CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP031472	Vibrio coralliilyticus strain RE22 chromosome 1, complete sequence	1 crisprs	csx1,DEDDh,DinG,csa3,cas3	2
CP031474	Vibrio coralliilyticus strain RE22 plasmid p337, complete sequence	0 crisprs	PD-DExK,csa3	0
CP031473	Vibrio coralliilyticus strain RE22 chromosome 2, complete sequence	0 crisprs	csa3,cas3,DEDDh,WYL,RT,PD-DExK	2

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP031472_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031472_1

3035784-3036213

Orphan

Consensus_repeat	Method
TAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGAAGGTTCGAATCCTCC	PILER-CR

3 spacers

The CRISPR arrays of CP031472_1

>merge|CP031472|1|3035784-3036213|PILER-CR
TAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGGAGGTTCGAATCCTCCAGGACGCGCCACTCATTAAGGTCACTGACCTGATATTGATTATATTGATATCAAACATTGCGCGCTCGTAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGAAGGTTCGAATCCTTCCGAGCGCGCCATTACTTTGTTTAGTAAGTTTAAAACTTGTTGAACACCCCGTGCGTCCTTAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGGAGGTTCGAATCCTCCAGGACGCGCCACTCATTAAGGTCACTGACCTGATGTTGATTATTCAATATCAAACACTGCGCGCTCGTAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGAAGGTTCGAATCCTTC

>CP031472|1|1|3035784-3036213|PILER-CR
TAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGGAGGTTCGAATCCTCC	AGGACGCGCCACTCATTAAGGTCACTGACCTGATATTGATTATATTGATATCAAACATTGCGCGCTCG
TAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGAAGGTTCGAATCCTTC	CGAGCGCGCCATTACTTTGTTTAGTAAGTTTAAAACTTGTTGAACACCCCGTGCGTCCT
TAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGGAGGTTCGAATCCTCC	AGGACGCGCCACTCATTAAGGTCACTGACCTGATGTTGATTATTCAATATCAAACACTGCGCGCTCG
TAGCTCAGCTGGATAGAGTACCTGGCTACGAACCAGGCGGTCGAAGGTTCGAATCCTTC

Protein	Signature genes	Signature genes Name	Protein_function
CP031472.1\|AXN32352.1\|3038750_3039881_+\|sodium-ion-translocating-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|377182
CP031472.1\|AXN32349.1\|3034865_3035063_+\|carbon-storage-regulator	unknown	unknown	gnl\|CDD\|234973
CP031472.1\|AXN32868.1\|3029073_3030120_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
CP031472.1\|AXN32344.1\|3025740_3028305_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
CP031472.1\|AXN32346.1\|3030202_3030667_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
CP031472.1\|AXN32869.1\|3044373_3045942_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
CP031472.1\|AXN32343.1\|3024617_3025688_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP031472.1\|AXN32350.1\|3036667_3036925_+\|oxaloacetate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|235161
CP031472.1\|AXN32341.1\|3021810_3023319_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP031472.1\|AXN32353.1\|3039993_3040944_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
CP031472.1\|AXN32348.1\|3033585_3034773_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|181563
CP031472.1\|AXN32342.1\|3023510_3024614_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
CP031472.1\|AXN32345.1\|3028389_3028893_+\|nicotinamide-nucleotide-amidase	unknown	unknown	gnl\|CDD\|179627
CP031472.1\|AXN32351.1\|3036956_3038741_+\|oxaloacetate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|237592
CP031472.1\|AXN32354.1\|3040937_3041399_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
CP031472.1\|AXN32357.1\|3047134_3047611_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
CP031472.1\|AXN32355.1\|3041407_3044266_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
CP031472.1\|AXN32870.1\|3045981_3046548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227105
CP031472.1\|AXN32356.1\|3046570_3047089_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
CP031472.1\|AXN32347.1\|3030808_3033391_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701

Protein	Function_ID	Function_description	E-value
CP031472.1\|AXN32352.1\|3038750_3039881_+\|sodium-ion-translocating-decarboxylase-subunit-beta	gnl\|CDD\|377182	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit. Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.	0
CP031472.1\|AXN32349.1\|3034865_3035063_+\|carbon-storage-regulator	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	6.52098e-35
CP031472.1\|AXN32868.1\|3029073_3030120_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
CP031472.1\|AXN32344.1\|3025740_3028305_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
CP031472.1\|AXN32346.1\|3030202_3030667_+\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	2.92089e-57
CP031472.1\|AXN32869.1\|3044373_3045942_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
CP031472.1\|AXN32343.1\|3024617_3025688_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP031472.1\|AXN32350.1\|3036667_3036925_+\|oxaloacetate-decarboxylase-subunit-gamma	gnl\|CDD\|235161	PRK03814, PRK03814, oxaloacetate decarboxylase subunit gamma; Provisional.	1.10239e-38
CP031472.1\|AXN32341.1\|3021810_3023319_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP031472.1\|AXN32353.1\|3039993_3040944_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.36301e-100
CP031472.1\|AXN32348.1\|3033585_3034773_+\|aspartate-kinase	gnl\|CDD\|181563	PRK08841, PRK08841, aspartate kinase; Validated.	0
CP031472.1\|AXN32342.1\|3023510_3024614_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	3.49806e-131
CP031472.1\|AXN32345.1\|3028389_3028893_+\|nicotinamide-nucleotide-amidase	gnl\|CDD\|179627	PRK03661, PRK03661, nicotinamide-nucleotide amidase.	3.31855e-70
CP031472.1\|AXN32351.1\|3036956_3038741_+\|oxaloacetate-decarboxylase-subunit-alpha	gnl\|CDD\|237592	PRK14040, PRK14040, oxaloacetate decarboxylase subunit alpha.	0
CP031472.1\|AXN32354.1\|3040937_3041399_+\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	8.76768e-31
CP031472.1\|AXN32357.1\|3047134_3047611_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	3.5495e-18
CP031472.1\|AXN32355.1\|3041407_3044266_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.95765e-82
CP031472.1\|AXN32870.1\|3045981_3046548_+\|hypothetical-protein	gnl\|CDD\|227105	COG4764, COG4764, Uncharacterized protein conserved in bacteria [Function unknown].	8.3268e-73
CP031472.1\|AXN32356.1\|3046570_3047089_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	4.53165e-103
CP031472.1\|AXN32347.1\|3030808_3033391_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0

>CP031472.1|AXN32349.1|3034865_3035063_+|carbon-storage-regulator
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGNTASGNY
>CP031472.1|AXN32348.1|3033585_3034773_+|aspartate-kinase
MKKPLIVQKFGGTSVGSIERIHKVAEHIIKAKNDGNQVVVVVSAMSGETNRLLDLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTIESWLAQDNIVIVAGFQGMNENGDITTLGRGGSDTSAVTLAGSLQAEECQIFTDVDGIYTCDPRTVPSAKKLDVIDFPSMEEMARKGAKVLHLPSVQYAWRHNVPLRVLSTFDSNTGSLVKGSECQKAICGVAIQRELTMLKVDRDAFCGLEKQCQMLGVTIWNVIDHAEWVGAVIKHDAYAKLELVFGDKIRNSEEVSLLTAVGLQVEGLVEQSYALLSEQGIDVMHYAVNSQSLMLVLSPEYVDKAANILHDAYITSAEALDCQQKHAFLG
>CP031472.1|AXN32347.1|3030808_3033391_+|alanine--tRNA-ligase
MYMSTDEVRNSFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPKDRLLVTVYETDDEAFDIWHKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCTEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERISAIMQGVHSNYEIDVFQKLIKAAADTIGYEDLSNQSLRVIADHIRSCSFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGTAGEELKKQQAVVEKVLRIEEENFGRTLERGMTILSEALDNLDGKVLDGETVFKLYDTYGFPADLTNDVAREREFTIDEAGFEKAMEAQRQRAREAGQFGTDYNATIKSDVDSEFCGYTATEGKSKVVEIFVEGEAAESLSAGDQAILILGETPFYAESGGQCGDAGVLKTESGVFNVQDTQKLGNAIAHHGVLAEGVLAKGDDVEAVVDAERRAAISLNHSATHLLHAALRKVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRRNHNIETNIMDIESAKQKGAMALFGEKYDDEVRVLSMGEFSTELCGGIHAENTGDIGLFKITSEGGIAAGIRRIEAVTGEAALDAIEQQQAKYEEKLAESASKAKALEKEIQKLKDKMAAAESANIMGKAQEINGIKVLIAAMQDADPKNLRTMVDDIKNQMGSGVVMLANINGEKIGLIAGVTKDLIGKVKAGDLVKMVAEQVGGKGGGRPDMAQAGGTDVEALPDAIKSVQPWLEERL
>CP031472.1|AXN32346.1|3030202_3030667_+|recombination-regulator-RecX
MFQRKPPTLSSKEAAIQLLSRRDHGEYELYQKLAMKGYEEEEIQEAVNFCLDHNYLDDLRYAKSQIRQHVYKGHGERRIRQELNQKRVSESVIEKAFEEEPQDWFELAKQAAEKKFKGVKAKDQKEYAKQVRFLQYRGYSFEQISYALSNEDGS
>CP031472.1|AXN32868.1|3029073_3030120_+|recombinase-RecA
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFNREGELIDLGVKNKLVEKAGAWYSYNGDKIGQGKANACKYLRENPAAAQQIDTKLRELLLTPAEIQPDDAELGEMPEQEEL
>CP031472.1|AXN32345.1|3028389_3028893_+|nicotinamide-nucleotide-amidase
MKALQKLSQKLGEHLNHHNLILTTAESCTGGGVSAAITDIAGSSAWFDRAFITYSNEAKMEMLGVAEPTLVSHGAVSEETVIEMVQGAIKHSSANIGVSISGIAGPGGGSTEKPVGTVCFAWADENSWLKVATYHFDGDRAEVRHQAVEVAMKVLYEELEQRSTYSG
>CP031472.1|AXN32344.1|3025740_3028305_-|DNA-mismatch-repair-protein-MutS
MKAEQKHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVPFHAVEGYLAKLVQLGESVAICEQIGDPATSKGPVERQVVRIVTPGTVTDEALLSERIDNLIAAIYHHDGKFGYATLDVTSGRFQLMEPETEEAMAAELQRTAPRELLFPEDFEPVELMAARNGNRRRPVWEFELDTAKQQLNQQFGTRDLVGFGVEQAHLGLCAAGCLIQYVKDTQRTALPHIRSLTYDRQDHSVILDAATRRNLEITQNLAGGTDNTLAEVIDHTATPMGSRMLKRWLHQPMRDINTLNHRLDAISELKELTLFADLHPILKQIGDIERILARLALRSARPRDMARLRHAMQQLPELAETMGTLAHPYLTKLGQYAAPQEAVCELLERAIKENPPVVIRDGGVIAEGYNAELDEWRKLADGATEYLEKMEQDERERHGIDTLKVGYNNVHGFFIQVSRGQSHLVPPHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALALEKQLWEELFDLLMPHLEKLQNLASAISQIDVLQNLAERADSLDYCRPVMSQEPGIHIQSGRHPVVEQVMDEPFIANPIELNPQRKMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESAQIGSIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATTNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKELGSMTLFATHYFELTELPNQIPHLANVHLDAVEHGDTIAFMHAVQEGAASKSYGLAVAGLAGVPKSVIKNARAKLTQLEQLSQGESSSVTSSAVDIANQLSLIPEPSEVEEALSGIDPDDLTPRQALEELYRLKKLL
>CP031472.1|AXN32343.1|3024617_3025688_+|LPS-export-ABC-transporter-permease-LptG
MFKILDLYIGRTIIATTSLVLATFVGLSAIIKYVEQLRKVGQGSYDLLQALFYVLLSIPRDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGYSKLDIGLSVLKTAVPLMVLVTLLGQWGAPQAQKMARDLRAFTTSGGAIMSVRTGVWARDANDFIFIGKVEDDKLYGLSMWRYNDDKQLESVVHAAEVDYLSDNTWVMKDVQLTEMADEVEITKTSLPEYRWTTSLAPDKLAVVTVKPEELSLSGLYDYVTYLKASEQDASRYELALWRKVTQPFSIAVMMLMALSFIFGPLRSVTMGARILSGVVAGFTFYISSEFFGPLSLVYSIPPVFGAVMPSIVFLTVALALLRRKL
>CP031472.1|AXN32342.1|3023510_3024614_+|LPS-export-ABC-transporter-permease-LptF
MIIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASDGDIPASLVMHYVSLSMPSMGLLMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAAANAFVFSPMSQEKLIQLQEEVEAENSVDLLQKGQFQGTPDGSSVVFIDDIEGKQLKHVFVAQMRPRDSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTDFDQYEGLIGQRDVKPKGRDWEAIPTMQLVSNPDPRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKMGPAILIYLAYFLSISATKSALEDGSIPSFIGMWPINAALLLTAIGINSMDSIPVRRFKDKLRQRKKAV
>CP031472.1|AXN32341.1|3021810_3023319_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPVAEQLDKISDGYISSLLRRGDLEGKPGQMLLLHQVPGVLSERVLLVGCGKERELGERQYKEIIQKTINTLNETGSMEAVCFLTELHVKGRDTYWKVRQAVEATKDGLYTFDQFKSVKPETRRPLRKLVFNVPTRRELNLGEKAITHGLAISSGVKASKDLGNMPPNIANPAYLASQARRLADDYDTITTKIIGEQEMEKLGMTSYLAVGRGSKNESMMSIMEYKGNPDPEAKPIVLVGKGLTFDSGGISLKPGEGMDEMKYDMCGAASVFGTMKSLAKLNLPINVIGVLAGCENMPGSNAYRPGDILTTMSGQTVEVLNTDAEGRLVLCDALTYVERFEPDCVVDVATLTGACVIALGHHISGVISNHNPLSHELVNASEQASDRAWRLPMADEYHEQLKSPFADMANIGGRPGGTITAGCFLSKFAKKYNWAHVDIAGTAWKSGAAKGSTGRPVSMLVQFLLNRSGQETEE
>CP031472.1|AXN32350.1|3036667_3036925_+|oxaloacetate-decarboxylase-subunit-gamma
MENIGSLLVDAATLMLTGMAVVFIFLTILVYLVRLMSKLVPEEVPEPIATPKQNNKIQPTSSAISPKVVAAISAAVHQHRTSTAK
>CP031472.1|AXN32351.1|3036956_3038741_+|oxaloacetate-decarboxylase-subunit-alpha
MSKPLALTDVVLRDAHQSLFATRMRLEDMLPIAAELDKVGYWSLETWGGATFDSCIRFLGEDPWERLRALKKAMPNTPMQMLLRGQNLLGYRHYADDVVEKFVERAHANGMDVFRIFDAMNDVRNFQKAVKAAVDVGAHAQGTLSYTTSPVHNTDTWVDLAKRLEDLGCHSLCIKDMSGLLKPYEAEELITRIKSSTDIPLALHCHATTGLSTATAVKAVEAGVDILDTAISSMSCTYGHTPTETVVAMLQGTERDTNLKLDQIEPIAAYFREVRKKYAKFEGQLKGVDSRILIAQVPGGMLTNMESQLKEQGAADRIDEVLDEIPRVREDLGFIPLVTPTSQIVGTQAVINILTGERYKSITKETAGVLKGEYGAAPAEVNAELQAKVLDGAEAITCRPADLLEAELDTLTEDLLAKAKQDSISLAEDTVDDVLTYALFPQVGLKFLKNRHNPDAFEPAPGKEEPVASPAPQAAQGGIETYSVKVDGQVYDVEVGPQGQLTSVAPANSTPQQASPAPAAQSGNSEMVPAPLAGNIFKVNVQSGAQVEEGEVLLILEAMKMETEVRAARGGIVQDLHVKEGDSVTVGAPLLSLA
>CP031472.1|AXN32352.1|3038750_3039881_+|sodium-ion-translocating-decarboxylase-subunit-beta
MDGLMTLWSETGIANFEFGQICMILVGCILLFLAIRKGFEPLLLLPIGFGAILANIPNAGFTDEGGLLYYVYYVGIESGIFPLLIFMGVGAMTDFGALIANPKTLWLGAAAQFGIFATLFGAILLNYVPGMEFSMPDAASIAIIGGADGPTAIFLASKLSPDLLGAIAVAAYSYMALVPIIQPPIMKALTTPEERKVKMAQLRHVGKAEKILFPLAVLLMTILFLPSATPLVGMFCLGNLMREAGVVDRLSKTAQNELINIVTIFLGLGVGSKLQAEEFLNVETLGILALGAVAFSIGTAGGVLMAKLLNKFSKEDINPLIGAAGVSAVPMAARVVNKVGLDANPQNFLLMHAMGPNVAGVLGSAVAAGILLALVN
>CP031472.1|AXN32353.1|3039993_3040944_+|NADP-dependent-oxidoreductase
MENKQIAITQFGDPDVLAVQTNAVPEPQQGEVLVKVAFAGVNPIDVKTRAGLGWAASQNKDNLPWVPGYDISGEVVTCGEQAKRFVAGDKVAGFIGFPLQGGGYSQYVCVPEAELSLVPESITLEAAAVLPLAGQTAVQALDKASVQEGQRVLILAGAGGVGHIAIQVAVAAKAEVFTTCSEANLDYMATLGAHAVNYQFSPVSERVEEADVLIDLVGGDAALDALKCLKDGAKVVTVPTITAELICEKAKLLGFEATGMLVDPNPEQLDALIYMVSVGLLKTEIQHIYPMDQVMDAHKQIETGHTRGKILLDMQC
>CP031472.1|AXN32354.1|3040937_3041399_+|DedA-family-protein
MLEAFNAAFESIALWFSDSALWVLFLSGFLSATLLPGGSEAGLIATLSLNQFSTLSIIAVATAGNTLGGLTNYWLGLWLPNRTQNEKHGHKALQWLSKYGYWSLLFSWLPVIGDPLCLAAGWLRMRFWPCLWLIMIGKALRYSLLAALYYGFF
>CP031472.1|AXN32355.1|3041407_3044266_+|insulinase-family-protein
MRKIWLGAFSLVALYGCANNPLSSDSHLSSLPQGVSLIEEVKAEPGKAMIPYSKYQLDNGLTVILSPDDSDPLVHVDVTYHVGSAREEIGKSGFAHFFEHMMFQGSEHVGDQEHFKIITEAGGTLNGTTNRDRTNYFETVPSNQLEKMLWLESDRMGFLLDAVSQRKFEIQRDTVKNERAQNFDNRPYGLMWERMGEALYPEGHPYSWQTIGYVEDLDRVDVNDLKAFFLRWYGPNNAVLTIGGDIDVEQTLQWVNKYFGSIPKGPEVKQAPKQPAVLKEDKYITLEDRIQQPMVLLGWPTTYRGEKTEASLNALANVLGKGANSLLYQELVKTQKAVDAGAFQECSELSCNFYVYAMAPSGEKGKLKPLYEELMQTLQKFEDQGVDQARLDQITGMAEASAVFALQSVRGKVSQLAANQTFFGQPDRLQTQLEQIRAVSPESVMKAYEDFVNGHHKVTLSVVPKGKLDYVVKPATFITPERTLPEHKKIKDQDLAYRRPVDNFDRSVMPEVAEAVKAQMPKLYKLYFDNGAELLGTQSSETPTVQLEIRFPAGERYVEQGKEGLANLTAAMMEEGTLDSTVEQLQARLDKLGSTVSISAANYTTSISVSSLEKNLPQTLAIVEEVLFKPAFNESDFERNKQQMLEGIVYQHQKPSWLASQATRQVLFSGSIYQRPSDGTKESVETLTLDDVKAFYRQHYTPHGAQIVVVGDITKRQVKNELAFLENWQGQEAPLLRPQLVNEKGLQKIYLIDKPSSPQSIVRFVRQGLPFDATGEVYLTQLANFNLAGNFNSRINQNLREDKGYTYGASGYFAANREVGAIVFSAQVRADSTVASIKEIEKELSKYSENGMTDEEMKFLRLAVGQQDALKYETPSQKAQLLSSILAYSLDEDYLKQRNEIVDTVSKDTLNQMAAKWFTPDAYQIIVVGDAKSLKPQLESLQIPVEELEIVR
>CP031472.1|AXN32869.1|3044373_3045942_+|glutamate--cysteine-ligase
MTDFAARLERVAQTPDVFQSFGRGVERETLRYKKDGRLATTPHPQELGSAYANDWITTDFSESLLEFITPVSSDIKTLTAQLEDIHHFTQTKLGEEKMWPLSMPCYVSQEDDINLAQYGSSNSGKMKTLYREGLKRRYGSLMQIISGVHFNFSFPESFWDALYGQQSEQERQTTKSEAYFGLIRNYYRFGWLIPYFFGASPALCSSFIQGRDTKLPFENIGETLYLPHATSLRMSDLGYTNSAQSVLKIGFNSLEEYLDGLNAAIRTPSAEFAEIGVKVDGEYRQLNSNVLQIENELYAPIRPKRVAKGGEKPSEALSRGGVEYIEVRALDVNPYSPIGIDEDQIRFLDLFLTWAAITESEPMDFCEQACWRENWNKVIESGRKPGLELQIGCKGEILSLQDWAQRVFDEITLIAEKMDAAVDGEAYQSVCDKLMTWINNPELTISGQLLADTKRLGGLGKVGCEFGLQYREKHLNHAFQVYSAQVMEQEVDRSRAAQVDTEQADILSFDEFLDDYFAYLKS
>CP031472.1|AXN32870.1|3045981_3046548_+|hypothetical-protein
MVLGGCSTAPPKNQSNLCEIFREHQDWYDDAADMQEEWGTPIQVAMAFVKQESSFRHDARPPKDYLLGIIPWGRVSSAYGYAQAQDPAWEDFQKATGHGGSRTNFDDSLMFIGWYTSETQKQLGISKWDPYNQYLAYHEGRGGYKRKSYQSKPSLIKVARKVEQQAKDYGWQLKQCQQELESNRSWFF
>CP031472.1|AXN32356.1|3046570_3047089_+|S-ribosylhomocysteine-lyase
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISPMGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQTIIDAGIKVNLNDELALPESMLKELKVD
>CP031472.1|AXN32357.1|3047134_3047611_-|RDD-family-protein
MSTTDTLPPAGLMRRLGALFYDALIVIAIEMMAAGIVIAVLHALVAMGGFNAAPYADVSDFLTNHPIWGPVYTLYLAVVWIYFFVFFWTRAGQTLGMRAWKIQVRNADGSAISVTQALIRIATSGFGLANLTVPIDPKKRGFHDIWAKTQVVVLPKAQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1878896 : 1885580

Staphylococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXN31363.1\|1878896_1879367_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-32	48.0
AXN31364.1\|1879544_1880654_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-65	39.6
AXN31365.1\|1880734_1881385_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.7e-36	37.7
AXN31366.1\|1881387_1882494_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.9e-44	33.1
AXN31367.1\|1882501_1882951_-	transcriptional regulator NrdR	NA	NA	NA	NA
AXN31368.1\|1883181_1884432_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.5e-99	49.0
AXN31369.1\|1884446_1885580_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7

DBSCAN-SWA_2

3201203 : 3210520

Faustovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXN32481.1\|3201203_3202418_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	6.3e-31	29.9
AXN32482.1\|3202468_3202852_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.2e-52	78.2
AXN32483.1\|3202919_3203243_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.2e-24	50.5
AXN32484.1\|3203298_3203814_+	co-chaperone HscB	NA	NA	NA	NA
AXN32485.1\|3203833_3205687_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.0e-109	40.3
AXN32486.1\|3205700_3206039_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
AXN32487.1\|3206062_3206257_+	Fe-S assembly protein IscX	NA	NA	NA	NA
AXN32488.1\|3206419_3207718_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	5.3e-36	34.7
AXN32489.1\|3207776_3208205_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	5.5e-22	42.9
AXN32490.1\|3208432_3210520_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-61	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

74768 : 125701

Vibrio_phage(66.67%)

plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXN32933.1\|74768_75179_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AXN32934.1\|75197_76946_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXN32935.1\|76942_77941_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXN32936.1\|78009_78462_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AXN32937.1\|78499_81895_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AXN32938.1\|81897_83235_-	type VI secretion protein	NA	NA	NA	NA
AXN32939.1\|83733_84336_+	hypothetical protein	NA	NA	NA	NA
AXN32940.1\|84348_85734_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AXN32941.1\|85726_86227_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AXN32942.1\|86238_87564_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AXN32943.1\|87560_88352_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AXN32944.1\|88821_91869_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	1.3e-306	50.7
AXN32945.1\|91949_93302_+	melibiose:sodium transporter MelB	NA	NA	NA	NA
AXN32946.1\|93544_94552_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXN32947.1\|94566_95298_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXN32948.1\|95484_96561_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXN32949.1\|96562_97618_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXN32950.1\|97614_100677_+	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA
AXN32951.1\|101314_102055_+	SDR family oxidoreductase	NA	NA	NA	NA
AXN32952.1\|102066_103275_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
AXN32953.1\|103334_103682_+	phasin family protein	NA	NA	NA	NA
AXN32954.1\|103740_105525_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
AXN32955.1\|105696_106389_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
AXN32956.1\|106385_107555_+	MFS transporter	NA	NA	NA	NA
AXN32957.1\|107617_108859_-	thermolabile hemolysin	NA	NA	NA	NA
AXN32958.1\|109341_112098_-\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
AXN32959.1\|112796_114353_-	AbgT family transporter	NA	NA	NA	NA
AXN32960.1\|114752_116522_-	alkaline phosphatase	NA	NA	NA	NA
AXN32961.1\|116667_118371_-	CoA-disulfide reductase	NA	NA	NA	NA
AXN32962.1\|118525_118837_+	transcriptional regulator	NA	NA	NA	NA
AXN32963.1\|118839_119250_+	YeeE/YedE family protein	NA	NA	NA	NA
AXN32964.1\|119260_119710_+	YeeE/YedE family protein	NA	NA	NA	NA
AXN32965.1\|119737_120628_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
AXN32966.1\|120922_123043_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.2e-263	63.3
AXN32967.1\|123149_123617_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	1.0e-50	62.9
AXN32968.1\|123778_124969_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AXN32969.1\|125044_125701_+\|protease	ATP-dependent Zn protease	NA	NA	NA	NA

DBSCAN-SWA_2

1679778 : 1691962

uncultured_Caudovirales_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXN34291.1\|1679778_1681470_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-29	31.6
AXN34292.1\|1681523_1682000_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AXN34293.1\|1682283_1682937_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
AXN34294.1\|1682984_1683959_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N7CCA3	Skermania_phage	9.9e-128	72.1
AXN34295.1\|1683975_1686108_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A0D3MSW9	Lactococcus_phage	7.0e-203	49.7
AXN34296.1\|1686088_1686499_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	6.6e-17	42.4
AXN34297.1\|1686495_1686720_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	2.7e-12	50.0
AXN34298.1\|1686907_1687276_+	iron-sulfur cluster assembly accessory protein	A0A0P0CQC4	Ostreococcus_lucimarinus_virus	2.4e-10	33.0
AXN34299.1\|1687278_1688742_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AXN34300.1\|1688747_1689494_+	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	1.1e-09	30.7
AXN34301.1\|1689468_1690740_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
AXN34302.1\|1690732_1691962_+	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	1.2e-90	42.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031472

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection