CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031550	Escherichia coli strain cq9 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0
CP031547	Escherichia coli strain cq9 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0
CP031549	Escherichia coli strain cq9 plasmid unnamed3, complete sequence	0 crisprs	csa3,DEDDh	0	2
CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	0	6
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5 crisprs	cas3,DEDDh,WYL,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	6	12

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

81547 : 121434

Escherichia_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10430.1\|81547_82552_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AXO10431.1\|86223_86505_-\|transposase	transposase	NA	NA	NA	NA
AXO10432.1\|88244_88535_+	DUF1010 domain-containing protein	NA	NA	NA	NA
AXO10433.1\|88540_89332_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AXO10434.1\|89593_90853_+	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
AXO10435.1\|90945_91737_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AXO10436.1\|91906_92239_+	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
AXO10437.1\|92378_92564_+	hypothetical protein	NA	NA	NA	NA
AXO10438.1\|93418_94210_-	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
AXO10439.1\|94679_94925_-	hypothetical protein	NA	NA	NA	NA
AXO10440.1\|94962_95826_-	SDR family NAD(P)-dependent oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
AXO10441.1\|96915_97731_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AXO10442.1\|97920_98625_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
AXO10443.1\|100015_100723_-	EAL domain-containing protein	NA	NA	NA	NA
AXO10444.1\|100719_100956_-	mercury resistance protein	NA	NA	NA	NA
AXO10445.1\|100952_101315_-	transcriptional regulator	NA	NA	NA	NA
AXO10446.1\|101332_103027_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AXO10552.1\|103078_103501_-	mercury transporter MerC	NA	NA	NA	NA
AXO10447.1\|103536_103812_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
AXO10448.1\|103825_104176_-	mercuric ion transporter MerT	NA	NA	NA	NA
AXO10449.1\|104247_104682_+	mercuric resistance operon regulatory protein	NA	NA	NA	NA
AXO10450.1\|104728_105433_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AXO10451.1\|105479_105752_-	hypothetical protein	NA	NA	NA	NA
AXO10553.1\|105932_106106_+	toxin-antitoxin system, antitoxin component, AbrB family protein	NA	NA	NA	NA
AXO10452.1\|106047_106278_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AXO10453.1\|106274_106691_+	PIN domain-containing protein	NA	NA	NA	NA
AXO10454.1\|106852_108991_-	AAA family ATPase	NA	NA	NA	NA
AXO10455.1\|109344_109602_+	hypothetical protein	NA	NA	NA	NA
AXO10456.1\|109601_110192_+	hypothetical protein	NA	NA	NA	NA
AXO10457.1\|110454_112011_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
AXO10458.1\|112202_112820_+	proQ/FINO family protein	NA	NA	NA	NA
AXO10459.1\|113112_114246_-	permease	NA	NA	NA	NA
AXO10460.1\|114351_114675_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AXO10461.1\|114775_115486_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.1e-95	73.4
AXO10462.1\|117924_118629_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AXO10463.1\|118665_119007_-	hypothetical protein	NA	NA	NA	NA
AXO10464.1\|119521_119632_-	hypothetical protein	E4ZFP9	Streptococcus_phage	1.9e-08	88.6
AXO10465.1\|119636_120374_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	6.3e-135	99.6
AXO10466.1\|120499_120595_-	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA
AXO10467.1\|120729_121434_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

159705 : 186119

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10506.1\|159705_160893_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10507.1\|160892_161258_-\|transposase	transposase	NA	NA	NA	NA
AXO10508.1\|161185_162280_-	phosphohydrolase	H7BVI4	unidentified_phage	1.2e-44	29.7
AXO10509.1\|162548_163157_+	hypothetical protein	NA	NA	NA	NA
AXO10510.1\|163161_163683_+	hypothetical protein	NA	NA	NA	NA
AXO10511.1\|163685_164207_+	hypothetical protein	NA	NA	NA	NA
AXO10558.1\|164333_164777_+	hypothetical protein	NA	NA	NA	NA
AXO10512.1\|164766_165081_+	hypothetical protein	NA	NA	NA	NA
AXO10513.1\|165085_165940_+	hypothetical protein	NA	NA	NA	NA
AXO10514.1\|165921_166899_+	S49 family peptidase	Q9JMP1	Wolbachia_phage	7.1e-17	31.5
AXO10515.1\|166914_167775_+	DsbA family protein	NA	NA	NA	NA
AXO10516.1\|167808_168237_+	hypothetical protein	NA	NA	NA	NA
AXO10517.1\|168293_168653_+	hypothetical protein	A0A076G835	Escherichia_phage	5.6e-20	49.4
AXO10518.1\|168652_169099_+	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA
AXO10519.1\|169095_169614_+	nitrite reductase	NA	NA	NA	NA
AXO10520.1\|169613_169844_+	hypothetical protein	NA	NA	NA	NA
AXO10521.1\|169830_170688_+	hypothetical protein	NA	NA	NA	NA
AXO10522.1\|170713_170902_+	hypothetical protein	NA	NA	NA	NA
AXO10523.1\|170918_171446_+	nuclease	O64020	Bacillus_phage	1.3e-09	37.0
AXO10524.1\|171503_171776_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	4.2e-20	59.6
AXO10525.1\|171863_172157_+	chromosome segregation protein ParM	NA	NA	NA	NA
AXO10526.1\|172183_172486_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXO10527.1\|172490_172841_-	diaminopimelate decarboxylase	NA	NA	NA	NA
AXO10528.1\|173003_173552_+	transcriptional regulator	NA	NA	NA	NA
AXO10529.1\|173641_173893_+	hypothetical protein	NA	NA	NA	NA
AXO10530.1\|173892_174087_+	hypothetical protein	NA	NA	NA	NA
AXO10531.1\|174097_174469_+	hypothetical protein	NA	NA	NA	NA
AXO10532.1\|174461_174932_+	hypothetical protein	NA	NA	NA	NA
AXO10533.1\|174946_175288_-	hypothetical protein	NA	NA	NA	NA
AXO10534.1\|175405_175867_+	DUF1643 domain-containing protein	B5WZV8	Pseudomonas_phage	1.5e-46	60.5
AXO10535.1\|175869_176367_+	hypothetical protein	NA	NA	NA	NA
AXO10536.1\|176581_177286_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO10537.1\|177836_178541_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO10538.1\|178574_179066_-	hypothetical protein	NA	NA	NA	NA
AXO10539.1\|179172_179910_+	resolvase	NA	NA	NA	NA
AXO10540.1\|179906_180131_+	hypothetical protein	NA	NA	NA	NA
AXO10541.1\|180341_181835_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10542.1\|181865_182750_+	DUF3363 domain-containing protein	NA	NA	NA	NA
AXO10543.1\|182966_184181_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
AXO10544.1\|184208_184514_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXO10545.1\|184625_186119_+\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031548

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 113282

112

Stx2-converting_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10113.1\|323_1049_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.9e-65	51.6
AXO10114.1\|1078_2650_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
AXO10115.1\|2669_3017_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AXO10116.1\|3112_3694_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	8.8e-15	48.4
AXO10117.1\|3670_3790_+	copper resistance protein	NA	NA	NA	NA
AXO10118.1\|3777_3894_+	hypothetical protein	NA	NA	NA	NA
AXO10119.1\|3935_4100_-	heat-stable enterotoxin ST-IA/ST-P domain protein	NA	NA	NA	NA
AXO10120.1\|4083_4302_-	ST-Ia family heat-stable enterotoxin	NA	NA	NA	NA
AXO10121.1\|5529_5895_+\|transposase	transposase	NA	NA	NA	NA
AXO10122.1\|5894_7082_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10123.1\|9095_9311_+	heat-stable enterotoxin ST-II	NA	NA	NA	NA
AXO10124.1\|11796_12162_+\|transposase	transposase	NA	NA	NA	NA
AXO10125.1\|12161_13349_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10126.1\|13625_13991_+\|transposase	transposase	NA	NA	NA	NA
AXO10127.1\|13990_15178_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10128.1\|18788_19301_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
AXO10129.1\|19312_22387_+	RTX toxin hemolysin A	NA	NA	NA	NA
AXO10130.1\|22458_24582_+	alpha-hemolysin translocation ATP-binding protein HlyB	W8CYL7	Bacillus_phage	1.7e-47	29.9
AXO10131.1\|24600_26037_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AXO10322.1\|27826_28333_+	thiol peroxidase	NA	NA	NA	NA
AXO10132.1\|28552_28813_-	EAL domain-containing protein	NA	NA	NA	NA
AXO10133.1\|29288_30104_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXO10134.1\|31121_32024_-	F18 fimbrial adhesin subunit FedF	NA	NA	NA	NA
AXO10135.1\|32321_32861_-	F18 fimbrial subunit FedE	NA	NA	NA	NA
AXO10323.1\|32823_33507_-	F18 fimbrial chaperone FedD	NA	NA	NA	NA
AXO10136.1\|33508_35923_-	F18 fimbrial usher protein FedC	NA	NA	NA	NA
AXO10324.1\|36015_36531_-	F18 fimbrial major subunit FedA	NA	NA	NA	NA
AXO10137.1\|37945_38206_-	hypothetical protein	NA	NA	NA	NA
AXO10138.1\|38224_38590_+\|transposase	transposase	NA	NA	NA	NA
AXO10139.1\|38589_39777_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10140.1\|40257_41094_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA
AXO10141.1\|42327_42579_+	plasmid stabilization protein	NA	NA	NA	NA
AXO10142.1\|42568_42850_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.8e-24	62.4
AXO10143.1\|42995_43319_+	hypothetical protein	A0A0K1LL53	Rhodobacter_phage	7.0e-14	46.1
AXO10144.1\|43363_43609_+	hypothetical protein	NA	NA	NA	NA
AXO10145.1\|43598_43814_+	hypothetical protein	NA	NA	NA	NA
AXO10146.1\|44202_45390_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10147.1\|45389_45755_-\|transposase	transposase	NA	NA	NA	NA
AXO10148.1\|46032_47220_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10149.1\|47219_47585_-\|transposase	transposase	NA	NA	NA	NA
AXO10150.1\|47861_49094_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10151.1\|49048_49414_-\|transposase	transposase	NA	NA	NA	NA
AXO10152.1\|51046_51310_+	hypothetical protein	NA	NA	NA	NA
AXO10153.1\|51607_51904_+	hypothetical protein	NA	NA	NA	NA
AXO10154.1\|53242_53716_+	hypothetical protein	NA	NA	NA	NA
AXO10155.1\|54138_54504_+\|transposase	transposase	NA	NA	NA	NA
AXO10156.1\|54503_55691_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10157.1\|55967_56333_+\|transposase	transposase	NA	NA	NA	NA
AXO10158.1\|56332_57520_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10159.1\|57796_58162_+\|transposase	transposase	NA	NA	NA	NA
AXO10160.1\|58161_59349_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10161.1\|59829_60666_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA
AXO10162.1\|61899_62151_+	plasmid stabilization protein	NA	NA	NA	NA
AXO10163.1\|62140_62422_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.8e-24	62.4
AXO10164.1\|62567_62891_+	hypothetical protein	A0A0K1LL53	Rhodobacter_phage	7.0e-14	46.1
AXO10165.1\|62935_63181_+	hypothetical protein	NA	NA	NA	NA
AXO10166.1\|63170_63386_+	hypothetical protein	NA	NA	NA	NA
AXO10167.1\|63774_64962_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10168.1\|64961_65327_-\|transposase	transposase	NA	NA	NA	NA
AXO10169.1\|65603_66791_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10170.1\|66790_67156_-\|transposase	transposase	NA	NA	NA	NA
AXO10171.1\|67433_68621_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10172.1\|68620_68986_-\|transposase	transposase	NA	NA	NA	NA
AXO10173.1\|70618_70882_+	hypothetical protein	NA	NA	NA	NA
AXO10174.1\|71179_71476_+	hypothetical protein	NA	NA	NA	NA
AXO10175.1\|72814_73288_+	hypothetical protein	NA	NA	NA	NA
AXO10176.1\|73710_74076_+\|transposase	transposase	NA	NA	NA	NA
AXO10177.1\|74075_75263_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10178.1\|75539_75905_+\|transposase	transposase	NA	NA	NA	NA
AXO10179.1\|75904_77092_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10180.1\|77368_77734_+\|transposase	transposase	NA	NA	NA	NA
AXO10181.1\|77733_78921_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10182.1\|79203_79479_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXO10183.1\|79478_79763_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
AXO10184.1\|80672_81542_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AXO10325.1\|81522_81597_-	positive regulator of RepFIC repA1 expression	NA	NA	NA	NA
AXO10326.1\|81685_81790_+	replication protein RepA	NA	NA	NA	NA
AXO10185.1\|81833_82088_-	replication regulatory protein repA2	NA	NA	NA	NA
AXO10327.1\|82352_82583_-	hypothetical protein	NA	NA	NA	NA
AXO10186.1\|82746_83346_-	hypothetical protein	NA	NA	NA	NA
AXO10187.1\|83732_83933_-	hypothetical protein	NA	NA	NA	NA
AXO10188.1\|84064_84625_-	fertility inhibition protein FinO	NA	NA	NA	NA
AXO10189.1\|84679_85423_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	2.4e-09	30.5
AXO10190.1\|85442_90713_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
AXO10191.1\|90712_92902_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
AXO10192.1\|92952_93756_-	hypothetical protein	NA	NA	NA	NA
AXO10193.1\|93892_94627_-	complement resistance protein TraT	NA	NA	NA	NA
AXO10194.1\|94656_95154_-	entry exclusion protein	NA	NA	NA	NA
AXO10195.1\|95172_97992_-	conjugal transfer protein TraG	NA	NA	NA	NA
AXO10196.1\|97988_99362_-	conjugal transfer protein TraH	NA	NA	NA	NA
AXO10197.1\|99348_99774_-	conjugal transfer protein TrbF	NA	NA	NA	NA
AXO10198.1\|99727_100102_-	conjugal transfer protein TrbJ	NA	NA	NA	NA
AXO10199.1\|99998_100544_-	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
AXO10200.1\|100530_100815_-	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
AXO10201.1\|100895_101210_+	toxin ArtA	NA	NA	NA	NA
AXO10202.1\|101211_101559_-	conjugal transfer protein TrbA	NA	NA	NA	NA
AXO10203.1\|101574_102348_-	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
AXO10204.1\|102310_102571_-	conjugal transfer protein TrbE	NA	NA	NA	NA
AXO10205.1\|102594_103995_-	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
AXO10206.1\|104041_105613_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-168	58.5
AXO10207.1\|105632_105980_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	5.2e-47	77.6
AXO10208.1\|105979_106630_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-16	43.1
AXO10209.1\|106747_106987_-	hypothetical protein	NA	NA	NA	NA
AXO10328.1\|107005_107164_-	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA
AXO10210.1\|108575_109010_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
AXO10211.1\|109064_111023_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	6.2e-20	29.7
AXO10212.1\|111086_111320_-	DUF905 domain-containing protein	NA	NA	NA	NA
AXO10213.1\|111375_111906_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	1.0e-46	78.1
AXO10214.1\|111931_112138_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AXO10215.1\|112165_112633_+	hypothetical protein	NA	NA	NA	NA
AXO10216.1\|112613_112808_+	hypothetical protein	NA	NA	NA	NA
AXO10217.1\|112718_113282_-	class I SAM-dependent methyltransferase	A0A2I7RQ20	Vibrio_phage	2.3e-20	39.3

DBSCAN-SWA_2

118167 : 118515

Stx2-converting_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10221.1\|118167_118515_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	5.2e-47	77.6

DBSCAN-SWA_3

121687 : 165937

Stx2-converting_phage(27.78%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10225.1\|121687_122341_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.5e-23	38.4
AXO10226.1\|122920_123319_+	reverse transcriptase	A0A0U4J920	Pseudomonas_phage	6.2e-28	56.4
AXO10227.1\|123322_124894_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-168	58.5
AXO10228.1\|124913_125261_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	5.2e-47	77.6
AXO10229.1\|125260_125911_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-16	43.1
AXO10230.1\|126233_127402_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.6e-180	98.0
AXO10231.1\|127461_127602_+	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA
AXO10232.1\|127881_128139_+	replication regulatory protein RepA2	NA	NA	NA	NA
AXO10331.1\|128160_128289_-	replication protein RepA	NA	NA	NA	NA
AXO10330.1\|128372_128447_+	RepA leader peptide Tap	NA	NA	NA	NA
AXO10233.1\|128439_129462_+	replication initiation protein	NA	NA	NA	NA
AXO10234.1\|130377_130647_+	hypothetical protein	NA	NA	NA	NA
AXO10235.1\|130643_130925_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXO10332.1\|131244_131799_+	3'-5' exonuclease	K7RFY5	Vibrio_phage	4.9e-23	40.6
AXO10236.1\|132031_133108_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXO10237.1\|135106_135481_-	heat-labile enterotoxin LT subunit B	D1GID8	Vibrio_virus	1.1e-50	79.8
AXO10238.1\|135477_136254_-	heat-labile enterotoxin LT subunit A	A0A023W6A1	Vibrio_virus	4.9e-122	80.2
AXO10239.1\|136719_136902_-	hypothetical protein	NA	NA	NA	NA
AXO10240.1\|137120_137834_+	hypothetical protein	NA	NA	NA	NA
AXO10241.1\|138045_139017_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AXO10333.1\|141200_141914_-\|transposase	transposase	NA	NA	NA	NA
AXO10242.1\|142217_142916_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.8e-116	87.3
AXO10243.1\|145420_145915_-	MarR family transcriptional regulator	NA	NA	NA	NA
AXO10334.1\|147996_148104_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXO10335.1\|148356_148533_+	serine/threonine protein kinase	NA	NA	NA	NA
AXO10244.1\|148653_149394_+	site-specific recombinase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
AXO10245.1\|149678_150656_-	repFIB replication protein A	J9Q7H0	Salmonella_phage	1.4e-100	59.2
AXO10246.1\|150965_151445_-	hypothetical protein	NA	NA	NA	NA
AXO10247.1\|151582_151870_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	A0A2H4JBF4	uncultured_Caudovirales_phage	2.2e-19	47.4
AXO10248.1\|151866_152118_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AXO10249.1\|152290_152503_-	hypothetical protein	NA	NA	NA	NA
AXO10250.1\|152492_152678_+	hypothetical protein	NA	NA	NA	NA
AXO10251.1\|152876_154082_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.8e-203	88.9
AXO10252.1\|154078_155041_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	4.0e-113	68.2
AXO10253.1\|156218_156362_+	DUF1281 domain-containing protein	NA	NA	NA	NA
AXO10254.1\|156368_156728_+	hypothetical protein	NA	NA	NA	NA
AXO10255.1\|156791_157103_+	hypothetical protein	NA	NA	NA	NA
AXO10256.1\|158754_159405_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-16	43.1
AXO10257.1\|159723_160911_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO10258.1\|160910_161276_-\|transposase	transposase	NA	NA	NA	NA
AXO10259.1\|161599_163171_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-168	58.5
AXO10260.1\|163405_163717_+	hypothetical protein	NA	NA	NA	NA
AXO10261.1\|164227_164443_-	hypothetical protein	NA	NA	NA	NA
AXO10262.1\|164578_165139_-	fertility inhibition protein FinO	NA	NA	NA	NA
AXO10263.1\|165193_165937_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	1.9e-09	30.5

DBSCAN-SWA_4

190622 : 190844

Vibrio_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10283.1\|190622_190844_-	conjugal transfer protein TraR	A2I309	Vibrio_virus	2.0e-07	40.8

DBSCAN-SWA_5

198789 : 206434

Yersinia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10296.1\|198789_199719_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	1.9e-43	38.2
AXO10297.1\|199728_200016_-	hypothetical protein	NA	NA	NA	NA
AXO10337.1\|200562_200721_-	stable plasmid inheritance protein	NA	NA	NA	NA
AXO10298.1\|200995_201715_-	protein PsiA	NA	NA	NA	NA
AXO10299.1\|201711_202146_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
AXO10300.1\|202200_204159_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.5e-21	29.6
AXO10301.1\|204222_204456_-	DUF905 domain-containing protein	NA	NA	NA	NA
AXO10302.1\|204517_205057_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	5.2e-46	74.8
AXO10303.1\|205082_205289_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AXO10304.1\|205765_205960_+	hypothetical protein	NA	NA	NA	NA
AXO10305.1\|205870_206434_-	class I SAM-dependent methyltransferase	A0A2I7RQ20	Vibrio_phage	2.3e-20	39.3

DBSCAN-SWA_6

212101 : 220442

Vibrio_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10313.1\|212101_212785_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.3e-28	37.4
AXO10314.1\|213167_214139_-	DUF1281 domain-containing protein	NA	NA	NA	NA
AXO10315.1\|214508_215468_+	plasmid stabilization protein	A0A222YXF2	Escherichia_phage	4.2e-62	40.9
AXO10316.1\|215467_215863_+	plasmid stabilization protein	NA	NA	NA	NA
AXO10317.1\|216004_216916_-	TIR domain-containing protein	NA	NA	NA	NA
AXO10318.1\|217004_218192_-	hypothetical protein	A0A2I6UI42	Bacillus_phage	3.4e-05	28.7
AXO10319.1\|218455_218737_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXO10320.1\|218733_219003_-	hypothetical protein	NA	NA	NA	NA
AXO10321.1\|219269_220442_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	7.0e-229	99.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031546

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP031546_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031546_1

664253-664402

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031546_1

>merge|CP031546|1|664253-664402|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>CP031546|1|1|664253-664402|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTG
CGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP031546.1\|AXO05478.1\|660786_663642_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP031546.1\|AXO05479.1\|663641_664085_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
CP031546.1\|AXO05489.1\|675189_676209_-\|aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
CP031546.1\|AXO05474.1\|657203_658217_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
CP031546.1\|AXO05477.1\|659536_660733_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
CP031546.1\|AXO05486.1\|672586_673351_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
CP031546.1\|AXO05470.1\|654146_654740_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP031546.1\|AXO05484.1\|670139_671138_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
CP031546.1\|AXO05487.1\|673374_674406_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
CP031546.1\|AXO05488.1\|674622_675186_+\|thermosensitive-gluconokinase	unknown	unknown	gnl\|CDD\|182097
CP031546.1\|AXO05480.1\|664438_665950_-\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP031546.1\|AXO05485.1\|671204_672524_-\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
CP031546.1\|AXO05471.1\|654884_655337_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
CP031546.1\|AXO05483.1\|668559_670062_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
CP031546.1\|AXO05482.1\|667316_668399_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP031546.1\|AXO05476.1\|658840_659344_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP031546.1\|AXO05481.1\|666216_667317_+\|lipopolysaccharide-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
CP031546.1\|AXO05473.1\|657043_657151_+\|DNA-binding-protein	unknown	unknown	unknown
CP031546.1\|AXO05472.1\|655459_657043_+\|DNA-binding-protein	unknown	unknown	unknown
CP031546.1\|AXO05475.1\|658378_658795_+\|regulator-of-ribonuclease-activity-B	unknown	unknown	gnl\|CDD\|236876

Protein	Function_ID	Function_description	E-value
CP031546.1\|AXO05478.1\|660786_663642_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP031546.1\|AXO05479.1\|663641_664085_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	3.51045e-66
CP031546.1\|AXO05489.1\|675189_676209_-\|aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.21683e-169
CP031546.1\|AXO05474.1\|657203_658217_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
CP031546.1\|AXO05477.1\|659536_660733_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	2.18869e-150
CP031546.1\|AXO05470.1\|654146_654740_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.0374e-10
CP031546.1\|AXO05484.1\|670139_671138_-\|transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
CP031546.1\|AXO05487.1\|673374_674406_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
CP031546.1\|AXO05488.1\|674622_675186_+\|thermosensitive-gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
CP031546.1\|AXO05480.1\|664438_665950_-\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP031546.1\|AXO05486.1\|672586_673351_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
CP031546.1\|AXO05471.1\|654884_655337_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.90686e-69
CP031546.1\|AXO05483.1\|668559_670062_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP031546.1\|AXO05482.1\|667316_668399_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP031546.1\|AXO05476.1\|658840_659344_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.01499e-18
CP031546.1\|AXO05481.1\|666216_667317_+\|lipopolysaccharide-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
CP031546.1\|AXO05485.1\|671204_672524_-\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP031546.1\|AXO05475.1\|658378_658795_+\|regulator-of-ribonuclease-activity-B	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69

>CP031546.1|AXO05479.1|663641_664085_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTIDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>CP031546.1|AXO05478.1|660786_663642_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>CP031546.1|AXO05477.1|659536_660733_+|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSRNGVRFSFNCSLKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>CP031546.1|AXO05476.1|658840_659344_-|N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>CP031546.1|AXO05475.1|658378_658795_+|regulator-of-ribonuclease-activity-B
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>CP031546.1|AXO05474.1|657203_658217_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSKLNN
>CP031546.1|AXO05473.1|657043_657151_+|DNA-binding-protein
MYEYINNEQLGKLNPPENLRIAIEKFGWKKKTITA
>CP031546.1|AXO05472.1|655459_657043_+|DNA-binding-protein
MSKISGWNFSQNITSADNCKQKNEDLDTWYVGMNDFARIAGGQNSRSNILSPRAFLEFLAKIFTLGYVDFSKRSNEAGRNMMAHIKSSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLASAFNNGIREGHTVIIFTQPDGSTNRYEGKSFERKDESSLHLITNKILACYQREANKEIARLLNIPQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVCNESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIDSILEIFLKFPYINDVRILDWCFNKRMQYFGDSEKIKYACSVINHIDFSRDQSKDFSCDQSKIKIAETLFFNLDKEHYKNSRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILVNDIFLKDFFMKQPDFAKWYFYQLIKKYEGEQLYLNELGYVYGNEEKTNEIVKKHPGYVIKIFEEKMGNELKIRTRMMKILRNGKINIYEYINI
>CP031546.1|AXO05471.1|654884_655337_+|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEACRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>CP031546.1|AXO05470.1|654146_654740_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPLARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTLLKE
>CP031546.1|AXO05480.1|664438_665950_-|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>CP031546.1|AXO05481.1|666216_667317_+|lipopolysaccharide-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAEPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>CP031546.1|AXO05482.1|667316_668399_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>CP031546.1|AXO05483.1|668559_670062_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>CP031546.1|AXO05484.1|670139_671138_-|transcriptional-regulator
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>CP031546.1|AXO05485.1|671204_672524_-|gluconate-permease
MPLIIIAAGVALLLILMIVFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>CP031546.1|AXO05486.1|672586_673351_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>CP031546.1|AXO05487.1|673374_674406_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>CP031546.1|AXO05488.1|674622_675186_+|thermosensitive-gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>CP031546.1|AXO05489.1|675189_676209_-|aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADY

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Crispr_ID: CP031546_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031546_2

1021009-1021124

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031546_2

>merge|CP031546|2|1021009-1021124|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>CP031546|2|2|1021009-1021124|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP031546.1\|AXO05788.1\|1008211_1009201_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP031546.1\|AXO05799.1\|1026537_1027236_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
CP031546.1\|AXO05796.1\|1021143_1022646_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP031546.1\|AXO05798.1\|1025659_1026424_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
CP031546.1\|AXO05797.1\|1022656_1024357_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP031546.1\|AXO05794.1\|1017822_1020174_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP031546.1\|AXO09714.1\|1024695_1025574_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP031546.1\|AXO05792.1\|1014080_1014740_-\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP031546.1\|AXO05800.1\|1027219_1028830_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
CP031546.1\|AXO05802.1\|1029952_1031608_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|184188
CP031546.1\|AXO05803.1\|1031696_1031828_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
CP031546.1\|AXO05787.1\|1007393_1008215_-\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP031546.1\|AXO05795.1\|1020248_1020944_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP031546.1\|AXO05793.1\|1014751_1017658_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP031546.1\|AXO05801.1\|1028805_1029789_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
CP031546.1\|AXO05789.1\|1009200_1010487_-\|chaperone-SurA	unknown	unknown	gnl\|CDD\|236758
CP031546.1\|AXO05804.1\|1031929_1033108_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129977
CP031546.1\|AXO05791.1\|1013148_1013964_+\|molecular-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP031546.1\|AXO05786.1\|1007013_1007391_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP031546.1\|AXO05790.1\|1010539_1012894_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158

Protein	Function_ID	Function_description	E-value
CP031546.1\|AXO05788.1\|1008211_1009201_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP031546.1\|AXO05799.1\|1026537_1027236_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.49788e-164
CP031546.1\|AXO05796.1\|1021143_1022646_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP031546.1\|AXO05798.1\|1025659_1026424_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.3759e-49
CP031546.1\|AXO05797.1\|1022656_1024357_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP031546.1\|AXO05794.1\|1017822_1020174_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP031546.1\|AXO09714.1\|1024695_1025574_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP031546.1\|AXO05792.1\|1014080_1014740_-\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
CP031546.1\|AXO05800.1\|1027219_1028830_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
CP031546.1\|AXO05802.1\|1029952_1031608_-\|transcriptional-regulator	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
CP031546.1\|AXO05803.1\|1031696_1031828_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
CP031546.1\|AXO05787.1\|1007393_1008215_-\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
CP031546.1\|AXO05795.1\|1020248_1020944_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
CP031546.1\|AXO05793.1\|1014751_1017658_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP031546.1\|AXO05801.1\|1028805_1029789_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
CP031546.1\|AXO05789.1\|1009200_1010487_-\|chaperone-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP031546.1\|AXO05804.1\|1031929_1033108_+\|MFS-transporter	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP031546.1\|AXO05791.1\|1013148_1013964_+\|molecular-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.49529e-169
CP031546.1\|AXO05786.1\|1007013_1007391_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
CP031546.1\|AXO05790.1\|1010539_1012894_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>CP031546.1|AXO05795.1|1020248_1020944_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>CP031546.1|AXO05794.1|1017822_1020174_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYIRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>CP031546.1|AXO05793.1|1014751_1017658_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>CP031546.1|AXO05792.1|1014080_1014740_-|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>CP031546.1|AXO05791.1|1013148_1013964_+|molecular-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>CP031546.1|AXO05790.1|1010539_1012894_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNSL
>CP031546.1|AXO05789.1|1009200_1010487_-|chaperone-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>CP031546.1|AXO05788.1|1008211_1009201_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPLLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>CP031546.1|AXO05787.1|1007393_1008215_-|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>CP031546.1|AXO05786.1|1007013_1007391_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>CP031546.1|AXO05796.1|1021143_1022646_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>CP031546.1|AXO05797.1|1022656_1024357_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDTTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>CP031546.1|AXO09714.1|1024695_1025574_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIASVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>CP031546.1|AXO05798.1|1025659_1026424_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGG
>CP031546.1|AXO05799.1|1026537_1027236_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTNELLSGKASASALLGITG
>CP031546.1|AXO05800.1|1027219_1028830_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>CP031546.1|AXO05801.1|1028805_1029789_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>CP031546.1|AXO05802.1|1029952_1031608_-|transcriptional-regulator
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>CP031546.1|AXO05803.1|1031696_1031828_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>CP031546.1|AXO05804.1|1031929_1033108_+|MFS-transporter
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV

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Crispr_ID: CP031546_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031546_3

1230850-1231003

Orphan

Consensus_repeat	Method
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031546_3

>merge|CP031546|3|1230850-1231003|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

>CP031546|3|3|1230850-1231003|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	TTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGA
CGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP031546.1\|AXO05976.1\|1228356_1229097_-\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP031546.1\|AXO05969.1\|1216557_1220811_+\|RHS-repeat-family-protein	unknown	unknown	gnl\|CDD\|225750
CP031546.1\|AXO05973.1\|1224150_1226595_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
CP031546.1\|AXO05975.1\|1227618_1228386_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP031546.1\|AXO05986.1\|1238379_1239624_+\|esterase	unknown	unknown	gnl\|CDD\|235337
CP031546.1\|AXO05974.1\|1226834_1227413_+\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|179012
CP031546.1\|AXO05983.1\|1235488_1235755_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181972
CP031546.1\|AXO05979.1\|1231137_1232877_-\|flagellar-type-III-secretion-system-protein-FlhA	unknown	unknown	gnl\|CDD\|224217
CP031546.1\|AXO05984.1\|1236111_1237569_-\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP031546.1\|AXO05970.1\|1220822_1221272_+\|hypothetical-protein	unknown	unknown	unknown
CP031546.1\|AXO05978.1\|1230322_1230820_+\|transposase	unknown	unknown	gnl\|CDD\|224854
CP031546.1\|AXO05982.1\|1235274_1235463_-\|hypothetical-protein	unknown	unknown	unknown
CP031546.1\|AXO05985.1\|1237829_1238288_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP031546.1\|AXO05981.1\|1234729_1235182_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP031546.1\|AXO05972.1\|1223634_1224108_+\|inhibitor-of-vertebrate-lysozyme	unknown	unknown	gnl\|CDD\|182187
CP031546.1\|AXO05980.1\|1233677_1234733_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP031546.1\|AXO09719.1\|1232818_1233607_+\|putative-lateral-flagellar-export/assembly-protein-LafU	unknown	unknown	gnl\|CDD\|235860
CP031546.1\|AXO05977.1\|1229388_1230147_+\|peptidoglycan-endopeptidase	unknown	unknown	gnl\|CDD\|223862
CP031546.1\|AXO05971.1\|1222710_1223481_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|182461
CP031546.1\|AXO05987.1\|1239681_1240083_+\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882

Protein	Function_ID	Function_description	E-value
CP031546.1\|AXO05976.1\|1228356_1229097_-\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
CP031546.1\|AXO05969.1\|1216557_1220811_+\|RHS-repeat-family-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	9.21736e-135
CP031546.1\|AXO05973.1\|1224150_1226595_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
CP031546.1\|AXO05975.1\|1227618_1228386_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.29603e-146
CP031546.1\|AXO05986.1\|1238379_1239624_+\|esterase	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP031546.1\|AXO05983.1\|1235488_1235755_+\|hypothetical-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	1.93527e-42
CP031546.1\|AXO05979.1\|1231137_1232877_-\|flagellar-type-III-secretion-system-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP031546.1\|AXO05984.1\|1236111_1237569_-\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP031546.1\|AXO05974.1\|1226834_1227413_+\|phosphoheptose-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
CP031546.1\|AXO09719.1\|1232818_1233607_+\|putative-lateral-flagellar-export/assembly-protein-LafU	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	1.31154e-173
CP031546.1\|AXO05978.1\|1230322_1230820_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.32036e-43
CP031546.1\|AXO05985.1\|1237829_1238288_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	5.05624e-113
CP031546.1\|AXO05987.1\|1239681_1240083_+\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.11584e-87
CP031546.1\|AXO05972.1\|1223634_1224108_+\|inhibitor-of-vertebrate-lysozyme	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	9.39999e-93
CP031546.1\|AXO05980.1\|1233677_1234733_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP031546.1\|AXO05981.1\|1234729_1235182_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	4.77997e-103
CP031546.1\|AXO05977.1\|1229388_1230147_+\|peptidoglycan-endopeptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	3.3314e-41
CP031546.1\|AXO05971.1\|1222710_1223481_-\|amidohydrolase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0

>CP031546.1|AXO05978.1|1230322_1230820_+|transposase
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAGERIIL
>CP031546.1|AXO05977.1|1229388_1230147_+|peptidoglycan-endopeptidase
MSFMSSFLLGRFLHPGVFSLCVLLPLFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGENIRVSRLAEPFWQDHFLGARRILTEETIL
>CP031546.1|AXO05976.1|1228356_1229097_-|transpeptidase
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>CP031546.1|AXO05975.1|1227618_1228386_+|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>CP031546.1|AXO05974.1|1226834_1227413_+|phosphoheptose-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>CP031546.1|AXO05973.1|1224150_1226595_-|acyl-CoA-dehydrogenase
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLCSINVDDFDPEELATKPVKLPEKVRKVEAA
>CP031546.1|AXO05972.1|1223634_1224108_+|inhibitor-of-vertebrate-lysozyme
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>CP031546.1|AXO05971.1|1222710_1223481_-|amidohydrolase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQNDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMVALREYREKFPAWQDADEFRLR
>CP031546.1|AXO05970.1|1220822_1221272_+|hypothetical-protein
MMKYLMVLLSLFSGSVLGMGRVNELCGIDSVKTIEIINLPSYVTTLVPLSKEGLNEIYRYKVVVNEISDLYAGKIIDLLQMKYFRKEKYNNIRWGVSIISKGNNKCEIYFDAFGECGSVNGINVCFEKNEMIGWIKKEIPLLSQKIGGL
>CP031546.1|AXO05969.1|1216557_1220811_+|RHS-repeat-family-protein
MGGKPAARQGDMTRKGLDIVQGSAGVLIGAPTGVACSVCPGGITYANPVNPLLGAKVLPGETDLALPGPLPFILSRAYSSYRTRTPAPVGVFGPGWKAPFDIRLQIRDEGLILNDSGGRSIHFEPLFPGEISYSRSESLWLARGGVAAQHSSQPLSALWQVLPEDVRLSPHVYLATNSLQGPWWILSWPERVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDVAGAVTGVTDGAGRRFHLVLTTQAQRAEVFRKQRATSLSSPAGPRSASSSLVFPDTLPAGTGYGTDNGIRLEAVWLTHDPAYPDEQPTAPLARYTYTAGGELRAVYDRSGTQVRGFTYDAEHAGRMVAHHYAGRPESCYRYDDTGRVTEQVNPEGLDYRFEYGESRVIITDSLNRREVLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLTAETSRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDRYGQQIAVHREEGISTYSSYNPRGQLVSQKDAQGREIRYEYSAAGDLTATISPDGKRSTIEYDKRGRPVSVTEGGLTRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLITLWHYDASDRITHRTVNGDPAEQWQYDEHGWLTTLSHTCEGHRVSVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETARSFGGAGSTAGYEQATAYTLTGQLQSRHLNLPQLDCDYTWNDNGQLVRISGPQECREYRYSGTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAEYIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGEESAQHLQQSLRLPGQQYDEESGLYYNRNRYYDPLQGRYITQDPIGLRGEWNLYKYPLNPVRFIDSLGLKFHVNGDPSDFNQAVEYLKQDSQMKETIDFLSSSEETINIEYIEGTNVRFNSNNMAIYWNSRASLFCSTELNSKSQSPALGLGHEFAHAQYYLLDKENFMALLSRTDKKYENKEEARVITIIESRAAKTLGECTRGAHSGLPFYRVDGPLQTMKITGTPE
>CP031546.1|AXO05979.1|1231137_1232877_-|flagellar-type-III-secretion-system-protein-FlhA
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRISDNGDITHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>CP031546.1|AXO09719.1|1232818_1233607_+|putative-lateral-flagellar-export/assembly-protein-LafU
MVTTIKLIVNSVSKSERESIIAALHGQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRMR
>CP031546.1|AXO05980.1|1233677_1234733_+|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>CP031546.1|AXO05981.1|1234729_1235182_+|GNAT-family-N-acetyltransferase
MNNIQIRNYQPGDFQQLCAIFIRAVMMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQIVKQQHVECRGAWFTNFYMRYKPQH
>CP031546.1|AXO05982.1|1235274_1235463_-|hypothetical-protein
MYCDCVRSPQSLTLVSSWRFTRLSPSCNSNYLEYINIKNQEMADESRARKKELILERSAKSH
>CP031546.1|AXO05983.1|1235488_1235755_+|hypothetical-protein
MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPARRRGNGAGNRNGPLL
>CP031546.1|AXO05984.1|1236111_1237569_-|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQDILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIKSVGHYWTLLTELLKEIPAK
>CP031546.1|AXO05985.1|1237829_1238288_+|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDNYVVDIPQDTWIEQPWDMGVVFVPPISGR
>CP031546.1|AXO05986.1|1238379_1239624_+|esterase
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDDALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITGWIEKRLC
>CP031546.1|AXO05987.1|1239681_1240083_+|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDEPVKLTA

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Crispr_ID: CP031546_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031546_4

4018587-4018981

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

6 spacers

The CRISPR arrays of CP031546_4

>merge|CP031546|4|4018587-4018981|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCATATACAGCAAACCTTCAGAATGCATTCCGGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCCGTCTGCCTCCAGCCCAGCCCTGGATATTTCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGTTCACTCACGCAACGTCTGAGCGCGTTGACGGTTTATCCCCGCTGGCGCGGGGAACTCAGTATGCGTTCAATCACTGTCAGGCCTACTTCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTTGCCCGATGGACACTCCCAGACCATCAGCCGGTTTATCCCCGCTGGCGCGGGGAACTCACTAAACTTAATGATGGCCGTTACAGCGTGGACGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP031546|4|4|4018587-4018981|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTTGCCCGATGGACACTCCCAGACCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACTAAACTTAATGATGGCCGTTACAGCGTGGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP031546|4|1|4018587-4018981|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTTGCCCGATGGACACTCCCAGACCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACTAAACTTAATGATGGCCGTTACAGCGTGGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP031546|4|1|4018588-4018981|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGGC
GGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTTC
GGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGAC
GGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTCC
GGTTTATCCCCGCTGGCGCGGGGAACTC	AGTTGCCCGATGGACACTCCCAGACCATCAGCC
GGTTTATCCCCGCTGGCGCGGGGAACTC	ACTAAACTTAATGATGGCCGTTACAGCGTGGAC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
CP031546.1\|AXO08578.1\|4025664_4025913_-\|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP031546.1\|AXO08569.1\|4015166_4016444_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP031546.1\|AXO08565.1\|4010350_4011130_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP031546.1\|AXO08563.1\|4008770_4009346_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP031546.1\|AXO08576.1\|4024467_4025259_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP031546.1\|AXO08568.1\|4014062_4014848_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP031546.1\|AXO08579.1\|4025990_4028225_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP031546.1\|AXO08580.1\|4028272_4029574_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP031546.1\|AXO08567.1\|4012538_4013993_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP031546.1\|AXO08566.1\|4011107_4012445_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP031546.1\|AXO08574.1\|4021216_4022515_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP031546.1\|AXO08572.1\|4020130_4020271_+\|hypothetical-protein	unknown	unknown	unknown
CP031546.1\|AXO08570.1\|4016470_4017949_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP031546.1\|AXO08561.1\|4007231_4008503_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP031546.1\|AXO08562.1\|4008493_4008754_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP031546.1\|AXO08571.1\|4019320_4019992_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP031546.1\|AXO08577.1\|4025329_4025665_-\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP031546.1\|AXO08573.1\|4020284_4021157_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
CP031546.1\|AXO08564.1\|4009493_4010354_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP031546.1\|AXO08575.1\|4022602_4024240_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
CP031546.1\|AXO08578.1\|4025664_4025913_-\|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP031546.1\|AXO08569.1\|4015166_4016444_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.84544e-29
CP031546.1\|AXO08565.1\|4010350_4011130_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62
CP031546.1\|AXO08563.1\|4008770_4009346_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP031546.1\|AXO08576.1\|4024467_4025259_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.91132e-160
CP031546.1\|AXO08568.1\|4014062_4014848_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14687e-138
CP031546.1\|AXO08579.1\|4025990_4028225_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP031546.1\|AXO08567.1\|4012538_4013993_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
CP031546.1\|AXO08566.1\|4011107_4012445_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
CP031546.1\|AXO08574.1\|4021216_4022515_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP031546.1\|AXO08580.1\|4028272_4029574_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP031546.1\|AXO08570.1\|4016470_4017949_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	9.76816e-108
CP031546.1\|AXO08561.1\|4007231_4008503_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
CP031546.1\|AXO08562.1\|4008493_4008754_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
CP031546.1\|AXO08571.1\|4019320_4019992_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
CP031546.1\|AXO08577.1\|4025329_4025665_-\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP031546.1\|AXO08573.1\|4020284_4021157_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.56011e-100
CP031546.1\|AXO08564.1\|4009493_4010354_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.38228e-89
CP031546.1\|AXO08575.1\|4022602_4024240_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>CP031546.1|AXO08570.1|4016470_4017949_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP031546.1|AXO08569.1|4015166_4016444_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>CP031546.1|AXO08568.1|4014062_4014848_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP031546.1|AXO08567.1|4012538_4013993_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP031546.1|AXO08566.1|4011107_4012445_-|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP031546.1|AXO08565.1|4010350_4011130_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>CP031546.1|AXO08564.1|4009493_4010354_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLIIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPKVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>CP031546.1|AXO08563.1|4008770_4009346_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP031546.1|AXO08562.1|4008493_4008754_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP031546.1|AXO08561.1|4007231_4008503_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>CP031546.1|AXO08571.1|4019320_4019992_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP031546.1|AXO08572.1|4020130_4020271_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>CP031546.1|AXO08573.1|4020284_4021157_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>CP031546.1|AXO08574.1|4021216_4022515_-|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP031546.1|AXO08575.1|4022602_4024240_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP031546.1|AXO08576.1|4024467_4025259_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLCGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP031546.1|AXO08577.1|4025329_4025665_-|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP031546.1|AXO08578.1|4025664_4025913_-|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP031546.1|AXO08579.1|4025990_4028225_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP031546.1|AXO08580.1|4028272_4029574_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Crispr_ID: CP031546_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031546_5

4543829-4543968

Orphan

Consensus_repeat	Method
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031546_5

>merge|CP031546|5|4543829-4543968|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAAACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

>CP031546|5|5|4543829-4543968|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	ACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGT
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP031546.1\|AXO09077.1\|4550494_4551502_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
CP031546.1\|AXO09059.1\|4533099_4533855_+\|galactosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182064
CP031546.1\|AXO09071.1\|4545895_4546414_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
CP031546.1\|AXO09076.1\|4548406_4549402_+\|collagenase	unknown	unknown	gnl\|CDD\|223896
CP031546.1\|AXO09061.1\|4534919_4535615_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
CP031546.1\|AXO09069.1\|4544019_4545060_-\|permease	unknown	unknown	gnl\|CDD\|223773
CP031546.1\|AXO09063.1\|4538171_4539263_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
CP031546.1\|AXO09073.1\|4546887_4547190_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
CP031546.1\|AXO09060.1\|4534255_4534840_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
CP031546.1\|AXO09846.1\|4549410_4550289_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
CP031546.1\|AXO09070.1\|4545132_4545768_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187560
CP031546.1\|AXO09074.1\|4547176_4547680_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
CP031546.1\|AXO09065.1\|4540230_4542267_+\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
CP031546.1\|AXO09068.1\|4543239_4543815_+\|osmotically-inducible-protein-OsmY	unknown	unknown	gnl\|CDD\|182907
CP031546.1\|AXO09064.1\|4539305_4540166_-\|rRNA-(cytidine-2'-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
CP031546.1\|AXO09075.1\|4547673_4548198_-\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
CP031546.1\|AXO09062.1\|4535644_4538161_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
CP031546.1\|AXO09072.1\|4546393_4546837_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
CP031546.1\|AXO09067.1\|4542639_4543230_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
CP031546.1\|AXO09066.1\|4542224_4542620_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|129354

Protein	Function_ID	Function_description	E-value
CP031546.1\|AXO09077.1\|4550494_4551502_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
CP031546.1\|AXO09059.1\|4533099_4533855_+\|galactosamine-6-phosphate-isomerase	gnl\|CDD\|182064	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional.	1.51027e-147
CP031546.1\|AXO09071.1\|4545895_4546414_+\|glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.06977e-86
CP031546.1\|AXO09076.1\|4548406_4549402_+\|collagenase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87234e-118
CP031546.1\|AXO09061.1\|4534919_4535615_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	3.14226e-78
CP031546.1\|AXO09069.1\|4544019_4545060_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	4.38189e-63
CP031546.1\|AXO09063.1\|4538171_4539263_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.34626e-21
CP031546.1\|AXO09073.1\|4546887_4547190_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	3.58629e-45
CP031546.1\|AXO09060.1\|4534255_4534840_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.76746e-31
CP031546.1\|AXO09846.1\|4549410_4550289_+\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
CP031546.1\|AXO09070.1\|4545132_4545768_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89133e-65
CP031546.1\|AXO09074.1\|4547176_4547680_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.31299e-64
CP031546.1\|AXO09065.1\|4540230_4542267_+\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	6.33924e-141
CP031546.1\|AXO09068.1\|4543239_4543815_+\|osmotically-inducible-protein-OsmY	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.97056e-117
CP031546.1\|AXO09064.1\|4539305_4540166_-\|rRNA-(cytidine-2'-O-)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
CP031546.1\|AXO09075.1\|4547673_4548198_-\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	6.78212e-85
CP031546.1\|AXO09062.1\|4535644_4538161_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP031546.1\|AXO09072.1\|4546393_4546837_-\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.19601e-100
CP031546.1\|AXO09067.1\|4542639_4543230_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	5.61903e-143
CP031546.1\|AXO09066.1\|4542224_4542620_+\|YraN-family-protein	gnl\|CDD\|129354	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved].	3.92681e-63

>CP031546.1|AXO09068.1|4543239_4543815_+|osmotically-inducible-protein-OsmY
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
>CP031546.1|AXO09067.1|4542639_4543230_+|DnaA-initiator-associating-protein-DiaA
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>CP031546.1|AXO09066.1|4542224_4542620_+|YraN-family-protein
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS
>CP031546.1|AXO09065.1|4540230_4542267_+|penicillin-binding-protein-activator
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>CP031546.1|AXO09064.1|4539305_4540166_-|rRNA-(cytidine-2'-O-)-methyltransferase
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>CP031546.1|AXO09063.1|4538171_4539263_+|fimbrial-protein
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQAGYYKLNDSLDIKTTLKANDIPGLVTDQTVSVNTRFTQIKSNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNAPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR
>CP031546.1|AXO09062.1|4535644_4538161_+|fimbrial-biogenesis-outer-membrane-usher-protein
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYSGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>CP031546.1|AXO09061.1|4534919_4535615_+|molecular-chaperone
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDNVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLSASGGKNVKWAAINDYGGSSGTETRPLQ
>CP031546.1|AXO09060.1|4534255_4534840_+|type-1-fimbrial-protein
MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRSVGDRSPKIPFTIPLVNCPVTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGTAATGVGIRIDDAESGNLMPLNAMGNDNTVYQIPADSAGIVNVDLIAYYVSTVEASEITPGEADAVVNVTLDYR
>CP031546.1|AXO09059.1|4533099_4533855_+|galactosamine-6-phosphate-isomerase
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLINT
>CP031546.1|AXO09069.1|4544019_4545060_-|permease
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGTVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>CP031546.1|AXO09070.1|4545132_4545768_-|NAD-dependent-epimerase/dehydratase-family-protein
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
>CP031546.1|AXO09071.1|4545895_4546414_+|glutamine-amidotransferase
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>CP031546.1|AXO09072.1|4546393_4546837_-|hypothetical-protein
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA
>CP031546.1|AXO09073.1|4546887_4547190_+|GIY-YIG-nuclease-family-protein
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>CP031546.1|AXO09074.1|4547176_4547680_-|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>CP031546.1|AXO09075.1|4547673_4548198_-|SCP2-domain-containing-protein
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKTAPETKQTSVGEPC
>CP031546.1|AXO09076.1|4548406_4549402_+|collagenase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>CP031546.1|AXO09846.1|4549410_4550289_+|U32-family-peptidase
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>CP031546.1|AXO09077.1|4550494_4551502_+|LLM-class-flavin-dependent-oxidoreductase
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPNVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031546_3	3.1\|1230903\|48\|CP031546\|CRISPRCasFinder	1230903-1230950	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4089-4136	3	0.938
CP031546_3	3.1\|1230903\|48\|CP031546\|CRISPRCasFinder	1230903-1230950	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4088-4135	3	0.938
CP031546_3	3.1\|1230903\|48\|CP031546\|CRISPRCasFinder	1230903-1230950	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4088-4135	3	0.938
CP031546_3	3.1\|1230903\|48\|CP031546\|CRISPRCasFinder	1230903-1230950	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4088-4135	3	0.938
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
CP031546_4	4.2\|4018677\|32\|CP031546\|CRISPRCasFinder,CRT	4018677-4018708	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
CP031546_5	5.1\|4543878\|42\|CP031546\|CRISPRCasFinder	4543878-4543919	42	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30214-30255	7	0.833
CP031546_4	4.3\|4018738\|32\|CP031546\|CRISPRCasFinder,CRT	4018738-4018769	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51275-51307	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45715-45747	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51275-51307	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45715-45747	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51275-51307	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51275-51307	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51275-51307	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29014-29046	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78291-78323	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18559-18591	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49239-49271	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81433-81465	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28915-28947	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36181-36213	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32229-32261	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39595	8	0.758
CP031546_4	4.8\|4018677\|33\|CP031546\|PILER-CR	4018677-4018709	33	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51934	8	0.758
CP031546_5	5.1\|4543878\|42\|CP031546\|CRISPRCasFinder	4543878-4543919	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24899-24940	8	0.81
CP031546_5	5.1\|4543878\|42\|CP031546\|CRISPRCasFinder	4543878-4543919	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24786-24827	9	0.786
CP031546_4	4.6\|4018921\|32\|CP031546\|CRISPRCasFinder,CRT	4018921-4018952	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688

1. spacer 3.1|1230903|48|CP031546|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

2. spacer 3.1|1230903|48|CP031546|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

3. spacer 3.1|1230903|48|CP031546|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

4. spacer 3.1|1230903|48|CP031546|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

5. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

6. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

7. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

8. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

9. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

10. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

11. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

12. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

13. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

14. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

15. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

16. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

17. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

18. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

19. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

20. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

21. spacer 4.2|4018677|32|CP031546|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

22. spacer 5.1|4543878|42|CP031546|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
gcgtaggccagataaggcgtttacgccgcatccggcatttgt	Protospacer
.******.*********.****************.*  .***

23. spacer 4.3|4018738|32|CP031546|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** *******

24. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

25. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

26. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

27. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

28. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

29. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

30. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

31. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

32. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

33. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

34. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

35. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

36. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

37. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

38. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

39. spacer 4.8|4018677|33|CP031546|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

40. spacer 4.8|4018677|33|CP031546|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

41. spacer 5.1|4543878|42|CP031546|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaat	Protospacer
 .*******.*******.******************  * .*

42. spacer 5.1|4543878|42|CP031546|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaac	Protospacer
 .*******.*******.******************  * ..

43. spacer 4.6|4018921|32|CP031546|CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

actaaacttaatgatggccgttacagcgtgga	CRISPR spacer
gagtaacttaatgatgggcgtcacagcagcgg	Protospacer
.   ************* ***.*****.  *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

594931 : 639309

Enterobacteria_phage(89.74%)

integrase,protease,tail,plate,holin,portal,capsid

attL 590693:590709|attR 644318:644334

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
590693:590709	attL	NA	NA	NA	NA
AXO05406.1\|594931_595174_+	DUF4177 domain-containing protein	A0A0A7NPW2	Enterobacteria_phage	2.5e-40	100.0
AXO05407.1\|595166_595400_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
AXO05408.1\|595529_595670_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
AXO05409.1\|595861_596122_-	hypothetical protein	NA	NA	NA	NA
AXO05410.1\|596164_597265_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.2e-206	100.0
AXO05411.1\|597422_598607_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.6e-226	99.5
AXO05412.1\|598606_599119_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
AXO05413.1\|599173_599539_+\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	3.8e-56	97.5
AXO05414.1\|599466_599703_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.9e-22	98.0
AXO05415.1\|599689_602497_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	98.2
AXO05416.1\|602503_602998_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.8e-85	98.2
AXO05417.1\|603066_603600_-\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-62	67.2
AXO05418.1\|603602_606194_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	1.0e-163	52.9
AXO05419.1\|606196_606727_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	1.1e-93	99.4
AXO05420.1\|606719_607616_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	5.5e-157	99.3
AXO05421.1\|608547_609183_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
AXO05422.1\|609175_609643_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.3e-85	99.4
AXO09693.1\|609629_609809_-	hypothetical protein	NA	NA	NA	NA
AXO05423.1\|609780_610188_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	3.8e-65	97.0
AXO05424.1\|610184_610577_-	M15 family peptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
AXO05425.1\|610573_610897_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	6.1e-50	98.1
AXO05426.1\|610899_611100_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	6.0e-32	98.5
AXO05427.1\|611099_611594_-\|capsid	capsid assembly protein	A0A0A7NPU2	Enterobacteria_phage	6.6e-88	98.8
AXO05428.1\|612543_613596_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	6.8e-199	100.0
AXO05429.1\|613618_614455_-\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	100.0
AXO05430.1\|614609_616361_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.3
AXO05431.1\|616360_617407_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
AXO05432.1\|617897_618422_-	ead/Ea22-like family protein	NA	NA	NA	NA
AXO05433.1\|618485_618797_-	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	3.2e-48	93.2
AXO05434.1\|618801_619761_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	9.9e-181	99.7
AXO05435.1\|622667_623033_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.1e-60	95.9
AXO05436.1\|623029_623647_-	hypothetical protein	K7PLX4	Enterobacteria_phage	1.9e-12	50.6
AXO09694.1\|623656_624193_-	DNA-binding protein	NA	NA	NA	NA
AXO05437.1\|624519_624765_-	MarR family transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.3e-40	98.8
AXO05438.1\|624761_624965_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	4.0e-31	100.0
AXO05439.1\|625161_625404_-	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	1.5e-37	98.8
AXO05440.1\|625415_625694_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	5.3e-34	79.3
AXO05441.1\|625704_626055_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	7.8e-59	98.3
AXO05442.1\|626092_626518_-	hypothetical protein	A0A0A7NPS5	Enterobacteria_phage	9.1e-78	100.0
AXO05443.1\|626626_626926_+	XRE family transcriptional regulator	A0A0A7NPW3	Enterobacteria_phage	2.1e-44	98.9
AXO09695.1\|626992_627988_+\|integrase	integrase	A0A0A7NQ69	Enterobacteria_phage	1.2e-192	99.4
AXO05444.1\|628279_628531_+	antitoxin ChpS	NA	NA	NA	NA
AXO05445.1\|628524_628875_+	type II toxin-antitoxin system ChpB family toxin	NA	NA	NA	NA
AXO05446.1\|628954_629485_-	inorganic pyrophosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	9.4e-56	63.9
AXO05447.1\|629794_630751_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXO05448.1\|630829_631039_+	hypothetical protein	NA	NA	NA	NA
AXO05449.1\|631060_632563_+	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.1e-11	30.3
AXO05450.1\|632573_633599_+	ABC transporter permease	NA	NA	NA	NA
AXO05451.1\|633585_634581_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA
AXO05452.1\|634613_635612_-	fructose 1,6-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.7e-70	42.7
AXO05453.1\|635787_637161_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
AXO05454.1\|637311_637863_-	ribosome-associated protein	NA	NA	NA	NA
AXO05455.1\|637956_639309_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
644318:644334	attR	NA	NA	NA	NA

DBSCAN-SWA_2

660786 : 710421

Escherichia_phage(18.75%)

holin,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO05478.1\|660786_663642_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.8e-140	36.7
AXO05479.1\|663641_664085_-	DNA polymerase III subunit chi	NA	NA	NA	NA
AXO05480.1\|664438_665950_-	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
AXO05481.1\|666216_667317_+	lipopolysaccharide ABC transporter permease LptF	NA	NA	NA	NA
AXO05482.1\|667316_668399_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
AXO05483.1\|668559_670062_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	4.6e-84	44.2
AXO05484.1\|670139_671138_-	transcriptional regulator	NA	NA	NA	NA
AXO05485.1\|671204_672524_-	gluconate permease	NA	NA	NA	NA
AXO05486.1\|672586_673351_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
AXO05487.1\|673374_674406_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
AXO05488.1\|674622_675186_+	thermosensitive gluconokinase	NA	NA	NA	NA
AXO05489.1\|675189_676209_-	aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.7
AXO05490.1\|676526_676721_+	hypothetical protein	NA	NA	NA	NA
AXO09697.1\|676749_677940_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	9.4e-72	40.1
AXO05491.1\|679451_679682_-	hypothetical protein	NA	NA	NA	NA
AXO05492.1\|679697_679892_+	hypothetical protein	NA	NA	NA	NA
AXO05493.1\|680595_680739_+	hypothetical protein	NA	NA	NA	NA
AXO05494.1\|680766_682095_-\|transposase	IS4 family transposase IS4	NA	NA	NA	NA
AXO05495.1\|682721_683939_+	MFS transporter	NA	NA	NA	NA
AXO09698.1\|683950_685069_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
AXO05496.1\|685111_685237_+	hypothetical protein	NA	NA	NA	NA
AXO05497.1\|685289_685547_-	hypothetical protein	NA	NA	NA	NA
AXO05498.1\|685860_687027_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	99.3
AXO05499.1\|686962_687376_-	DUF2254 domain-containing protein	NA	NA	NA	NA
AXO05500.1\|687335_687494_-\|holin	choline transporter	NA	NA	NA	NA
AXO05501.1\|687438_689442_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.5e-21	25.9
AXO05502.1\|689589_690746_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.6e-68	45.1
AXO05503.1\|691523_691937_+	hypothetical protein	NA	NA	NA	NA
AXO05504.1\|692493_693261_-	Fe(3+) dicitrate transport ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
AXO05505.1\|693261_694218_-	iron-dicitrate ABC transporter permease FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
AXO05506.1\|694214_695213_-	Fe3+ dicitrate ABC transporter permease	NA	NA	NA	NA
AXO05507.1\|695209_696112_-	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
AXO05508.1\|696156_698481_-	fe(3+) dicitrate transporter fecA	NA	NA	NA	NA
AXO05509.1\|698567_699521_-	protein FecR	NA	NA	NA	NA
AXO05510.1\|699517_700039_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
AXO05511.1\|701555_701744_-	hypothetical protein	NA	NA	NA	NA
AXO05512.1\|701788_702046_+	biofilm development YmgB/AriR family protein	NA	NA	NA	NA
AXO05513.1\|702208_702418_-	hypothetical protein	A0A0N7BTS3	Escherichia_phage	5.9e-06	96.0
AXO05514.1\|702781_704155_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
AXO05515.1\|704393_705779_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3
AXO05516.1\|705828_706176_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
AXO09699.1\|706172_706553_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
AXO05517.1\|706671_706908_-	hypothetical protein	NA	NA	NA	NA
AXO05518.1\|706907_707429_-	hypothetical protein	NA	NA	NA	NA
AXO05519.1\|707329_707737_-	hypothetical protein	NA	NA	NA	NA
AXO05520.1\|707990_708581_-	inovirus Gp2 family protein	NA	NA	NA	NA
AXO05521.1\|708619_709402_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.0e-139	100.0
AXO05522.1\|709398_710421_-\|transposase	IS21 family transposase IS100	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0

DBSCAN-SWA_3

1204149 : 1249171

Streptococcus_phage(22.22%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO05957.1\|1204149_1205481_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AXO05958.1\|1205483_1206008_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AXO05959.1\|1206004_1207285_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AXO05960.1\|1207309_1208392_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXO05961.1\|1208355_1210206_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXO05962.1\|1210209_1210623_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AXO05963.1\|1210629_1212105_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AXO05964.1\|1212155_1212380_-	hypothetical protein	NA	NA	NA	NA
AXO05965.1\|1212414_1212915_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AXO05966.1\|1213612_1214131_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
AXO05967.1\|1214163_1214301_+	hypothetical protein	NA	NA	NA	NA
AXO05968.1\|1214340_1216482_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.1e-25	25.0
AXO05969.1\|1216557_1220811_+	RHS repeat family protein	A0A2H4JHK7	uncultured_Caudovirales_phage	3.2e-21	44.2
AXO05970.1\|1220822_1221272_+	hypothetical protein	NA	NA	NA	NA
AXO05971.1\|1222710_1223481_-	amidohydrolase	NA	NA	NA	NA
AXO05972.1\|1223634_1224108_+	inhibitor of vertebrate lysozyme	NA	NA	NA	NA
AXO05973.1\|1224150_1226595_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
AXO05974.1\|1226834_1227413_+	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
AXO05975.1\|1227618_1228386_+	class II glutamine amidotransferase	NA	NA	NA	NA
AXO05976.1\|1228356_1229097_-	transpeptidase	NA	NA	NA	NA
AXO05977.1\|1229388_1230147_+	peptidoglycan endopeptidase	A0A1V0DZX6	Clostridioides_phage	2.6e-19	37.7
AXO05978.1\|1230322_1230820_+\|transposase	transposase	NA	NA	NA	NA
AXO05979.1\|1231137_1232877_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
AXO09719.1\|1232818_1233607_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
AXO05980.1\|1233677_1234733_+	DNA polymerase IV	NA	NA	NA	NA
AXO05981.1\|1234729_1235182_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXO05982.1\|1235274_1235463_-	hypothetical protein	NA	NA	NA	NA
AXO05983.1\|1235488_1235755_+	hypothetical protein	NA	NA	NA	NA
AXO05984.1\|1236111_1237569_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
AXO05985.1\|1237829_1238288_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
AXO05986.1\|1238379_1239624_+	esterase	NA	NA	NA	NA
AXO05987.1\|1239681_1240083_+	sigma factor-binding protein Crl	NA	NA	NA	NA
AXO05988.1\|1240121_1241177_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.2e-115	60.1
AXO05989.1\|1241464_1242568_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AXO05990.1\|1242579_1243833_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
AXO05991.1\|1245332_1245872_-	recombinase family protein	Q2A092	Sodalis_phage	1.1e-27	43.8
AXO05992.1\|1247724_1247913_+	hypothetical protein	NA	NA	NA	NA
AXO09720.1\|1248196_1249171_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1

DBSCAN-SWA_4

2339088 : 2394306

Escherichia_phage(82.26%)

tail,plate,holin,lysis,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO09760.1\|2339088_2340321_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
AXO07002.1\|2340575_2341559_+	zinc transporter ZntB	NA	NA	NA	NA
AXO07003.1\|2341833_2342007_+	hypothetical protein	NA	NA	NA	NA
AXO07004.1\|2342036_2343410_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
AXO07005.1\|2343538_2344474_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.8e-148	100.0
AXO07006.1\|2344525_2345761_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.1e-240	99.5
AXO07007.1\|2345762_2345978_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
AXO07008.1\|2346077_2346266_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.9e-27	100.0
AXO07009.1\|2346258_2346453_-	restriction alleviation protein, Lar family	A0A0U2QQP4	Escherichia_phage	9.0e-33	100.0
AXO07010.1\|2346516_2347569_-	enterohemolysin	A0A0U2S5Y9	Escherichia_phage	8.5e-117	63.6
AXO07011.1\|2347580_2350703_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	93.9
AXO07012.1\|2350804_2351080_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	5.0e-45	100.0
AXO07013.1\|2351154_2351355_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	3.7e-21	86.8
AXO07014.1\|2351284_2351521_-	DUF1482 family protein	NA	NA	NA	NA
AXO07015.1\|2351441_2351651_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
AXO07016.1\|2351669_2351942_-	hypothetical protein	NA	NA	NA	NA
AXO07017.1\|2352364_2352517_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.5e-08	55.3
AXO07018.1\|2352528_2352663_-	hypothetical protein	NA	NA	NA	NA
AXO07019.1\|2352898_2353363_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.2e-54	70.2
AXO07020.1\|2353467_2353743_+	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	1.4e-23	65.9
AXO07021.1\|2353726_2354149_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	3.4e-69	94.3
AXO07022.1\|2354226_2355357_+	hypothetical protein	G9L6A8	Escherichia_phage	8.7e-43	65.7
AXO07023.1\|2355363_2356110_+	DNA replication protein DnaC	V5UQI5	Shigella_phage	4.3e-115	81.3
AXO07024.1\|2356130_2356874_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	9.9e-104	83.0
AXO07025.1\|2356860_2357361_+	hypothetical protein	G9L663	Escherichia_phage	1.2e-36	65.9
AXO07026.1\|2357804_2358164_+	hypothetical protein	A0A076GCN9	Escherichia_phage	4.3e-36	73.8
AXO07027.1\|2358164_2358380_+	hypothetical protein	A0A222YWK2	Escherichia_phage	2.2e-35	94.4
AXO07028.1\|2358381_2358600_+	DUF4014 domain-containing protein	A0A1I9LJM2	Stx_converting_phage	1.4e-29	90.3
AXO07029.1\|2358601_2359147_+	hypothetical protein	A0A2I6PID2	Escherichia_phage	9.7e-24	56.6
AXO07030.1\|2359381_2359594_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	8.1e-27	92.9
AXO07031.1\|2359568_2359784_-	hypothetical protein	NA	NA	NA	NA
AXO07032.1\|2360107_2360707_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	3.5e-107	92.5
AXO07033.1\|2360706_2360997_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	4.3e-47	89.6
AXO07034.1\|2360993_2361536_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.6e-74	74.6
AXO07035.1\|2361923_2362649_+	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	7.5e-80	66.0
AXO09761.1\|2362716_2363142_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
AXO07036.1\|2363199_2363592_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	5.7e-50	89.2
AXO09762.1\|2363581_2363857_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	9.8e-41	94.5
AXO07037.1\|2363859_2364237_+	M15 family peptidase	Q9MBZ3	Enterobacteria_phage	5.1e-64	97.6
AXO07038.1\|2364448_2365018_+	hypothetical protein	A0A0N7KZV8	Escherichia_phage	1.9e-99	94.7
AXO09763.1\|2365169_2365637_+\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	4.8e-64	84.4
AXO07039.1\|2366134_2366344_+	hypothetical protein	NA	NA	NA	NA
AXO07040.1\|2366347_2367439_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	5.3e-146	90.8
AXO07041.1\|2367428_2368757_+\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	3.4e-264	99.8
AXO07042.1\|2368775_2370212_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	8.8e-274	99.4
AXO09764.1\|2370270_2370990_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	3.6e-135	98.3
AXO07043.1\|2370970_2372293_+	DUF2213 domain-containing protein	A0A0U2QW61	Escherichia_phage	4.7e-189	95.7
AXO07044.1\|2372285_2372903_+	hypothetical protein	A0A0U2S600	Escherichia_phage	9.4e-116	98.0
AXO07045.1\|2372917_2373946_+	hypothetical protein	A0A0U2QQI2	Escherichia_phage	1.9e-190	99.7
AXO07046.1\|2374003_2374474_+	hypothetical protein	A0A0U2SAX6	Escherichia_phage	2.7e-83	98.1
AXO07047.1\|2374473_2374914_+	hypothetical protein	A0A0U2S646	Escherichia_phage	1.2e-77	99.3
AXO07048.1\|2374910_2375351_+	hypothetical protein	A0A0U2RTA8	Escherichia_phage	2.8e-82	97.9
AXO07049.1\|2375337_2376282_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	1.4e-171	98.7
AXO07050.1\|2376281_2377619_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	3.6e-245	96.4
AXO07051.1\|2377642_2378074_+	hypothetical protein	A0A0U2S616	Escherichia_phage	3.3e-75	100.0
AXO07052.1\|2378070_2378688_+	hypothetical protein	A0A0U2S634	Escherichia_phage	4.5e-94	87.8
AXO07053.1\|2378752_2380813_+	lytic transglycosylase domain-containing protein	A0A0U2QV45	Escherichia_phage	1.9e-128	42.8
AXO07054.1\|2380816_2381485_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	4.7e-121	98.2
AXO07055.1\|2381481_2381748_+	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	1.7e-45	98.9
AXO07056.1\|2381747_2382755_+	hypothetical protein	A0A0U2QL72	Escherichia_phage	3.6e-181	91.3
AXO07057.1\|2382754_2383468_+\|plate	phage baseplate protein	A0A0U2JTX5	Escherichia_phage	3.0e-126	97.0
AXO07058.1\|2383718_2384066_+	hypothetical protein	A0A0U2I1S2	Escherichia_phage	1.5e-62	100.0
AXO07059.1\|2384041_2384602_-	phage antirepressor Ant	A0A0U2QL80	Escherichia_phage	1.0e-84	84.9
AXO07060.1\|2384585_2384927_+	hypothetical protein	NA	NA	NA	NA
AXO07061.1\|2384938_2385685_+	hypothetical protein	NA	NA	NA	NA
AXO07062.1\|2385727_2386954_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	4.4e-226	98.8
AXO07063.1\|2386937_2387564_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	5.8e-121	99.5
AXO07064.1\|2387560_2388916_+\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	2.2e-218	84.7
AXO07065.1\|2388918_2389464_+\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	2.9e-76	75.8
AXO07066.1\|2389487_2391491_+\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	5.5e-242	59.7
AXO07067.1\|2391490_2392054_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	7.8e-101	96.8
AXO07068.1\|2392597_2393032_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
AXO07069.1\|2393172_2394306_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8

DBSCAN-SWA_5

2601349 : 2654786

Enterobacteria_phage(36.17%)

tail,transposase,portal,capsid,lysis,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO07244.1\|2601349_2601925_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
AXO07245.1\|2601924_2604885_-	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	4.2e-52	53.5
AXO07246.1\|2604949_2605549_-	Ail/Lom family protein	H6WZM8	Escherichia_phage	2.3e-103	92.5
AXO07247.1\|2609155_2609797_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.9e-96	86.5
AXO07248.1\|2609694_2610438_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.4e-144	94.3
AXO07249.1\|2610443_2611142_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
AXO07250.1\|2611141_2611471_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.8e-57	96.3
AXO07251.1\|2611467_2614029_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	95.1
AXO07252.1\|2614021_2614456_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AXO07253.1\|2614437_2614860_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
AXO09771.1\|2614875_2615616_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
AXO07254.1\|2615623_2616019_-\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
AXO07255.1\|2616015_2616594_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
AXO07256.1\|2616605_2616959_-\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
AXO07257.1\|2616970_2617366_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.1e-58	95.5
AXO07258.1\|2617407_2618433_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	2.8e-189	98.2
AXO07259.1\|2618488_2618821_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.5e-54	98.2
AXO07260.1\|2618830_2620150_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.0e-233	98.4
AXO07261.1\|2620130_2621732_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.3e-310	99.4
AXO07262.1\|2621728_2621935_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AXO07263.1\|2621931_2623857_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
AXO07264.1\|2623831_2624377_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.8e-94	98.9
AXO07265.1\|2624516_2624618_-	hypothetical protein	NA	NA	NA	NA
AXO07266.1\|2624765_2624999_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
AXO07267.1\|2625617_2625791_-	protein GnsB	NA	NA	NA	NA
AXO07268.1\|2625962_2626235_-	hypothetical protein	NA	NA	NA	NA
AXO07269.1\|2626265_2626454_-	cold-shock protein	NA	NA	NA	NA
AXO07270.1\|2626464_2626677_-	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AXO07271.1\|2627039_2627537_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
AXO07272.1\|2627533_2628067_-	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AXO07273.1\|2628063_2628375_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AXO07274.1\|2628379_2628595_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AXO07275.1\|2629348_2629564_-	cold-shock protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
AXO07276.1\|2629864_2630077_+	cold-shock protein CspF	NA	NA	NA	NA
AXO07277.1\|2630498_2631251_-	antitermination protein Q	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
AXO07278.1\|2631264_2632314_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
AXO07279.1\|2632315_2632594_-	hypothetical protein	NA	NA	NA	NA
AXO07280.1\|2632660_2632912_-	hypothetical protein	NA	NA	NA	NA
AXO07281.1\|2633128_2633284_-	protein HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
AXO07282.1\|2633355_2633643_-	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
AXO07283.1\|2633642_2633882_-	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AXO07284.1\|2633906_2634212_+	hypothetical protein	NA	NA	NA	NA
AXO07285.1\|2634414_2634747_+	protein FlxA	NA	NA	NA	NA
AXO07286.1\|2635016_2635139_-	plasmid mobilization protein	NA	NA	NA	NA
AXO07287.1\|2635183_2636497_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXO07288.1\|2636674_2636857_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	6.3e-12	74.5
AXO07289.1\|2636831_2637011_-	hypothetical protein	NA	NA	NA	NA
AXO07290.1\|2638163_2638520_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
AXO07291.1\|2638516_2638939_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.0
AXO07292.1\|2638979_2639999_-	hypothetical protein	U5P0A0	Shigella_phage	2.4e-55	60.2
AXO07293.1\|2639925_2640447_-	hypothetical protein	NA	NA	NA	NA
AXO07294.1\|2640430_2640661_-	division inhibition gene dicB repressor	NA	NA	NA	NA
AXO07295.1\|2640744_2641152_+	transcriptional regulator	K7PM82	Enterobacteria_phage	4.4e-13	54.7
AXO07296.1\|2641318_2641474_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.0e-07	53.2
AXO07297.1\|2641433_2641604_+	hypothetical protein	NA	NA	NA	NA
AXO07298.1\|2641633_2641852_+	hypothetical protein	NA	NA	NA	NA
AXO07299.1\|2642419_2642608_+	division inhibition protein DicB	NA	NA	NA	NA
AXO07300.1\|2642604_2642796_+	DUF1482 family protein	NA	NA	NA	NA
AXO07301.1\|2642888_2645360_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
AXO07302.1\|2645432_2645684_+	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AXO07303.1\|2645703_2646999_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	3.3e-155	62.1
AXO07304.1\|2647018_2647129_-	transporter	NA	NA	NA	NA
AXO07305.1\|2647186_2648206_-	starvation-sensing protein RspB	E3SJ82	Synechococcus_phage	9.7e-17	25.9
AXO07306.1\|2648217_2649432_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AXO07307.1\|2649412_2649601_-	hypothetical protein	NA	NA	NA	NA
AXO07308.1\|2649637_2649964_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AXO07309.1\|2650098_2650440_+	DUF1283 family protein	NA	NA	NA	NA
AXO07310.1\|2650474_2651035_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
AXO07311.1\|2651037_2651748_-	YnfC family lipoprotein	NA	NA	NA	NA
AXO07312.1\|2651855_2652161_+	DUF1161 domain-containing protein	NA	NA	NA	NA
AXO07313.1\|2652359_2654786_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0

DBSCAN-SWA_6

3231922 : 3241363

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO07852.1\|3231922_3233059_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
AXO07853.1\|3233055_3235056_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
AXO07854.1\|3235180_3235642_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AXO07855.1\|3235681_3236152_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
AXO07856.1\|3236198_3236918_-	DNA-binding response regulator	NA	NA	NA	NA
AXO07857.1\|3236914_3238600_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AXO07858.1\|3238821_3239553_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AXO07859.1\|3239612_3239720_+	protein YohO	NA	NA	NA	NA
AXO07860.1\|3239700_3240432_-	ABC transporter permease	NA	NA	NA	NA
AXO07861.1\|3240436_3241363_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	30.8

DBSCAN-SWA_7

3719519 : 3808274

104

Enterobacteria_phage(53.7%)

integrase,tail,plate,holin,portal,tRNA,capsid,head,terminase

attL 3763320:3763349|attR 3806864:3806893

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO08292.1\|3719519_3720257_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
AXO08293.1\|3720388_3721723_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
AXO08294.1\|3721931_3722813_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXO08295.1\|3722915_3723503_+	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
AXO08296.1\|3723558_3723942_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
AXO08297.1\|3724246_3724936_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
AXO08298.1\|3724983_3726021_-	methyltransferase	NA	NA	NA	NA
AXO08299.1\|3726010_3726214_-	hypothetical protein	NA	NA	NA	NA
AXO08300.1\|3726227_3726647_+	thiol disulfide reductase thioredoxin	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
AXO09813.1\|3726715_3727414_+	DTW domain-containing protein	NA	NA	NA	NA
AXO08301.1\|3727445_3730106_+	protein lysine acetyltransferase	NA	NA	NA	NA
AXO08302.1\|3730219_3731575_+	phosphatidylserine synthase	NA	NA	NA	NA
AXO08303.1\|3731620_3731944_+	YfiM family lipoprotein	NA	NA	NA	NA
AXO08304.1\|3731940_3733239_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
AXO08305.1\|3733220_3733334_-	alpha-ketoglutarate permease	NA	NA	NA	NA
AXO08306.1\|3739102_3741676_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	7.6e-127	35.5
AXO08307.1\|3741805_3742537_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AXO08308.1\|3742533_3743514_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AXO08309.1\|3743648_3744386_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AXO08310.1\|3744415_3744622_+	hypothetical protein	NA	NA	NA	NA
AXO08311.1\|3744656_3744998_+	ribosome-associated inhibitor A	NA	NA	NA	NA
AXO09814.1\|3745101_3745149_+	hypothetical protein	NA	NA	NA	NA
AXO08312.1\|3745247_3746408_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AXO08313.1\|3746450_3747572_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AXO08314.1\|3747582_3748653_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
AXO08315.1\|3748862_3749228_+	DUF2799 domain-containing protein	NA	NA	NA	NA
AXO08316.1\|3749377_3749896_+	DUF4154 domain-containing protein	NA	NA	NA	NA
AXO08317.1\|3749885_3751112_+	diguanylate cyclase	NA	NA	NA	NA
AXO08318.1\|3751127_3751610_+	OmpA family protein	NA	NA	NA	NA
AXO08319.1\|3751685_3752033_-	50S ribosomal protein L19	NA	NA	NA	NA
AXO08320.1\|3752074_3752842_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXO08321.1\|3752872_3753421_-	ribosome maturation factor RimM	NA	NA	NA	NA
AXO08322.1\|3753439_3753688_-	30S ribosomal protein S16	NA	NA	NA	NA
AXO08323.1\|3753824_3755186_-	signal recognition particle protein	NA	NA	NA	NA
AXO09815.1\|3755352_3756144_+	inner membrane protein YpjD	NA	NA	NA	NA
AXO09816.1\|3756209_3757451_+	DUF21 domain-containing protein	NA	NA	NA	NA
AXO08324.1\|3757505_3758099_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXO08325.1\|3758095_3758290_-	molecular chaperone GrpE	NA	NA	NA	NA
AXO08326.1\|3758221_3759100_+	NAD(+) kinase	NA	NA	NA	NA
AXO08327.1\|3759185_3760847_+	DNA repair protein RecN	NA	NA	NA	NA
AXO08328.1\|3760995_3761337_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXO08329.1\|3761398_3761689_-	RnfH family protein	NA	NA	NA	NA
AXO08330.1\|3761678_3762155_-	ubiquinone-binding protein	NA	NA	NA	NA
AXO08331.1\|3762286_3762769_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
3763320:3763349	attL	NA	NA	NA	NA
AXO08332.1\|3763544_3764108_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	3.3e-99	96.2
AXO08333.1\|3764107_3766111_-\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	1.6e-228	58.0
AXO08334.1\|3766136_3767225_-	late control protein	R9TNM7	Vibrio_phage	1.3e-32	29.7
AXO08335.1\|3767215_3767434_-\|tail	phage tail protein	A0A077K8R0	Ralstonia_phage	3.2e-10	49.3
AXO08336.1\|3767408_3767897_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.1e-13	34.1
AXO08337.1\|3767899_3769552_-	hypothetical protein	R9TRP8	Vibrio_phage	5.4e-41	31.4
AXO08338.1\|3769669_3769972_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AXO08339.1\|3770030_3770549_-\|tail	phage tail protein	NA	NA	NA	NA
AXO08340.1\|3770545_3772021_-\|tail	phage tail protein	R9TMQ0	Vibrio_phage	5.1e-75	38.5
AXO08341.1\|3772075_3772618_-\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	8.1e-71	70.9
AXO08342.1\|3772620_3773850_-\|tail	phage tail protein	Q8W613	Enterobacteria_phage	4.5e-109	82.1
AXO08343.1\|3773846_3774437_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	4.7e-24	38.5
AXO08344.1\|3774429_3775344_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	2.2e-60	43.2
AXO08345.1\|3775318_3775675_-\|plate	baseplate assembly protein	V5YTB2	Pseudomonas_phage	2.8e-19	46.8
AXO08346.1\|3775708_3776332_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	1.4e-10	29.8
AXO09817.1\|3776315_3776867_-	hypothetical protein	NA	NA	NA	NA
AXO08347.1\|3776878_3777601_-	hypothetical protein	NA	NA	NA	NA
AXO08348.1\|3777986_3778352_-	DNA breaking-rejoining protein	NA	NA	NA	NA
AXO08349.1\|3778402_3779431_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	5.8e-110	58.9
AXO08350.1\|3779500_3779836_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.1e-20	52.3
AXO09818.1\|3781481_3783005_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	1.2e-183	63.6
AXO08351.1\|3783049_3783259_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.4e-10	49.2
AXO08352.1\|3783262_3785179_-\|terminase	phage terminase large subunit family protein	O64317	Escherichia_phage	1.9e-252	64.6
AXO08353.1\|3785150_3785699_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.1e-59	87.1
AXO08354.1\|3786029_3786227_+	hypothetical protein	NA	NA	NA	NA
AXO08355.1\|3786325_3786622_-	hypothetical protein	Q8W634	Enterobacteria_phage	5.6e-50	98.0
AXO08356.1\|3787227_3787509_-	hypothetical protein	NA	NA	NA	NA
AXO08357.1\|3787579_3787957_-	M15 family peptidase	Q9MBZ3	Enterobacteria_phage	3.9e-64	96.8
AXO08358.1\|3787959_3788235_-\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	8.6e-45	98.9
AXO08359.1\|3788224_3788617_-\|holin	holin	Q9MBZ5	Enterobacteria_phage	3.7e-49	90.0
AXO08360.1\|3788787_3788985_+	hypothetical protein	Q9MBZ6	Enterobacteria_phage	2.5e-30	100.0
AXO08361.1\|3789035_3789299_-	Shiga toxin Stx2e subunit B	Q9MBZ7	Enterobacteria_phage	2.9e-42	100.0
AXO08362.1\|3789311_3790271_-	Shiga toxin Stx2 subunit A	Q9MBZ8	Enterobacteria_phage	7.6e-173	99.4
AXO08363.1\|3790655_3791714_-	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	6.8e-207	98.9
AXO08364.1\|3791864_3792062_-	TrmB family transcriptional regulator	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
AXO08365.1\|3792322_3793375_+	hypothetical protein	NA	NA	NA	NA
AXO08366.1\|3793375_3793768_+	hypothetical protein	NA	NA	NA	NA
AXO08367.1\|3793764_3794430_+	hypothetical protein	NA	NA	NA	NA
AXO08368.1\|3794460_3794808_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.9e-57	90.9
AXO09819.1\|3794807_3795050_-	hypothetical protein	Q8W639	Enterobacteria_phage	9.2e-35	98.8
AXO08369.1\|3795061_3796453_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	1.3e-261	97.8
AXO08370.1\|3796449_3797340_-	AAA family ATPase	Q8W641	Enterobacteria_phage	9.5e-85	64.5
AXO08371.1\|3797359_3798337_-	replication protein	Q8W642	Enterobacteria_phage	1.3e-42	97.6
AXO08372.1\|3798333_3798633_-	transcriptional regulator	NA	NA	NA	NA
AXO08373.1\|3798629_3798854_-	hypothetical protein	NA	NA	NA	NA
AXO08374.1\|3798850_3799513_-	hypothetical protein	Q8W643	Enterobacteria_phage	2.6e-103	88.8
AXO09820.1\|3799625_3800333_-	DNA-binding protein	Q8W645	Enterobacteria_phage	6.1e-127	98.3
AXO08375.1\|3800452_3800704_+	bssS family protein	NA	NA	NA	NA
AXO08376.1\|3800788_3800998_-	hypothetical protein	Q8W647	Enterobacteria_phage	3.1e-31	94.0
AXO08377.1\|3801109_3801766_+	helix-turn-helix domain-containing protein	Q8W648	Enterobacteria_phage	2.8e-126	99.5
AXO08378.1\|3801869_3802400_+	helix-turn-helix domain-containing protein	Q8W649	Enterobacteria_phage	2.2e-65	97.0
AXO08379.1\|3802596_3802785_+	hypothetical protein	Q8W652	Enterobacteria_phage	4.5e-29	100.0
AXO08380.1\|3802781_3803363_+	hypothetical protein	Q8W653	Enterobacteria_phage	1.5e-99	87.6
AXO08381.1\|3803539_3803728_+	hypothetical protein	NA	NA	NA	NA
AXO08382.1\|3803724_3804552_+	SPFH/Band 7/PHB domain protein	Q8W654	Enterobacteria_phage	4.0e-130	98.9
AXO08383.1\|3804993_3805236_+	DUF4222 domain-containing protein	Q8W656	Enterobacteria_phage	6.8e-38	100.0
AXO08384.1\|3805239_3805386_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	5.4e-22	93.8
AXO08385.1\|3805394_3805604_+	excisionase	I6PBM8	Cronobacter_phage	1.6e-30	86.8
AXO08386.1\|3805558_3806731_+\|integrase	site-specific integrase	I6PDJ1	Cronobacter_phage	2.2e-198	87.9
AXO08387.1\|3807074_3808274_+	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	7.7e-106	50.1
3806864:3806893	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3811442 : 3881444

Enterobacteria_phage(42.86%)

integrase,transposase

attL 3817954:3817972|attR 3835988:3836006

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO08392.1\|3811442_3812015_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.4e-94	96.2
AXO08393.1\|3812088_3812589_-	transactivation protein	NA	NA	NA	NA
AXO08394.1\|3812585_3813320_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	5.2e-129	98.4
AXO08395.1\|3813559_3813757_+	hypothetical protein	NA	NA	NA	NA
AXO08396.1\|3813872_3814139_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.4e-44	97.7
AXO08397.1\|3814135_3814726_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	8.8e-71	100.0
AXO08398.1\|3814718_3815006_+	Derepression protein	Q7M2A0	Enterobacteria_phage	5.1e-48	98.9
AXO08399.1\|3814998_3815454_+	hypothetical protein	Q7M298	Enterobacteria_phage	7.2e-65	100.0
AXO08400.1\|3815589_3815910_+	hypothetical protein	NA	NA	NA	NA
AXO08401.1\|3815924_3818258_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.8
3817954:3817972	attL	NA	NA	NA	NA
AXO08402.1\|3818481_3818619_+\|integrase	attP region and P4int integrase	NA	NA	NA	NA
AXO08403.1\|3822515_3822734_-	DNA invertase	A0A1S6L009	Salmonella_phage	2.7e-09	70.0
AXO08404.1\|3823089_3824463_-	hypothetical protein	NA	NA	NA	NA
AXO08405.1\|3824607_3824805_+	hypothetical protein	NA	NA	NA	NA
AXO08406.1\|3824978_3825263_-	hypothetical protein	NA	NA	NA	NA
AXO08407.1\|3825457_3826774_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	3.0e-34	28.6
AXO08408.1\|3826903_3827500_+	hypothetical protein	A0A1B0VBK8	Salmonella_phage	2.1e-96	87.4
AXO08409.1\|3827586_3829203_-	hypothetical protein	NA	NA	NA	NA
AXO08410.1\|3829910_3830138_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AXO08411.1\|3830243_3830471_+	DUF3987 domain-containing protein	NA	NA	NA	NA
AXO08412.1\|3830719_3832153_+	DUF3987 domain-containing protein	NA	NA	NA	NA
AXO08413.1\|3832420_3833992_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-168	58.5
AXO08414.1\|3834011_3834359_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	5.2e-47	77.6
AXO08415.1\|3834358_3835009_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.4e-16	41.9
AXO08416.1\|3835722_3836286_+	inovirus Gp2 family protein	NA	NA	NA	NA
3835988:3836006	attR	NA	NA	NA	NA
AXO08417.1\|3839012_3840122_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	3.3e-26	35.0
AXO08418.1\|3840478_3841711_+	extracellular solute-binding protein	NA	NA	NA	NA
AXO08419.1\|3841773_3843081_+	sugar ABC transporter permease	NA	NA	NA	NA
AXO08420.1\|3843091_3843943_+	sugar ABC transporter permease	NA	NA	NA	NA
AXO08421.1\|3843947_3845150_+	galactosidase	NA	NA	NA	NA
AXO08422.1\|3845181_3847239_+	beta-galactosidase	NA	NA	NA	NA
AXO08423.1\|3847302_3847617_+	PTS sugar transporter	NA	NA	NA	NA
AXO08424.1\|3847753_3849025_-	maltoporin	NA	NA	NA	NA
AXO08425.1\|3849295_3850366_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.0e-69	42.5
AXO08426.1\|3851094_3852126_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.3e-166	94.6
AXO08427.1\|3852506_3853517_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	5.1e-18	28.3
AXO08428.1\|3853610_3855737_+	alpha-galactosidase	NA	NA	NA	NA
AXO08429.1\|3855791_3857069_+	MFS transporter	NA	NA	NA	NA
AXO08430.1\|3857065_3858496_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA
AXO08431.1\|3858559_3859075_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
AXO08432.1\|3859080_3859284_+	DUF2913 family protein	NA	NA	NA	NA
AXO08433.1\|3859300_3859657_+	DUF2913 family protein	NA	NA	NA	NA
AXO08434.1\|3859686_3860613_+	aminoimidazole riboside kinase	NA	NA	NA	NA
AXO08435.1\|3860712_3862209_+	carbohydrate porin	NA	NA	NA	NA
AXO08436.1\|3864024_3864396_-	hypothetical protein	NA	NA	NA	NA
AXO08437.1\|3864689_3866213_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-43	31.6
AXO08438.1\|3866972_3872708_-	DUF4011 domain-containing protein	NA	NA	NA	NA
AXO08439.1\|3872894_3874937_-	DUF262 domain-containing protein	NA	NA	NA	NA
AXO08440.1\|3874929_3876381_-	DUF262 domain-containing protein	NA	NA	NA	NA
AXO08441.1\|3877076_3877859_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.8e-138	99.2
AXO08442.1\|3877855_3878878_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.9e-199	98.8
AXO08443.1\|3880171_3881444_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.7e-170	95.3

DBSCAN-SWA_9

3970841 : 3984024

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO08526.1\|3970841_3973403_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
AXO08527.1\|3973508_3974165_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
AXO08528.1\|3974215_3974983_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
AXO08529.1\|3975178_3976087_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AXO08530.1\|3976083_3977346_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.2
AXO08531.1\|3977342_3977981_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AXO08532.1\|3977985_3978762_+	HPr family phosphocarrier protein	NA	NA	NA	NA
AXO08533.1\|3978850_3980215_+	GntP family transporter	NA	NA	NA	NA
AXO08534.1\|3980308_3981301_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
AXO08535.1\|3981363_3982503_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
AXO08536.1\|3982642_3983269_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
AXO08537.1\|3983262_3984024_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0

DBSCAN-SWA_10

4278702 : 4289984

Stx2-converting_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO08808.1\|4278702_4282116_-	DUF4145 domain-containing protein	Q6NDX2	Leptospira_phage	8.5e-17	26.2
AXO08809.1\|4282399_4282597_+	hypothetical protein	NA	NA	NA	NA
AXO08810.1\|4283540_4283804_-	hypothetical protein	A0A1L2CUJ8	Pectobacterium_phage	1.0e-26	71.6
AXO08811.1\|4284096_4285668_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
AXO08812.1\|4285687_4286035_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AXO08813.1\|4286034_4286712_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
AXO08814.1\|4286673_4286778_+	copper resistance protein	NA	NA	NA	NA
AXO08815.1\|4286977_4288060_+	ImmA/IrrE family metallo-endopeptidase	A0A075BTZ7	Microcystis_phage	5.5e-10	38.6
AXO08816.1\|4288062_4289007_-	hypothetical protein	NA	NA	NA	NA
AXO08817.1\|4289003_4289984_-	thymidylate synthase	A0A218MLB7	uncultured_virus	7.3e-22	34.2

DBSCAN-SWA_11

5052529 : 5074324

Morganella_phage(33.33%)

integrase,holin

attL 5045586:5045600|attR 5067798:5067812

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5045586:5045600	attL	NA	NA	NA	NA
AXO09552.1\|5052529_5053489_-	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	5.7e-11	28.0
AXO09553.1\|5053786_5054428_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
AXO09554.1\|5054493_5055210_-	ribonuclease PH	NA	NA	NA	NA
AXO09555.1\|5055141_5055324_+	hypothetical protein	NA	NA	NA	NA
AXO09556.1\|5055336_5056200_+	YicC family protein	NA	NA	NA	NA
AXO09557.1\|5056388_5057648_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.0e-193	78.1
AXO09558.1\|5057743_5058709_+	hypothetical protein	A0A1W6JPD1	Morganella_phage	3.0e-07	51.2
AXO09559.1\|5058823_5059027_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AXO09560.1\|5059026_5059458_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	3.9e-28	49.7
AXO09561.1\|5059470_5060304_+	antA/AntB antirepressor family protein	G9L6G1	Escherichia_phage	5.3e-21	47.5
AXO09562.1\|5060296_5060479_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXO09563.1\|5060472_5061540_+	ash family protein	A0A1C9IHV9	Salmonella_phage	7.5e-12	37.2
AXO09564.1\|5061532_5061727_+	hypothetical protein	NA	NA	NA	NA
AXO09565.1\|5061723_5061987_+\|holin	nicotinic acetylcholine receptor subunit beta	NA	NA	NA	NA
AXO09566.1\|5061983_5062205_+	hypothetical protein	NA	NA	NA	NA
AXO09567.1\|5062197_5062800_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.6e-25	36.3
AXO09568.1\|5062810_5063152_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	2.5e-33	61.5
AXO09569.1\|5063144_5063516_+	hypothetical protein	NA	NA	NA	NA
AXO09570.1\|5063502_5066259_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-298	57.0
AXO09571.1\|5066325_5066577_+	hypothetical protein	NA	NA	NA	NA
AXO09572.1\|5067021_5067483_+	DUF2824 family protein	Q2A0B3	Sodalis_phage	2.9e-61	72.2
AXO09573.1\|5067476_5068154_+	DNA transfer protein	Q2A0B2	Sodalis_phage	7.0e-56	71.6
5067798:5067812	attR	NA	NA	NA	NA
AXO09574.1\|5068153_5069575_+	acyltransferase	B6SCW4	Bacteriophage	3.7e-123	53.0
AXO09575.1\|5069574_5071680_+	injection protein	A0A2I7QQN9	Vibrio_phage	7.2e-91	37.1
AXO09865.1\|5071698_5072088_-	hypothetical protein	NA	NA	NA	NA
AXO09576.1\|5073000_5073483_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	1.5e-28	43.9
AXO09577.1\|5073486_5073864_+	hypothetical protein	NA	NA	NA	NA
AXO09578.1\|5073880_5074324_-	hypothetical protein	A0A1W6JPI4	Morganella_phage	4.8e-45	66.4

DBSCAN-SWA_12

5102461 : 5109408

Stx2-converting_phage(85.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO09866.1\|5102461_5103349_-	WYL domain-containing protein	A0A0R6PH67	Moraxella_phage	6.6e-30	27.7
AXO09597.1\|5103454_5104132_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
AXO09598.1\|5104131_5104479_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AXO09599.1\|5104498_5106070_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.8e-169	58.7
AXO09600.1\|5106398_5106626_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXO09601.1\|5106819_5107470_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.4e-16	41.9
AXO09602.1\|5107469_5107817_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	5.2e-47	77.6
AXO09603.1\|5107836_5109408_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-168	58.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031549

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP031546

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection