CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031556	Streptococcus agalactiae strain Sag27 chromosome, complete genome	1 crisprs	DEDDh,cas3,DinG,cas9,cas1,cas2,csn2,csm6,csa3	2	16	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031556_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031556_3

1787785-1788941

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT

17 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of CP031556_3

>merge|CP031556|3|1787785-1788941|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAAATTCTTGCCATTCAGCTAGAGTTACTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCGTTCAATCTGTTCTTGCTTTTGGTCATCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGGGTGTTAGATGATAATACCTTTTTTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACACCGTTGCGGTTGTTGTCGGTCACTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCTATTAACAATAGTTTTATCCAATTGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGAAAACAAGCGCAAAGCTGTCAGAAAACAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGTTATCAATGCTATATGGTTTCTCATCTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTTTAATTTTGAATAATATCATGTTTACTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATGTCATTGTGATTGTGGGAATACTTGTGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAAAAGATTTAAACTATCAAGCGTCAATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTCTAAATGCTGGTGACTGCTTTGCATAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAAAAGATTTAAACTATCAAGCGTCAATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCTTTTTTAGATAATGTGCGATCACGGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTACCAATGCTTCCATATCGCTTATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACTTGACGAATTGAAGATGACGGAATTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTTATACATTTACTAATCCATCAGCATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

>CP031556|3|1|1787785-1788875|PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAATTCTTGCCATTCAGCTAGAGTTACTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCGTTCAATCTGTTCTTGCTTTTGGTCATC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGGGTGTTAGATGATAATACCTTTTTTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACACCGTTGCGGTTGTTGTCGGTCACTCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCTATTAACAATAGTTTTATCCAATTGTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAAAACAAGCGCAAAGCTGTCAGAAAACA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGTTATCAATGCTATATGGTTTCTCATCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GTTTAATTTTGAATAATATCATGTTTACTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TATGTCATTGTGATTGTGGGAATACTTGTG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTAAATGCTGGTGACTGCTTTGCATAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCCTTTTTTAGATAATGTGCGATCACGGAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACCAATGCTTCCATATCGCTTATAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>CP031556|3|1|1787785-1788875|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAATTCTTGCCATTCAGCTAGAGTTACTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCGTTCAATCTGTTCTTGCTTTTGGTCATC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGGGTGTTAGATGATAATACCTTTTTTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACACCGTTGCGGTTGTTGTCGGTCACTCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCTATTAACAATAGTTTTATCCAATTGTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAAAACAAGCGCAAAGCTGTCAGAAAACA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGTTATCAATGCTATATGGTTTCTCATCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GTTTAATTTTGAATAATATCATGTTTACTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TATGTCATTGTGATTGTGGGAATACTTGTG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTAAATGCTGGTGACTGCTTTGCATAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCCTTTTTTAGATAATGTGCGATCACGGAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACCAATGCTTCCATATCGCTTATAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>CP031556|3|3|1787785-1788941|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAATTCTTGCCATTCAGCTAGAGTTACTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCGTTCAATCTGTTCTTGCTTTTGGTCATC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGGGTGTTAGATGATAATACCTTTTTTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACACCGTTGCGGTTGTTGTCGGTCACTCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCTATTAACAATAGTTTTATCCAATTGTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAAAACAAGCGCAAAGCTGTCAGAAAACA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGTTATCAATGCTATATGGTTTCTCATCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GTTTAATTTTGAATAATATCATGTTTACTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TATGTCATTGTGATTGTGGGAATACTTGTG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTAAATGCTGGTGACTGCTTTGCATAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCCTTTTTTAGATAATGTGCGATCACGGAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACCAATGCTTCCATATCGCTTATAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGCTAATTCTCATCTCACCGAGATGGATA
GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

Protein	Signature genes	Signature genes Name	Protein_function
CP031556.1\|AXO12381.1\|1796188_1796848_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
CP031556.1\|AXO12372.1\|1781710_1785823_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
CP031556.1\|AXO12377.1\|1789498_1789915_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
CP031556.1\|AXO12379.1\|1794060_1795194_+\|ISAs1-family-transposase-IS1548	unknown	unknown	gnl\|CDD\|227720
CP031556.1\|AXO12373.1\|1785824_1786694_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP031556.1\|AXO12378.1\|1790050_1791883_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP031556.1\|AXO12382.1\|1796856_1797321_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP031556.1\|AXO12384.1\|1797906_1800699_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
CP031556.1\|AXO12376.1\|1789195_1789366_+\|hypothetical-protein	unknown	unknown	unknown
CP031556.1\|AXO12368.1\|1778034_1779165_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
CP031556.1\|AXO12383.1\|1797320_1797755_+\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|234692
CP031556.1\|AXO12367.1\|1777562_1777943_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
CP031556.1\|AXO12366.1\|1777166_1777538_+\|DUF1722-domain-containing-protein	unknown	unknown	gnl\|CDD\|377982
CP031556.1\|AXO12380.1\|1795177_1796089_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380192
CP031556.1\|AXO12371.1\|1780666_1781323_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
CP031556.1\|AXO12369.1\|1779168_1779906_+\|acyl-[acyl-carrier-protein]-thioesterase	unknown	unknown	gnl\|CDD\|366738
CP031556.1\|AXO12385.1\|1800698_1801802_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
CP031556.1\|AXO12370.1\|1779906_1780677_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
CP031556.1\|AXO12374.1\|1786690_1787032_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP031556.1\|AXO12375.1\|1787018_1787684_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408

Protein	Function_ID	Function_description	E-value
CP031556.1\|AXO12381.1\|1796188_1796848_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	5.44358e-33
CP031556.1\|AXO12372.1\|1781710_1785823_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
CP031556.1\|AXO12377.1\|1789498_1789915_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
CP031556.1\|AXO12379.1\|1794060_1795194_+\|ISAs1-family-transposase-IS1548	gnl\|CDD\|227720	COG5433, COG5433, Transposase [DNA replication, recombination, and repair].	1.8759e-30
CP031556.1\|AXO12373.1\|1785824_1786694_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
CP031556.1\|AXO12378.1\|1790050_1791883_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP031556.1\|AXO12382.1\|1796856_1797321_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
CP031556.1\|AXO12384.1\|1797906_1800699_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
CP031556.1\|AXO12385.1\|1800698_1801802_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
CP031556.1\|AXO12368.1\|1778034_1779165_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP031556.1\|AXO12383.1\|1797320_1797755_+\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
CP031556.1\|AXO12367.1\|1777562_1777943_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
CP031556.1\|AXO12366.1\|1777166_1777538_+\|DUF1722-domain-containing-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
CP031556.1\|AXO12380.1\|1795177_1796089_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380192	NF033188, internalin_H, InlH/InlC2 family class 1 internalin. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin H (InlH), or internalin C2, two class 1 (LPXTG-type) internalins that are closely related, one apparently derived from the other through a recombination event.	2.15829e-10
CP031556.1\|AXO12371.1\|1780666_1781323_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
CP031556.1\|AXO12369.1\|1779168_1779906_+\|acyl-[acyl-carrier-protein]-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
CP031556.1\|AXO12370.1\|1779906_1780677_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
CP031556.1\|AXO12374.1\|1786690_1787032_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
CP031556.1\|AXO12375.1\|1787018_1787684_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	4.28312e-121

>CP031556.1|AXO12375.1|1787018_1787684_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEIKILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>CP031556.1|AXO12374.1|1786690_1787032_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>CP031556.1|AXO12373.1|1785824_1786694_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>CP031556.1|AXO12372.1|1781710_1785823_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>CP031556.1|AXO12371.1|1780666_1781323_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>CP031556.1|AXO12370.1|1779906_1780677_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>CP031556.1|AXO12369.1|1779168_1779906_+|acyl-[acyl-carrier-protein]-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>CP031556.1|AXO12368.1|1778034_1779165_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>CP031556.1|AXO12367.1|1777562_1777943_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>CP031556.1|AXO12366.1|1777166_1777538_+|DUF1722-domain-containing-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>CP031556.1|AXO12376.1|1789195_1789366_+|hypothetical-protein
MKGYNSNLMVKGLGCSTLYLIISLTALVLLVIAGVFFVINTCKLTRKAVENLSIIN
>CP031556.1|AXO12377.1|1789498_1789915_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>CP031556.1|AXO12378.1|1790050_1791883_+|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>CP031556.1|AXO12379.1|1794060_1795194_+|ISAs1-family-transposase-IS1548
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSDRLKELKVQFEQSLTSLDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQETLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG
>CP031556.1|AXO12380.1|1795177_1796089_+|leucine-rich-repeat-domain-containing-protein
MEKEAKQIIDLKRNLFKIDVRAQKDEEKVFMRTACLTPLSNLTKLQELYLDHNNVKNLSALSCKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQSTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>CP031556.1|AXO12381.1|1796188_1796848_+|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIIHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>CP031556.1|AXO12382.1|1796856_1797321_+|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>CP031556.1|AXO12383.1|1797320_1797755_+|peptide-methionine-(R)-S-oxide-reductase
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>CP031556.1|AXO12384.1|1797906_1800699_+|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKGSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>CP031556.1|AXO12385.1|1800698_1801802_+|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031556_1	1.3\|671911\|19\|CP031556\|CRT	671911-671929	19	CP031556.1	672199-672217	2	0.895
CP031556_1	1.7\|672163\|19\|CP031556\|CRT	672163-672181	19	CP031556.1	672223-672241	2	0.895

1. spacer 1.3|671911|19|CP031556|CRT matches to position: 672199-672217, mismatch: 2, identity: 0.895

ggcttagcttctggtttgg	CRISPR spacer
ggcttaacgtctggtttgg	Protospacer
******.* **********

2. spacer 1.7|672163|19|CP031556|CRT matches to position: 672223-672241, mismatch: 2, identity: 0.895

ggcttagcttctggcttaa	CRISPR spacer
ggtttggcttctggcttaa	Protospacer
**.**.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448726	Streptococcus phage Javan29, complete genome	26537-26583	0	1.0
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448726	Streptococcus phage Javan29, complete genome	26603-26649	0	1.0
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448726	Streptococcus phage Javan29, complete genome	26669-26715	0	1.0
CP031556_3	3.4\|1788019\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788019-1788048	30	MK448956	Streptococcus phage Javan48, complete genome	2174-2203	0	1.0
CP031556_3	3.4\|1788019\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788019-1788048	30	MK448749	Streptococcus phage Javan39, complete genome	2174-2203	0	1.0
CP031556_3	3.4\|1788019\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788019-1788048	30	MH853356	Streptococcus phage LF2, partial genome	18636-18665	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448829	Streptococcus phage Javan7, complete genome	16033-16062	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448736	Streptococcus phage Javan35, complete genome	16516-16545	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448781	Streptococcus phage Javan5, complete genome	18538-18567	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MH853355	Streptococcus phage LF1, complete genome	6890-6919	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448911	Streptococcus phage Javan34, complete genome	16516-16545	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448837	Streptococcus phage Javan10, complete genome	14562-14591	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448742	Streptococcus phage Javan37, complete genome	16352-16381	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MH853358	Streptococcus phage LF4, complete genome	6890-6919	0	1.0
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448916	Streptococcus phage Javan36, complete genome	16516-16545	0	1.0
CP031556_3	3.11\|1788481\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788481-1788510	30	MH853356	Streptococcus phage LF2, partial genome	1240-1269	0	1.0
CP031556_3	3.11\|1788481\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788481-1788510	30	MK448796	Streptococcus phage Javan53, complete genome	19525-19554	0	1.0
CP031556_3	3.11\|1788481\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788481-1788510	30	MK448851	Streptococcus phage Javan14, complete genome	17045-17074	0	1.0
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448928	Streptococcus phage Javan40, complete genome	26645-26691	1	0.979
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448728	Streptococcus phage Javan3, complete genome	26649-26695	1	0.979
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448809	Streptococcus phage Javan57, complete genome	26645-26691	1	0.979
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448872	Streptococcus phage Javan20, complete genome	26645-26691	1	0.979
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448802	Streptococcus phage Javan55, complete genome	26645-26691	1	0.979
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448999	Streptococcus phage Javan638, complete genome	24540-24586	1	0.979
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448776	Streptococcus phage Javan49, complete genome	26537-26583	1	0.979
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK449007	Streptococcus phage Javan8, complete genome	26523-26569	1	0.979
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448787	Streptococcus phage Javan51, complete genome	26523-26569	1	0.979
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448971	Streptococcus phage Javan52, complete genome	5153-5182	1	0.967
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448487	Streptococcus satellite phage Javan419, complete genome	1643-1672	1	0.967
CP031556_3	3.7\|1788217\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788217-1788246	30	MK448938	Streptococcus phage Javan44, complete genome	16517-16546	1	0.967
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448695	Streptococcus phage Javan181, complete genome	25465-25511	2	0.957
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448935	Streptococcus phage Javan424, complete genome	26621-26667	2	0.957
CP031556_2	2.1\|1490487\|47\|CP031556\|CRT	1490487-1490533	47	MK448936	Streptococcus phage Javan426, complete genome	26621-26667	2	0.957
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448668	Streptococcus phage Javan107, complete genome	26538-26584	2	0.957
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448666	Streptococcus phage Javan101, complete genome	26538-26584	2	0.957
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448840	Streptococcus phage Javan104, complete genome	26538-26584	2	0.957
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448670	Streptococcus phage Javan113, complete genome	26487-26533	2	0.957
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448854	Streptococcus phage Javan146, complete genome	6052-6081	2	0.933
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448851	Streptococcus phage Javan14, complete genome	4829-4858	2	0.933
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448928	Streptococcus phage Javan40, complete genome	26777-26823	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448728	Streptococcus phage Javan3, complete genome	26781-26827	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK449011	Streptococcus phage Javan92, complete genome	26163-26209	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448835	Streptococcus phage Javan93, complete genome	26163-26209	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448836	Streptococcus phage Javan95, complete genome	27238-27284	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448809	Streptococcus phage Javan57, complete genome	26777-26823	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448872	Streptococcus phage Javan20, complete genome	26777-26823	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448825	Streptococcus phage Javan639, complete genome	27238-27284	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448802	Streptococcus phage Javan55, complete genome	26777-26823	3	0.936
CP031556_2	2.3\|1490619\|47\|CP031556\|CRT	1490619-1490665	47	MK448999	Streptococcus phage Javan638, complete genome	24672-24718	3	0.936
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448796	Streptococcus phage Javan53, complete genome	5477-5506	3	0.9
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448928	Streptococcus phage Javan40, complete genome	26711-26757	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448922	Streptococcus phage Javan38, complete genome	26405-26451	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448728	Streptococcus phage Javan3, complete genome	26715-26761	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448717	Streptococcus phage Javan25, complete genome	26405-26451	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448906	Streptococcus phage Javan32, complete genome	26405-26451	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448836	Streptococcus phage Javan95, complete genome	27172-27218	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448809	Streptococcus phage Javan57, complete genome	26711-26757	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448827	Streptococcus phage Javan65, complete genome	26405-26451	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448872	Streptococcus phage Javan20, complete genome	26711-26757	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448825	Streptococcus phage Javan639, complete genome	27172-27218	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448802	Streptococcus phage Javan55, complete genome	26711-26757	4	0.915
CP031556_2	2.2\|1490553\|47\|CP031556\|CRT	1490553-1490599	47	MK448999	Streptococcus phage Javan638, complete genome	24606-24652	4	0.915
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448363	Streptococcus satellite phage Javan21, complete genome	1744-1773	4	0.867
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448502	Streptococcus satellite phage Javan45, complete genome	1744-1773	4	0.867
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448541	Streptococcus satellite phage Javan56, complete genome	1744-1773	4	0.867
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448549	Streptococcus satellite phage Javan58, complete genome	1744-1773	4	0.867
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448412	Streptococcus satellite phage Javan30, complete genome	1744-1773	4	0.867
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448479	Streptococcus satellite phage Javan41, complete genome	1744-1773	4	0.867
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448472	Streptococcus satellite phage Javan4, complete genome	1744-1773	4	0.867
CP031556_3	3.6\|1788151\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788151-1788180	30	MK448796	Streptococcus phage Javan53, complete genome	30266-30295	4	0.867
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448393	Streptococcus satellite phage Javan276, complete genome	10967-10996	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448491	Streptococcus satellite phage Javan43, complete genome	3439-3468	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448327	Streptococcus satellite phage Javan13, complete genome	3439-3468	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448380	Streptococcus satellite phage Javan24, complete genome	3439-3468	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448322	Streptococcus satellite phage Javan12, complete genome	3439-3468	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK448824	Streptococcus phage Javan637, complete genome	5897-5926	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK449002	Streptococcus phage Javan642, complete genome	5897-5926	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MK449003	Streptococcus phage Javan648, complete genome	5897-5926	5	0.833
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	AP018278	Calothrix sp. NIES-4101 plasmid plasmid5 DNA, complete genome	31346-31375	6	0.8
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	292766-292795	6	0.8
CP031556_3	3.10\|1788415\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788415-1788444	30	KX507046	Vibrio phage S4-7, complete genome	116913-116942	6	0.8
CP031556_3	3.12\|1788547\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788547-1788576	30	KX507046	Vibrio phage S4-7, complete genome	116913-116942	6	0.8
CP031556_3	3.16\|1788810\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788810-1788839	30	NC_047897	Lactobacillus phage Lenus, complete genome	65427-65456	6	0.8
CP031556_3	3.16\|1788810\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788810-1788839	30	AP013698	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C55A-MedDCM-OCT-S36-C68, * SEQUENCING IN PROGRESS *	17874-17903	6	0.8
CP031556_1	1.2\|671851\|31\|CP031556\|CRT	671851-671881	31	NC_047926	Lactobacillus phage Semele, complete genome	8767-8797	7	0.774
CP031556_1	1.2\|671851\|31\|CP031556\|CRT	671851-671881	31	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	468537-468567	7	0.774
CP031556_3	3.1\|1787821\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787821-1787850	30	NC_048041	Vibrio phage vB_VpS_PG07, complete genome	50681-50710	7	0.767
CP031556_3	3.1\|1787821\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787821-1787850	30	JF974297	Cyanophage KBS-S-1A, * SEQUENCING IN PROGRESS *, 16 unordered pieces	11023-11052	7	0.767
CP031556_3	3.2\|1787887\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787887-1787916	30	MF140432	Arthrobacter phage Teacup, complete genome	55361-55390	7	0.767
CP031556_3	3.3\|1787953\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787953-1787982	30	NZ_CP023411	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_1, complete sequence	11441-11470	7	0.767
CP031556_3	3.4\|1788019\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788019-1788048	30	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	465384-465413	7	0.767
CP031556_3	3.5\|1788085\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788085-1788114	30	NZ_AP014818	Geminocystis sp. NIES-3708 plasmid pGM03, complete sequence	7544-7573	7	0.767
CP031556_3	3.5\|1788085\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788085-1788114	30	MK504443	Lactobacillus phage 521B, complete genome	133148-133177	7	0.767
CP031556_3	3.5\|1788085\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788085-1788114	30	MK504446	Lactobacillus phage SAC12B, complete genome	132141-132170	7	0.767
CP031556_3	3.16\|1788810\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788810-1788839	30	NC_047925	Lactobacillus phage Nyseid, complete genome	67879-67908	7	0.767
CP031556_3	3.16\|1788810\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788810-1788839	30	KU052488	Lactobacillus phage SA-C12, complete genome	24549-24578	7	0.767
CP031556_3	3.16\|1788810\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788810-1788839	30	MN693473	Marine virus AFVG_25M504, complete genome	22237-22266	7	0.767
CP031556_1	1.2\|671851\|31\|CP031556\|CRT	671851-671881	31	MN694353	Marine virus AFVG_250M583, complete genome	53475-53505	8	0.742
CP031556_3	3.3\|1787953\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787953-1787982	30	NZ_CP027854	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-2, complete sequence	18490-18519	8	0.733
CP031556_3	3.3\|1787953\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1787953-1787982	30	NZ_CP013043	Clostridium perfringens strain JP55 plasmid pJFP55H, complete sequence	44939-44968	8	0.733
CP031556_3	3.4\|1788019\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788019-1788048	30	NC_047866	Aeromonas phage Ahp1, complete genome	4717-4746	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	89228-89257	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	22382-22411	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	110578-110607	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	1807-1836	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP014929	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-5, complete sequence	4518-4547	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	544241-544270	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	715248-715277	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	544290-544319	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	715264-715293	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	645889-645918	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	LR746310	Klebsiella phage vB_KpnM_05F genome assembly, chromosome: 1	125568-125597	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	MT157285	Klebsiella phage P-KP2, complete genome	148204-148233	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	HQ918180	Klebsiella phage KP27, complete genome	111147-111176	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	KT001918	Klebsiella phage Matisse, complete genome	114145-114174	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	KX130727	Escherichia phage phT4A, partial genome	106647-106676	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	KT321315	Enterobacter phage phiEap-3, complete genome	112834-112863	8	0.733
CP031556_3	3.8\|1788283\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788283-1788312	30	MN101221	Klebsiella phage KOX8, complete genome	120508-120537	8	0.733
CP031556_3	3.16\|1788810\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788810-1788839	30	AP018932	Escherichia phage KIT03 DNA, complete sequence	154828-154857	8	0.733
CP031556_3	3.4\|1788019\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788019-1788048	30	NZ_CP029363	Streptomyces globisporus strain TFH56 plasmid pTFSG2, complete sequence	29181-29210	9	0.7
CP031556_3	3.4\|1788019\|30\|CP031556\|PILER-CR,CRISPRCasFinder,CRT	1788019-1788048	30	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	715552-715581	9	0.7

1. spacer 2.1|1490487|47|CP031556|CRT matches to MK448726 (Streptococcus phage Javan29, complete genome) position: , mismatch: 0, identity: 1.0

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	Protospacer
***********************************************

2. spacer 2.2|1490553|47|CP031556|CRT matches to MK448726 (Streptococcus phage Javan29, complete genome) position: , mismatch: 0, identity: 1.0

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatcgagtattggttcaacggtatcttcta	Protospacer
***********************************************

3. spacer 2.3|1490619|47|CP031556|CRT matches to MK448726 (Streptococcus phage Javan29, complete genome) position: , mismatch: 0, identity: 1.0

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	Protospacer
***********************************************

4. spacer 3.4|1788019|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

acaccgttgcggttgttgtcggtcactcaa	CRISPR spacer
acaccgttgcggttgttgtcggtcactcaa	Protospacer
******************************

5. spacer 3.4|1788019|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

acaccgttgcggttgttgtcggtcactcaa	CRISPR spacer
acaccgttgcggttgttgtcggtcactcaa	Protospacer
******************************

6. spacer 3.4|1788019|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

acaccgttgcggttgttgtcggtcactcaa	CRISPR spacer
acaccgttgcggttgttgtcggtcactcaa	Protospacer
******************************

7. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

8. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

9. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

10. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

11. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

12. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

13. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

14. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

15. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttctcatctt	Protospacer
******************************

16. spacer 3.11|1788481|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

ttctaaatgctggtgactgctttgcataaa	CRISPR spacer
ttctaaatgctggtgactgctttgcataaa	Protospacer
******************************

17. spacer 3.11|1788481|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

ttctaaatgctggtgactgctttgcataaa	CRISPR spacer
ttctaaatgctggtgactgctttgcataaa	Protospacer
******************************

18. spacer 3.11|1788481|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 0, identity: 1.0

ttctaaatgctggtgactgctttgcataaa	CRISPR spacer
ttctaaatgctggtgactgctttgcataaa	Protospacer
******************************

19. spacer 2.1|1490487|47|CP031556|CRT matches to MK448928 (Streptococcus phage Javan40, complete genome) position: , mismatch: 1, identity: 0.979

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
caccatgacaaacttactaaatagtatcaaatctgtcgttagtaatg	Protospacer
****************** ****************************

20. spacer 2.1|1490487|47|CP031556|CRT matches to MK448728 (Streptococcus phage Javan3, complete genome) position: , mismatch: 1, identity: 0.979

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
caccatgacaaacttactaaatagtatcaaatctgtcgttagtaatg	Protospacer
****************** ****************************

21. spacer 2.1|1490487|47|CP031556|CRT matches to MK448809 (Streptococcus phage Javan57, complete genome) position: , mismatch: 1, identity: 0.979

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
caccatgacaaacttactaaatagtatcaaatctgtcgttagtaatg	Protospacer
****************** ****************************

22. spacer 2.1|1490487|47|CP031556|CRT matches to MK448872 (Streptococcus phage Javan20, complete genome) position: , mismatch: 1, identity: 0.979

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
caccatgacaaacttactaaatagtatcaaatctgtcgttagtaatg	Protospacer
****************** ****************************

23. spacer 2.1|1490487|47|CP031556|CRT matches to MK448802 (Streptococcus phage Javan55, complete genome) position: , mismatch: 1, identity: 0.979

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
caccatgacaaacttactaaatagtatcaaatctgtcgttagtaatg	Protospacer
****************** ****************************

24. spacer 2.1|1490487|47|CP031556|CRT matches to MK448999 (Streptococcus phage Javan638, complete genome) position: , mismatch: 1, identity: 0.979

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
caccatgacaaacttactcaatagtatcaaatctgtcgttagtaatg	Protospacer
******************.****************************

25. spacer 2.2|1490553|47|CP031556|CRT matches to MK448776 (Streptococcus phage Javan49, complete genome) position: , mismatch: 1, identity: 0.979

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
aacgattagttccattctatcgagtattggttcaacggtatcttcta	Protospacer
 **********************************************

26. spacer 2.2|1490553|47|CP031556|CRT matches to MK449007 (Streptococcus phage Javan8, complete genome) position: , mismatch: 1, identity: 0.979

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
aacgattagttccattctatcgagtattggttcaacggtatcttcta	Protospacer
 **********************************************

27. spacer 2.2|1490553|47|CP031556|CRT matches to MK448787 (Streptococcus phage Javan51, complete genome) position: , mismatch: 1, identity: 0.979

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
aacgattagttccattctatcgagtattggttcaacggtatcttcta	Protospacer
 **********************************************

28. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 1, identity: 0.967

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
gcgttcaatctgttcttgcttttggtcatc	Protospacer
 *****************************

29. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448487 (Streptococcus satellite phage Javan419, complete genome) position: , mismatch: 1, identity: 0.967

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ccgttcaagctgttcttgcttttggtcatc	Protospacer
******** *********************

30. spacer 3.7|1788217|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 1, identity: 0.967

agttatcaatgctatatggtttctcatctt	CRISPR spacer
agttatcaatgctatatggtttttcatctt	Protospacer
**********************.*******

31. spacer 2.1|1490487|47|CP031556|CRT matches to MK448695 (Streptococcus phage Javan181, complete genome) position: , mismatch: 2, identity: 0.957

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
cagcatgacaaacttactcaatagtatcaaatctgtcgttagtaatg	Protospacer
** ***************.****************************

32. spacer 2.1|1490487|47|CP031556|CRT matches to MK448935 (Streptococcus phage Javan424, complete genome) position: , mismatch: 2, identity: 0.957

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
cactatgacaaacttactcaatagtatcaaatctgtcgttagtaatg	Protospacer
***.**************.****************************

33. spacer 2.1|1490487|47|CP031556|CRT matches to MK448936 (Streptococcus phage Javan426, complete genome) position: , mismatch: 2, identity: 0.957

caccatgacaaacttacttaatagtatcaaatctgtcgttagtaatg	CRISPR spacer
cactatgacaaacttactcaatagtatcaaatctgtcgttagtaatg	Protospacer
***.**************.****************************

34. spacer 2.3|1490619|47|CP031556|CRT matches to MK448668 (Streptococcus phage Javan107, complete genome) position: , mismatch: 2, identity: 0.957

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
aaccatctcaggtgtcctaagtggtatttcaagcacagtgtcctctg	Protospacer
********************************.******* ******

35. spacer 2.3|1490619|47|CP031556|CRT matches to MK448666 (Streptococcus phage Javan101, complete genome) position: , mismatch: 2, identity: 0.957

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
aaccatctcaggtgtcctaagtggtatttcaagcacagtgtcctctg	Protospacer
********************************.******* ******

36. spacer 2.3|1490619|47|CP031556|CRT matches to MK448840 (Streptococcus phage Javan104, complete genome) position: , mismatch: 2, identity: 0.957

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
aaccatctcaggtgtcctaagtggtatttcaagcacagtgtcctctg	Protospacer
********************************.******* ******

37. spacer 2.3|1490619|47|CP031556|CRT matches to MK448670 (Streptococcus phage Javan113, complete genome) position: , mismatch: 2, identity: 0.957

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
aaccatctcaggtgtcctaagtggtatttcaagcacagtgtcctctg	Protospacer
********************************.******* ******

38. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 2, identity: 0.933

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
gcgttcaatctgttcttgctttttgtcatc	Protospacer
 ********************** ******

39. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 2, identity: 0.933

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ccgttcaagctgttctcgcttttggtcatc	Protospacer
******** *******.*************

40. spacer 2.3|1490619|47|CP031556|CRT matches to MK448928 (Streptococcus phage Javan40, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

41. spacer 2.3|1490619|47|CP031556|CRT matches to MK448728 (Streptococcus phage Javan3, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

42. spacer 2.3|1490619|47|CP031556|CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

43. spacer 2.3|1490619|47|CP031556|CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

44. spacer 2.3|1490619|47|CP031556|CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

45. spacer 2.3|1490619|47|CP031556|CRT matches to MK448809 (Streptococcus phage Javan57, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

46. spacer 2.3|1490619|47|CP031556|CRT matches to MK448872 (Streptococcus phage Javan20, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

47. spacer 2.3|1490619|47|CP031556|CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

48. spacer 2.3|1490619|47|CP031556|CRT matches to MK448802 (Streptococcus phage Javan55, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

49. spacer 2.3|1490619|47|CP031556|CRT matches to MK448999 (Streptococcus phage Javan638, complete genome) position: , mismatch: 3, identity: 0.936

aaccatctcaggtgtcctaagtggtatttcaaacacagtgacctctg	CRISPR spacer
tactatctcaggtgtcctaagtggtatttcaaacacagtgtcctctg	Protospacer
 **.************************************ ******

50. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 3, identity: 0.9

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
gcgttcaatctgttcttgcttttgctcgtc	Protospacer
 *********************** **.**

51. spacer 2.2|1490553|47|CP031556|CRT matches to MK448928 (Streptococcus phage Javan40, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

52. spacer 2.2|1490553|47|CP031556|CRT matches to MK448922 (Streptococcus phage Javan38, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

53. spacer 2.2|1490553|47|CP031556|CRT matches to MK448728 (Streptococcus phage Javan3, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

54. spacer 2.2|1490553|47|CP031556|CRT matches to MK448717 (Streptococcus phage Javan25, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

55. spacer 2.2|1490553|47|CP031556|CRT matches to MK448906 (Streptococcus phage Javan32, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

56. spacer 2.2|1490553|47|CP031556|CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatcgagtattggcgcaacggtatcttccg	Protospacer
******************************. *************..

57. spacer 2.2|1490553|47|CP031556|CRT matches to MK448809 (Streptococcus phage Javan57, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

58. spacer 2.2|1490553|47|CP031556|CRT matches to MK448827 (Streptococcus phage Javan65, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

59. spacer 2.2|1490553|47|CP031556|CRT matches to MK448872 (Streptococcus phage Javan20, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

60. spacer 2.2|1490553|47|CP031556|CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatcgagtattggcgcaacggtatcttccg	Protospacer
******************************. *************..

61. spacer 2.2|1490553|47|CP031556|CRT matches to MK448802 (Streptococcus phage Javan55, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

62. spacer 2.2|1490553|47|CP031556|CRT matches to MK448999 (Streptococcus phage Javan638, complete genome) position: , mismatch: 4, identity: 0.915

cacgattagttccattctatcgagtattggttcaacggtatcttcta	CRISPR spacer
cacgattagttccattctatctagtattggctcaacggtatcttccg	Protospacer
********************* ********.**************..

63. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448363 (Streptococcus satellite phage Javan21, complete genome) position: , mismatch: 4, identity: 0.867

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttattcaagctgttcttgcttttggtcatc	Protospacer
...***** *********************

64. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448502 (Streptococcus satellite phage Javan45, complete genome) position: , mismatch: 4, identity: 0.867

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttattcaagctgttcttgcttttggtcatc	Protospacer
...***** *********************

65. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448541 (Streptococcus satellite phage Javan56, complete genome) position: , mismatch: 4, identity: 0.867

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttattcaagctgttcttgcttttggtcatc	Protospacer
...***** *********************

66. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448549 (Streptococcus satellite phage Javan58, complete genome) position: , mismatch: 4, identity: 0.867

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttattcaagctgttcttgcttttggtcatc	Protospacer
...***** *********************

67. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448412 (Streptococcus satellite phage Javan30, complete genome) position: , mismatch: 4, identity: 0.867

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttattcaagctgttcttgcttttggtcatc	Protospacer
...***** *********************

68. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448479 (Streptococcus satellite phage Javan41, complete genome) position: , mismatch: 4, identity: 0.867

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttattcaagctgttcttgcttttggtcatc	Protospacer
...***** *********************

69. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448472 (Streptococcus satellite phage Javan4, complete genome) position: , mismatch: 4, identity: 0.867

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttattcaagctgttcttgcttttggtcatc	Protospacer
...***** *********************

70. spacer 3.6|1788151|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 4, identity: 0.867

tgaaaacaagcgcaaagctgtcagaaaaca	CRISPR spacer
taacaacaagcgtaaagctgtcagaaaaaa	Protospacer
*.* ********.*************** *

71. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448393 (Streptococcus satellite phage Javan276, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
tttttcaagctgttcttgctttgggtcatc	Protospacer
.. ***** ************* *******

72. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448491 (Streptococcus satellite phage Javan43, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
gcaatcaagctgttcttgcttttggttatc	Protospacer
 *. **** *****************.***

73. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448327 (Streptococcus satellite phage Javan13, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
gcaatcaagctgttcttgcttttggttatc	Protospacer
 *. **** *****************.***

74. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448380 (Streptococcus satellite phage Javan24, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
gcaatcaagctgttcttgcttttggttatc	Protospacer
 *. **** *****************.***

75. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448322 (Streptococcus satellite phage Javan12, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
gcaatcaagctgttcttgcttttggttatc	Protospacer
 *. **** *****************.***

76. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ccgttcaatctgttcttgcttagcttcgtc	Protospacer
*********************    **.**

77. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ccgttcaatctgttcttgcttagcttcgtc	Protospacer
*********************    **.**

78. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 5, identity: 0.833

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ccgttcaatctgttcttgcttagcttcgtc	Protospacer
*********************    **.**

79. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to AP018278 (Calothrix sp. NIES-4101 plasmid plasmid5 DNA, complete genome) position: , mismatch: 6, identity: 0.8

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
cagttcgatctgttcttgctttttaccagc	Protospacer
* ****.**************** ..** *

80. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 6, identity: 0.8

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctttaattttgaaaaatatcattttaattt	Protospacer
 ************ ******** ** *.*.

81. spacer 3.10|1788415|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to KX507046 (Vibrio phage S4-7, complete genome) position: , mismatch: 6, identity: 0.8

ttaaaagatttaaactatcaagcgtcaatt	CRISPR spacer
ttgaaagatttaaacaatcaagcgataaaa	Protospacer
**.************ ******** .**

82. spacer 3.12|1788547|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to KX507046 (Vibrio phage S4-7, complete genome) position: , mismatch: 6, identity: 0.8

ttaaaagatttaaactatcaagcgtcaatt	CRISPR spacer
ttgaaagatttaaacaatcaagcgataaaa	Protospacer
**.************ ******** .**

83. spacer 3.16|1788810|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 6, identity: 0.8

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggatggtactgttactaatccatcagcatt	Protospacer
 *.* .***  *******************

84. spacer 3.16|1788810|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to AP013698 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C55A-MedDCM-OCT-S36-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

-tggttatacatttactaatccatcagcatt	CRISPR spacer
ctcagta-acagttactaatacatcagcatt	Protospacer
 * . ** *** ******** **********

85. spacer 1.2|671851|31|CP031556|CRT matches to NC_047926 (Lactobacillus phage Semele, complete genome) position: , mismatch: 7, identity: 0.774

ggcttaacgtctggcttagcttctggtttgg	CRISPR spacer
gctggaacttctggcttagcttctggttcag	Protospacer
* .  *** *******************..*

86. spacer 1.2|671851|31|CP031556|CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

ggcttaacgtctggcttagcttctggtttgg	CRISPR spacer
ggcttcacttctggcttagcttctttttcta	Protospacer
***** ** ***************  **. .

87. spacer 3.1|1787821|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NC_048041 (Vibrio phage vB_VpS_PG07, complete genome) position: , mismatch: 7, identity: 0.767

taaattcttgccattcagctagagttactt	CRISPR spacer
cttctgcttcccattccgctagagttactt	Protospacer
.   * *** ****** *************

88. spacer 3.1|1787821|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to JF974297 (Cyanophage KBS-S-1A, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces) position: , mismatch: 7, identity: 0.767

taaattcttgccattcagctagagttactt	CRISPR spacer
ccaatccttgccattcagctagatcagctt	Protospacer
. ***.***************** . .***

89. spacer 3.2|1787887|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MF140432 (Arthrobacter phage Teacup, complete genome) position: , mismatch: 7, identity: 0.767

ccgttcaatctgttcttgcttttggtcatc	CRISPR spacer
ttgttcaatctgttcttgcttctgctggtg	Protospacer
..*******************.** * .*

90. spacer 3.3|1787953|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023411 (Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_1, complete sequence) position: , mismatch: 7, identity: 0.767

aagggtgttagatgataataccttttttaa	CRISPR spacer
aatctatttagattatgataccttttttaa	Protospacer
**     ****** **.*************

91. spacer 3.4|1788019|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.767

acaccgttgcggttgttgtcggtcactcaa---	CRISPR spacer
actccgttgcggtggttgtcggt---gcagagt	Protospacer
** ********** *********    **.

92. spacer 3.5|1788085|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014818 (Geminocystis sp. NIES-3708 plasmid pGM03, complete sequence) position: , mismatch: 7, identity: 0.767

tctattaacaatagttttatccaattgttt	CRISPR spacer
attattaacaatagttgtatcaaatgctat	Protospacer
 .************** **** ***  * *

93. spacer 3.5|1788085|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 7, identity: 0.767

tctattaacaatagttttatccaattgttt	CRISPR spacer
atgattaacaatagttttatctaagtttat	Protospacer
 . ******************.** * * *

94. spacer 3.5|1788085|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 7, identity: 0.767

tctattaacaatagttttatccaattgttt	CRISPR spacer
atgattaacaatagttttatctaagtttat	Protospacer
 . ******************.** * * *

95. spacer 3.16|1788810|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NC_047925 (Lactobacillus phage Nyseid, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggacggtactgttactaatccatcagcatt	Protospacer
 *.. .***  *******************

96. spacer 3.16|1788810|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to KU052488 (Lactobacillus phage SA-C12, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggacggtactgttactaatccatcagcatt	Protospacer
 *.. .***  *******************

97. spacer 3.16|1788810|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MN693473 (Marine virus AFVG_25M504, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
tggtgatacatttactaatcctatgccatc	Protospacer
**** ****************  .. ***.

98. spacer 1.2|671851|31|CP031556|CRT matches to MN694353 (Marine virus AFVG_250M583, complete genome) position: , mismatch: 8, identity: 0.742

ggcttaacgtctggcttagcttctggtttgg	CRISPR spacer
atcttaatgtctgtcttagcttctgtcatgt	Protospacer
. *****.***** *********** . **

99. spacer 3.3|1787953|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027854 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-2, complete sequence) position: , mismatch: 8, identity: 0.733

aagggtgttagatgataataccttttttaa	CRISPR spacer
tggggtgttaaatgataaaacctttgatcg	Protospacer
 .********.******* ******  * .

100. spacer 3.3|1787953|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013043 (Clostridium perfringens strain JP55 plasmid pJFP55H, complete sequence) position: , mismatch: 8, identity: 0.733

aagggtgttagatgataataccttttttaa	CRISPR spacer
tcttttgttagatgatatttccttttttta	Protospacer
     ************ * ******** *

101. spacer 3.4|1788019|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NC_047866 (Aeromonas phage Ahp1, complete genome) position: , mismatch: 8, identity: 0.733

acaccgttgcggttgttgtcggtcactcaa	CRISPR spacer
tcatcgttgcggttgtcgtcggtcgtgaca	Protospacer
 **.************.*******..   *

102. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
attttattttgaataatatcatttacatca	Protospacer
.*** ***************** * .*..

103. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
tcttgtttttgaataatatcatctttagat	Protospacer
 .**. **************** ****  .

104. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
tcttgtttttgaataatatcatctttagat	Protospacer
 .**. **************** ****  .

105. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctataatttttaaaaatatcatgtttttat	Protospacer
 * ******* ** ************ . .

106. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014929 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-5, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
atttattttttaataatatcatgtaatttt	Protospacer
.**** **** *************   .*.

107. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
tcttgtttttgaataatatcatctttagat	Protospacer
 .**. **************** ****  .

108. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
tcttgtttttgaataatatcatctttagat	Protospacer
 .**. **************** ****  .

109. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
tcttgtttttgaataatatcatctttagat	Protospacer
 .**. **************** ****  .

110. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
tcttgtttttgaataatatcatctttagat	Protospacer
 .**. **************** ****  .

111. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
tcttgtttttgaataatatcatctttagat	Protospacer
 .**. **************** ****  .

112. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to LR746310 (Klebsiella phage vB_KpnM_05F genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctatctacttgaataatatcaagtttactg	Protospacer
 * *   .************* *******

113. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MT157285 (Klebsiella phage P-KP2, complete genome) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctatctacttgaataatatcaagtttactg	Protospacer
 * *   .************* *******

114. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to HQ918180 (Klebsiella phage KP27, complete genome) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctatctacttgaataatatcaagtttactg	Protospacer
 * *   .************* *******

115. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to KT001918 (Klebsiella phage Matisse, complete genome) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctatctacttgaataatatcaagtttactg	Protospacer
 * *   .************* *******

116. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to KX130727 (Escherichia phage phT4A, partial genome) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctatctacttgaataatatcaagtttactg	Protospacer
 * *   .************* *******

117. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to KT321315 (Enterobacter phage phiEap-3, complete genome) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctatctacttgaataatatcaagtttactg	Protospacer
 * *   .************* *******

118. spacer 3.8|1788283|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to MN101221 (Klebsiella phage KOX8, complete genome) position: , mismatch: 8, identity: 0.733

gtttaattttgaataatatcatgtttactc	CRISPR spacer
ctatctacttgaataatatcaagtttactg	Protospacer
 * *   .************* *******

119. spacer 3.16|1788810|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to AP018932 (Escherichia phage KIT03 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

tggttatacatttactaatccatcagcatt	CRISPR spacer
gggtaatacatttactaatccaagcgaagg	Protospacer
 *** *****************   * *

120. spacer 3.4|1788019|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029363 (Streptomyces globisporus strain TFH56 plasmid pTFSG2, complete sequence) position: , mismatch: 9, identity: 0.7

acaccgttgcggttgttgtcggtcactcaa	CRISPR spacer
gggccgttgcggatgttgtcggtcagcagc	Protospacer
. .********* ************ . .

121. spacer 3.4|1788019|30|CP031556|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.7

acaccgttgcggttgttgtcggtcactcaa	CRISPR spacer
acaccgttgcgggagttgtcggtgtagtgc	Protospacer
************  *********    ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

208483 : 264437

Streptococcus_phage(47.62%)

tRNA,coat,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO10869.1\|208483_209650_+\|transposase	IS30-like element ISSag9 family transposase	NA	NA	NA	NA
AXO10870.1\|209983_211366_-	MFS transporter	NA	NA	NA	NA
AXO10871.1\|211373_212588_-	amidohydrolase	NA	NA	NA	NA
AXO12767.1\|212866_213751_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	7.1e-24	27.9
AXO10872.1\|213811_214165_+	DUF3397 domain-containing protein	NA	NA	NA	NA
AXO12768.1\|214346_215580_+\|transposase	IS3-like element IS861 family transposase	A0A1B1P773	Bacillus_phage	3.4e-64	50.0
AXO10873.1\|215629_217345_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	3.7e-37	30.8
AXO10874.1\|217426_219877_-	cell division protein FtsK	S5VNE3	Mycobacterium_phage	8.7e-88	51.4
AXO10875.1\|220042_220846_+	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.5e-20	38.4
AXO10876.1\|220897_221731_-	metal ABC transporter permease	NA	NA	NA	NA
AXO10877.1\|221732_222449_-	metal ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.6e-19	32.5
AXO10878.1\|222619_223546_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
AXO10879.1\|223712_224360_+	metal-dependent transcriptional regulator	NA	NA	NA	NA
AXO10880.1\|224399_225089_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
AXO10881.1\|225098_225368_-	hypothetical protein	NA	NA	NA	NA
AXO10882.1\|225367_225922_-	NUDIX hydrolase	NA	NA	NA	NA
AXO10883.1\|225942_227322_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	A0A2K9L4K9	Tupanvirus	2.6e-33	37.2
AXO10884.1\|227463_227559_+	hypothetical protein	NA	NA	NA	NA
AXO10885.1\|227565_227979_-	VOC family protein	NA	NA	NA	NA
AXO10886.1\|227991_228369_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
AXO10887.1\|228457_229414_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
AXO10888.1\|230100_230799_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AXO10889.1\|230791_231028_-	DUF2829 domain-containing protein	NA	NA	NA	NA
AXO10890.1\|231117_231366_-	hypothetical protein	NA	NA	NA	NA
AXO10891.1\|231563_232064_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXO10892.1\|232303_233572_-	glycosyltransferase	NA	NA	NA	NA
AXO10893.1\|233579_234384_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXO10894.1\|234373_234577_-	glycosyltransferase	NA	NA	NA	NA
AXO10895.1\|234716_236876_-	hypothetical protein	NA	NA	NA	NA
AXO12769.1\|236882_238316_-\|coat	spore coat protein CotH	NA	NA	NA	NA
AXO10896.1\|238320_238998_-	DUF4956 domain-containing protein	NA	NA	NA	NA
AXO10897.1\|239049_239745_-	VTC domain-containing protein	NA	NA	NA	NA
AXO10898.1\|240110_241448_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
AXO10899.1\|241643_243641_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.3e-97	39.6
AXO10900.1\|243783_244659_+	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
AXO10901.1\|244816_245512_-	DUF1275 domain-containing protein	NA	NA	NA	NA
AXO10902.1\|245526_245649_-	hypothetical protein	NA	NA	NA	NA
AXO10903.1\|245847_247065_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AXO10904.1\|247048_247891_+	alpha/beta hydrolase	NA	NA	NA	NA
AXO10905.1\|247967_248795_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	4.3e-124	78.0
AXO10906.1\|248834_249191_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.5e-41	71.8
AXO10907.1\|249192_249669_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.0e-37	50.3
AXO10908.1\|249723_250905_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.0e-168	75.6
AXO10909.1\|250967_251516_-	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
AXO10910.1\|252808_253444_+	copper homeostasis protein CutC	NA	NA	NA	NA
AXO10911.1\|253487_253592_-	hypothetical protein	NA	NA	NA	NA
AXO10912.1\|253576_253738_+	hypothetical protein	NA	NA	NA	NA
AXO12770.1\|253713_254577_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	70.4
AXO10913.1\|254582_254909_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
AXO10914.1\|254938_255802_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.3e-74	49.7
AXO10915.1\|255821_256457_-	thymidylate kinase	M1PSC7	Streptococcus_phage	2.8e-67	61.1
AXO10916.1\|256665_257832_+\|transposase	IS30-like element ISSag9 family transposase	NA	NA	NA	NA
AXO10917.1\|258096_258756_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	1.5e-63	55.1
AXO10918.1\|258774_259485_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-18	28.5
AXO10919.1\|259484_260249_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.4e-14	24.3
AXO10920.1\|260249_261203_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AXO10921.1\|261205_262075_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AXO10922.1\|262180_263347_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXO10923.1\|263501_263747_-	DUF2129 domain-containing protein	NA	NA	NA	NA
AXO10924.1\|263846_264437_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.7e-53	54.6

DBSCAN-SWA_2

739344 : 755922

Streptococcus_phage(71.43%)

integrase

attL 738511:738530|attR 753325:753344

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
738511:738530	attL	NA	NA	NA	NA
AXO11385.1\|739344_739851_-	DUF4065 domain-containing protein	D7RWK7	Brochothrix_phage	3.0e-35	48.8
AXO11386.1\|740344_740731_-	ArpU family transcriptional regulator	NA	NA	NA	NA
AXO11387.1\|740705_741068_-	DUF1492 domain-containing protein	NA	NA	NA	NA
AXO11388.1\|741091_741271_-	hypothetical protein	NA	NA	NA	NA
AXO11389.1\|741468_741957_-	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	2.5e-47	56.2
AXO11390.1\|742030_742570_-	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	1.0e-25	56.2
AXO11391.1\|742750_742924_-	DUF2758 domain-containing protein	A0A1X9I5U0	Streptococcus_phage	3.3e-10	57.9
AXO12782.1\|743207_744701_-	DNA primase	A0A1X9I717	Streptococcus_phage	6.8e-245	83.8
AXO11392.1\|744864_745713_-	hypothetical protein	A0A1X9I6L2	Streptococcus_phage	4.4e-124	75.4
AXO11393.1\|745713_745986_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	6.1e-19	60.0
AXO11394.1\|745988_746318_-	hypothetical protein	NA	NA	NA	NA
AXO12783.1\|746330_746522_-	hypothetical protein	NA	NA	NA	NA
AXO11395.1\|746521_746854_-	hypothetical protein	NA	NA	NA	NA
AXO11396.1\|747096_747366_-	phage antirepressor protein	NA	NA	NA	NA
AXO11397.1\|747365_747989_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	2.9e-40	43.4
AXO11398.1\|747998_748751_-	BRO-like protein	A0A0A7RW33	Clostridium_phage	3.3e-22	54.1
AXO11399.1\|748787_748976_-	XRE family transcriptional regulator	A0A0B5A7F0	Streptococcus_phage	6.5e-12	60.7
AXO11400.1\|749137_749923_+	XRE family transcriptional regulator	A0A1X9I5R1	Streptococcus_phage	2.9e-77	58.7
AXO11401.1\|750022_750232_+	NINE protein	NA	NA	NA	NA
AXO11402.1\|750750_751716_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	7.1e-86	51.1
AXO11403.1\|752047_753220_+\|integrase	site-specific integrase	A0A1X9I5Y5	Streptococcus_phage	1.6e-153	69.6
AXO11404.1\|753326_753938_-	30S ribosomal protein S4	NA	NA	NA	NA
753325:753344	attR	NA	NA	NA	NA
AXO11405.1\|754267_754555_-	hypothetical protein	NA	NA	NA	NA
AXO11406.1\|754566_755922_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.2e-152	62.6

DBSCAN-SWA_3

764242 : 771446

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO11414.1\|764242_764947_-	lytic transglycosylase domain-containing protein	A0A2H4J6C5	uncultured_Caudovirales_phage	4.2e-27	56.6
AXO11415.1\|765052_765592_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	6.7e-17	45.8
AXO11416.1\|765807_766602_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
AXO11417.1\|766594_767437_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	2.0e-15	28.5
AXO11418.1\|767412_768252_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
AXO11419.1\|768251_768794_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AXO11420.1\|768916_770200_-	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	2.2e-05	23.6
AXO11421.1\|770201_771446_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	3.7e-87	41.3

DBSCAN-SWA_4

835591 : 843697

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO11466.1\|835591_837046_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-53	32.5
AXO11467.1\|837073_838096_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.2e-62	42.4
AXO11468.1\|838263_838812_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-25	35.6
AXO11469.1\|838834_839587_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXO11470.1\|839606_841154_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	3.0e-78	49.2
AXO11471.1\|841346_842246_+	zoocin A	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
AXO11472.1\|842392_843697_+	LysM peptidoglycan-binding domain-containing protein	A0A2D1GNZ3	Streptomyces_phage	3.7e-05	40.5

DBSCAN-SWA_5

1376786 : 1510127

142

Streptococcus_phage(85.0%)

tail,terminase,capsid,holin,head,transposase,portal,protease,integrase

attL 1378398:1378457|attR 1461079:1461938

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO11987.1\|1376786_1377983_+	voltage-gated chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	4.6e-103	54.5
1378398:1378457	attL	NA	NA	NA	NA
AXO11988.1\|1378435_1379240_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXO11989.1\|1379423_1379771_+	50S ribosomal protein L19	NA	NA	NA	NA
AXO11990.1\|1379995_1381075_-\|integrase	site-specific integrase	A0A1X9IGD8	Lactococcus_phage	3.2e-63	39.8
AXO11991.1\|1381198_1381402_-	hypothetical protein	O34033	Streptococcus_phage	1.7e-10	48.4
AXO11992.1\|1381504_1382062_-	GTP pyrophosphokinase	Q0H269	Geobacillus_phage	1.6e-18	30.2
AXO11993.1\|1382063_1382861_-	XRE family transcriptional regulator	A0A1S5S8S8	Streptococcus_phage	6.7e-66	75.9
AXO11994.1\|1383482_1383665_-	DUF1508 domain-containing protein	NA	NA	NA	NA
AXO11995.1\|1383722_1383881_+	hypothetical protein	J7KH24	Streptococcus_phage	1.3e-21	92.3
AXO11996.1\|1383912_1384101_+	hypothetical protein	NA	NA	NA	NA
AXO11997.1\|1384102_1384945_-	DUF4393 domain-containing protein	NA	NA	NA	NA
AXO11998.1\|1385003_1385195_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXO11999.1\|1385261_1386182_+	DUF3102 domain-containing protein	J7KDG2	Streptococcus_phage	4.6e-74	79.0
AXO12000.1\|1386178_1386634_+	hypothetical protein	A0A0A0YSF8	Streptococcus_phage	1.6e-11	38.7
AXO12001.1\|1387059_1387368_-	hypothetical protein	NA	NA	NA	NA
AXO12002.1\|1387473_1387704_+	hypothetical protein	NA	NA	NA	NA
AXO12003.1\|1388111_1388204_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
AXO12004.1\|1389115_1389556_+	hypothetical protein	NA	NA	NA	NA
AXO12005.1\|1389672_1390587_+	replication protein	A0A2I6QQV2	Streptococcus_phage	9.2e-59	75.4
AXO12006.1\|1390596_1391439_+	ATP-binding protein	E8ZDI3	Streptococcus_phage	1.3e-48	39.6
AXO12007.1\|1391438_1391627_+	hypothetical protein	J7KBQ4	Streptococcus_phage	2.6e-16	95.7
AXO12008.1\|1391613_1391868_+	hypothetical protein	J7KK18	Streptococcus_phage	2.2e-42	98.8
AXO12009.1\|1391870_1392032_+	hypothetical protein	J7KDI4	Streptococcus_phage	5.2e-18	86.8
AXO12010.1\|1392033_1392363_+	hypothetical protein	J7KGX3	Streptococcus_phage	4.9e-47	85.3
AXO12011.1\|1392365_1393328_+	recombinase RecT	J7KDK3	Streptococcus_phage	2.0e-173	96.2
AXO12012.1\|1393324_1394122_+	hypothetical protein	J7KGZ1	Streptococcus_phage	1.1e-140	90.9
AXO12013.1\|1394282_1394480_+	hypothetical protein	J7KIX6	Streptococcus_phage	1.8e-25	93.8
AXO12014.1\|1394469_1394946_+	RusA family crossover junction endodeoxyribonuclease	J7KBT1	Streptococcus_phage	1.3e-59	98.2
AXO12015.1\|1394935_1395283_+	hypothetical protein	J7KK12	Streptococcus_phage	2.0e-51	83.5
AXO12016.1\|1395294_1395585_+	DUF1599 domain-containing protein	J7KBY0	Streptococcus_phage	6.3e-22	98.1
AXO12017.1\|1395568_1395976_+	hypothetical protein	A0A141E233	Streptococcus_phage	6.8e-14	38.2
AXO12801.1\|1396099_1396585_+	class I SAM-dependent methyltransferase	A0A097PAU8	Streptococcus_pyogenes_phage	2.3e-85	88.8
AXO12018.1\|1396732_1397092_+	DUF1642 domain-containing protein	Q9MCL5	Streptococcus_virus	4.0e-18	45.8
AXO12019.1\|1397123_1397423_+	hypothetical protein	M1PFH6	Streptococcus_phage	9.7e-18	45.4
AXO12020.1\|1397440_1397707_+	hypothetical protein	NA	NA	NA	NA
AXO12021.1\|1398096_1398531_+	ArpU family transcriptional regulator	J7KDQ1	Streptococcus_phage	1.1e-70	93.7
AXO12022.1\|1399014_1399338_+	hypothetical protein	A0A1W6JHU2	Lactococcus_phage	1.4e-14	40.8
AXO12023.1\|1399393_1399771_-	HicB family protein	I3NLB2	Bifidobacterium_phage	1.5e-15	41.3
AXO12024.1\|1399823_1399964_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
AXO12025.1\|1400120_1400438_+	HNH endonuclease	A3F639	Streptococcus_phage	1.1e-30	69.1
AXO12026.1\|1400574_1400931_+	hypothetical protein	A0A2H4JAH7	uncultured_Caudovirales_phage	3.0e-34	61.0
AXO12027.1\|1400927_1402571_+\|terminase	terminase large subunit	A0A1S5SF58	Streptococcus_phage	4.8e-268	80.6
AXO12028.1\|1402581_1402905_+	hypothetical protein	NA	NA	NA	NA
AXO12029.1\|1402976_1404125_+\|portal	phage portal protein	A0A1S5SFG8	Streptococcus_phage	8.7e-107	53.0
AXO12030.1\|1404105_1404837_+\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	1.4e-73	61.5
AXO12031.1\|1404858_1406019_+\|capsid	phage major capsid protein	A0A1S5SFB4	Streptococcus_phage	3.6e-116	57.6
AXO12032.1\|1406022_1406316_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JAA9	uncultured_Caudovirales_phage	9.5e-10	42.5
AXO12033.1\|1406429_1406777_+\|head,tail	phage head-tail adapter protein	A3F648	Streptococcus_phage	3.7e-29	55.7
AXO12034.1\|1406780_1407173_+	hypothetical protein	A3F649	Streptococcus_phage	2.9e-54	78.9
AXO12035.1\|1407165_1407546_+	hypothetical protein	A3F650	Streptococcus_phage	1.8e-40	64.3
AXO12036.1\|1407560_1408166_+\|tail	phage tail protein	A3F651	Streptococcus_phage	1.2e-70	74.1
AXO12037.1\|1408176_1408479_+	hypothetical protein	A3F652	Streptococcus_phage	7.5e-34	69.4
AXO12038.1\|1408705_1412629_+\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	0.0e+00	64.7
AXO12039.1\|1412640_1414149_+\|tail	phage tail protein	J7KH53	Streptococcus_phage	1.5e-228	77.5
AXO12802.1\|1414160_1417967_+	CHAP domain-containing protein	J7KBT9	Streptococcus_phage	0.0e+00	79.5
AXO12040.1\|1417977_1420002_+	hypothetical protein	J7KC14	Streptococcus_phage	9.4e-165	49.6
AXO12041.1\|1420016_1420343_+	DUF1366 domain-containing protein	J7KDI9	Streptococcus_phage	1.3e-31	68.2
AXO12042.1\|1420317_1420530_+	hypothetical protein	J7KDP6	Streptococcus_phage	2.1e-14	60.0
AXO12043.1\|1420542_1420845_+	hypothetical protein	X2KT07	Streptococcus_phage	2.2e-25	59.6
AXO12044.1\|1420846_1421101_+\|holin	phage holin	J7KDR1	Streptococcus_phage	1.6e-37	96.4
AXO12045.1\|1421226_1422558_+	lysin	Q8HA43	Streptococcus_phage	3.1e-265	99.8
AXO12046.1\|1422692_1423589_+	ATP-binding protein	J7KDG8	Streptococcus_phage	1.8e-168	100.0
AXO12047.1\|1423582_1423882_+	DUF4325 domain-containing protein	J7KJ12	Streptococcus_phage	3.8e-46	100.0
AXO12048.1\|1423991_1424192_+	CsbD family protein	J7KJ36	Streptococcus_phage	2.9e-26	100.0
AXO12049.1\|1424232_1424403_-	hypothetical protein	A0A286QNA2	Streptococcus_phage	1.1e-07	63.8
AXO12050.1\|1424818_1424998_+	Paratox	J7KIW4	Streptococcus_phage	2.1e-20	86.2
AXO12051.1\|1425097_1425712_-\|integrase	site-specific integrase	F8HGP4	Streptococcus_phage	9.2e-55	60.7
AXO12052.1\|1425714_1425981_-\|integrase	integrase	Q77YW7	Streptococcus_phage	9.2e-20	65.2
AXO12053.1\|1425980_1426385_+	hypothetical protein	NA	NA	NA	NA
AXO12054.1\|1426546_1426747_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AXO12055.1\|1426771_1427029_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	5.8e-11	43.5
AXO12056.1\|1427154_1427364_+	hypothetical protein	A0A0C5AEA5	Paenibacillus_phage	1.4e-15	55.4
AXO12057.1\|1427536_1427698_-	NINE protein	NA	NA	NA	NA
AXO12058.1\|1428439_1429717_+	ABC transporter permease	NA	NA	NA	NA
AXO12059.1\|1429726_1430383_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-22	31.8
AXO12060.1\|1430382_1431759_+	ABC transporter permease	NA	NA	NA	NA
AXO12061.1\|1431855_1432509_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.1e-25	33.6
AXO12062.1\|1432505_1433825_+	sensor histidine kinase	W8CYF6	Bacillus_phage	2.2e-05	25.9
AXO12063.1\|1434701_1434902_+	CsbD family protein	J7KJ36	Streptococcus_phage	8.4e-26	97.0
AXO12064.1\|1434943_1435132_+	Paratox	J7KIW4	Streptococcus_phage	3.3e-16	78.2
AXO12065.1\|1435556_1436762_+	rod shape-determining protein RodA	NA	NA	NA	NA
AXO12066.1\|1436880_1437441_+	hydrolase	NA	NA	NA	NA
AXO12067.1\|1437441_1439394_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.5e-143	44.8
AXO12068.1\|1439487_1441212_+	septation ring formation regulator EzrA	NA	NA	NA	NA
AXO12069.1\|1441305_1441947_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
AXO12070.1\|1441967_1442453_-	NUDIX domain-containing protein	NA	NA	NA	NA
AXO12071.1\|1442465_1442921_-	DUF1694 domain-containing protein	W6LLD2	Streptococcus_phage	7.8e-27	48.9
AXO12072.1\|1443076_1444210_-\|transposase	ISAs1 family transposase IS1548	NA	NA	NA	NA
AXO12073.1\|1444444_1445752_+	enolase	A0A1X9I5Z8	Streptococcus_phage	1.5e-235	95.4
AXO12074.1\|1445859_1446924_-	endonuclease	NA	NA	NA	NA
AXO12075.1\|1447152_1448436_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AXO12076.1\|1448428_1448941_+	shikimate kinase	NA	NA	NA	NA
AXO12077.1\|1448997_1450371_+	LytR family transcriptional regulator	NA	NA	NA	NA
AXO12078.1\|1450471_1451827_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	D0R096	Streptococcus_phage	3.9e-191	73.4
AXO12079.1\|1453353_1453884_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXO12080.1\|1454053_1459345_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
AXO12081.1\|1460294_1461100_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXO12082.1\|1463342_1463912_+	hypothetical protein	A0A1B0RXB3	Streptococcus_phage	2.5e-86	81.0
1461079:1461938	attR	NA	NA	NA	NA
AXO12083.1\|1463950_1465906_-	DNA polymerase I	D0R0B0	Streptococcus_phage	0.0e+00	84.3
AXO12084.1\|1466136_1466700_-	DUF2815 family protein	A0A1B0RXA9	Streptococcus_phage	1.9e-91	93.9
AXO12085.1\|1466704_1467826_-	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	8.0e-198	88.2
AXO12086.1\|1467818_1468142_-	hypothetical protein	A0A1B0RXB7	Streptococcus_phage	2.0e-32	71.2
AXO12087.1\|1468538_1470821_+	DNA primase	A0A1B0RXC5	Streptococcus_phage	0.0e+00	79.6
AXO12088.1\|1471104_1471386_+	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	7.9e-38	79.6
AXO12089.1\|1471366_1472743_+	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	1.8e-231	86.2
AXO12090.1\|1472735_1473233_+	hypothetical protein	A0A1B0RXB9	Streptococcus_phage	1.7e-62	74.4
AXO12091.1\|1473625_1474663_+	methionine adenosyltransferase	E4ZFL0	Streptococcus_phage	1.9e-169	84.6
AXO12092.1\|1474664_1475030_+	HNH endonuclease	A0A1B0RXJ3	Streptococcus_phage	6.6e-61	86.0
AXO12093.1\|1475318_1475774_+	helix-turn-helix domain-containing protein	M1Q209	Streptococcus_phage	2.1e-43	51.0
AXO12094.1\|1475745_1477002_+	DNA modification methylase	A0A1B0RXJ0	Streptococcus_phage	1.8e-222	88.7
AXO12095.1\|1478313_1478568_+	hypothetical protein	NA	NA	NA	NA
AXO12096.1\|1478578_1479028_+	DUF4314 domain-containing protein	A0A1X9I6A3	Streptococcus_phage	6.1e-16	62.1
AXO12097.1\|1479079_1479553_+\|terminase	phage terminase small subunit P27 family	A0A1X9I6K0	Streptococcus_phage	2.3e-85	97.5
AXO12098.1\|1479549_1481142_+\|terminase	terminase large subunit	A0A1X9I6B3	Streptococcus_phage	2.8e-305	95.1
AXO12099.1\|1481212_1481470_+	type II toxin-antitoxin system Phd/YefM family antitoxin	E4ZFM1	Streptococcus_phage	1.2e-35	95.3
AXO12100.1\|1481466_1481838_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1X9I6C0	Streptococcus_phage	1.2e-57	89.4
AXO12101.1\|1481863_1482190_+	hypothetical protein	NA	NA	NA	NA
AXO12102.1\|1482257_1483547_+\|portal	phage portal protein	A0A1B0RXD8	Streptococcus_phage	2.2e-228	90.6
AXO12103.1\|1483539_1484238_+\|protease	Clp protease ClpP	A0A1B0RXE1	Streptococcus_phage	1.0e-105	83.2
AXO12104.1\|1484251_1485460_+\|capsid	phage major capsid protein	E4ZFM5	Streptococcus_phage	1.8e-211	91.0
AXO12105.1\|1485456_1485714_+\|head,tail	phage gp6-like head-tail connector protein	D0R0D7	Streptococcus_phage	1.5e-27	74.1
AXO12106.1\|1485713_1486052_+\|head,tail	head-tail adaptor protein	A0A1B0RXJ6	Streptococcus_phage	6.2e-37	66.1
AXO12107.1\|1486044_1486413_+	HK97 gp10 family phage protein	Q6DMT7	Streptococcus_phage	1.1e-34	63.8
AXO12108.1\|1486421_1486748_+	hypothetical protein	M1Q1Z4	Streptococcus_phage	1.6e-37	67.6
AXO12109.1\|1486750_1487320_+\|tail	phage tail protein	E4ZFM9	Streptococcus_phage	1.6e-98	95.7
AXO12110.1\|1487331_1487751_+	hypothetical protein	E4ZFN0	Streptococcus_phage	1.3e-55	74.8
AXO12111.1\|1488045_1491165_+\|tail	phage tail tape measure protein	Q6DMT2	Streptococcus_phage	3.0e-242	75.5
AXO12112.1\|1491161_1491887_+\|tail	phage tail protein	Q6DMT1	Streptococcus_phage	8.0e-82	57.9
AXO12113.1\|1491886_1494802_+	carbamoylsarcosine amidase	Q6DMT0	Streptococcus_phage	0.0e+00	65.2
AXO12114.1\|1495949_1496054_-	exfoliative toxin	NA	NA	NA	NA
AXO12115.1\|1496037_1497171_-\|transposase	ISAs1 family transposase IS1548	NA	NA	NA	NA
AXO12116.1\|1498013_1498412_+\|holin	holin	D0R0E9	Streptococcus_phage	5.1e-38	60.8
AXO12117.1\|1499955_1500063_+\|holin	putative holin-like toxin	NA	NA	NA	NA
AXO12118.1\|1500600_1501842_+	recombinase family protein	A0A1X9I6J1	Streptococcus_phage	1.9e-171	70.0
AXO12119.1\|1501786_1503091_+	recombinase family protein	E4ZFN9	Streptococcus_phage	4.9e-199	80.0
AXO12120.1\|1503173_1504244_+	hypothetical protein	NA	NA	NA	NA
AXO12121.1\|1504265_1505564_+	hypothetical protein	NA	NA	NA	NA
AXO12803.1\|1505790_1506003_+	hypothetical protein	NA	NA	NA	NA
AXO12122.1\|1506120_1506858_+	acid phosphatase AphA	NA	NA	NA	NA
AXO12123.1\|1507178_1507697_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
AXO12124.1\|1508533_1508863_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
AXO12125.1\|1508982_1510127_-\|transposase	IS3-like element ISSag5 family transposase	Q8W6R2	Burkholderia_virus	2.4e-16	26.1

DBSCAN-SWA_6

1797906 : 1827070

Streptococcus_phage(81.82%)

integrase

attL 1793966:1794025|attR 1832617:1833932

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1793966:1794025	attL	NA	NA	NA	NA
AXO12384.1\|1797906_1800699_+	cation-transporting P-type ATPase	M1HK51	Paramecium_bursaria_Chlorella_virus	7.1e-78	29.9
AXO12385.1\|1800698_1801802_+	DUF2974 domain-containing protein	NA	NA	NA	NA
AXO12386.1\|1801922_1802561_-	antibiotic acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.9e-19	43.4
AXO12387.1\|1803271_1803883_+	TVP38/TMEM64 family protein	M1Q152	Streptococcus_phage	2.7e-54	54.9
AXO12388.1\|1804056_1805274_-\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
AXO12389.1\|1805355_1805559_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
AXO12390.1\|1805542_1805794_+	hypothetical protein	NA	NA	NA	NA
AXO12391.1\|1806019_1806250_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
AXO12392.1\|1806246_1806669_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
AXO12810.1\|1806897_1806969_-	hypothetical protein	NA	NA	NA	NA
AXO12393.1\|1807173_1807527_+	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.3e-58	99.1
AXO12394.1\|1807586_1807772_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.9e-17	67.9
AXO12395.1\|1807872_1809792_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	100.0
AXO12396.1\|1809807_1809894_-	tetracycline resistance protein	NA	NA	NA	NA
AXO12397.1\|1810168_1811101_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-171	100.0
AXO12398.1\|1811097_1812099_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
AXO12399.1\|1814275_1816723_-	ATP/GTP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	99.9
AXO12400.1\|1816706_1817213_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
AXO12401.1\|1817187_1817685_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
AXO12402.1\|1817801_1818023_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
AXO12403.1\|1818065_1819271_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
AXO12404.1\|1819293_1819446_-	conjugal transfer protein	NA	NA	NA	NA
AXO12405.1\|1819448_1820834_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
AXO12406.1\|1820862_1821249_-	DUF961 domain-containing protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
AXO12407.1\|1821264_1821579_-	DUF961 domain-containing protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
AXO12408.1\|1821601_1821721_-	hypothetical protein	NA	NA	NA	NA
AXO12409.1\|1821959_1822742_-	ABC transporter (permease)	NA	NA	NA	NA
AXO12410.1\|1822753_1823452_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-19	26.6
AXO12411.1\|1823452_1823821_-	GntR family transcriptional regulator	NA	NA	NA	NA
AXO12412.1\|1823965_1827070_+	DNA polymerase III subunit alpha	A0A0K1Y8J9	Streptomyces_phage	1.1e-114	28.8
1832617:1833932	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2046590 : 2103087

Indivirus(12.5%)

transposase,tRNA,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO12626.1\|2046590_2047301_-\|protease	Zn-dependent protease	NA	NA	NA	NA
AXO12627.1\|2047390_2048179_-	esterase family protein	NA	NA	NA	NA
AXO12628.1\|2048235_2049897_-	ribonuclease J	NA	NA	NA	NA
AXO12629.1\|2050252_2051386_-\|transposase	ISAs1 family transposase IS1548	NA	NA	NA	NA
AXO12630.1\|2051520_2052282_-	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	4.1e-12	29.3
AXO12631.1\|2052281_2053145_-	ABC transporter permease	NA	NA	NA	NA
AXO12632.1\|2053157_2054162_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXO12633.1\|2054519_2056175_+	fibronectin/fibrinogen-binding protein	A0A1J0F9J4	Only_Syngen_Nebraska_virus	2.3e-07	41.0
AXO12634.1\|2056228_2056948_-	acetolactate decarboxylase	NA	NA	NA	NA
AXO12635.1\|2056961_2058644_-	acetolactate synthase AlsS	NA	NA	NA	NA
AXO12636.1\|2058753_2059980_-	tetratricopeptide repeat protein	NA	NA	NA	NA
AXO12637.1\|2059969_2061160_-	AI-2E family transporter	NA	NA	NA	NA
AXO12638.1\|2061251_2061713_-	NUDIX domain-containing protein	NA	NA	NA	NA
AXO12639.1\|2061702_2062185_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
AXO12640.1\|2063760_2064894_+\|transposase	ISAs1 family transposase IS1548	NA	NA	NA	NA
AXO12641.1\|2066997_2068038_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	9.4e-68	43.6
AXO12642.1\|2068089_2068602_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
AXO12643.1\|2068601_2069195_-	dTDP-4-keto-6-deoxy-D-glucose epimerase	NA	NA	NA	NA
AXO12644.1\|2069194_2070064_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.5e-100	61.8
AXO12645.1\|2070122_2071226_-	FAD-binding oxidoreductase	NA	NA	NA	NA
AXO12646.1\|2071234_2072023_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
AXO12647.1\|2072012_2072696_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AXO12648.1\|2072799_2073480_-	DnaD domain protein	Q938N2	Temperate_phage	1.9e-08	31.8
AXO12649.1\|2073597_2074116_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.6e-31	44.1
AXO12650.1\|2074233_2074314_-	exfoliative toxin	NA	NA	NA	NA
AXO12651.1\|2074297_2075431_-\|transposase	ISAs1-like element IS1548 family transposase	NA	NA	NA	NA
AXO12652.1\|2078112_2078211_-	hypothetical protein	NA	NA	NA	NA
AXO12653.1\|2078280_2080479_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-72	28.9
AXO12654.1\|2080475_2081237_-	SDR family oxidoreductase	NA	NA	NA	NA
AXO12655.1\|2081238_2082168_-	ribonuclease Z	NA	NA	NA	NA
AXO12656.1\|2082209_2082857_-	cystathionine beta-lyase	NA	NA	NA	NA
AXO12657.1\|2082849_2084088_-	GTPase HflX	NA	NA	NA	NA
AXO12658.1\|2084178_2085069_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
AXO12659.1\|2085179_2085356_+	DUF3042 family protein	NA	NA	NA	NA
AXO12660.1\|2086449_2090208_-	pullulanase	NA	NA	NA	NA
AXO12661.1\|2091124_2091709_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
AXO12662.1\|2091805_2093212_-	dipeptidase PepV	NA	NA	NA	NA
AXO12663.1\|2095852_2097634_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
AXO12664.1\|2097792_2098560_+	DNA integration/recombination/inversion protein	NA	NA	NA	NA
AXO12665.1\|2098618_2099959_-	MATE family efflux transporter	NA	NA	NA	NA
AXO12666.1\|2100058_2100469_-	VOC family protein	NA	NA	NA	NA
AXO12667.1\|2100478_2100976_-\|tail	phage tail protein	NA	NA	NA	NA
AXO12668.1\|2101197_2101794_+	hypothetical protein	NA	NA	NA	NA
AXO12669.1\|2101982_2103087_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	1.4e-69	49.3

DBSCAN-SWA_8

2126145 : 2146513

Streptococcus_phage(92.31%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO12681.1\|2126145_2128275_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	0.0e+00	99.7
AXO12682.1\|2128267_2128636_-	transcriptional regulator	E4ZFI8	Streptococcus_phage	1.4e-63	100.0
AXO12683.1\|2128838_2129138_+	hypothetical protein	Q6DMX6	Streptococcus_phage	5.3e-48	96.0
AXO12684.1\|2129191_2129980_-	hypothetical protein	NA	NA	NA	NA
AXO12685.1\|2129988_2130585_+	TIGR01906 family membrane protein	NA	NA	NA	NA
AXO12686.1\|2130758_2132846_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.7e-60	29.9
AXO12687.1\|2132984_2133191_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
AXO12688.1\|2133801_2134248_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
AXO12689.1\|2134705_2135044_-	transcriptional regulator	E4ZFI8	Streptococcus_phage	1.7e-10	33.3
AXO12817.1\|2135056_2135683_-	cadmium transporter	NA	NA	NA	NA
AXO12690.1\|2135744_2137307_-	recombinase family protein	Q6DMS5	Streptococcus_phage	3.2e-213	71.7
AXO12691.1\|2137306_2138218_-	recombinase family protein	M1NSJ1	Streptococcus_phage	3.6e-156	95.8
AXO12692.1\|2138603_2140073_-	LysM peptidoglycan-binding domain-containing protein	A0A1X9I678	Streptococcus_phage	3.5e-262	92.8
AXO12693.1\|2140079_2140475_-\|holin	holin	A0A1B0RXK5	Streptococcus_phage	3.2e-45	99.2
AXO12694.1\|2140452_2140659_-	hypothetical protein	A0A1B0RXE8	Streptococcus_phage	1.5e-14	92.5
AXO12695.1\|2140692_2140920_-	hypothetical protein	NA	NA	NA	NA
AXO12696.1\|2141295_2141655_+	ArsR family transcriptional regulator	E4ZFI8	Streptococcus_phage	2.7e-22	47.3
AXO12697.1\|2141651_2143769_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.1e-235	62.7
AXO12698.1\|2144067_2144361_-	hypothetical protein	NA	NA	NA	NA
AXO12699.1\|2144471_2144702_+	CHAP domain-containing protein	NA	NA	NA	NA
AXO12700.1\|2144814_2145585_-	ABC transporter permease	NA	NA	NA	NA
AXO12701.1\|2145577_2146513_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.2e-25	31.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage