CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP031572	Enterobacter hormaechei strain S5 plasmid pQnrS1-1502262, complete sequence	0 crisprs	NA	0	0	9
CP031571	Enterobacter hormaechei strain S5 chromosome, complete genome	1 crisprs	csa3,DinG,cas14j,DEDDh,cas3,WYL	1	4	8
CP031573	Enterobacter hormaechei strain S5 plasmid pIncAC2-1502262, complete sequence	0 crisprs	DEDDh	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4957

Cronobacter_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO42990.1\|942_1332_+	plasmid stability protein	NA	NA	NA	NA
AXO42991.1\|1335_2607_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.9e-156	63.7
AXO42992.1\|2606_3035_-	peptidase	A0A1W6JNS2	Morganella_phage	1.3e-28	51.6
AXO43083.1\|3165_3423_+	DUF1472 domain-containing protein	NA	NA	NA	NA
AXO42993.1\|3400_3868_+	hypothetical protein	NA	NA	NA	NA
AXO42994.1\|4264_4957_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	5.7e-29	36.7

DBSCAN-SWA_2

8080 : 11332

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43000.1\|8080_8335_+	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	1.0e-20	64.9
AXO43085.1\|9032_9278_+	DUF905 domain-containing protein	NA	NA	NA	NA
AXO43001.1\|9346_11332_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	9.3e-32	29.1

DBSCAN-SWA_3

15952 : 16216

Klebsiella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43007.1\|15952_16216_-	XRE family transcriptional regulator	A0A248SLB9	Klebsiella_phage	2.9e-10	55.4

DBSCAN-SWA_4

51463 : 55677

Pseudomonas_phage(50.0%)

integrase

attL 43552:43567|attR 54206:54221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
43552:43567	attL	NA	NA	NA	NA
AXO43090.1\|51463_52597_-\|integrase	site-specific integrase	B5WZU7	Pseudomonas_phage	9.0e-48	43.3
AXO43033.1\|53201_54539_-	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	NA	NA	NA	NA
54206:54221	attR	NA	NA	NA	NA
AXO43034.1\|54535_55210_-	prepilin peptidase	NA	NA	NA	NA
AXO43091.1\|55194_55677_-	pilus assembly protein	A0A0A8J856	Ralstonia_phage	8.9e-05	36.2

DBSCAN-SWA_5

73342 : 73912

Ochrobactrum_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43052.1\|73342_73912_+	ATPase	A0A219VHB7	Ochrobactrum_phage	8.6e-23	55.8

DBSCAN-SWA_6

83834 : 84692

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43061.1\|83834_84692_+	class A beta-lactamase LAP-2	Q1MVP3	Enterobacteria_phage	2.0e-92	61.1

DBSCAN-SWA_7

89152 : 89725

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43064.1\|89152_89725_-	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4

DBSCAN-SWA_8

93256 : 96579

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43069.1\|93256_93928_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-72	57.7
AXO43070.1\|93894_94392_-	chromosome partitioning protein ParB	A0A0R6PHV6	Moraxella_phage	3.3e-18	36.0
AXO43071.1\|94557_96579_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	3.0e-38	31.3

DBSCAN-SWA_9

104624 : 106419

Macacine_betaherpesvirus(50.0%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43080.1\|104624_105404_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.5e-51	89.3
AXO43081.1\|105502_105781_-	CopG family transcriptional regulator	NA	NA	NA	NA
AXO43082.1\|105780_106419_-	chromosome partitioning protein ParA	A0A222YXS3	Escherichia_phage	5.8e-44	44.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031571

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CRISPR-Cas detection and classification

Crispr_ID: CP031571_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031571_2

2985908-2986417

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CRT
TCTAAGCTGCCTGCACGGCAGTGAAC	PILER-CR

8 spacers

The CRISPR arrays of CP031571_2

>merge|CP031571|2|2985908-2986417|CRT,PILER-CR
TGTGCCTACTGCCTGTACGGCAGTGAACGGCGCAGCGGATCGCTGAGGAATATCGGGAAATTTCTAAGCTGCCTGCACGGCAGTGAACCTTATCGATGCCAACTCGTACACCGACAGCCATTTCTAAGCTGCCTGCCCGGCAGTGAACTCAGATGGGCTACAGCATCATTAACAAGACCTGTTTCTAAGCTGCCTGCACGGCAGTGAACATGACGCCCAGGCGGTATCCGCGCGTAAGCAGTTTCTAAGCTGCCTGCACGGCAGTGAACCAGGTGCTGGCGGAGGCAAACCGCGTGGCCAAATATCTAAGCTGCCTGCACGGCAGTGAACCTGTAGCGTTTAACAGCGCCATCTTTCACTGTTTTCTAAGCTGCCTGCACGGCAGTGAACCTTACAATCTGATCGGTGGTGATTATGCTGATTTTCTAAGCTGCCTGCACGGCAGTGAACTTGACGATAGACTCTTCTTTCGTGCGGGTAGATTTCTAAGCTGCCTGCACGGCAGTGAAC

>CP031571|2|1|2985908-2986417|CRT
TGTGCCTACTGCCTGTACGGCAGTGAAC	GGCGCAGCGGATCGCTGAGGAATATCGGGAAA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CTTATCGATGCCAACTCGTACACCGACAGCCA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	TCAGATGGGCTACAGCATCATTAACAAGACCTG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	ATGACGCCCAGGCGGTATCCGCGCGTAAGCAG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CAGGTGCTGGCGGAGGCAAACCGCGTGGCCAAA
TATCTAAGCTGCCTGCACGGCAGTGAAC	CTGTAGCGTTTAACAGCGCCATCTTTCACTGT
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CTTACAATCTGATCGGTGGTGATTATGCTGAT
TTTCTAAGCTGCCTGCACGGCAGTGAAC	TTGACGATAGACTCTTCTTTCGTGCGGGTAGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC

>CP031571|2|1|2985970-2986417|PILER-CR
TCTAAGCTGCCTGCACGGCAGTGAAC	CTTATCGATGCCAACTCGTACACCGACAGCCATT
TCTAAGCTGCCTGCCCGGCAGTGAAC	TCAGATGGGCTACAGCATCATTAACAAGACCTGTT
TCTAAGCTGCCTGCACGGCAGTGAAC	ATGACGCCCAGGCGGTATCCGCGCGTAAGCAGTT
TCTAAGCTGCCTGCACGGCAGTGAAC	CAGGTGCTGGCGGAGGCAAACCGCGTGGCCAAATA
TCTAAGCTGCCTGCACGGCAGTGAAC	CTGTAGCGTTTAACAGCGCCATCTTTCACTGTTT
TCTAAGCTGCCTGCACGGCAGTGAAC	CTTACAATCTGATCGGTGGTGATTATGCTGATTT
TCTAAGCTGCCTGCACGGCAGTGAAC	TTGACGATAGACTCTTCTTTCGTGCGGGTAGATT
TCTAAGCTGCCTGCACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031571.1\|AXO41230.1\|2982971_2984624_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP031571.1\|AXO41233.1\|2986696_2988415_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
CP031571.1\|AXO41223.1\|2974060_2974381_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
CP031571.1\|AXO41236.1\|2992146_2993958_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
CP031571.1\|AXO41224.1\|2974648_2974870_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP031571.1\|AXO41228.1\|2979105_2980764_-\|DUF2813-domain-containing-protein	unknown	unknown	gnl\|CDD\|226121
CP031571.1\|AXO41237.1\|2994092_2994533_-\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
CP031571.1\|AXO41231.1\|2984634_2985603_+\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
CP031571.1\|AXO41240.1\|2998386_2998872_-\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
CP031571.1\|AXO41239.1\|2997592_2998390_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
CP031571.1\|AXO41235.1\|2989465_2990902_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
CP031571.1\|AXO41226.1\|2976877_2977993_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
CP031571.1\|AXO41232.1\|2986485_2986698_-\|hypothetical-protein	unknown	unknown	unknown
CP031571.1\|AXO41234.1\|2988453_2989455_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
CP031571.1\|AXO41238.1\|2994635_2997338_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|119365
CP031571.1\|AXO41229.1\|2981927_2982827_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
CP031571.1\|AXO42931.1\|2981055_2981751_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
CP031571.1\|AXO41227.1\|2978152_2979109_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
CP031571.1\|AXO41225.1\|2974940_2976881_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
CP031571.1\|AXO42932.1\|2990994_2992008_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528

Protein	Function_ID	Function_description	E-value
CP031571.1\|AXO41230.1\|2982971_2984624_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP031571.1\|AXO41233.1\|2986696_2988415_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
CP031571.1\|AXO41223.1\|2974060_2974381_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
CP031571.1\|AXO41236.1\|2992146_2993958_-\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	2.7565e-72
CP031571.1\|AXO41224.1\|2974648_2974870_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
CP031571.1\|AXO41226.1\|2976877_2977993_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP031571.1\|AXO41237.1\|2994092_2994533_-\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	5.32861e-87
CP031571.1\|AXO41231.1\|2984634_2985603_+\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
CP031571.1\|AXO41240.1\|2998386_2998872_-\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.13746e-29
CP031571.1\|AXO41239.1\|2997592_2998390_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.87481e-40
CP031571.1\|AXO41235.1\|2989465_2990902_+\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.68733e-140
CP031571.1\|AXO41234.1\|2988453_2989455_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
CP031571.1\|AXO41228.1\|2979105_2980764_-\|DUF2813-domain-containing-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP031571.1\|AXO41238.1\|2994635_2997338_-\|PKD-domain-containing-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	1.3015e-124
CP031571.1\|AXO41229.1\|2981927_2982827_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	9.78566e-117
CP031571.1\|AXO42931.1\|2981055_2981751_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
CP031571.1\|AXO41227.1\|2978152_2979109_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	7.21186e-129
CP031571.1\|AXO41225.1\|2974940_2976881_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP031571.1\|AXO42932.1\|2990994_2992008_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52

>CP031571.1|AXO41231.1|2984634_2985603_+|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQANVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSRELLQSVPDIANRIVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>CP031571.1|AXO41230.1|2982971_2984624_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>CP031571.1|AXO41229.1|2981927_2982827_+|lysine-exporter-LysO-family-protein
MFSGLLIILLPLILGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>CP031571.1|AXO42931.1|2981055_2981751_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>CP031571.1|AXO41228.1|2979105_2980764_-|DUF2813-domain-containing-protein
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNTPEVEVTARELDFLARELVSRPQNLTDVQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>CP031571.1|AXO41227.1|2978152_2979109_+|DUF535-domain-containing-protein
MSSIVDTPFSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLENLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>CP031571.1|AXO41226.1|2976877_2977993_-|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLEMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGATP
>CP031571.1|AXO41225.1|2974940_2976881_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP031571.1|AXO41224.1|2974648_2974870_+|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>CP031571.1|AXO41223.1|2974060_2974381_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>CP031571.1|AXO41232.1|2986485_2986698_-|hypothetical-protein
MVVRLLYVISLTSLEESRCIACSVFLKYRWFFCATRRQRAEVGAGGSGFADPFFLMMHKLLILYGWADGE
>CP031571.1|AXO41233.1|2986696_2988415_+|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQDLFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>CP031571.1|AXO41234.1|2988453_2989455_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAVLFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGSLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKAITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>CP031571.1|AXO41235.1|2989465_2990902_+|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLLKLHLPGVTCHNVDLSWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRHRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRALRALIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEQKRENN
>CP031571.1|AXO42932.1|2990994_2992008_+|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>CP031571.1|AXO41236.1|2992146_2993958_-|PKD-domain-containing-protein
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNTLTYTWRSQDGQTVTGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNAPTYYEPGAGLAWAEAWTAL
>CP031571.1|AXO41237.1|2994092_2994533_-|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>CP031571.1|AXO41238.1|2994635_2997338_-|PKD-domain-containing-protein
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLSQGVQPGKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDATPVDPEVTNHAPIASSADQNVSGPVTVTLDGSASSDPDGDAITYKWTQVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDIQVVNKAPKANQAPVLNPMEAITLESGETYALHAQAADPDGDALTYAWSVPADMHATGSDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>CP031571.1|AXO41239.1|2997592_2998390_-|prepilin-peptidase
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASNCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQVLPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIVVFMSQQFAFTF
>CP031571.1|AXO41240.1|2998386_2998872_-|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAVVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031571_2	2.7\|2986298\|32\|CP031571\|CRT	2986298-2986329	32	CP031571.1	1613752-1613783	2	0.938

1. spacer 2.7|2986298|32|CP031571|CRT matches to position: 1613752-1613783, mismatch: 2, identity: 0.938

cttacaatctgatcggtggtgattatgctgat	CRISPR spacer
cttacaatcggatcggtggggattatgctgat	Protospacer
********* ********* ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031571_2	2.1\|2985936\|32\|CP031571\|CRT	2985936-2985967	32	NC_021190	Enterobacteria phage phi80, complete genome	27393-27424	1	0.969
CP031571_2	2.1\|2985936\|32\|CP031571\|CRT	2985936-2985967	32	MN856003	Bacteriophage sp. isolate 1, complete genome	42707-42738	2	0.938
CP031571_2	2.5\|2986177\|33\|CP031571\|CRT	2986177-2986209	33	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	10371-10403	6	0.818
CP031571_2	2.5\|2986177\|33\|CP031571\|CRT	2986177-2986209	33	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	166753-166785	6	0.818
CP031571_2	2.2\|2985996\|32\|CP031571\|CRT	2985996-2986027	32	MT639639	Gordonia phage LittleFella, complete genome	45936-45967	8	0.75
CP031571_2	2.3\|2986056\|33\|CP031571\|CRT	2986056-2986088	33	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	202668-202700	9	0.727
CP031571_2	2.5\|2986177\|33\|CP031571\|CRT	2986177-2986209	33	NC_008042	Ruegeria sp. TM1040 plasmid unnamed, complete sequence	8568-8600	9	0.727
CP031571_2	2.5\|2986177\|33\|CP031571\|CRT	2986177-2986209	33	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	173360-173392	9	0.727
CP031571_2	2.5\|2986177\|33\|CP031571\|CRT	2986177-2986209	33	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	511344-511376	9	0.727
CP031571_2	2.5\|2986177\|33\|CP031571\|CRT	2986177-2986209	33	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	627596-627628	9	0.727
CP031571_2	2.5\|2986177\|33\|CP031571\|CRT	2986177-2986209	33	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	2193174-2193206	10	0.697

1. spacer 2.1|2985936|32|CP031571|CRT matches to NC_021190 (Enterobacteria phage phi80, complete genome) position: , mismatch: 1, identity: 0.969

ggcgcagcggatcgctgaggaatatcgggaaa	CRISPR spacer
ggcgcagcggctcgctgaggaatatcgggaaa	Protospacer
********** *********************

2. spacer 2.1|2985936|32|CP031571|CRT matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 2, identity: 0.938

ggcgcagcggatcgctgaggaatatcgggaaa	CRISPR spacer
ggcgcaacggctcgctgaggaatatcgggaaa	Protospacer
******.*** *********************

3. spacer 2.5|2986177|33|CP031571|CRT matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 6, identity: 0.818

caggtgc-tggcggaggcaaaccgcgtggccaaa	CRISPR spacer
-atgcgcgtggcggaggcaaaccgcttggccacg	Protospacer
 * *.** ***************** ****** .

4. spacer 2.5|2986177|33|CP031571|CRT matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 6, identity: 0.818

caggtgc-tggcggaggcaaaccgcgtggccaaa	CRISPR spacer
-atgcgcgtggcggaggcaaaccgcttggccacg	Protospacer
 * *.** ***************** ****** .

5. spacer 2.2|2985996|32|CP031571|CRT matches to MT639639 (Gordonia phage LittleFella, complete genome) position: , mismatch: 8, identity: 0.75

cttatcgatgccaactcgtacaccgacagcca	CRISPR spacer
gtgtgcgatgacaactcgtacaccgacaagaa	Protospacer
 *   ***** *****************.  *

6. spacer 2.3|2986056|33|CP031571|CRT matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 9, identity: 0.727

---tcagatgggctacagcatcattaacaagacctg	CRISPR spacer
cgcccgca---gctacagcatgatgaacaagacctt	Protospacer
   .*. *   ********** ** **********

7. spacer 2.5|2986177|33|CP031571|CRT matches to NC_008042 (Ruegeria sp. TM1040 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

caggtgctggcggaggcaaaccgcgtggccaaa	CRISPR spacer
agcgatatgccggaggcaaatcgcgtggccaca	Protospacer
 . *   ** **********.********** *

8. spacer 2.5|2986177|33|CP031571|CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.727

caggtgctggcggaggcaaaccgcgtggccaaa	CRISPR spacer
agcgatatgccggaggcaaatcgcgtggccaca	Protospacer
 . *   ** **********.********** *

9. spacer 2.5|2986177|33|CP031571|CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.727

caggtgctggcggaggcaaaccgcgtggccaaa	CRISPR spacer
agcgatatgccggaggcaaatcgcgtggccaca	Protospacer
 . *   ** **********.********** *

10. spacer 2.5|2986177|33|CP031571|CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.727

caggtgctggcggaggcaaaccgcgtggccaaa	CRISPR spacer
agcgatatgccggaggcaaatcgcgtggccaca	Protospacer
 . *   ** **********.********** *

11. spacer 2.5|2986177|33|CP031571|CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 10, identity: 0.697

caggtgctggcggaggcaaaccgcgtggccaaa	CRISPR spacer
gccgcgctgccggaggcaagccgcgtggcgcct	Protospacer
   *.**** *********.*********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

410129 : 471090

Salmonella_phage(66.0%)

head,lysis,tRNA,integrase,plate,tail,capsid,portal

attL 409883:409932|attR 464962:465011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
409883:409932	attL	NA	NA	NA	NA
AXO38951.1\|410129_411446_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	9.2e-36	30.0
AXO38952.1\|411599_412166_+	hypothetical protein	NA	NA	NA	NA
AXO38953.1\|412222_412624_+	hypothetical protein	NA	NA	NA	NA
AXO38954.1\|412862_412982_+	cell filamentation protein Fic	NA	NA	NA	NA
AXO38955.1\|412978_413125_-	hypothetical protein	NA	NA	NA	NA
AXO38956.1\|413276_414065_+	hypothetical protein	NA	NA	NA	NA
AXO38957.1\|414278_414515_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AXO38958.1\|414647_416060_+	DUF3987 domain-containing protein	NA	NA	NA	NA
AXO38959.1\|416281_416905_+	inovirus Gp2 family protein	NA	NA	NA	NA
AXO38960.1\|416977_418585_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.5e-101	41.1
AXO38961.1\|418581_419754_-	anticodon nuclease	NA	NA	NA	NA
AXO38962.1\|419750_421049_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.0e-10	23.3
AXO38963.1\|421045_421231_-	hypothetical protein	NA	NA	NA	NA
AXO38964.1\|421230_424203_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.6e-19	23.5
AXO38965.1\|424293_424464_-	hypothetical protein	NA	NA	NA	NA
AXO38966.1\|424678_425542_+	GTPase family protein	NA	NA	NA	NA
AXO38967.1\|425637_426462_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.9e-45	38.0
AXO38968.1\|426670_427384_+	DeoR family transcriptional regulator	NA	NA	NA	NA
AXO38969.1\|427674_428541_+	hypothetical protein	NA	NA	NA	NA
AXO38970.1\|428974_429433_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	2.2e-13	33.6
AXO38971.1\|429442_429661_+	hypothetical protein	NA	NA	NA	NA
AXO38972.1\|429703_430183_+	DNA repair protein RadC	NA	NA	NA	NA
AXO38973.1\|430191_430413_+	DUF987 domain-containing protein	NA	NA	NA	NA
AXO38974.1\|430430_430748_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
AXO38975.1\|430768_431110_+	toxin	NA	NA	NA	NA
AXO38976.1\|431429_432443_-\|integrase	integrase	F1BUS9	Erwinia_phage	4.8e-117	60.2
AXO38977.1\|432448_432994_-	hypothetical protein	NA	NA	NA	NA
AXO38978.1\|433019_433670_-	phage repressor protein	F1BUN8	Cronobacter_phage	1.5e-26	33.5
AXO38979.1\|433757_433994_+	regulator	NA	NA	NA	NA
AXO38980.1\|434028_434538_+	hypothetical protein	A0A1S6L008	Salmonella_phage	1.0e-83	93.5
AXO42830.1\|434545_434746_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	8.7e-31	90.9
AXO38981.1\|434709_435051_+	hypothetical protein	E5G6L5	Salmonella_phage	2.6e-51	86.7
AXO38982.1\|435118_435352_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.7e-23	79.2
AXO38983.1\|435351_435579_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.3e-34	90.7
AXO38984.1\|436429_438838_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	96.1
AXO38985.1\|438999_439188_+	hypothetical protein	A0A1S6L006	Salmonella_phage	4.6e-26	98.4
AXO38986.1\|439199_439433_+	DinI family protein	A0A1S6L014	Salmonella_phage	6.4e-33	90.9
AXO38987.1\|439570_440329_-	hypothetical protein	NA	NA	NA	NA
AXO42831.1\|440816_441791_+	hypothetical protein	A4PE73	Ralstonia_virus	5.5e-54	42.5
AXO38988.1\|441790_442129_+	DUF4325 domain-containing protein	NA	NA	NA	NA
AXO38989.1\|442173_443226_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.4e-156	79.6
AXO38990.1\|443225_444989_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	3.2e-312	87.7
AXO38991.1\|445138_445966_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	7.7e-73	56.0
AXO38992.1\|445981_447130_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.2e-133	67.6
AXO38993.1\|447133_447787_+	hypothetical protein	E5G6M7	Salmonella_phage	5.2e-56	56.1
AXO38994.1\|447885_448353_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.3e-48	58.7
AXO38995.1\|448352_448556_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AXO38996.1\|448559_448775_+	hypothetical protein	E5G6N0	Salmonella_phage	2.0e-20	66.2
AXO38997.1\|448755_449271_+	lysozyme	E5G6N1	Salmonella_phage	6.9e-72	75.3
AXO38998.1\|449267_449696_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	4.0e-57	85.0
AXO38999.1\|449625_449829_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.8e-28	91.0
AXO39000.1\|449791_450223_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.3e-68	88.1
AXO39001.1\|450215_450662_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.4e-59	79.7
AXO39002.1\|450730_451309_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.0e-104	96.4
AXO39003.1\|451305_451665_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.2e-52	88.1
AXO39004.1\|451651_452560_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.0e-143	90.4
AXO39005.1\|452552_453158_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	8.1e-112	94.0
AXO39006.1\|453154_454537_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.3e-144	72.2
AXO39007.1\|454538_454976_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	2.5e-38	55.9
AXO42832.1\|454956_455373_-\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	7.4e-16	54.7
AXO39008.1\|455375_456164_-	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	2.9e-37	54.0
AXO39009.1\|456222_456810_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-84	84.6
AXO39010.1\|457333_458506_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	9.5e-210	92.8
AXO39011.1\|458515_459031_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	7.6e-87	93.0
AXO39012.1\|459085_459388_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.7e-41	91.0
AXO39013.1\|459402_459522_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	5.7e-14	89.7
AXO39014.1\|459514_462958_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	72.2
AXO39015.1\|462957_463443_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-72	88.2
AXO39016.1\|463439_464540_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.5e-180	91.0
AXO42833.1\|464609_464828_+	DNA-binding transcriptional regulator	Q53ZE7	Salmonella_virus	1.6e-25	72.2
AXO39017.1\|465164_465671_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
464962:465011	attR	NA	NA	NA	NA
AXO39018.1\|465772_467617_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
AXO39019.1\|467766_469509_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.9e-69	36.4
AXO39020.1\|469624_469840_-	30S ribosomal protein S21	NA	NA	NA	NA
AXO39021.1\|470076_471090_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.9

DBSCAN-SWA_2

963879 : 978539

Cronobacter_phage(36.36%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO39451.1\|963879_965034_+	DUF4102 domain-containing protein	H6WRW7	Salmonella_phage	1.8e-224	98.4
AXO39452.1\|966084_966396_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.8e-35	68.0
AXO39453.1\|966392_966707_+	hypothetical protein	I6PD79	Cronobacter_phage	8.6e-17	65.0
AXO39454.1\|966703_969616_+\|tail	phage tail tape measure protein	I6PCW3	Cronobacter_phage	2.0e-152	37.9
AXO39455.1\|969690_970044_+	hypothetical protein	A0A1V0E5P9	Salmonella_phage	6.0e-59	98.3
AXO39456.1\|970100_970448_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	7.5e-38	63.5
AXO39457.1\|970444_971200_+\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	2.2e-114	76.8
AXO39458.1\|971201_971912_+	peptidase P60	K7PJX1	Enterobacterial_phage	1.7e-140	96.2
AXO42853.1\|971945_972575_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	1.6e-54	57.4
AXO39459.1\|972627_976206_+	DUF1983 domain-containing protein	K7P840	Enterobacteria_phage	0.0e+00	80.7
AXO39460.1\|978041_978539_+	hypothetical protein	K7P6I4	Enterobacteria_phage	2.5e-74	82.6

DBSCAN-SWA_3

1442345 : 1450611

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO39843.1\|1442345_1443737_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.2e-19	32.3
AXO39844.1\|1443911_1444808_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.0e-42	41.9
AXO39845.1\|1445167_1446253_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	4.4e-100	52.0
AXO39846.1\|1446252_1447152_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.0e-30	35.5
AXO39847.1\|1447204_1448083_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.9e-107	64.8
AXO39848.1\|1448086_1448647_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.4e-47	53.9
AXO39849.1\|1448643_1449564_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	7.4e-16	27.3
AXO39850.1\|1449564_1450611_+	glycosyltransferase	A0A1V0SL50	Klosneuvirus	5.3e-10	25.0

DBSCAN-SWA_4

1564804 : 1613684

Salmonella_phage(29.03%)

head,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO39940.1\|1564804_1566100_-	DUF3596 domain-containing protein	Q20GI2	Phage_258-320	2.1e-178	68.3
AXO39941.1\|1566145_1566391_-	excisionase	S4TND0	Salmonella_phage	4.6e-26	61.2
AXO39942.1\|1566399_1566600_-	hypothetical protein	G8C7S1	Escherichia_phage	2.4e-20	71.2
AXO39943.1\|1566791_1567409_-	Eac protein	A0A220NQT7	Salmonella_phage	3.0e-90	76.6
AXO39944.1\|1567418_1567658_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	3.9e-09	44.9
AXO39945.1\|1567620_1568313_-	AP2 domain-containing protein	A0A2I7R856	Vibrio_phage	2.9e-33	47.3
AXO39946.1\|1568314_1568530_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.1e-10	52.5
AXO39947.1\|1568621_1568813_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	8.3e-15	67.8
AXO39948.1\|1568809_1569517_-	hypothetical protein	A0A1W6JP46	Morganella_phage	6.3e-23	49.5
AXO39949.1\|1569513_1569732_-	hypothetical protein	NA	NA	NA	NA
AXO39950.1\|1569734_1572017_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B0V7P0	Salmonella_phage	8.7e-191	47.1
AXO39951.1\|1572174_1572603_-	regulator	M9NYX4	Enterobacteria_phage	8.9e-73	95.8
AXO39952.1\|1572611_1573094_-	hypothetical protein	G8C7S9	Escherichia_phage	1.2e-78	97.5
AXO39953.1\|1573090_1574005_-	DNA recombinase	G8C7T0	Escherichia_phage	2.6e-170	98.7
AXO39954.1\|1574014_1574299_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.2e-49	97.9
AXO39955.1\|1574371_1574581_-	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	3.7e-32	91.3
AXO42873.1\|1574732_1575011_-	antitoxin	NA	NA	NA	NA
AXO39956.1\|1575137_1575827_-	hypothetical protein	A0A2H4J4Q4	uncultured_Caudovirales_phage	2.7e-39	52.5
AXO42874.1\|1576226_1576979_-	LexA family transcriptional repressor	A0A286S2B2	Klebsiella_phage	9.2e-73	64.0
AXO39957.1\|1577020_1577254_+	transcriptional regulator	A0A0P0ZDD7	Stx2-converting_phage	2.6e-18	62.3
AXO39958.1\|1577271_1577817_+	hypothetical protein	K7P7P2	Enterobacteria_phage	6.2e-95	96.7
AXO39959.1\|1578045_1578945_+	DNA replication protein	A0A0N7C1Z7	Escherichia_phage	1.4e-80	55.0
AXO39960.1\|1578934_1580368_+	helicase DnaB	Q716D2	Shigella_phage	8.6e-229	86.2
AXO39961.1\|1580367_1580712_+	ArsR family transcriptional regulator	G8C7U7	Escherichia_phage	2.5e-54	93.8
AXO39962.1\|1580708_1580957_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXO39963.1\|1580953_1581304_+	hypothetical protein	A0A0F6N6A6	Escherichia_phage	5.8e-14	47.9
AXO42875.1\|1581584_1581980_+	ead/Ea22-like family protein	K7P6T4	Enterobacteria_phage	2.9e-17	72.6
AXO39964.1\|1581983_1582475_+	hypothetical protein	G8C7V0	Escherichia_phage	9.2e-74	92.6
AXO39965.1\|1582508_1582691_+	hypothetical protein	NA	NA	NA	NA
AXO39966.1\|1582690_1582939_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	4.2e-35	91.2
AXO39967.1\|1582935_1583178_+	hypothetical protein	NA	NA	NA	NA
AXO39968.1\|1583356_1583806_+	recombination protein NinB	I6R9D0	Salmonella_phage	2.5e-33	47.2
AXO39969.1\|1583798_1583969_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.1e-17	82.1
AXO39970.1\|1583961_1584606_+	hypothetical protein	S4TSR3	Salmonella_phage	1.0e-80	72.4
AXO39971.1\|1584602_1584719_+	hypothetical protein	NA	NA	NA	NA
AXO39972.1\|1584715_1585393_+	antiterminator	I6PDF8	Cronobacter_phage	9.2e-56	51.1
AXO39973.1\|1585389_1585875_+	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	7.3e-39	53.8
AXO39974.1\|1586144_1586462_+\|holin	holin	E7C9S8	Salmonella_phage	8.9e-46	86.7
AXO39975.1\|1586448_1586889_+	lysozyme	A0A0M4R365	Salmonella_phage	3.6e-53	72.5
AXO39976.1\|1586885_1587272_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	9.3e-13	39.5
AXO39977.1\|1587252_1587441_+	rz1 lytic protein	U5P461	Shigella_phage	3.2e-11	56.1
AXO39978.1\|1587535_1587742_+	hypothetical protein	NA	NA	NA	NA
AXO39979.1\|1587745_1588165_+\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	5.8e-61	90.5
AXO39980.1\|1588161_1589415_+\|terminase	PBSX family phage terminase large subunit	I6RSK1	Salmonella_phage	9.8e-213	96.4
AXO39981.1\|1589507_1589717_+	hypothetical protein	NA	NA	NA	NA
AXO39982.1\|1589789_1591139_+	DUF1073 domain-containing protein	I6R9A1	Salmonella_phage	2.1e-229	87.3
AXO39983.1\|1591098_1592025_+\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	4.5e-162	92.2
AXO42876.1\|1592142_1593351_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	9.2e-208	90.3
AXO39984.1\|1593363_1593813_+	hypothetical protein	H6WRT3	Salmonella_phage	2.5e-65	86.6
AXO39985.1\|1593830_1594907_+	hypothetical protein	Q5G8Y0	Enterobacteria_phage	1.9e-188	90.5
AXO39986.1\|1594916_1595210_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	7.7e-44	91.8
AXO39987.1\|1595272_1595674_+	hypothetical protein	A0A1V0E5R0	Salmonella_phage	9.2e-56	81.5
AXO39988.1\|1595673_1595844_+	50S ribosomal protein L13	I6R0P9	Salmonella_phage	3.8e-11	48.2
AXO39989.1\|1595847_1596084_+	hypothetical protein	NA	NA	NA	NA
AXO39990.1\|1596087_1596438_+	hypothetical protein	G0ZNE2	Cronobacter_phage	1.2e-38	67.0
AXO39991.1\|1596440_1596809_+	HK97 gp10 family phage protein	F1C5E3	Cronobacter_phage	1.6e-38	65.6
AXO39992.1\|1596805_1597189_+	hypothetical protein	F1C5E4	Cronobacter_phage	2.6e-39	62.2
AXO39993.1\|1597252_1597996_+	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	6.3e-74	85.3
AXO39994.1\|1598055_1598739_+	hypothetical protein	F1C5E8	Cronobacter_phage	1.3e-78	61.1
AXO39995.1\|1598797_1602313_+	hypothetical protein	R9TMK1	Aeromonas_phage	3.0e-235	58.7
AXO39996.1\|1602312_1602810_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.8e-88	90.9
AXO39997.1\|1602809_1603280_+	hypothetical protein	F1C5F1	Cronobacter_phage	8.2e-80	94.2
AXO39998.1\|1603242_1603659_+	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	8.9e-70	88.2
AXO39999.1\|1603645_1606123_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.5
AXO40000.1\|1606180_1607818_+	hypothetical protein	B1GS50	Salmonella_phage	6.2e-58	68.4
AXO40001.1\|1608421_1610059_-	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-86	36.4
AXO40002.1\|1610059_1610977_-	glycosyltransferase	U5P087	Shigella_phage	1.5e-162	91.8
AXO40003.1\|1610973_1611336_-	GtrA family protein	U5P0S6	Shigella_phage	2.6e-49	83.3
AXO40004.1\|1611446_1611752_+	hypothetical protein	I6PCW5	Cronobacter_phage	6.0e-15	40.6
AXO40005.1\|1611751_1613020_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	6.4e-228	91.0
AXO40006.1\|1613012_1613684_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	6.9e-80	59.9

DBSCAN-SWA_5

1681010 : 1765513

Enterobacteria_phage(31.48%)

head,tRNA,holin,tail,terminase,protease,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO40069.1\|1681010_1682744_-\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	2.0e-86	36.8
AXO40070.1\|1682982_1683543_+	VOC family protein	NA	NA	NA	NA
AXO40071.1\|1683621_1684365_+	copper homeostasis protein CutC	NA	NA	NA	NA
AXO40072.1\|1684345_1684585_+	hypothetical protein	NA	NA	NA	NA
AXO40073.1\|1684539_1685511_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AXO40074.1\|1685507_1686251_-	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A1S6L2V9	Erwinia_phage	1.8e-28	30.2
AXO40075.1\|1686291_1686687_-	hypothetical protein	NA	NA	NA	NA
AXO40076.1\|1686738_1687512_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	2.3e-58	81.1
AXO40077.1\|1687490_1688804_-	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	2.9e-223	86.5
AXO40078.1\|1688859_1689105_-	excisionase	Q8W657	Enterobacteria_phage	1.9e-35	86.8
AXO40079.1\|1689097_1689523_-	hypothetical protein	NA	NA	NA	NA
AXO40080.1\|1689525_1690269_-	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	4.6e-133	94.7
AXO40081.1\|1690314_1691142_-	SPFH/Band 7/PHB domain protein	Q8W654	Enterobacteria_phage	2.9e-112	84.7
AXO40082.1\|1691138_1691333_-	hypothetical protein	NA	NA	NA	NA
AXO40083.1\|1691332_1691740_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	2.3e-25	52.2
AXO40084.1\|1691736_1691958_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.1e-18	66.7
AXO40085.1\|1691929_1692337_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	8.0e-47	80.3
AXO40086.1\|1692329_1692554_-	hypothetical protein	NA	NA	NA	NA
AXO40087.1\|1692660_1693047_-	S24 family peptidase	F1C5A0	Cronobacter_phage	1.7e-38	60.8
AXO40088.1\|1693120_1693414_-	hypothetical protein	NA	NA	NA	NA
AXO40089.1\|1693585_1694278_-	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	4.3e-85	65.4
AXO42880.1\|1694431_1694647_+	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	2.4e-10	50.0
AXO40090.1\|1694648_1694846_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXO40091.1\|1694842_1695775_+	hypothetical protein	C5IHL2	Burkholderia_virus	2.2e-36	37.0
AXO40092.1\|1695882_1697754_+	toprim domain-containing protein	Q5G8S8	Enterobacteria_phage	1.2e-222	59.4
AXO40093.1\|1697757_1698540_+	antitermination protein	F1C595	Cronobacter_phage	8.3e-109	76.4
AXO40094.1\|1699083_1699485_+	hypothetical protein	NA	NA	NA	NA
AXO40095.1\|1699481_1699757_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	7.6e-09	41.0
AXO40096.1\|1699759_1700302_+	hypothetical protein	A0A0U2S643	Escherichia_phage	2.7e-74	70.4
AXO40097.1\|1700298_1700571_+	hypothetical protein	G8C7W1	Escherichia_phage	6.8e-18	62.5
AXO40098.1\|1700527_1700722_+	hypothetical protein	K7PM01	Enterobacterial_phage	2.6e-16	84.1
AXO40099.1\|1701059_1701587_-	hypothetical protein	NA	NA	NA	NA
AXO40100.1\|1701710_1703168_+	glycosyltransferase family 2 protein	S4TSQ9	Salmonella_phage	2.6e-257	86.2
AXO40101.1\|1703180_1703390_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
AXO40102.1\|1703336_1703600_-	DUF1883 domain-containing protein	NA	NA	NA	NA
AXO42881.1\|1703763_1704354_+	hypothetical protein	K7PGW6	Enterobacterial_phage	7.4e-94	80.1
AXO40103.1\|1704385_1704565_-	hypothetical protein	A0A192Y6A8	Salmonella_phage	3.3e-13	57.6
AXO40104.1\|1704666_1705017_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.9e-49	78.4
AXO40105.1\|1705174_1705648_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	3.8e-85	98.1
AXO40106.1\|1705647_1707384_+\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	100.0
AXO40107.1\|1707383_1708688_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	3.1e-233	93.3
AXO40108.1\|1708701_1709550_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.2e-137	91.8
AXO40109.1\|1709559_1710771_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.4e-194	86.3
AXO40110.1\|1711071_1711398_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.7e-55	97.2
AXO40111.1\|1711407_1711746_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.7e-40	73.2
AXO40112.1\|1711742_1712192_+	HK97 gp10 family phage protein	K7PH84	Enterobacterial_phage	2.5e-73	97.3
AXO40113.1\|1712188_1712536_+	DUF3168 domain-containing protein	A0A220NRP0	Escherichia_phage	5.9e-59	100.0
AXO40114.1\|1712590_1713061_+\|tail	phage tail protein	A0A220NRQ0	Escherichia_phage	4.4e-81	98.7
AXO40115.1\|1713115_1713517_+\|tail	phage tail protein	K7P7C2	Enterobacteria_phage	3.6e-68	98.5
AXO40116.1\|1713540_1713804_+	DUF4035 domain-containing protein	K7P7L5	Enterobacteria_phage	4.2e-41	97.7
AXO40117.1\|1713838_1717120_+\|tail	phage tail tape measure protein	A0A220NRN7	Escherichia_phage	0.0e+00	95.8
AXO40118.1\|1717122_1717461_+\|tail	phage tail protein	K7P7R1	Enterobacteria_phage	6.6e-63	100.0
AXO40119.1\|1717457_1718216_+\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	1.1e-147	99.6
AXO40120.1\|1718217_1718928_+	peptidase P60	K7PGV2	Enterobacterial_phage	1.9e-144	97.0
AXO40121.1\|1718960_1719308_+	hypothetical protein	Q5G8W9	Enterobacteria_phage	9.0e-07	47.3
AXO40122.1\|1719314_1719650_+	hypothetical protein	Q6UAW3	Klebsiella_phage	7.3e-22	47.7
AXO40123.1\|1719705_1720305_+\|tail	tail assembly protein	K7PM97	Enterobacterial_phage	1.1e-76	75.2
AXO40124.1\|1720358_1724186_+	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	82.4
AXO40125.1\|1724187_1725153_+	hypothetical protein	G1CSU0	Cronobacter_virus	2.2e-58	39.7
AXO40126.1\|1725215_1726517_+\|tail	phage tail protein	K7PH95	Enterobacterial_phage	3.5e-112	54.0
AXO40127.1\|1726610_1726877_-	DinI family protein	K7PKR6	Enterobacteria_phage	2.8e-40	95.5
AXO40128.1\|1727241_1727808_-	hydrolase	NA	NA	NA	NA
AXO40129.1\|1728070_1729843_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AXO40130.1\|1729844_1730288_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AXO40131.1\|1730315_1731056_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXO40132.1\|1731090_1731612_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AXO40133.1\|1731692_1732307_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AXO40134.1\|1733377_1734163_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AXO40135.1\|1734159_1734915_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-15	29.8
AXO40136.1\|1734977_1735937_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AXO40137.1\|1735952_1737272_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
AXO40138.1\|1737389_1738361_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AXO40139.1\|1738404_1739847_-	pyruvate kinase	NA	NA	NA	NA
AXO40140.1\|1739961_1740831_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AXO40141.1\|1741187_1742663_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	6.0e-76	36.2
AXO40142.1\|1742896_1744708_+	phosphogluconate dehydratase	NA	NA	NA	NA
AXO40143.1\|1744747_1745389_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA
AXO40144.1\|1745463_1746642_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AXO40145.1\|1746813_1747464_+	tellurite resistance TerB family protein	NA	NA	NA	NA
AXO40146.1\|1747539_1749615_+	oligopeptidase B	NA	NA	NA	NA
AXO40147.1\|1749596_1750259_-	exodeoxyribonuclease X	NA	NA	NA	NA
AXO40148.1\|1750283_1750934_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AXO40149.1\|1751045_1751276_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-16	61.8
AXO40150.1\|1751413_1751785_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AXO40151.1\|1751786_1752656_+	hypothetical protein	NA	NA	NA	NA
AXO40152.1\|1752672_1753011_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AXO40153.1\|1753136_1753334_-	hypothetical protein	NA	NA	NA	NA
AXO40154.1\|1753379_1754360_-	DUF535 domain-containing protein	NA	NA	NA	NA
AXO40155.1\|1754527_1755172_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	5.6e-55	49.3
AXO40156.1\|1755206_1755446_-	DUF1480 family protein	NA	NA	NA	NA
AXO40157.1\|1755552_1757016_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AXO42882.1\|1759673_1760957_-	paraquat-inducible protein A	NA	NA	NA	NA
AXO40158.1\|1761089_1761587_+	GAF domain-containing protein	NA	NA	NA	NA
AXO40159.1\|1761683_1762370_+	RNA chaperone ProQ	NA	NA	NA	NA
AXO40160.1\|1762389_1764438_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.0e-81	32.6
AXO40161.1\|1764631_1765513_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_6

2326463 : 2377339

uncultured_Caudovirales_phage(43.75%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO40624.1\|2326463_2327387_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.4e-176	99.3
AXO40625.1\|2327575_2329195_+	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
AXO40626.1\|2329271_2329748_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AXO40627.1\|2329960_2331310_-	sensor histidine kinase	NA	NA	NA	NA
AXO40628.1\|2331285_2331954_-	DNA-binding response regulator	NA	NA	NA	NA
AXO40629.1\|2332147_2333173_-	AAA family ATPase	NA	NA	NA	NA
AXO40630.1\|2334065_2334770_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.0e-139	99.6
AXO40631.1\|2336112_2336445_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AXO40632.1\|2336441_2337164_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.9e-97	73.4
AXO40633.1\|2337221_2337650_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
AXO40634.1\|2339078_2339432_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
AXO40635.1\|2339915_2341394_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
AXO40636.1\|2341412_2342240_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-51	42.3
AXO40637.1\|2342311_2343508_-	MFS transporter	NA	NA	NA	NA
AXO40638.1\|2344036_2344411_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
AXO40639.1\|2344685_2345834_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.7e-123	65.9
AXO40640.1\|2346187_2346520_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AXO40641.1\|2346651_2347209_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	8.4e-39	47.2
AXO40642.1\|2351337_2351718_+	hypothetical protein	NA	NA	NA	NA
AXO40643.1\|2351775_2352399_+	hypothetical protein	NA	NA	NA	NA
AXO40644.1\|2352444_2353425_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1
AXO40645.1\|2353463_2353586_-	ABC transporter	NA	NA	NA	NA
AXO40646.1\|2353700_2354156_+	hypothetical protein	NA	NA	NA	NA
AXO40647.1\|2354196_2354433_+	hypothetical protein	NA	NA	NA	NA
AXO40648.1\|2354458_2354752_+	hypothetical protein	NA	NA	NA	NA
AXO40649.1\|2354929_2355334_+	DNA-binding protein	NA	NA	NA	NA
AXO40650.1\|2355675_2355879_-	hypothetical protein	NA	NA	NA	NA
AXO40651.1\|2355940_2356798_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	1.8e-11	38.7
AXO40652.1\|2356813_2357122_-	hypothetical protein	NA	NA	NA	NA
AXO40653.1\|2357316_2358153_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AXO40654.1\|2358152_2358956_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
AXO40655.1\|2359062_2360192_-\|transposase	IS3-like element IS1133 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-52	41.1
AXO40656.1\|2360256_2360871_-	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
AXO40657.1\|2360996_2363882_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-190	39.9
AXO40658.1\|2364380_2364806_-	hypothetical protein	NA	NA	NA	NA
AXO40659.1\|2365058_2365874_-	HNH endonuclease	NA	NA	NA	NA
AXO40660.1\|2365886_2366297_-	hypothetical protein	NA	NA	NA	NA
AXO40661.1\|2366397_2366604_-	hypothetical protein	NA	NA	NA	NA
AXO40662.1\|2366664_2367990_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
AXO42903.1\|2367994_2368288_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXO40663.1\|2368688_2370077_-	hypothetical protein	NA	NA	NA	NA
AXO40664.1\|2370081_2370579_-	hypothetical protein	NA	NA	NA	NA
AXO40665.1\|2370781_2371438_-	hypothetical protein	NA	NA	NA	NA
AXO40666.1\|2371806_2372118_-	hypothetical protein	NA	NA	NA	NA
AXO40667.1\|2372096_2372489_-	hypothetical protein	NA	NA	NA	NA
AXO40668.1\|2373409_2374396_+	hypothetical protein	NA	NA	NA	NA
AXO40669.1\|2376334_2377339_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2682239 : 2725900

Enterobacterial_phage(40.38%)

tRNA,holin,integrase,tail,terminase,protease,portal

attL 2683194:2683208|attR 2728001:2728015

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO40947.1\|2682239_2683523_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.1e-09	28.3
2683194:2683208	attL	NA	NA	NA	NA
AXO40948.1\|2683649_2683970_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.1e-48	86.8
AXO40949.1\|2683969_2684209_-	hypothetical protein	K7P7E2	Enterobacteria_phage	6.7e-38	91.1
AXO40950.1\|2684295_2684562_+	DinI family protein	K7PKM2	Enterobacterial_phage	1.8e-36	89.8
AXO40951.1\|2684655_2685957_-\|tail	phage tail protein	K7PH95	Enterobacterial_phage	3.0e-111	53.6
AXO40952.1\|2686017_2686983_-	hypothetical protein	G1CSU0	Cronobacter_virus	5.7e-59	40.5
AXO40953.1\|2686984_2690854_-	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	82.0
AXO40954.1\|2690907_2691501_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	9.1e-84	81.2
AXO40955.1\|2691563_2691980_-	hypothetical protein	K7PLY8	Enterobacterial_phage	5.9e-21	39.9
AXO40956.1\|2692009_2692720_-	peptidase P60	K7PGV2	Enterobacterial_phage	1.7e-145	97.9
AXO40957.1\|2692721_2693477_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	1.9e-134	90.4
AXO40958.1\|2693473_2693821_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	1.5e-49	81.7
AXO40959.1\|2693826_2696346_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	0.0e+00	84.7
AXO40960.1\|2696323_2696644_-\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	5.5e-51	91.4
AXO40961.1\|2696652_2697075_-\|tail	phage minor tail protein G	K7PM17	Enterobacteria_phage	2.1e-50	77.1
AXO40962.1\|2697110_2697848_-\|tail	phage tail protein	O64327	Escherichia_phage	2.7e-117	87.3
AXO40963.1\|2697855_2698254_-\|tail	phage tail protein	Q9EYD7	Enterobacteria_phage	3.5e-47	68.2
AXO40964.1\|2698250_2698805_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	1.2e-66	81.6
AXO40965.1\|2698813_2699089_-	DNA breaking-rejoining protein	K7PH55	Enterobacterial_phage	4.9e-24	67.5
AXO42914.1\|2699081_2699408_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	1.3e-39	75.7
AXO40966.1\|2699491_2701570_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	87.2
AXO40967.1\|2701451_2702954_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.9e-271	92.8
AXO42915.1\|2702950_2703166_-	hypothetical protein	K7PMB5	Enterobacterial_phage	2.0e-28	90.1
AXO40968.1\|2703162_2705265_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	96.4
AXO40969.1\|2705264_2705753_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.5e-80	98.1
AXO42916.1\|2705985_2706507_-	DUF1983 domain-containing protein	G8C7Q4	Escherichia_phage	4.7e-52	68.7
AXO40970.1\|2707034_2707229_-	hypothetical protein	K7PM01	Enterobacterial_phage	3.7e-18	87.8
AXO42917.1\|2707185_2707455_-	hypothetical protein	G8C7W1	Escherichia_phage	1.4e-31	85.4
AXO40971.1\|2707462_2708092_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	2.3e-101	87.1
AXO40972.1\|2708091_2708370_-\|holin	phage holin family protein	G8C7V9	Escherichia_phage	1.1e-36	83.7
AXO40973.1\|2708359_2708749_-	hypothetical protein	G8C7V8	Escherichia_phage	1.1e-58	92.2
AXO40974.1\|2709473_2709629_-	DUF3927 domain-containing protein	S4TRP5	Salmonella_phage	2.2e-10	70.8
AXO40975.1\|2709625_2710051_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	6.6e-60	84.4
AXO40976.1\|2710378_2711251_+	hypothetical protein	NA	NA	NA	NA
AXO40977.1\|2711250_2711508_+	hypothetical protein	NA	NA	NA	NA
AXO40978.1\|2711504_2711915_+	hypothetical protein	NA	NA	NA	NA
AXO42918.1\|2711931_2712297_-	DUF1133 family protein	K7PGW2	Enterobacterial_phage	3.6e-59	95.0
AXO40979.1\|2712311_2713301_-	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	7.3e-179	89.4
AXO40980.1\|2713297_2713687_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	9.2e-69	96.1
AXO40981.1\|2713683_2714004_-	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	1.4e-43	77.4
AXO40982.1\|2714000_2714228_-	hypothetical protein	NA	NA	NA	NA
AXO40983.1\|2714224_2714890_-	DNA methyltransferase	I6PDF5	Cronobacter_phage	4.6e-100	80.2
AXO40984.1\|2714894_2715647_-	hypothetical protein	M1FN76	Enterobacteria_phage	9.9e-136	90.0
AXO40985.1\|2715646_2716141_-	hypothetical protein	NA	NA	NA	NA
AXO40986.1\|2716137_2717028_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	3.5e-39	83.0
AXO40987.1\|2717017_2717197_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.3e-13	69.2
AXO40988.1\|2717360_2717915_-	hypothetical protein	S5FXP0	Shigella_phage	1.6e-45	53.6
AXO40989.1\|2717937_2718153_-	cell division protein	NA	NA	NA	NA
AXO40990.1\|2718252_2718879_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.6e-46	48.8
AXO40991.1\|2719167_2719368_-	hypothetical protein	NA	NA	NA	NA
AXO40992.1\|2719771_2720092_+	hypothetical protein	K7P7N6	Enterobacteria_phage	3.6e-26	55.7
AXO42919.1\|2720140_2720554_+	hypothetical protein	K7PJS4	Enterobacterial_phage	4.7e-55	84.7
AXO40993.1\|2720553_2721381_+	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	2.4e-122	85.6
AXO40994.1\|2721377_2721818_+	hypothetical protein	G9L6B1	Escherichia_phage	4.2e-09	41.7
AXO40995.1\|2721814_2722096_+	hypothetical protein	A0A2I7R567	Vibrio_phage	1.5e-07	42.5
AXO40996.1\|2722092_2722335_+	hypothetical protein	K7PLZ3	Enterobacterial_phage	4.5e-05	47.2
AXO42920.1\|2723113_2723431_+	hypothetical protein	K7P7P8	Enterobacteria_phage	7.3e-48	92.3
AXO40997.1\|2723497_2723767_+	hypothetical protein	K7PKM4	Enterobacterial_phage	3.1e-31	75.3
AXO40998.1\|2723799_2724063_+	hypothetical protein	NA	NA	NA	NA
AXO40999.1\|2724037_2725180_+\|integrase	integrase	O21929	Phage_21	1.4e-93	49.0
AXO41000.1\|2725399_2725900_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
2728001:2728015	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3585727 : 3598249

Morganella_phage(20.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO42951.1\|3585727_3588502_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.2e-297	57.2
AXO41750.1\|3588514_3589141_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.2e-24	36.6
AXO41751.1\|3589137_3589359_-	hypothetical protein	NA	NA	NA	NA
AXO41752.1\|3589355_3589619_-\|holin	nicotinic acetylcholine receptor subunit beta	NA	NA	NA	NA
AXO42952.1\|3589615_3590350_-	host cell division inhibitor Icd-like protein	Q8SBF3	Shigella_phage	5.0e-07	35.8
AXO41753.1\|3590390_3591233_-	antA/AntB antirepressor family protein	A0A0P0ZG08	Escherichia_phage	1.3e-22	48.0
AXO41754.1\|3591246_3591681_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	8.0e-29	54.3
AXO41755.1\|3591680_3591878_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	3.0e-07	45.3
AXO41756.1\|3592093_3592813_-	hypothetical protein	NA	NA	NA	NA
AXO41757.1\|3592956_3594171_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	1.4e-131	56.5
AXO41758.1\|3594522_3595776_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.6e-96	46.1
AXO41759.1\|3595787_3596891_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-59	39.9
AXO41760.1\|3597196_3598249_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.0e-118	60.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031573

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

99676 : 113187

Salmonella_phage(40.0%)

integrase,transposase

attL 95147:95160|attR 115374:115387

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
95147:95160	attL	NA	NA	NA	NA
AXO43220.1\|99676_100681_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
AXO43221.1\|100759_103732_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
AXO43222.1\|103734_104292_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
AXO43223.1\|104329_104653_-\|transposase	transposase	NA	NA	NA	NA
AXO43224.1\|104597_105611_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AXO43289.1\|105756_106290_+	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
AXO43225.1\|106446_106794_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AXO43226.1\|106787_107627_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXO43227.1\|108031_109573_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO43228.1\|109905_110562_+	quinolone resistance pentapeptide repeat protein QnrA1	NA	NA	NA	NA
AXO43229.1\|110761_111601_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXO43230.1\|111530_111710_-	hypothetical protein	NA	NA	NA	NA
AXO43231.1\|111728_112001_+	hypothetical protein	NA	NA	NA	NA
AXO43232.1\|112182_113187_-\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
115374:115387	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031572

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031571

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP031573

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection