CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031612	Olleya aquimaris strain DAU311 chromosome, complete genome	2 crisprs	cas3,RT,WYL,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031612_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031612_1

3095045-3095181

Orphan

Consensus_repeat	Method
TTACTGTTTTAGCGAAAATTAGTCTTTTAATTATCGCTAAAATGGTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031612_1

>merge|CP031612|1|3095045-3095181|CRISPRCasFinder
TTACTGTTTTAGCGAAAATTAGTCTTTTAATTATCGCTAAAATGGTAATTGATGGTAAAGATTATAAGCCAGCTACATAATATAATGGTTACTGTTTTAGCGAAAATTAGTTTTTTAATTATCGCTAAAATGGTAAT

>CP031612|1|1|3095045-3095181|CRISPRCasFinder
TTACTGTTTTAGCGAAAATTAGTCTTTTAATTATCGCTAAAATGGTAAT	TGATGGTAAAGATTATAAGCCAGCTACATAATATAATGG
TTACTGTTTTAGCGAAAATTAGTTTTTTAATTATCGCTAAAATGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP031612.1\|AXO81471.1\|3091323_3092940_+\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
CP031612.1\|AXO81472.1\|3092957_3093845_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
CP031612.1\|AXO81476.1\|3098303_3098498_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP031612.1\|AXO81467.1\|3088114_3088525_-\|hypothetical-protein	unknown	unknown	unknown
CP031612.1\|AXO81466.1\|3087069_3088050_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|273464
CP031612.1\|AXO81475.1\|3096836_3098210_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|236518
CP031612.1\|AXO81480.1\|3102035_3102590_+\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
CP031612.1\|AXO81887.1\|3101831_3102029_+\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|376355
CP031612.1\|AXO81477.1\|3098612_3099503_+\|integrase	unknown	unknown	gnl\|CDD\|274042
CP031612.1\|AXO81479.1\|3100427_3101615_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|183708
CP031612.1\|AXO81474.1\|3095235_3096666_+\|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|372685
CP031612.1\|AXO81464.1\|3084290_3085535_-\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
CP031612.1\|AXO81478.1\|3099528_3099831_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
CP031612.1\|AXO81481.1\|3102659_3103100_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
CP031612.1\|AXO81482.1\|3103118_3103808_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
CP031612.1\|AXO81469.1\|3089974_3090202_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
CP031612.1\|AXO81465.1\|3085543_3086779_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
CP031612.1\|AXO81468.1\|3088687_3089962_+\|DUF2851-family-protein	unknown	unknown	gnl\|CDD\|378539
CP031612.1\|AXO81473.1\|3093869_3095036_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173849
CP031612.1\|AXO81470.1\|3090208_3091234_+\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|367001

Protein	Function_ID	Function_description	E-value
CP031612.1\|AXO81471.1\|3091323_3092940_+\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	3.26289e-158
CP031612.1\|AXO81472.1\|3092957_3093845_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	8.48079e-17
CP031612.1\|AXO81476.1\|3098303_3098498_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	5.96737e-08
CP031612.1\|AXO81466.1\|3087069_3088050_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|273464	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. [Amino acid biosynthesis, Serine family].	1.82725e-142
CP031612.1\|AXO81475.1\|3096836_3098210_+\|alpha-amylase	gnl\|CDD\|236518	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed.	1.6468e-162
CP031612.1\|AXO81480.1\|3102035_3102590_+\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	7.84072e-63
CP031612.1\|AXO81887.1\|3101831_3102029_+\|preprotein-translocase-subunit-SecE	gnl\|CDD\|376355	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex. SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex.	1.0516e-09
CP031612.1\|AXO81477.1\|3098612_3099503_+\|integrase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	5.81058e-111
CP031612.1\|AXO81479.1\|3100427_3101615_+\|elongation-factor-Tu	gnl\|CDD\|183708	PRK12735, PRK12735, elongation factor Tu; Reviewed.	0
CP031612.1\|AXO81474.1\|3095235_3096666_+\|carboxypeptidase-like-regulatory-domain-containing-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	3.37444e-14
CP031612.1\|AXO81464.1\|3084290_3085535_-\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
CP031612.1\|AXO81478.1\|3099528_3099831_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	1.47977e-14
CP031612.1\|AXO81481.1\|3102659_3103100_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	2.2627e-86
CP031612.1\|AXO81482.1\|3103118_3103808_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.64932e-133
CP031612.1\|AXO81469.1\|3089974_3090202_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	0.00131159
CP031612.1\|AXO81465.1\|3085543_3086779_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.3798e-45
CP031612.1\|AXO81468.1\|3088687_3089962_+\|DUF2851-family-protein	gnl\|CDD\|378539	pfam11013, DUF2851, Protein of unknown function (DUF2851). This bacterial family of proteins has no known function.	0
CP031612.1\|AXO81473.1\|3093869_3095036_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173849	cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.	2.77311e-137
CP031612.1\|AXO81470.1\|3090208_3091234_+\|potassium-channel-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	2.53567e-30

>CP031612.1|AXO81473.1|3093869_3095036_+|acyl-CoA-dehydrogenase
MGNMYFSEEHNLFRESLRDFLTKEVVPHIDKWEKTGQIERFIWKKVGDMGFFGISYPEQYGGLDLDIFYMVILLEELQKINSAGFAAAMWAHAYLAMTHLKAEGSEAIKQKYLTASIAGDMIGCLCITEPFGGSDVAGMRSTAVKKGDTYVINGSKTFITNGVYSDYLVVAAKTNPELGNKGISIFLVDRDTPGVSATKLDKLGWRASDTGEIAFDNVTIPASNLMGEINKGFAYIMQHFASERLIMGVNAHARAEFAIDYTMKYMSERTAFGKTIDRFQALRHRLADHITDVQICKTFNYTVADRLGKGEYVVKEATMSKLKSTKVADDAIYDCLQFLGGYGYMEEYPLARLLRDSRLGPIGGGTSEILREIIAKMVIDGKDYKPAT
>CP031612.1|AXO81472.1|3092957_3093845_+|helix-hairpin-helix-domain-containing-protein
MNIKSHFKFSRQQRSGIFLLLLLIISIQIFYHFVLPKLMDNNPEFNTKDSTISTFIDQIDSLKAVELEKRKPKIYPFNPNFISDHKGYALGMTNQEIDRLLAFRKQNKWINSVNQFQSVTKVSDSLLAKISPYFKFPDWVTNPKPKQNNFSQSFSNLPKTESQKLDLNSATAEQLQKVYGIGPSYSQRIIKYRHKINGFHSFIELQEVYGLTPEVIQNIKNNFTIRTPRVITKINLNTATKDQLVTIKYIDYEVAYNIIEERTLRDGFKSIDELTKVNGFPVNKIQIIKLSLRLD
>CP031612.1|AXO81471.1|3091323_3092940_+|alanine:cation-symporter-family-protein
MKKYLLSIFTLILPILTFAQSSTADQIDAAFKKYTGWFVEGIFSEIPFTDTIKIPWVLLVLIGGALFFTIYFKFINFTGFRTAIKVVQGKYEDIEKHGVDSLYGDQTPGGDVIETMKKEGADGEVSHFQALTAALSATVGLGNIAGVAVALSIGGPGATFWMIIAGLLGMASKFAECTLGVKYRDVGEDGTVYGGPMYYLTKGLKEKGAGGIGKVLAVLFAIFVVGGSFGGGNMFQANQAAAQFTKLFDLTGENAGMYFGIVMAVLVAIVIIGGIKRIASVTEKVVPFMAGIYVLAALIILFANFTLIDDAFAAIFNGAFTPLAGLGGIIGVMIQGVRRGAFSNEAGVGSAAIAHSAVRTKYPASEGIVALLEPFVDTVVICTMTALVIVITNFDGGFMEYGVEIKEGVEITATAFDSVIPHFSIVLTIAVILFAFSTMISWSYYGMQGWVFLFGKGKITDLVYKILFLFFVVVGASISLGAVIDFSDAMIFAMVVPNIIGVVMLSPIIKKELTKYMNAINKKEDAIEDGATDLVDEM
>CP031612.1|AXO81470.1|3090208_3091234_+|potassium-channel-protein
MTNPLITLYRSKIYTAISLLLLLLLVGVLGFRMMSNYSWVDALYMTVITITTVGFGEVQPLDDVAKIFTIFLILNSVVILGYALSVITEFILSKSNLEELKQKKMQKKIDALNNHIIICGYGRNGKQAATKLLAHKRPFVIIEKNKETIEKFEDDNTPFILGNANEDEILLQAGIERASTLISALPNDADNLFVVLSARQMKKNLRIISRASQETSYNKLKLAGANNVILPDRIGGDHMASLVVVPDLIEFIDNLAIVGEANINIEEVQVEKLYNPDSGIKTIKDLDLRHKTGCTVIGFKNGHGEYIVNPEAELKLVPNSKVIVLGRPEQIQKLNTIFSLD
>CP031612.1|AXO81469.1|3089974_3090202_+|PspC-domain-containing-protein
MQFLYKPIHYFQKRGYHVCQRIADRLGIRAKVVRTSFMYLTFATLGFGFALYLFLAFWMRIKDIIYTKRSSVFDL
>CP031612.1|AXO81468.1|3088687_3089962_+|DUF2851-family-protein
MQEDFLHYLWKFKKFDTQNLKTTNDETVLINSIGSHNQHSGPDFFNGQITIDNQLWAGNIEIHIKSSDWFVHNHEVDPNYDNVILHVVWEHDTEVFRKNNTLIPTIQLRDYVSVRALNNYYKLFNKNQTWINCENTIPKVDSFKVNNWLERLFFERLERKSKDIEVLLKTSNNNFEAVLFKLLAKNFGLKVNSDAFLSLANSIDFSIVRKQQNNLQSLEALFFGQANMLDKDVQEAYYINLQKDYAFLKQKFGLDNKSVIPFQFFRLRPPNFPTIRLSQLANLYHVHQNLFSKVIALDTLTDIYKLFSVSTSTFWEDHYTFDKVSKTSKKKITKSFINLLLINTIIPLKFCYAKQQGKAIDDTIIKLIEQLKPEKNSIVDKFKVLKVKSESALQSQALIQLKNNYCDKNMCLKCVIGNSILTQN
>CP031612.1|AXO81467.1|3088114_3088525_-|hypothetical-protein
MHLTKKHYLFIILIFMQISMFAQDNFDIVFGETFTLKNNTITNVGYQNEFITIELTDLIEEWWYDAPPEDKNRKYHSDIQYTLKITFDDIEKQFSFYRSEIKQDNLYTIKLDGFKIVIISDKYNNTSGSITMKVIK
>CP031612.1|AXO81466.1|3087069_3088050_+|pyridoxal-phosphate-dependent-enzyme
MQYANNILETIGNTPLVKLNKLTEELPCLVLSKYETFNPGNSVKDRMALQMIEDAEADGRLKPGGTIIEGTSGNTGMGLALAAIIKGYKCIFVMADKQSKEKVDILKAVGAEVVVCPTAVEPEDPRSYYSVSKRLSTEIENSWYVNQYDNPSNAKAHYQSTGPEIWKQTEGKITHFVVGVGTGGTISGVGKYLKEQNPDIKVWGIDTYGSVFKKYHETGIFDENEIYPYVTEGIGEDILPKNVDFDIIDGFTKVTDKDAAVYTQRLSKEEGMFLGNSAGAAIKGVLQLKEHFTKDDVVVVLFHDHGSRYVGKMFNDDWMREKGYIE
>CP031612.1|AXO81465.1|3085543_3086779_+|ABC-transporter-permease
MNFEFFIAKRIIDSKAYKSSISAPIIKIGIVAIALGIIVMMIAIATGIGLQQKIREKVIAFNGHSIIQNYDNNQSEESIRPISTNQDFYPNFSSVPGVTHIQATATKSGIIRLENDFEYVVIKGVGQDYDWQYFKEFLIEGELPNYTDGLNQDILISQYLANRLKLKLKDRINTYFLREDTTKPPRSITFNIVGIYNSGLQEMDQLYVIGDINHIKRLNKWDDDQVGRFEVFIDDYDNLETTGNAIFIAVPSTLNAKTVDREYPFIFDWIKIFDNNIYAIIGIMILVAGINMITALLVLILERTQMIGVLKALGSANTSIRKIFLYNASYLILKGLFWGNLIGLTLLFLQKYFGLFPLDPQTYHVSAVPVYINIGYIIALNIGTFVLCLLMLLIPSYIISKISPVKAIRFD
>CP031612.1|AXO81464.1|3084290_3085535_-|DUF1343-domain-containing-protein
MRFNVFKNTVLLFVMVLNSCAYKTKNNITETTAILAKAEITTDNSIDKSIIVGANQTKAYLPLLKDKRVGVVANQTSVVFKNETYTHLVDSLLDLNVTVKKVFAPEHGFRGQADAGEVVKDGIDTKTGLPIVSLYGKNKKPSVAQLQNIDIIIFDIQDVGARFYTYISSLHYVMEACAEQNKTLIVLDRPNPNGHYIDGPILEKEHTSFVGMHPIPVVHGLTIGEYAQMINGEHWLKNKVTCKLEVITIKNYNRQMLYDLPIKPSPNLPNVKAINLYPSLCFFEGTNVSAGRGTDLQFQVYGSPFLPQTSYSFTPKSNAGAKYPKHENKICHGYNLSGNKPLSKLNLSYLINAYNSTNDKDSFFIKNGFFTKLAGTKKLQEQIEAGWSEDKIKATWTSGLNDFMIKRKPYLLYN
>CP031612.1|AXO81474.1|3095235_3096666_+|carboxypeptidase-like-regulatory-domain-containing-protein
MKFLNIKPTVIIILLLFGSFSFGQTELKNKVVDFMTMMPIENASVYVQNTTIGTITNADGKFVLLVPKEFENDSIVVSSIGFKSFKTTVDQFDNDFDILLEEDVASLDEILIVAENRPKTGNDIVLRALEKLKDNLPEQQYLQKGFLRHKERNKKQFKWLVESAITLYDDSSYVSGGKDNLKINVDQVRKSYDLRDVDSLFSYSTYLKYNANVNLRPKNLRRDTIKKESLIKSIKWNDTRVNGLENLFKGKLNLVRNSKSPKALFGDNILKTHQFKLDTILVDNERKIYKIQINKSEDFVGLNTKGIYNEGYIAGGWIYIYWDNFAVKKIEYQLKAGSKAQKSRSKTLFDTQINHKLVISYTEYQDRMYPNYIYYETPKLVNVGYKPTGKINKEEEAQFNKEERFYYTVQEILFTEIIQDPDKVETALQQDWDPDIFSVKPYNKQFWDNYNTLLESEEDEKLINDLTKRSSLYKKE
>CP031612.1|AXO81475.1|3096836_3098210_+|alpha-amylase
MKKLKLIILYVSIVFTYSCSNDDVLTDSVKEKSVNNISSQRAGLKPIGSGVMMQAFYWDVPAGGNWWNTVKAKVQDWSNAGIDAIWLPPVSKAQNGPFSMGYDPFDYYDFGEYDQMGSIETRFGSKTELVSLIDSAHQSGLSVIADIVINHNSGGNSEANPYTGGSTWTDFNPLSGKFYRSATDFHPNNAHSNDSGVFGGFPDLCHNQTYVQDWLWKNSNSVAKYYRDVIGFDGWRFDYVKGFEPWVVKAWKDEVGGFSVGEYWDSNVSTLDWWTSSANASAFDFACYYKMKDAFMGNNLNALNDNMLWKQNASKAMTFVTNHDTDEIINNKILAYAYILTHEGYPTIFYKDYEDWLNKASLNNLIWIHNNLASGSTSILHVDNDEYIAKRNGNNSSGLIVYINNSDTWQERWVETNWSSITIKDYTGHSSWQPVTQSGKWVKIQAPPKSYSVWSTL
>CP031612.1|AXO81476.1|3098303_3098498_+|30S-ribosomal-protein-S21
MLVIPIKQGENIERALKRYKRKFDKTGTRRALQGRKQFLKPSVQNRAKVQKAQYVQLLRDQEAV
>CP031612.1|AXO81477.1|3098612_3099503_+|integrase
MLINAFIDYLLLEKKYSKLTVNAYNKDIQSFLLFLEEQDALNSISEVNYAQIRTWIINLVESGLTNRSINRKVSALNSFYKFLLKIEEVKVNPLSKHKALKTSKKLQIPFSEKEIETVLDKINLASGFEGLRNKLIIELFYSTGIRRIELINIKLSDVDLENKTIKILGKRNKERLIPLLNSVINSIQKYLEVRKKLELIDDDQYLFLTKKGVKIYETLVYRIINDYFSIASSKVKKSPHILRHSFATHLLNQGAELNAVKELLGHSSLAATQVYTHNSIEQLKKVYAKSHPRSKK
>CP031612.1|AXO81478.1|3099528_3099831_+|ribosome-associated-translation-inhibitor-RaiA
MKVNTQAINFNAEPQLLEFIQKKMNKLELYYDKVIQSEVYLKVEKRSNKLNKIFEAKINIPGDSLVVKKQCKSFEEGTDIAIASLQRQLKKRKEKIRENF
>CP031612.1|AXO81479.1|3100427_3101615_+|elongation-factor-Tu
MAKATFDRSKPHLNIGTIGHVDHGKTTLTAAITKVLADAGLSEARDFDTIDNAPEEKERGITINTSHVEYQTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMPQTREHILLGRQVGIPRIVVFLNKVDMVDDEELLELVDMEVRELLSFYEYDGDNGPVVSGSALGALNGEQKWVDTVMELMAAVDAWIEEPVRDMDKPFLMPIEDVFSITGRGTVATGRIETGVANTGDPVEIIGMGAEKLTSTITGIEMFRQILDRGEAGDNAGILLRGIEKSQISRGMVITKPGSVTPHAKFKAEVYILKKEEGGRHTPFHNNYRPQFYVRTTDVTGNIALPDGVEMVMPGDNLTITVELINTIAMNVGLRFAIREGGRTVGAGQVTEILD
>CP031612.1|AXO81887.1|3101831_3102029_+|preprotein-translocase-subunit-SecE
MAGIVNYIKESFGELKNNVTWTPWSEAQSLTILVAVFSIIFSLAIWGIDTVFSKVISLYFNLITG
>CP031612.1|AXO81480.1|3102035_3102590_+|transcription-termination/antitermination-factor-NusG
MAEVGEKKWYVVRAVSGQENKIKTYIENEIARLGMQDYVEQVLVPTENVVQIRNGKKINKEKVYFSGYIMIKANLTGEVPHIIRSITNVIGFLGATKGGDPLPLRQSEVNRMLGKVDELSVDADVNVAIPYTKGETVKVIDGPFNGFDGTIENINEEKRKLEVMVKIFGRKTPLELSYMQVEKI
>CP031612.1|AXO81481.1|3102659_3103100_+|50S-ribosomal-protein-L11
MAKELGKVVKLQVRGGAANPSPPVGPALGAAGVNIMEFCKQFNARTQDKAGKVLPVVISVYKDKSFDFVIKTPPAAVQLLEAAKVKKGSGEPHVKKVAKVSWDQIKTIAEDKMVDLNAFTIDSAMKMIAGTARSMGITVKGGDAPN
>CP031612.1|AXO81482.1|3103118_3103808_+|50S-ribosomal-protein-L1
MARLTRKQKEAVAKIEKDKVYSLQDASALVKEITNTKFDASVDLAIRLGVDPRKANQMVRGVVSLPHGTGKDTKVLALVTPDKEAEAKEAGADYVGLDEYLDKIKSGWTDVDVIITMPSVMGKLGPLGRVLGPRGLMPNPKTGTVTMDVAKAVTEVKAGKIDFKVDKTGIVHASIGKASFSADKIQDNANELLTTIMKLKPTTAKGVYVKSIFMSSTMSPSIAVDTKIG

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Crispr_ID: CP031612_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031612_2

3200822-3200916

Orphan

Consensus_repeat	Method
GAAAATCTGTTAGAGGATTTTCAAATACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031612_2

>merge|CP031612|2|3200822-3200916|CRISPRCasFinder
GAAAATCTGTTAGAGGATTTTCAAATACGTCTGCTTTTTTTGGGAGAAGCCAAGAAACAGTAATTGGAAAATCTATTAGAGGATTTTCAAATACG

>CP031612|2|2|3200822-3200916|CRISPRCasFinder
GAAAATCTGTTAGAGGATTTTCAAATACG	TCTGCTTTTTTTGGGAGAAGCCAAGAAACAGTAATTG
GAAAATCTATTAGAGGATTTTCAAATACG

Protein	Signature genes	Signature genes Name	Protein_function
CP031612.1\|AXO81553.1\|3207684_3208878_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|227325
CP031612.1\|AXO81547.1\|3199513_3199939_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375774
CP031612.1\|AXO81891.1\|3193807_3193858_+\|hypothetical-protein	unknown	unknown	unknown
CP031612.1\|AXO81548.1\|3200044_3200818_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP031612.1\|AXO81554.1\|3210796_3212068_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
CP031612.1\|AXO81543.1\|3196835_3197411_+\|lipopolysaccharide-kinase	unknown	unknown	unknown
CP031612.1\|AXO81551.1\|3204074_3205094_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|377196
CP031612.1\|AXO81893.1\|3208887_3210630_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372475
CP031612.1\|AXO81546.1\|3198814_3199408_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
CP031612.1\|AXO81549.1\|3201342_3203244_-\|DUF349-domain-containing-protein	unknown	unknown	gnl\|CDD\|377186
CP031612.1\|AXO81555.1\|3212070_3212538_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|133478
CP031612.1\|AXO81542.1\|3195437_3196517_-\|lipopolysaccharide-heptosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223928
CP031612.1\|AXO81552.1\|3205094_3206108_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|377196
CP031612.1\|AXO81540.1\|3193837_3194575_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
CP031612.1\|AXO81556.1\|3212633_3214853_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
CP031612.1\|AXO81545.1\|3198396_3198807_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
CP031612.1\|AXO81550.1\|3203344_3204082_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
CP031612.1\|AXO81544.1\|3197478_3198294_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
CP031612.1\|AXO81541.1\|3194616_3195441_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133042
CP031612.1\|AXO81892.1\|3206160_3207549_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
CP031612.1\|AXO81547.1\|3199513_3199939_+\|hypothetical-protein	gnl\|CDD\|375774	pfam18347, DUF5606, Domain of unknown function (DUF5606). This is a domain of unknown function found at the N-terminal region of bacterial proteins.	3.99594e-23
CP031612.1\|AXO81548.1\|3200044_3200818_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.92032e-145
CP031612.1\|AXO81554.1\|3210796_3212068_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
CP031612.1\|AXO81550.1\|3203344_3204082_-\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	1.04637e-69
CP031612.1\|AXO81551.1\|3204074_3205094_-\|DUF368-domain-containing-protein	gnl\|CDD\|377196	pfam04018, DUF368, Domain of unknown function (DUF368). Predicted transmembrane domain of unknown function. Family members have between 6 and 9 predicted transmembrane segments.	1.5593e-90
CP031612.1\|AXO81893.1\|3208887_3210630_-\|hypothetical-protein	gnl\|CDD\|372475	pfam13100, OstA_2, OstA-like protein. This is a family of OstA-like proteins that are related to pfam03968.	2.24327e-42
CP031612.1\|AXO81546.1\|3198814_3199408_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.22098e-76
CP031612.1\|AXO81549.1\|3201342_3203244_-\|DUF349-domain-containing-protein	gnl\|CDD\|377186	pfam03993, DUF349, Domain of Unknown Function (DUF349). This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.	5.83362e-13
CP031612.1\|AXO81555.1\|3212070_3212538_-\|transcriptional-repressor	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	1.73528e-32
CP031612.1\|AXO81542.1\|3195437_3196517_-\|lipopolysaccharide-heptosyltransferase-family-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	2.41876e-33
CP031612.1\|AXO81552.1\|3205094_3206108_-\|DUF368-domain-containing-protein	gnl\|CDD\|377196	pfam04018, DUF368, Domain of unknown function (DUF368). Predicted transmembrane domain of unknown function. Family members have between 6 and 9 predicted transmembrane segments.	7.81627e-115
CP031612.1\|AXO81540.1\|3193837_3194575_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	4.37628e-75
CP031612.1\|AXO81556.1\|3212633_3214853_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
CP031612.1\|AXO81545.1\|3198396_3198807_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	4.1009e-45
CP031612.1\|AXO81553.1\|3207684_3208878_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|227325	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism].	4.9025e-127
CP031612.1\|AXO81544.1\|3197478_3198294_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	7.35037e-160
CP031612.1\|AXO81541.1\|3194616_3195441_+\|glycosyltransferase	gnl\|CDD\|133042	cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix.	3.19523e-79
CP031612.1\|AXO81892.1\|3206160_3207549_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.10338e-11

>CP031612.1|AXO81548.1|3200044_3200818_+|nucleoside-triphosphate-pyrophosphohydrolase
MNSRADQLKAFDRLLTIMDELRAQCPWDKKQTMETLRHLTIEETYELGDAILNNDLEEVKKEIGDLMLHMVFYAKIGSEKNAFDIADVCNSICEKLIHRHPHIYGDVKVENEEDVKRNWENLKLKEGKTSVLEGVPNSLPALVKASRIQEKVAGVGFDWEKPEQVWEKVEEELNEFKVEVDKGDADAMEDEFGDVLFSMVNYARFLNISPENALERTNKKFKKRFQYLEAQAKAINKELKDMTLGEMDVFWEEAKKQ
>CP031612.1|AXO81547.1|3199513_3199939_+|hypothetical-protein
MALDKVLAIAGKPGLYKLVTQTRGGFIAESLIDNRRMSVGIQQNVSILSEIAIYTLSEEVPLKDVFNKIKDKENGAETSISHKESKDKLEEYFFDVLPDYDEDRVYASDIKKVIQWYNMLHKNDMLNFEEADKTAATDEEE
>CP031612.1|AXO81546.1|3198814_3199408_+|peptide-deformylase
MILPIVAYGDPVLKRKAKDIPEDYPKLKELIANMYETMYGSFGVGLAAPQIGLSIRLFIVDATPFADDEDNLDADQIKFLKNFKHTFINPVILEETGDEWVFNEGCLSIPDVREDVFRKPNIKIEYYDEDFNKQTMELDGLAARVFQHEYDHIEGILFTDHLSALKKRLIKGKLTNISKGKINVDYRMKFPLMKKKR
>CP031612.1|AXO81545.1|3198396_3198807_+|Holliday-junction-resolvase-RuvX
MARILAIDYGKVRTGLAVTDELQIIASGLTTVNTKELLSYLKGYLGKEQVELFLVGEPKQMNNTPSESEALIIPFLVKLEKAFPNVPIKRVDERFTSKMATQTLIDSGLKKKQRQNKALLDEVSATIILQSYLYNQ
>CP031612.1|AXO81544.1|3197478_3198294_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MTELQKTIESAWDNRELLTETKTIEAIREVVNLLDLGKLRVAEPTNDGWQVNEWVKKAVVLYFPIQKMETLEAGIFEYHDKIPLKTGYKEKGIRVVPNAVARHGAYISAGTILMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQASPVIIEDGAFIGSRCIVVEGVHVEKEAVLGANVVLTMSTKIIDVTGDEPVEMKGRVPARSVVIPGSYTKTFAAGEFQVPCALIIGKRKESTNKKTSLNDALREYDVAV
>CP031612.1|AXO81543.1|3196835_3197411_+|lipopolysaccharide-kinase
MYKYIRPSKAKRSFEYANKLINCSISTPFPIAYIENSTVSGLKTSYYISKHIDYDFEFRELIHNPSFPEREIILQQFADFTFKLHQNNINFLDHSPGNTLITKDNDGYQFYLIDLNRMRFETMTFDKRMHNFRRLWLSKTMIKVLAETYAKLYNKSYQDTHDLMLKHSRAFQLKINSKKLRRSNRKMQFKK
>CP031612.1|AXO81542.1|3195437_3196517_-|lipopolysaccharide-heptosyltransferase-family-protein
MKKILVIQNKRIGDVLIASVIAQNMKTIYPDSQIDYLVYDYTTGVINNHPAIDNIIAVNEKELKHFMVMKRLIKRIKKTNYDVIFDPYTKLQSRLICYFSGADMRIGFQKRGKNPWFKFYTHTVPLLEEKTHISGKAIQDRVNMFNSFFKLPEDKIDYQPHIVLTESEKQYDALDKYSKPAIMLGVLGSTPQKSMPYQYIVSVIDYITSNYDINVLFNYAPDQKDDALNIYNQCQNKDNIIIDLYEDSIRGFITLMNKCELLVGNEGGVVHIAKALDKPTFTIFSPYVLKEHWASFEDGKLHTSVHLLEEKPNLFDEFSVEQRRKIEENPHELYRMLTPEMILTKLVPFLDLHLKAFKN
>CP031612.1|AXO81541.1|3194616_3195441_+|glycosyltransferase
MMKIDTSIIISTYNSPEWLAKVLYGYNNQTYRNFEIVIADDGSKQETIDLIKTIQEEVFYPIIHVWHEDNGFQKSEILNKSITQCTSEYIIMSDGDCIPRHDFVEVHVKEREIGYFLSGGYFMLPMDISHAITKEDIYKANCFNLKWLKKNGLKSSFKNNKLTAKGLKSKVLNAITPTNASWNGHNASGWKKDIVAVNGLDERMQYGGQDRELGERLMNLGIQSKQIRYSAICIHLDHKRGYKNEASIAKNRAIREVTKNEKKAWTDYGIVKKA
>CP031612.1|AXO81540.1|3193837_3194575_-|glycosyltransferase-family-2-protein
MDAITVIIPTYNEEAYLEQAIQSVGFASQIIVVDSNSTDNTVAIAKKMGCEVYLRAFDNFSNQKNHALQFAKGDWILFVDADERIPYALQQEIFEAIKSNKHAGYKLNFPHYYMNRFLYHHSDNVTRLVKRNNCKFEGLVHEKLIIDGTIGQLKNPVLHFTYKGLLHYISKKDSYAWFQAEQMLKKGKKATYFHLAFKPFYRFFSSYILRRGFMDGIPGLTVASVNAYGVFSRYVKLILLQKRIR
>CP031612.1|AXO81891.1|3193807_3193858_+|hypothetical-protein
MVLTVTVKLYLSNPFL
>CP031612.1|AXO81549.1|3201342_3203244_-|DUF349-domain-containing-protein
MSELDNLQNADGTEENIKNVQPETPQETTSVTEENDEVLNEIDDSNAEDAEDEGNSERHNIEDKDYESLNLEQLVIEIERLVKNEKVQAIKKHVDAIKTEFDKQFSQLLDEKKEEFLSNGGNEIDFRYNSPLQRSFKDSYKDFRQRLNAHYKNIEQNHKQNLTNRLEIIEAIKALTEDAEDSMNTKYKKFKELQEQWKVAGPIPRDKYNNAWNSYHFNVERFYDLLHLDRDLRDKDFAHNLELKTKIIEQAEALANDENTNRAFRELQNLHKIWKEELGPVAREHREPIWDRFKEATKKINAKRQDYFKNLDKVYEQNLINKQAIITLIEEKANENITNHSGWQNKIKEIEALREEFFKAGKVPIKVNEATWASFKEAVRGFNRKKNDFYKSLKKDQYDNLEKKLALIKIAEENKDSEDFQATTQLMKKIQGDWKRIGHVPRKDSDKIWKQFKSACNHYFDRIKEQRNAASAEEEVAYTEKETLLAEVKNLALTGEQKTDLATIKEQINSWKTIGRVPRNKRQIESDFNDALDGLFKSLDLNKTEAELIKFENKLDQLTSGDDTKALDNERFYIQKKVDEIKGEINQLENNLQFFSNVKSDNPLVKDVHKNIKKHKDSLVLWTTKLKKIKSLY
>CP031612.1|AXO81550.1|3203344_3204082_-|shikimate-dehydrogenase
MRKYGLIGKDISYSFSQNYFTIKFKDEVITDATYQNFDIQDIEAFKTNILKTDNLSGLNVTIPYKETIIPFLDKLDKKAKKIGAVNTVKLTKKGQLKGYNTDIYGFKKTIKPHLKKRHKQALILGTGGASKAIAFVLNQLNIEYRFVSRKASKKAAFTYDTLTEEDIKKHKLIINCSPVGTFPDVNEAPKIPYNGISSKHILFDLIYNPSETVFLKNGKNKGATTINGYDMLVFQAEKSWKIWNK
>CP031612.1|AXO81551.1|3204074_3205094_-|DUF368-domain-containing-protein
MENLTTFKDKLFLVLKGIGMGAANKVPGVSGGVVAFVAGFYEEFIQSLQKVNGTALKLLFKGEFKLFYQYINGHFLSLLFLGMIISYFSISKLLDYLITHYHLYVWSVFFGMIIGSIYYISKDFKDWKTTTYIALIIGTAIGVSISFLDPAKQNDNLLFVFFCGIISVSGMTLPGFSGSFILILLGNYVLLLVDSVNALYDTVSDILVGDFSFTANIERIRMLKVLAVFTLGSIVGLVTFSHVLNYILKHYKSVTLASIIGFIIGSLGVVWPFKQTIYKMSTNNTFILDSKGHKIVENYHRYLPELNTQTYLAIFYTIMGIAIVLALEIYGNKTSQSHA
>CP031612.1|AXO81552.1|3205094_3206108_-|DUF368-domain-containing-protein
MQRRLKDYLLISLKGMAMGAADAVPGVSGGTIAFISGIYEELIATISGVNLSLFKTLKSEGVSAFWKQLNGNFLLALLTGIVISFVSFMRLAKYLLEHHPVLIWSFFFGLIIASILFIGKQITKWSVVTIVAVIIGAVTAFYLTSLPSLASNTSSYFLLIAGAIAICAMILPGISGSFILVILGAYKTLSDAFHDFDIKKIALFGTGAVIGLLSFSHVLKWLFKNYHNTTLAILTGFIIGSLNKVWPWKKTVSVMVEETGKVVPFNTVTDFGTLSFYQKTTNDFETYKTVLEQSVYPLNYSEINNYLAQPQTTLAIGLMVAGFLTIFILEKVGNKAK
>CP031612.1|AXO81892.1|3206160_3207549_-|hypothetical-protein
MEFSQEEPHKVSLKKFESMLKTNNVLFFDSSEFENIIHHYLNQGKVSLAKKAIKLGLDQHPTSTNLKLFQVEIYVFENKLKEANQLLDALYILEPSNEEIYIQKANILSKEDKHEAAIKVLKTALDLAEETSELHSLIGMEYLFLDKFQEAKHSFMRCLAEDSEDYSSLHNVMYCFDFLNENNEAIKFLNEYLDNNPYSEVGWHQLGKQYYAIKEYTKSLNAFDFAIISDDRFVGAYLEKGKVLEKLKRYNEAIENYALTLELDDPTSFALLRLGCCHEKLGQDDLAKQYYYKTVKEDPLLDKGWIAITKFYNKQKNYQKALYYINKAINIDSENVVYWKLFAQINHRLNYLEEAERGYKRALELGNYELNSWLQRTDILLQLGENEAASLNLIQAAEFYPEESEIEFRLAGIYYSILETEKGSYHLKNAWTINPENAIIIEELFPTIYKSLTFKKALNKLQ
>CP031612.1|AXO81553.1|3207684_3208878_-|aspartate-aminotransferase-family-protein
MKSEFLKYQAQTSPYPLALEISHAKGSYIYDTNKKAYLDFVAGVSACTLGHSHPKVIEAIKNQADKYLHVMVYGEYAQQPAVQLCQFMAKHLPDPLEATYLVNSGTEAIEGAIKLARRVTGRSQIIAAHNAYHGNTMGSLSLMDFEERKAPFRPLLSDISHITFNYEPHFKHITQKTAAVIVETIQGGAGFIEPTNDYLAKLKTRCHEVGALLILDEIQPGIGRTGKLFGFQNYNVIPDIVVTGKGLGGGLPIGAFTASKTHMDTLQNSPKLGHITTFGGNPLIAASALATLKQVVNSDLMSEVLNKEKLIKKHLKHPLITKIRGRGLMLAALTTSEDITNQVILEAQSQGLILFWLLFEPKAIRITPPLTISNEELIKGCGIIIDLLNKISDQNKS
>CP031612.1|AXO81893.1|3208887_3210630_-|hypothetical-protein
MLFSQLGIAQEKHILIKDSGAFGDIDEVNHPGASILTRSDQGQVHIYHDGIDMFCDKAIFYGKEDFVEAYGNVNMKQGDTINLTSKYVEYSGKTQLAFASGDVVLTDPQSTITTDTLYFNRANQESYYRTGGKVVRDSSGTITSRIGRYYMNQKKYRFVDSVRLVNPEYELNTKTLDYFSDNGHAYMYGPSTIVGDSSKIYSERGFYNTTNDTGYFVRKSRIDYDNRVIEGDSLYFDRNKNFASATNNIVVTDTINSSIIKGHYAEVYRAKDSVYITKRALAITTQETDSIYMHADTLMVTGKPEHRITRGYYNGKVYKSDISAKADSIHADHKTGLTQLINLKRLNKGDAFSVARRPILWNLDNQMTGDTIHLKSNPKTEKLDSLIVFNNAFLISKDTISEDAYNQISGKVLIGLFDDNNDIKQVDILKNAESINYSRNDDKELIGIEKSKSADILILFEAKEVIELRKITQFEGKLYTEEDLPKNARKLRGFDWRDDERPKSVEDLFKDDPPLNLPTIKGLEPYKADEEFFGDALLDRVNKADQEAENKKLNQKDQAPKASRTIPKKFLKPLIASKKE
>CP031612.1|AXO81554.1|3210796_3212068_-|adenylosuccinate-synthase
MAVDLLLGLQWGDEGKGKIVDVLTSKYNIIARFQGGPNAGHTLVFNGKKHVLHTIPSGIFHDEATNLVGNGVVIDPVIFKKELDKLEEQDVDYRKSLLISRKAHIILPTHRLLDAASETAKGKAKIGSTLKGIGPTYMDKTGRNGLRVGDLELDTWKDKYRSLADKHESMIDFYNVDIQYNLKELETEFFEAVKVLKSLKFIDSEEYIYQAQKSGQSILAEGAQGSLLDIDFGTYPFVTSSNTTAAGACTGLGVAPNKIGEVFGIFKAYTTRVGSGPFPTELFDVDGETMAKVGHEFGATTGRPRRCGWLDLVALKYACQVNGVTQLMMMKADVLSGFKTLKVATGYKYKGETITHLPYNIEPENVEPIYSDFKGWSEDLTEMSEASTLPSELNDYIDFLEKELEIPITIVSVGPDRKQTIFR
>CP031612.1|AXO81555.1|3212070_3212538_-|transcriptional-repressor
MSGKTDIKNQEIVKNVFTSFLEDNGHRKTPERYAILQEIYSNSEHFDIESLYDNMKKKKYRVSRATLYNTIELLLDCGLVRKHQFGKNQAHYEKSYFDKQHDHVILQDTGEVIEFCDPRIQAIKKTIEEVFDIEISKHSLYFYGNRKKNNNNTTN
>CP031612.1|AXO81556.1|3212633_3214853_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MIEIDIEKENAEIAKAYKHLLKVSYRTLSDDDKKLIRKAFDVAVEAHSHQRRKSGEAYIFHPIAVAKIVAEQIGLDATSIAAALLHDVVEDNEDYSIKDIENLFGTTVAKIVDGLTKISSLSKEKDMDVSLQAENFRKMLLTLNDDVRVIIIKIADRLHNMQTMDSMRPDKQEKIASETLYIYAPLAHRIGLYNIKTELEDLGLKYTEPDTYNDILNKIKESKEQQDAYIDEFNEVIKTSLDKEGLNYSIKGRPKSIFSIKRKMAKQGVTFDEVYDKFAVRIIYKSDRNNEKFLAWKIYSIVTDHFRPNPTRLRDWISSPKSTGYEALHITVMGPKGRWVEVQVRSERMNEIAEKGYAAHYKYKNADDKEDNLDIWINRLQEALENASTNAVDFVEQFKLNLYSKEIFVFTPKGELKSLPKGATPLDFAFNIHTEVGRKTRGAKVNGKLVPLSHTLKSGDQVEIITSESAKPNPNWLDYATTARARGKIKSLLKEETKAIAADGKEILRRKLKQLKITLNEKAVNEMVSHFNLKTSLDLFYRVGTGNIDNTMLKEYAASRSNALVSFLKSKMNRKPGTNPDDINKDEITNKYDLLVFGKEEERLDYKLANCCNPIPGDSVFGFITINDGIKVHKKNCPNALSLQSNYAYRIMQAKWIDSSQQEFAAQIRLSGIDNLGLVNDITKVISSNMHVNMNSLSFQSDDGVFKGKINVIVRNKTMLKKLIDNLKKINGIDKVSRI

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

123987 : 185704

Acinetobacter_phage(28.57%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO78950.1\|123987_124794_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-29	34.0
AXO78951.1\|124838_125210_-\|transposase	transposase	NA	NA	NA	NA
AXO78952.1\|125392_126781_-	tetratricopeptide repeat protein	A0A2H4JAN9	uncultured_Caudovirales_phage	1.0e-05	23.2
AXO78953.1\|126947_127877_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.4e-24	34.7
AXO78954.1\|128819_129473_-	DUF4279 domain-containing protein	NA	NA	NA	NA
AXO78955.1\|129638_130079_-	hypothetical protein	NA	NA	NA	NA
AXO78956.1\|130967_131675_-	SIMPL domain-containing protein	NA	NA	NA	NA
AXO78957.1\|131919_132441_+\|transposase	transposase	NA	NA	NA	NA
AXO78958.1\|132359_133271_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.7e-76	52.5
AXO78959.1\|133361_135113_-	hypothetical protein	NA	NA	NA	NA
AXO78960.1\|135558_136479_-	type IX secretion system membrane protein PorP/SprF	NA	NA	NA	NA
AXO78961.1\|136489_144880_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
AXO78962.1\|145692_149376_+	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AXO78963.1\|149711_150161_-	hypothetical protein	NA	NA	NA	NA
AXO78964.1\|150348_151695_-	VCBS repeat-containing protein	NA	NA	NA	NA
AXO78965.1\|152079_152556_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	4.1e-10	28.4
AXO78966.1\|152630_153119_+	hypothetical protein	NA	NA	NA	NA
AXO78967.1\|153267_155361_+	histidine kinase	NA	NA	NA	NA
AXO78968.1\|155365_156007_+	DNA-binding response regulator	NA	NA	NA	NA
AXO78969.1\|156353_156773_+	hypothetical protein	NA	NA	NA	NA
AXO78970.1\|156807_157488_+	hypothetical protein	NA	NA	NA	NA
AXO78971.1\|157566_158358_-	hypothetical protein	NA	NA	NA	NA
AXO78972.1\|158741_159158_+	hypothetical protein	NA	NA	NA	NA
AXO78973.1\|159172_159643_+	hypothetical protein	NA	NA	NA	NA
AXO78974.1\|160075_160432_+	hypothetical protein	NA	NA	NA	NA
AXO78975.1\|160695_163716_-	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AXO78976.1\|164266_165208_-	hypothetical protein	NA	NA	NA	NA
AXO78977.1\|166701_167205_-	hypothetical protein	NA	NA	NA	NA
AXO78978.1\|167426_168290_+	EamA family transporter	NA	NA	NA	NA
AXO78979.1\|168331_168847_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AXO78980.1\|169123_169501_-	hypothetical protein	NA	NA	NA	NA
AXO78981.1\|169656_170694_-	hypothetical protein	NA	NA	NA	NA
AXO78982.1\|170949_172605_-	hypothetical protein	NA	NA	NA	NA
AXO78983.1\|172640_173024_-	VOC family protein	NA	NA	NA	NA
AXO78984.1\|173043_174336_-	threonine synthase	NA	NA	NA	NA
AXO78985.1\|174385_175309_-	homoserine kinase	NA	NA	NA	NA
AXO78986.1\|175370_177812_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
AXO78987.1\|178037_179594_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
AXO78988.1\|179663_180716_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
AXO78989.1\|180844_182353_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	3.2e-85	38.8
AXO78990.1\|182344_182725_-	hypothetical protein	NA	NA	NA	NA
AXO81789.1\|183148_185704_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.2e-129	34.6

DBSCAN-SWA_2

438482 : 471143

Bacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO79201.1\|438482_439004_+\|transposase	transposase	NA	NA	NA	NA
AXO79202.1\|438922_439834_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.7e-76	52.5
AXO79203.1\|439951_440716_+	hypothetical protein	NA	NA	NA	NA
AXO79204.1\|440786_442343_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
AXO79205.1\|442556_443033_+	hypothetical protein	NA	NA	NA	NA
AXO79206.1\|443169_443724_+	hypothetical protein	NA	NA	NA	NA
AXO81800.1\|444412_445006_+	hypothetical protein	NA	NA	NA	NA
AXO79207.1\|445149_445680_+	hypothetical protein	NA	NA	NA	NA
AXO79208.1\|445784_446768_+	exo-alpha-sialidase	NA	NA	NA	NA
AXO81801.1\|446854_447532_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
AXO79209.1\|447776_448937_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
AXO81802.1\|448958_449954_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
AXO79210.1\|449966_450599_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
AXO79211.1\|450607_451273_-	nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA
AXO79212.1\|451274_451859_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXO79213.1\|451995_453198_-	GAF domain-containing protein	NA	NA	NA	NA
AXO79214.1\|453452_454541_+	alkene reductase	NA	NA	NA	NA
AXO79215.1\|454624_455938_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
AXO79216.1\|456579_457167_+	hypothetical protein	NA	NA	NA	NA
AXO79217.1\|457239_457950_-	hypothetical protein	NA	NA	NA	NA
AXO79218.1\|458090_458423_-	transcriptional regulator	NA	NA	NA	NA
AXO79219.1\|458669_459329_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA
AXO79220.1\|459356_460196_+	DUF4437 domain-containing protein	NA	NA	NA	NA
AXO79221.1\|460369_461332_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
AXO79222.1\|461504_462296_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AXO79223.1\|462383_463004_+	MarC family protein	NA	NA	NA	NA
AXO79224.1\|463025_463622_+	NAD(P)H oxidoreductase	NA	NA	NA	NA
AXO81803.1\|463626_465519_+	potassium transporter	NA	NA	NA	NA
AXO79225.1\|465518_466400_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXO79226.1\|466488_466686_+	hypothetical protein	NA	NA	NA	NA
AXO79227.1\|466682_467060_+	hypothetical protein	NA	NA	NA	NA
AXO79228.1\|467390_467795_-	hypothetical protein	NA	NA	NA	NA
AXO79229.1\|467853_468660_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.4e-31	34.7
AXO79230.1\|468718_469075_-\|transposase	transposase	NA	NA	NA	NA
AXO79231.1\|469259_469739_-	hypothetical protein	NA	NA	NA	NA
AXO79232.1\|470171_471143_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2274963 : 2281672

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO80774.1\|2274963_2275980_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.9e-81	46.4
AXO80775.1\|2275991_2276855_+	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	1.8e-96	61.7
AXO80776.1\|2276858_2277401_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	9.0e-38	47.5
AXO80777.1\|2277400_2278252_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	2.1e-41	37.7
AXO80778.1\|2278479_2279565_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	4.3e-132	67.1
AXO80779.1\|2279577_2280744_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A218MN59	uncultured_virus	1.5e-50	34.5
AXO80780.1\|2280736_2281672_+	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	1.3e-92	51.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031612

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection