	sel1 repeat family protein	NA	NA	NA	NA
AXM02172.1\|30026_31238_-	DNA primase	J9Q720	Salmonella_phage	3.7e-209	93.8
AXM02173.1\|31300_32641_-	DNA helicase	J9Q7G4	Salmonella_phage	1.5e-246	99.3
AXM02174.1\|32701_33427_-	hypothetical protein	J9Q7R8	Salmonella_phage	2.7e-138	97.9
AXM02175.1\|33691_34489_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	7.3e-12	26.4
AXM02176.1\|34529_34889_-	hypothetical protein	J9Q7G3	Salmonella_phage	2.3e-45	100.0
AXM02177.1\|34888_35554_-	plasmid stability protein	J9Q7R7	Salmonella_phage	4.7e-113	95.0
AXM02178.1\|35882_36152_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AXM02179.1\|36155_36680_+	N-acetyltransferase	NA	NA	NA	NA
AXM02180.1\|36706_37048_-	hypothetical protein	J9Q7G2	Salmonella_phage	6.9e-28	80.6
AXM02181.1\|37116_37809_-	hypothetical protein	J9Q7Y7	Salmonella_phage	3.9e-126	96.1
AXM02182.1\|37822_38146_-	hypothetical protein	J9Q6E7	Salmonella_phage	8.0e-50	97.2
AXM02183.1\|39366_39798_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.5e-16	53.8
AXM02184.1\|48670_49261_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	9.0e-100	91.8
AXM02185.1\|49248_50046_-\|tail	phage tail protein	J9Q7R4	Salmonella_phage	3.5e-155	95.1
AXM02186.1\|50038_50770_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.9e-137	100.0
AXM02187.1\|50826_51162_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.2e-60	99.1
AXM02188.1\|51203_55787_-\|tail	phage tail tape measure protein	J9Q712	Salmonella_phage	0.0e+00	91.2
AXM02189.1\|55794_56064_-	hypothetical protein	J9Q7F7	Salmonella_phage	8.4e-37	100.0
AXM02190.1\|56144_56462_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.7e-49	97.1
AXM02191.1\|56521_57268_-	hypothetical protein	J9Q7Y4	Salmonella_phage	6.8e-129	98.4
AXM02192.1\|57342_57726_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.7e-67	100.0
AXM02193.1\|57727_58201_-	hypothetical protein	J9Q711	Salmonella_phage	2.3e-82	100.0
AXM02194.1\|58191_58536_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
AXM02195.1\|58633_59467_-	hypothetical protein	J9Q7R2	Salmonella_phage	1.3e-152	99.6
AXM02196.1\|59466_59901_-	hypothetical protein	J9Q7Y3	Salmonella_phage	8.1e-74	99.3
AXM02197.1\|59944_60868_-	hypothetical protein	J9Q6D6	Salmonella_phage	9.6e-157	99.7
AXM02198.1\|60942_61818_-\|capsid	phage major capsid protein	J9Q710	Salmonella_phage	8.5e-163	99.7
AXM02199.1\|61844_62738_-	hypothetical protein	J9Q7F4	Salmonella_phage	3.3e-138	91.6
AXM02200.1\|62760_64335_-	hypothetical protein	J9Q7R1	Salmonella_phage	3.5e-300	98.9
AXM02201.1\|64368_65625_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
AXM02202.1\|65627_66269_-	DNA-binding protein	J9Q6D4	Salmonella_phage	3.4e-108	98.1
AXM02203.1\|66464_66731_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
AXM02204.1\|66740_67640_-	hypothetical protein	J9Q7I6	Salmonella_phage	8.2e-169	99.7
AXM02205.1\|67636_67891_-	hypothetical protein	J9Q7U0	Salmonella_phage	4.1e-41	98.8
AXM02206.1\|67883_68522_-	adenylyl-sulfate kinase	J9Q807	Salmonella_phage	3.8e-112	100.0
AXM02207.1\|68518_69187_-	chromosome partitioning protein ParB	J9Q6L1	Salmonella_phage	4.3e-114	99.1
AXM02208.1\|69186_69885_-	chromosome partitioning protein ParB	J9Q756	Salmonella_phage	2.5e-125	99.1
AXM02209.1\|69949_71509_+	ATP-dependent helicase	J9Q7I4	Salmonella_phage	9.8e-295	99.4
AXM02210.1\|71511_71790_+	hypothetical protein	J9Q7T9	Salmonella_phage	1.3e-40	98.9
AXM02211.1\|71855_72380_+	hypothetical protein	NA	NA	NA	NA
AXM02212.1\|72423_73224_-	hypothetical protein	A0A0M4QWT0	Salmonella_phage	9.3e-07	39.0
AXM02213.1\|73338_73851_+	transcriptional regulator	J9Q6L0	Salmonella_phage	3.1e-56	68.2
AXM02214.1\|74168_74819_+	hypothetical protein	J9Q754	Salmonella_phage	3.5e-113	98.6
AXM02215.1\|74869_75073_+	hypothetical protein	J9Q7I3	Salmonella_phage	8.3e-29	97.0
AXM02216.1\|75714_76197_-	hypothetical protein	J9Q805	Salmonella_phage	7.1e-87	96.9
AXM02217.1\|76209_76443_-	hypothetical protein	NA	NA	NA	NA
AXM02263.1\|76402_76690_-	ABC transporter	J9Q753	Salmonella_phage	6.6e-48	97.8
AXM02218.1\|76810_77206_-	hypothetical protein	J9Q7I1	Salmonella_phage	1.2e-42	66.2
AXM02219.1\|77334_77646_-	hypothetical protein	J9Q7T7	Salmonella_phage	7.9e-47	96.1
AXM02220.1\|77786_78005_-	hypothetical protein	J9Q804	Salmonella_phage	6.4e-35	98.6
AXM02221.1\|78009_78231_-	hypothetical protein	J9Q6K7	Salmonella_phage	1.4e-34	98.6
AXM02222.1\|79870_80176_+	hypothetical protein	NA	NA	NA	NA
AXM02264.1\|80213_80531_-	hypothetical protein	J9Q750	Salmonella_phage	3.9e-49	83.8
AXM02223.1\|80530_80767_-	DUF1380 domain-containing protein	J9Q7H8	Salmonella_phage	1.6e-39	97.4
AXM02224.1\|80852_81119_-	hypothetical protein	J9Q7T5	Salmonella_phage	3.1e-31	70.5
AXM02225.1\|81305_81509_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	6.8e-31	97.0
AXM02226.1\|81564_82263_-	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	2.0e-114	91.8
AXM02227.1\|82301_82853_-	hypothetical protein	J9Q748	Salmonella_phage	2.3e-97	92.3
AXM02228.1\|82849_83491_-	HD domain-containing protein	J9Q7H7	Salmonella_phage	1.4e-114	99.1
AXM02229.1\|83582_83954_-	hypothetical protein	J9Q7T4	Salmonella_phage	7.2e-63	99.2
AXM02230.1\|83956_84238_-	hypothetical protein	J9Q801	Salmonella_phage	3.6e-46	97.8
AXM02231.1\|84234_84924_-	hypothetical protein	J9Q6K2	Salmonella_phage	5.2e-107	87.7
AXM02232.1\|84981_86685_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	99.3
AXM02233.1\|86808_87381_-	hypothetical protein	J9Q7H6	Salmonella_phage	8.2e-98	98.9
AXM02234.1\|87489_88332_-	hypothetical protein	J9Q7T3	Salmonella_phage	2.1e-70	71.1
AXM02235.1\|88440_88629_-	hypothetical protein	J9Q800	Salmonella_phage	1.2e-26	100.0
AXM02236.1\|88638_89133_-	hypothetical protein	J9Q6J9	Salmonella_phage	2.1e-81	98.2
AXM02237.1\|89275_89884_-	ribonuclease HI	J9Q745	Salmonella_phage	2.2e-117	99.5
AXM02238.1\|90479_90710_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.1e-36	100.0
AXM02239.1\|90913_91507_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	1.9e-110	98.5
AXM02240.1\|91692_92619_-	hypothetical protein	J9Q7Z9	Salmonella_phage	3.7e-108	92.9
AXM02241.1\|92663_93221_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	7.0e-102	99.5
AXM02242.1\|93230_93650_-	hypothetical protein	J9Q743	Salmonella_phage	6.4e-68	97.8
AXM02243.1\|93713_94358_-	hypothetical protein	J9Q7H4	Salmonella_phage	5.2e-117	100.0
AXM02244.1\|94357_94834_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	1.4e-90	100.0
AXM02245.1\|94830_95244_-	hypothetical protein	J9Q7Z8	Salmonella_phage	4.7e-71	97.8
AXM02246.1\|95245_96361_-	thymidylate synthase	J9Q6J6	Salmonella_phage	2.4e-218	98.9
AXM02247.1\|96538_97408_-	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	3.9e-160	98.3
AXM02248.1\|97490_98633_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	1.7e-219	100.0
AXM02249.1\|98740_101056_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	99.7
AXM02250.1\|101133_101703_-	hypothetical protein	J9Q7Z7	Salmonella_phage	5.8e-104	100.0
AXM02251.1\|101714_102461_-	hypothetical protein	J9Q6J5	Salmonella_phage	3.4e-136	98.4
AXM02252.1\|102450_104367_-	exonuclease	J9Q741	Salmonella_phage	0.0e+00	98.6
AXM02253.1\|104363_104600_-	hypothetical protein	J9Q7H1	Salmonella_phage	1.1e-29	98.4
AXM02254.1\|104596_105682_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	5.9e-206	98.6
AXM02255.1\|105910_106414_+	hypothetical protein	J9Q7Z6	Salmonella_phage	5.5e-90	98.2
AXM02256.1\|106445_106940_-	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	7.8e-89	98.2
AXM02257.1\|107015_107660_-	hypothetical protein	J9Q739	Salmonella_phage	6.3e-123	98.6
108283:108305	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029246

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029248

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP029247

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection