CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031686	Haemophilus influenzae strain P642-4396 chromosome, complete genome	2 crisprs	DinG,DEDDh,cas3,WYL	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031686_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031686_1

1148574-1148722

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP031686_1

>merge|CP031686|1|1148574-1148722|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>CP031686|1|1|1148574-1148722|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP031686.1\|AXP54642.1\|1153795_1154161_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|129260
CP031686.1\|AXP54638.1\|1150661_1150919_+\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|182777
CP031686.1\|AXP54633.1\|1143811_1144618_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
CP031686.1\|AXP54626.1\|1136047_1136785_+\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|212111
CP031686.1\|AXP54629.1\|1139582_1140455_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
CP031686.1\|AXP54632.1\|1143330_1143675_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
CP031686.1\|AXP54631.1\|1142975_1143329_-\|UPF0231-family-protein	unknown	unknown	gnl\|CDD\|225654
CP031686.1\|AXP54644.1\|1154887_1156243_+\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388
CP031686.1\|AXP54636.1\|1148843_1149392_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
CP031686.1\|AXP54634.1\|1144710_1147302_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein	unknown	unknown	gnl\|CDD\|234980
CP031686.1\|AXP54635.1\|1147376_1148444_+\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|131433
CP031686.1\|AXP54639.1\|1150998_1152726_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
CP031686.1\|AXP54637.1\|1149462_1150503_+\|ribosome-small-subunit-dependent-GTPase	unknown	unknown	gnl\|CDD\|237039
CP031686.1\|AXP54628.1\|1138092_1139427_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
CP031686.1\|AXP54630.1\|1140620_1142969_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
CP031686.1\|AXP54640.1\|1152785_1153286_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
CP031686.1\|AXP54641.1\|1153468_1153681_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224399
CP031686.1\|AXP54643.1\|1154225_1154891_+\|two-component-system-response-regulator-QseB	unknown	unknown	gnl\|CDD\|182387
CP031686.1\|AXP54645.1\|1156519_1158547_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
CP031686.1\|AXP54627.1\|1136828_1138022_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|224826

Protein	Function_ID	Function_description	E-value
CP031686.1\|AXP54642.1\|1153795_1154161_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	8.01756e-57
CP031686.1\|AXP54638.1\|1150661_1150919_+\|HPr-family-phosphocarrier-protein	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.7508e-37
CP031686.1\|AXP54633.1\|1143811_1144618_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	2.57949e-160
CP031686.1\|AXP54626.1\|1136047_1136785_+\|LamB/YcsF-family-protein	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.85636e-152
CP031686.1\|AXP54629.1\|1139582_1140455_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
CP031686.1\|AXP54632.1\|1143330_1143675_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.3229e-81
CP031686.1\|AXP54631.1\|1142975_1143329_-\|UPF0231-family-protein	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	1.13056e-58
CP031686.1\|AXP54644.1\|1154887_1156243_+\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.27076e-177
CP031686.1\|AXP54636.1\|1148843_1149392_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.63664e-134
CP031686.1\|AXP54634.1\|1144710_1147302_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
CP031686.1\|AXP54635.1\|1147376_1148444_+\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
CP031686.1\|AXP54639.1\|1150998_1152726_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
CP031686.1\|AXP54637.1\|1149462_1150503_+\|ribosome-small-subunit-dependent-GTPase	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
CP031686.1\|AXP54628.1\|1138092_1139427_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
CP031686.1\|AXP54630.1\|1140620_1142969_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP031686.1\|AXP54640.1\|1152785_1153286_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.49426e-100
CP031686.1\|AXP54641.1\|1153468_1153681_+\|hypothetical-protein	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	9.985e-06
CP031686.1\|AXP54643.1\|1154225_1154891_+\|two-component-system-response-regulator-QseB	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	3.28549e-101
CP031686.1\|AXP54645.1\|1156519_1158547_+\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
CP031686.1\|AXP54627.1\|1136828_1138022_+\|divalent-metal-cation-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	2.41376e-86

>CP031686.1|AXP54635.1|1147376_1148444_+|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MLSIFVTFLGAFLTLIVMRPLANWIGLVDKPNYRKRHQGTIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNIYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGILMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITHAWRITRWVRRMKRRAKRLKKA
>CP031686.1|AXP54634.1|1144710_1147302_+|bifunctional-uridylyltransferase/uridylyl-removing-protein
MLFPLSLSSPLTPSAVKIERENLKQFELENFSRYSIFELVENRSDFYDALLIQLWQEMGLSEQLGISLIAVGGYGRREMFPLSDLDFLILVEQTPIPEIEEKITQFIQFLWDCGFEVGHSVRTLQQCESEGKQDITIATNLLEARFLIGNRPHFDALNELVKRADFWSKEGFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALHHSGAQTLEDILQSGFIYPQEYQQLQESRAFLFKVRFALHLILTRYDNRLLFDRQIKVSELLGFRGEGNQAVEKMMKCFFQALHRISLISNLLIQHYRENVLSSNQATVIEQLDDDFQLINQCLCLRNSLVFQEKPARILDLFFYLTQYEQANIHSDTLRQLQISLEQLPQKLCEIPEAREKFLRLFNQPNSIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAQEHPIAHRIFSQLSDRTLLYIAALFHDIAKGRGGDHAELGAKDVANFARLHGLDRREIDTLAWLVQSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTEQQFAQGMKELLDYSEKSAENRKLAQQILTQDYSDIMPISIDQLWERCPEDYFVRNTPKQIAWHTSLLVDLVEALLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>CP031686.1|AXP54633.1|1143811_1144618_+|type-I-methionyl-aminopeptidase
MAIPIRTKKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPNIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMINV
>CP031686.1|AXP54632.1|1143330_1143675_-|iron-sulfur-cluster-insertion-protein-ErpA
MIDDIAVPLTFTDAAANKVKSLISEEENTNLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>CP031686.1|AXP54631.1|1142975_1143329_-|UPF0231-family-protein
MDFQFTHYQGNVSVTCSMEHIAFANWFNTEVRSNSDKILTALSSAKSLIENQEKILIGAEYTLFLNADEVMVRANNLAIESDEILEQDFHYYDEESLAFCGTQDFIHFLQSYVDFIA
>CP031686.1|AXP54630.1|1140620_1142969_-|penicillin-binding-protein-1B
MTSQHSAKKSSKNTPKNNRTFKGFLLKFSFTVLVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSRLESVKIADNLAFDEVIQILLDNEYRQTTMVAAPGDFKLEDDSIVVLRRAFPFPDKAEPQRVLRLRFADNKLNRIEDLVAVKAIDEFRLAPKLIAMLQSDNEDRLAIPLQNYPRLLIDTLILTEDRRFYEHNGINPVGILRALIANIRAGQTVQGGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLKLMLEHKMIGDELYQLLSQRPLGVQKKGQISRKYPAFIQTLQADLRRELGEHKMSSLLGARIFSTMDLKQQAQAENAVVNTVSQLQLKTKNPHLESAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTLINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGSYTISPYDVTKLYQTIANQGGRISLTTVDSITDRQGNLIFQHDKSVKQVVPQEAAFQTLFAMQQTVERGTARSLQKDYADLHLAGKTGTTNEARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPATVKWVGINQYGGWDCESYRTIPVWLNNGQNFCGEIASPSFTPTEAETTTPPQESLWDVLDNPNPPAQ
>CP031686.1|AXP54629.1|1139582_1140455_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTQQSLTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIKDRAVVCKRLTPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPENLVEASKLPEAIFTPSSKEEVGNHDINISYAECEKLIGSDLAAQVKEKAIALYTEASEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSVDTYQAGTNPPSFDKQFVRDWLENSGWNKQAPAPKVPKNIIQKTVDKYQEALDLLTK
>CP031686.1|AXP54628.1|1138092_1139427_-|argininosuccinate-synthase
MSNTILQNLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYNAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDVQFIEELGGRLEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEDGVPVALNGKHFDNAVDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPVDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>CP031686.1|AXP54627.1|1136828_1138022_+|divalent-metal-cation-transporter
MASITHRRNAVLGAAFLMATSAIGPGFLTQTATFTNTLLASFGFVILLSILLDIGAQLNIWRIVIVSGKRAQDISNAVFPKAGYFLAALIVMGGLAFNIGNVGGAGLGLNSIFGIAPEMGAVISGIIAILIFLRKEAGLLMDRFAQLMGFIMVALTFYVMFKTEPPVAEAAYHSFIPEKIDPIAIVTLVGGTVGGYITFAGAHRLLDAGIQGEKAMAEVSRSSVSAILIASTMRVVLFLAVLGVVSKGVSLNPKNPAETPFEYVAGNFGQVLFGVVIWAASVTSVIGAAYTSVSFLTTLCPTIERNRNRWIIAFIVISTVVLVTVGKPAAVLVFVGTLNGLILPIALALILLAAYRSDIVGTYKHPVFLAFSGWFVVIIMAILSGKTIISYISSFFS
>CP031686.1|AXP54626.1|1136047_1136785_+|LamB/YcsF-family-protein
MKKIDLNADIAEGFPFDESLLQLLSSANIACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARVIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNHIKITA
>CP031686.1|AXP54636.1|1148843_1149392_-|oligoribonuclease
MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>CP031686.1|AXP54637.1|1149462_1150503_+|ribosome-small-subunit-dependent-GTPase
MAKRKLTQNQTRRIQSNNAKTLHRHKKKDIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSLV
>CP031686.1|AXP54638.1|1150661_1150919_+|HPr-family-phosphocarrier-protein
MYSKDVEIIAPNGLHTRPAAQFVKEAKAFSSEITVTSGGKSASAKSLFKLQTLVLTQGTILTISADGEDEQQAVDHLVALIPTLE
>CP031686.1|AXP54639.1|1150998_1152726_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRAAAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAGVAASKILDQQVTMLSEIDDEYLKERAGDIRDIANRLVKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNKVTKLVNTGDYLILDAINNQVYINPTASQIDELKALEAKISEEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCDGAERNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKQVVEAMNGRLTVLRTMDIGGDKELSYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELREEGRLFDNNIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNEFISHLYNPMHPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKVLADTALQKPTAAEIDQLIEEFLLENSLN
>CP031686.1|AXP54640.1|1152785_1153286_+|PTS-glucose-transporter-subunit-IIA
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAVRPIGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRSDTVIEFDLALLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLALKK
>CP031686.1|AXP54641.1|1153468_1153681_+|hypothetical-protein
MQNIQYECGETHHLKAQSASILLVMKGQLNLRSETTALSLKQGKVAFITAGAAYEVEGLIEGYAVVAKLP
>CP031686.1|AXP54642.1|1153795_1154161_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQQIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRIEKVE
>CP031686.1|AXP54643.1|1154225_1154891_+|two-component-system-response-regulator-QseB
MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
>CP031686.1|AXP54644.1|1154887_1156243_+|two-component-system-sensor-histidine-kinase-QseC
MKNRSLTLRLISVLCLTALFVWLGSTLVAWWQVRHDVNKVFDAQQVLFAERLANSDLSTILLESSTTLNKNSQSVLKKSYDDDALAFAIFSKTGKLLFSDGRNGKDFIFNYKTGFYNANIYDDDDKWRIFWRMAANGELVIAVGQELDYREDLIEEMILGQMWIWFASLPILIIVLGWLIHKELRPIKRLSQEVQTRKSGDVSLLNTEGLPVEILPLVKNLNQFFDRTSAMLQRERRFTSDAAHELRSPLAALRIQTEVAQLAGDDVALREQALLHLTQGIDRASQLIEQLLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKASEPKQKQGQSILVSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAELHGFKVRLENVVKEGRRIGLKAIISL
>CP031686.1|AXP54645.1|1156519_1158547_+|BCCT-family-transporter
MSLSQFMTKRTSFNPLVIGVTLFFILLLMAMIFIAPEQTQALLNQAKSGIFANFSWFYVLTFSVFLGFLLILSVSSLGNIKLGQDEEEPEFSFLSWLAMLFAAGMGVGLMFFGVAEPLTHYLSDITVGSAEHKQQEALLHTLFHWGIHAWAVYGTIALALAYFGFRYKLPLALRSCFYPLLKDRINGKIGDAIDVMALLATLFGIITTLGFGSSQLGAGLEQIGWISQNSFALQVGVIVVVMCLAVFSAISGIGKGVKILSEINLTLAFCLLLFVLISGPTLYLLSAFSDNIGNYFSNLVQLSFKTYAYEQEHTSWFSGWTVLYWAWWCSWAPFVGLFIARISKGRTIREFIFGVLVIPSLFGILWFTVFGNTAVWLNDGIAAGGLGEFISSPEILLFKFLNYLPLPTITGFVSLLVISLFFITSADSGIYVLNNIASRDKSLASPAWQAIMWGTLMSVVAIVLMQSGGLANLQTMTLIVALPFALLMLVMCFSLWKGLIADKKYFSTKVNPTSIFWSGDKWKSHLEQMMNQTQEKDILRFLKNTALPAMRELRQELTGKYNLSVEINTLFEQEEPALELVIHKESMRDFMYGIKSVGREVSEQLINDENLPHIQHSVTYEPYTYFFDGRVGYDVQYMDQDELIADMLKQYERYLSLLDDVGQELMAHEQTELAE

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Crispr_ID: CP031686_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031686_2

1177429-1177516

Orphan

Consensus_repeat	Method
ACCTTCCCCCGCAAGCAAGGGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031686_2

>merge|CP031686|2|1177429-1177516|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGGCAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGATACCTTCCCCCGCAAGCAGGGGAAGG

>CP031686|2|2|1177429-1177516|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGG	CAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGAT
ACCTTCCCCCGCAAGCAGGGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031686.1\|AXP54665.1\|1181900_1182482_-\|electron-transport-complex-subunit-B	unknown	unknown	gnl\|CDD\|235347
CP031686.1\|AXP54653.1\|1168024_1169086_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340847
CP031686.1\|AXP54657.1\|1172586_1173351_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
CP031686.1\|AXP54655.1\|1169882_1170767_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
CP031686.1\|AXP54658.1\|1174200_1175256_+\|molybdenum-import-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
CP031686.1\|AXP54659.1\|1175279_1176653_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
CP031686.1\|AXP54666.1\|1182569_1183148_-\|electron-transport-complex-subunit-A	unknown	unknown	gnl\|CDD\|235352
CP031686.1\|AXP54654.1\|1169097_1169871_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
CP031686.1\|AXP54663.1\|1178863_1179940_-\|electron-transport-complex-subunit-D	unknown	unknown	gnl\|CDD\|234844
CP031686.1\|AXP54660.1\|1176711_1177347_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
CP031686.1\|AXP54667.1\|1183430_1184492_-\|protease	unknown	unknown	gnl\|CDD\|236978
CP031686.1\|AXP54661.1\|1177531_1178239_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
CP031686.1\|AXP54670.1\|1187657_1189610_-\|adhesin	unknown	unknown	gnl\|CDD\|375681
CP031686.1\|AXP54668.1\|1184691_1185357_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|234990
CP031686.1\|AXP54662.1\|1178240_1178864_-\|electron-transport-complex-subunit-G	unknown	unknown	gnl\|CDD\|179350
CP031686.1\|AXP54669.1\|1185424_1187560_+\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
CP031686.1\|AXP54664.1\|1179944_1181900_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
CP031686.1\|AXP55334.1\|1170786_1171572_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133038
CP031686.1\|AXP54656.1\|1171681_1172449_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
CP031686.1\|AXP55335.1\|1173524_1174214_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841

Protein	Function_ID	Function_description	E-value
CP031686.1\|AXP54665.1\|1181900_1182482_-\|electron-transport-complex-subunit-B	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
CP031686.1\|AXP54653.1\|1168024_1169086_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	3.30343e-135
CP031686.1\|AXP54657.1\|1172586_1173351_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	3.40456e-98
CP031686.1\|AXP54655.1\|1169882_1170767_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.68429e-32
CP031686.1\|AXP54658.1\|1174200_1175256_+\|molybdenum-import-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
CP031686.1\|AXP54659.1\|1175279_1176653_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.13115e-164
CP031686.1\|AXP54666.1\|1182569_1183148_-\|electron-transport-complex-subunit-A	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	5.78855e-111
CP031686.1\|AXP54654.1\|1169097_1169871_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	6.22864e-55
CP031686.1\|AXP54663.1\|1178863_1179940_-\|electron-transport-complex-subunit-D	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
CP031686.1\|AXP54660.1\|1176711_1177347_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	8.06206e-140
CP031686.1\|AXP54667.1\|1183430_1184492_-\|protease	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
CP031686.1\|AXP54661.1\|1177531_1178239_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	4.5237e-131
CP031686.1\|AXP54670.1\|1187657_1189610_-\|adhesin	gnl\|CDD\|375681	pfam18254, HMw1_D2, HMW1 domain 2. This domain is found in Actinobacillus pleuropneumoniae HMW1C (ApHMW1C). HMW1 adhesin is an N-linked glycoprotein that mediates adherence to respiratory epithelium through N-glycosylation of protein acceptor sites and O-glycosylation of sugar acceptor sites. This domain forms an all alpha domain (AAD) when combined with the N-terminal domain. The AAD interacts extensively with the C-terminal GT-B fold in order to create a unique groove with the potential to accommodate the acceptor protein.	2.14568e-48
CP031686.1\|AXP54668.1\|1184691_1185357_+\|DUF2057-domain-containing-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	2.00852e-117
CP031686.1\|AXP54662.1\|1178240_1178864_-\|electron-transport-complex-subunit-G	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.08851e-127
CP031686.1\|AXP54669.1\|1185424_1187560_+\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
CP031686.1\|AXP54664.1\|1179944_1181900_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
CP031686.1\|AXP55334.1\|1170786_1171572_+\|glycosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	2.3253e-117
CP031686.1\|AXP54656.1\|1171681_1172449_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	2.3464e-84
CP031686.1\|AXP55335.1\|1173524_1174214_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	1.3737e-137

>CP031686.1|AXP54660.1|1176711_1177347_-|endonuclease-III
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>CP031686.1|AXP54659.1|1175279_1176653_-|sodium-dependent-transporter
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENGGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISTPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLSGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>CP031686.1|AXP54658.1|1174200_1175256_+|molybdenum-import-ATP-binding-protein-ModC
MLQINVKKQLGKLALQANIQVPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPTHLRKIGYVFQDARLFPHYTVKGNLRYGMKHVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSLDELLRLADRVVLMENGIVQAYDSVEKIWNSPIFAPWKGENEQSSVLALPVHLHNPPYKMTALSLGEQALWIHQVPANVGERVLVCIYSSDVSIILQKPEQTSIRNILRGKITQIEIQDSRVDLAVLVEGNKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>CP031686.1|AXP55335.1|1173524_1174214_+|molybdate-ABC-transporter-permease-subunit
MEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVLSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIAGETQTIPLAMYSFIQTPAAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAN
>CP031686.1|AXP54657.1|1172586_1173351_+|molybdate-ABC-transporter-substrate-binding-protein
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAAEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK
>CP031686.1|AXP54656.1|1171681_1172449_-|LysR-family-transcriptional-regulator
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTVLTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEQPLVNQPNQFSVNIKSLNEEEAILQFAESNIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>CP031686.1|AXP55334.1|1170786_1171572_+|glycosyltransferase
MSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGAVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCTYDWVFRMDTDDICVPDRFEKQVAFIEQHPESIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYMANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQGLLSGLFTFALRFGSRLLPTSLLKKLYQTFLRK
>CP031686.1|AXP54655.1|1169882_1170767_+|glycosyltransferase-family-2-protein
MLSIIVPSYNRKAEVPALLESLTQQTSSNFEVIIVDDYSKERVVVEQRYSFPVTVIRNETNQGAAESRNIGARASKGDWLLFLDDDDRFMPEKSEKILQVIEQNPDINFIYHPAKCEMVNEGFSYVTQPIEPQEISTERILLANKIGGMPMVAIKKEMFLKIGGLSTALRSLEDYDFLLKLLQEPSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQARNFDINASYILAYPHIMNLSRKAAKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>CP031686.1|AXP54654.1|1169097_1169871_+|glycosyltransferase-family-25-protein
MLKKYLISLDKDIQRRKLFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAHYFRNVTKGEIGCTLSHLSVYQKIIEDNDIAEDSYALVCEDDALFHSDFQQNLTALLSEKLEAEIILLGQSKINSFNDTDLEINYPTTFSFLCKKTGNVNYAFPYKSYFAGTVGYLIKKSAARRFIQQISQNKPFWLADDFLLFEQDFNIRNKVVRPLMVIENPVLISNLESVRGSLSNNLLKKLMKYPLKKIFAIKKNLAN
>CP031686.1|AXP54653.1|1168024_1169086_+|glycosyltransferase-family-4-protein
MKKIGFFIMNIESAGGTERVSINVANALAKQGYDVSFISIVGNKPFFQVDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDTLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRLVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIITIANPNTLLPKNKLAKWENKTILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALDIEDSVNFTPRTNDVSFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEKNNIEEMVKGLDLLINNPELYQQMSDKSRLMSEDYGIEKIIEEWKGIL
>CP031686.1|AXP54661.1|1177531_1178239_-|electron-transport-complex-subunit-E
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLSLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNVKK
>CP031686.1|AXP54662.1|1178240_1178864_-|electron-transport-complex-subunit-G
MGTVKITSRYGILLGFIALLCTIISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQLSTQVK
>CP031686.1|AXP54663.1|1178863_1179940_-|electron-transport-complex-subunit-D
MFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVLLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLILKRIIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>CP031686.1|AXP54664.1|1179944_1181900_-|electron-transport-complex-subunit-RsxC
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQTQPTDAKKAVVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAKTQTTLENNQE
>CP031686.1|AXP54665.1|1181900_1182482_-|electron-transport-complex-subunit-B
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>CP031686.1|AXP54666.1|1182569_1183148_-|electron-transport-complex-subunit-A
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>CP031686.1|AXP54667.1|1183430_1184492_-|protease
MLNDILTGYGIFILEILTILLLILAILGLIISYRQHNKSKVGELEIKDLSEEFNEQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGETLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKSEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>CP031686.1|AXP54668.1|1184691_1185357_+|DUF2057-domain-containing-protein
MKLRAVVLGLATLCASTATFAGMVSTSSNLEFLAIDGQKASKSLGKAKTFTVDDTQNHQVVVRLNEIVGSGSNQSLFESNPVIVTFQGNAEDLVISAPVIRNLDSGDKFNQMPNITVKTKSGNAISAKVDVLKQEGLFPSGNVLNDLAEYNASGAAASVSKFAATTVASSVAVAPAGNAKANKGKVVVQGENVAEQQLQYWFQQADKETQTRFLNWAKSHK
>CP031686.1|AXP54669.1|1185424_1187560_+|TIGR01666-family-membrane-protein
MNIRLNTKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPRTQRMLRYYFAAQDIHERTNSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKPYHFNERVERALLGTLHSFELYRAQHLNDQDELIDIQTLLDNLQSINWQLRQLAQDTTDTEQLAQIHTEQITGLKNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKQGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARRNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQEMTAEERAVFSLPYQQLNLITQLLPQFYEYFRKESC
>CP031686.1|AXP54670.1|1187657_1189610_-|adhesin
MTKENLQNAPQNTTVSLVESNNNQTSPQMLQQSPKPSLLRLEQHIAKKDYEFACRELMVILEKMDANFGGVHDIEFDAPAQLAYLPEKLLIYFATRLANAITTLFSDPELAISEEGALKMISLQRWLTLIFASSPYVNADHILNKYNINPDSEGGFHLATDNSSIAKFCIFYLPESNVNMSLDALWAGNQQLCASLCFALQSSRFIGTASAFHKRAVVLQWFPKKLAEIANLDELPANILHDVYMHCSYDLAKNKHDVKRPLNELVRKHILTQGWQDRYLYTLGKKDGKPVMMVLLEHFNSGHSIYRTHSTSMIAAREKFYLVGLGHEGVDKIGREVFDEFFEISSNNIMERLFFIRKQCETFQPAVFYMPSIGMDITTIFVSNTRLAPIQAVALGHPATTHSEFIDYVIVEDDYVGSEDCFSETLLRLPKDALPYVPSALAPQKVDYVLRENPEVVNIGIAATTMKLNPEFLVTLQEIRDKAKVKIHFHFALGQSTGLTHPYVKWFIESYLGDDATAHPHAPYHDYLAILRDCDMLLNPFPFGNTNGIIDMVTLGLVGVCKTGDEVHEHIDEGLFKRLGLPEWLIADTRETYIECALRLAENHQERLELRRYIIENNGLQKLFTGDPRPLGKILLKKTNEWKRKHLSKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031686_3	3.1\|1245918\|49\|CP031686\|CRISPRCasFinder	1245918-1245966	49	CP031686.1	1245882-1245930	1	0.98

1. spacer 3.1|1245918|49|CP031686|CRISPRCasFinder matches to position: 1245882-1245930, mismatch: 1, identity: 0.98

tgtgcagtagtagcaggagctgctgcctgtggtgcttgtgcagtagtag	CRISPR spacer
tgtgcagtagtatcaggagctgctgcctgtggtgcttgtgcagtagtag	Protospacer
************ ************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

654350 : 708651

Haemophilus_phage(15.22%)

holin,tail,plate,tRNA,head,integrase,terminase

attL 649242:649258|attR 685325:685341

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
649242:649258	attL	NA	NA	NA	NA
AXP54185.1\|654350_655376_-\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	9.6e-57	35.4
AXP54186.1\|655273_655588_-	DNA-binding protein	NA	NA	NA	NA
AXP54187.1\|655714_656002_-	hypothetical protein	NA	NA	NA	NA
AXP54188.1\|656005_656488_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.5e-31	46.1
AXP54189.1\|656536_657811_-	DNA (cytosine-5-)-methyltransferase	A0A2I7QRH3	Vibrio_phage	7.7e-96	46.9
AXP54190.1\|657818_658178_-	hypothetical protein	NA	NA	NA	NA
AXP54191.1\|658174_658411_-	hypothetical protein	NA	NA	NA	NA
AXP54192.1\|658407_658977_-	hypothetical protein	NA	NA	NA	NA
AXP54193.1\|659146_660115_-	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	1.4e-33	61.5
AXP54194.1\|660772_661390_-	exonuclease	A0A0M3LPU0	Mannheimia_phage	1.8e-87	76.7
AXP54195.1\|661383_662166_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	1.0e-87	61.9
AXP54196.1\|662167_663073_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	2.8e-52	43.8
AXP54197.1\|663086_663380_-	hypothetical protein	NA	NA	NA	NA
AXP54198.1\|663376_663721_-	hypothetical protein	NA	NA	NA	NA
AXP54199.1\|663808_664840_-	endonuclease	D0UIK6	Aggregatibacter_phage	4.1e-39	79.8
AXP54200.1\|664829_665081_-	hypothetical protein	NA	NA	NA	NA
AXP54201.1\|665200_665512_-	hypothetical protein	NA	NA	NA	NA
AXP54202.1\|665896_666082_-	hypothetical protein	NA	NA	NA	NA
AXP54203.1\|666232_667381_-	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	1.7e-30	36.2
AXP54204.1\|667391_668252_-	hypothetical protein	NA	NA	NA	NA
AXP54205.1\|668314_668680_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AXP54206.1\|668681_669269_-	recombinase NinG	A0A2I7RAC0	Vibrio_phage	3.7e-37	48.5
AXP54207.1\|669357_669777_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	3.7e-55	74.6
AXP54208.1\|669851_670418_-	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	1.9e-83	78.3
AXP54209.1\|670414_671050_-	replication P	A0A1P8DTF3	Proteus_phage	1.6e-17	33.3
AXP54210.1\|671034_671793_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	6.2e-61	68.8
AXP54211.1\|671789_672464_-	hypothetical protein	D0UIL6	Aggregatibacter_phage	5.0e-62	55.6
AXP54212.1\|672510_672963_-	hypothetical protein	NA	NA	NA	NA
AXP54213.1\|673006_673213_-	transcriptional regulator	NA	NA	NA	NA
AXP54214.1\|673338_674109_+	XRE family transcriptional regulator	Q76H56	Enterobacteria_phage	1.1e-15	26.3
AXP54215.1\|674337_674850_+	kinase	NA	NA	NA	NA
AXP54216.1\|675028_675388_+\|holin	phage holin, lambda family	NA	NA	NA	NA
AXP54217.1\|675353_675956_+	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	3.9e-58	55.4
AXP54218.1\|675948_676272_+	DUF2570 domain-containing protein	Q7Y5U9	Haemophilus_phage	9.2e-22	56.1
AXP54219.1\|676183_676465_+	hypothetical protein	Q776X1	Haemophilus_phage	1.4e-29	71.1
AXP54220.1\|676466_676814_-	XRE family transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	5.2e-23	57.0
AXP54221.1\|676797_677049_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
AXP54222.1\|677126_677645_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	1.6e-20	39.2
AXP54223.1\|677625_678984_+\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	5.1e-122	52.9
AXP54224.1\|678985_680302_+	DUF1073 domain-containing protein	A0A2K9V3H1	Faecalibacterium_phage	1.8e-47	32.0
AXP54225.1\|680282_681500_+\|head	phage head morphogenesis protein	I3PGT9	Xanthomonas_phage	6.1e-34	36.4
AXP54226.1\|681625_682699_+	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	9.4e-55	40.2
AXP54227.1\|682709_683129_+	hypothetical protein	NA	NA	NA	NA
AXP54228.1\|683136_684138_+	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	3.8e-50	36.6
AXP54229.1\|684140_684329_+	hypothetical protein	NA	NA	NA	NA
AXP54230.1\|684332_684683_+	DUF4054 domain-containing protein	NA	NA	NA	NA
AXP54231.1\|684675_685134_+	hypothetical protein	A0A2I7R754	Vibrio_phage	2.8e-16	35.2
AXP54232.1\|685133_685493_+	hypothetical protein	NA	NA	NA	NA
685325:685341	attR	NA	NA	NA	NA
AXP54233.1\|685494_686004_+	hypothetical protein	NA	NA	NA	NA
AXP54234.1\|685990_687064_+	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	2.2e-64	36.0
AXP54235.1\|687109_687535_+	DUF3277 family protein	A0A2K9V3K6	Faecalibacterium_phage	4.0e-25	45.9
AXP54236.1\|687534_688017_+	hypothetical protein	NA	NA	NA	NA
AXP54237.1\|688201_690583_+\|tail	phage tail protein	K7RVL7	Vibrio_phage	9.1e-34	28.1
AXP54238.1\|690657_691269_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	9.9e-17	43.7
AXP54239.1\|691576_692158_+	hypothetical protein	NA	NA	NA	NA
AXP54240.1\|692154_692469_+	hypothetical protein	NA	NA	NA	NA
AXP54241.1\|692465_693422_+	hypothetical protein	A0A0N9RT60	Pseudomonas_phage	1.8e-33	33.8
AXP54242.1\|693424_694096_+\|plate	phage baseplate protein	A0A0M5M1K7	Salmonella_phage	3.7e-17	35.4
AXP54243.1\|694092_694458_+	hypothetical protein	K4RI30	Pseudomonas_phage	4.1e-10	32.6
AXP54244.1\|694450_695887_+	hypothetical protein	E5AGC3	Erwinia_phage	3.1e-45	29.2
AXP54245.1\|695895_696522_+	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	1.4e-21	37.4
AXP54246.1\|696518_698885_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	7.8e-219	61.0
AXP54247.1\|698896_699502_+	hypothetical protein	Q94MX9	Haemophilus_virus	9.0e-79	80.5
AXP54248.1\|699494_699983_+	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	8.1e-46	56.1
AXP54249.1\|700157_700277_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXP54250.1\|700338_701184_+	hypothetical protein	F6MIM2	Haemophilus_phage	5.6e-119	73.2
AXP54251.1\|701223_701487_-	hypothetical protein	F6MIM3	Haemophilus_phage	1.4e-33	79.1
AXP54252.1\|702166_702892_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
AXP54253.1\|702944_703397_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
AXP54254.1\|703463_704678_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.5e-32	35.5
AXP54255.1\|704701_705118_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.0e-53	80.6
AXP54256.1\|705175_705499_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.4e-24	46.7
AXP54257.1\|705511_706036_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
AXP54258.1\|706086_706773_+	DUF2625 domain-containing protein	NA	NA	NA	NA
AXP54259.1\|706791_708651_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.3e-109	42.3

DBSCAN-SWA_2

752787 : 759230

Staphylococcus_phage(16.67%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP54308.1\|752787_753513_-	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A0N9SHZ9	Staphylococcus_phage	1.1e-25	32.0
AXP54309.1\|753565_754084_-	DUF1295 domain-containing protein	NA	NA	NA	NA
AXP54310.1\|754303_756070_+\|tRNA	aspartate--tRNA ligase	A0A1V0SFI4	Hokovirus	3.2e-07	30.3
AXP54311.1\|756131_757004_+	hypothetical protein	A0A2D1GNG5	Pseudomonas_phage	3.4e-10	26.5
AXP54312.1\|757206_757536_-	hypothetical protein	F6MIM2	Haemophilus_phage	7.9e-37	75.3
AXP54313.1\|758070_758892_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.9e-62	61.2
AXP54314.1\|758876_759230_-	helix-turn-helix domain-containing protein	A0A1B1P776	Bacillus_phage	3.7e-08	37.2

DBSCAN-SWA_3

1272717 : 1323325

Mannheimia_phage(57.14%)

portal,tail,plate,lysis,tRNA,head,protease,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP54734.1\|1272717_1274688_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
AXP54735.1\|1274959_1278400_+	transcription-repair coupling factor	NA	NA	NA	NA
AXP54736.1\|1278452_1279844_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	7.2e-23	31.2
AXP54737.1\|1280037_1280928_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA
AXP54738.1\|1280920_1282234_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
AXP54739.1\|1282521_1283202_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA
AXP54740.1\|1283359_1284436_+	homoserine O-acetyltransferase	NA	NA	NA	NA
AXP54741.1\|1284490_1287133_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	2.1e-103	32.3
AXP54742.1\|1287298_1289062_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
AXP55338.1\|1289198_1289591_-	hypothetical protein	NA	NA	NA	NA
AXP54743.1\|1289910_1290717_+	methyltransferase domain-containing protein	NA	NA	NA	NA
AXP54744.1\|1290768_1291470_+	hydroxyacylglutathione hydrolase	A0A1X9I5D3	Streptococcus_phage	3.3e-08	29.1
AXP54745.1\|1291513_1292374_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
AXP54746.1\|1292486_1294535_-\|tRNA	methionine--tRNA ligase	A0A2K9V939	Bandra_megavirus	2.2e-60	29.3
AXP54747.1\|1294685_1295798_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
AXP54748.1\|1295844_1296507_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
AXP54749.1\|1296611_1297295_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA
AXP54750.1\|1298002_1299013_-\|portal	phage portal protein	Q19UT6	Mannheimia_phage	1.8e-116	60.4
AXP54751.1\|1299022_1300804_-\|terminase	terminase	A0A0M3LRV4	Mannheimia_phage	7.7e-219	65.4
AXP54752.1\|1300968_1301784_+\|capsid	capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	6.9e-66	60.5
AXP54753.1\|1301804_1302854_+\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	2.8e-88	51.3
AXP54754.1\|1302865_1303516_+\|terminase	terminase	Q19US0	Mannheimia_phage	4.1e-45	46.0
AXP54755.1\|1303809_1304316_+\|head	phage head protein	A0A0M3LNL8	Mannheimia_phage	2.8e-33	51.0
AXP54756.1\|1304315_1304525_+\|tail	phage tail protein	NA	NA	NA	NA
AXP54757.1\|1304526_1304748_+\|lysis	lysis protein	NA	NA	NA	NA
AXP54758.1\|1304740_1305259_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
AXP54759.1\|1305243_1305594_+	chemotaxis protein	NA	NA	NA	NA
AXP54760.1\|1305508_1305772_+	hypothetical protein	NA	NA	NA	NA
AXP54761.1\|1305768_1305984_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	1.1e-10	47.9
AXP54762.1\|1305980_1306244_+	hypothetical protein	NA	NA	NA	NA
AXP54763.1\|1306209_1306680_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	7.3e-28	45.3
AXP54764.1\|1306679_1307141_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	5.7e-25	48.2
AXP54765.1\|1307141_1307489_-	hypothetical protein	NA	NA	NA	NA
AXP54766.1\|1307592_1307775_+	hypothetical protein	Q19UR2	Mannheimia_phage	8.8e-06	47.8
AXP54767.1\|1307785_1308097_-	hypothetical protein	NA	NA	NA	NA
AXP54768.1\|1308199_1308373_+	hypothetical protein	Q19UR2	Mannheimia_phage	3.2e-05	53.3
AXP54769.1\|1308350_1308611_-	hypothetical protein	NA	NA	NA	NA
AXP54770.1\|1311708_1312161_+	hypothetical protein	NA	NA	NA	NA
AXP54771.1\|1312258_1312816_+	hypothetical protein	NA	NA	NA	NA
AXP54772.1\|1312824_1313253_+	hypothetical protein	NA	NA	NA	NA
AXP54773.1\|1313356_1313956_+\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	4.2e-44	66.0
AXP54774.1\|1313957_1314296_+\|plate	baseplate assembly protein W	Q19UQ6	Mannheimia_phage	3.4e-19	56.6
AXP54775.1\|1314292_1315207_+\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	5.1e-94	59.5
AXP54776.1\|1315196_1315733_+\|tail	phage tail protein I	M1T2R2	Escherichia_phage	1.6e-50	52.5
AXP54777.1\|1315741_1318264_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	1.8e-253	68.7
AXP54778.1\|1318275_1318875_+	hypothetical protein	Q94MX9	Haemophilus_virus	7.8e-91	89.5
AXP54779.1\|1319133_1320318_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	2.3e-102	48.2
AXP54780.1\|1320321_1320828_+\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	5.4e-53	59.5
AXP54781.1\|1320893_1321193_+\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	1.2e-12	42.9
AXP54782.1\|1321192_1321339_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
AXP54783.1\|1321667_1322105_+	oxidoreductase	A0A0M3LQ18	Mannheimia_phage	9.1e-41	57.3
AXP54784.1\|1322104_1323325_+	phage late control D family protein	R9QBT3	Mannheimia_phage	2.7e-122	57.5

DBSCAN-SWA_4

1420374 : 1432411

Acinetobacter_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP55341.1\|1420374_1421379_-	phosphate ABC transporter substrate-binding protein PstS	A0A222YW41	Synechococcus_phage	1.2e-51	40.5
AXP54860.1\|1421836_1422385_+	non-heme ferritin	NA	NA	NA	NA
AXP54861.1\|1422400_1422898_+	non-heme ferritin	NA	NA	NA	NA
AXP55342.1\|1423130_1423895_+	glycosyltransferase	A7IW34	Paramecium_bursaria_Chlorella_virus	1.5e-14	29.1
AXP54862.1\|1424000_1425557_+	anthranilate synthase component I	A0A0B5J984	Pandoravirus	3.1e-22	32.8
AXP54863.1\|1425569_1426151_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.5e-35	39.4
AXP54864.1\|1426199_1426586_+	tautomerase family protein	NA	NA	NA	NA
AXP54865.1\|1426638_1427640_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.8e-47	35.3
AXP54866.1\|1427677_1429111_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.2e-33	38.0
AXP54867.1\|1429240_1429513_+	hydrogenase maturation factor HybG	NA	NA	NA	NA
AXP54868.1\|1429546_1432411_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.0e-148	37.4

DBSCAN-SWA_5

1441799 : 1471108

Haemophilus_phage(23.33%)

head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP54880.1\|1441799_1441976_-	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1
AXP54881.1\|1442116_1443427_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	5.3e-108	78.3
AXP54882.1\|1443326_1444661_-	DUF1073 domain-containing protein	Q7Y5U6	Haemophilus_phage	2.1e-213	84.2
AXP54883.1\|1445992_1446505_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	1.0e-19	39.2
AXP54884.1\|1446582_1446834_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
AXP54885.1\|1446817_1447165_+	XRE family transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.2e-22	56.1
AXP54886.1\|1447166_1447448_-	hypothetical protein	Q776X1	Haemophilus_phage	8.8e-29	70.0
AXP54887.1\|1447359_1447695_-	DUF2570 domain-containing protein	Q7Y5U9	Haemophilus_phage	9.8e-19	52.1
AXP54888.1\|1447667_1448210_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	3.1e-46	52.0
AXP54889.1\|1448190_1448442_-	hypothetical protein	NA	NA	NA	NA
AXP54890.1\|1448901_1449414_-	kinase	NA	NA	NA	NA
AXP54891.1\|1449822_1450644_-	NYN domain-containing protein	A0A0R6PGY5	Moraxella_phage	3.1e-34	40.9
AXP54892.1\|1450845_1451364_-	hypothetical protein	NA	NA	NA	NA
AXP54893.1\|1451403_1451769_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AXP54894.1\|1451770_1452358_-	recombinase NinG	A0A2I7RAC0	Vibrio_phage	8.3e-37	48.0
AXP54895.1\|1452450_1452867_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.9e-64	86.1
AXP54896.1\|1452903_1453128_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
AXP55343.1\|1453124_1453748_-	replication P	D0UIL4	Aggregatibacter_phage	6.9e-34	42.2
AXP54897.1\|1453762_1454539_-	hypothetical protein	D0UIL5	Aggregatibacter_phage	1.3e-26	62.6
AXP54898.1\|1454540_1454783_-	hypothetical protein	M4NJW2	Sulfitobacter_phage	4.0e-06	41.4
AXP54899.1\|1454939_1455371_+	hypothetical protein	NA	NA	NA	NA
AXP54900.1\|1455383_1455611_-	transcriptional regulator	D0UIL8	Aggregatibacter_phage	1.5e-10	50.8
AXP54901.1\|1455745_1456651_+	helix-turn-helix transcriptional regulator	B6SCU0	Bacteriophage	6.8e-38	40.8
AXP54902.1\|1456666_1457761_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	2.0e-60	36.2
AXP54903.1\|1457760_1458420_+	hypothetical protein	NA	NA	NA	NA
AXP54904.1\|1458376_1459408_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	2.8e-128	66.4
AXP54905.1\|1460418_1461249_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	3.4e-76	52.2
AXP54906.1\|1461753_1462371_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	4.0e-18	46.4
AXP54907.1\|1462460_1462811_+	hypothetical protein	NA	NA	NA	NA
AXP54908.1\|1462807_1463101_+	hypothetical protein	NA	NA	NA	NA
AXP54909.1\|1463112_1464024_+	recombinase	A0A0M3LNU3	Mannheimia_phage	2.4e-115	70.7
AXP54910.1\|1464368_1464980_+	hypothetical protein	Q7Y5X0	Haemophilus_phage	5.8e-33	60.6
AXP54911.1\|1465190_1465835_+	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	6.8e-85	71.4
AXP54912.1\|1465834_1466269_+	single-stranded DNA-binding protein	A0A059WRL7	Vibrio_phage	1.3e-18	36.2
AXP54913.1\|1466331_1467624_+	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	8.8e-07	61.9
AXP54914.1\|1467748_1468645_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	8.4e-57	43.7
AXP54915.1\|1468641_1468887_+	hypothetical protein	NA	NA	NA	NA
AXP54916.1\|1468883_1469243_+	hypothetical protein	NA	NA	NA	NA
AXP54917.1\|1470040_1470688_+	hypothetical protein	A0A0M3LNU4	Mannheimia_phage	1.0e-08	40.0
AXP54918.1\|1470691_1471108_+	hypothetical protein	W0B4E9	Acinetobacter_phage	3.5e-05	39.2

DBSCAN-SWA_6

1710725 : 1719234

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP55145.1\|1710725_1711409_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7
AXP55146.1\|1711401_1711827_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	2.3e-20	42.0
AXP55147.1\|1711827_1712463_+	7-carboxy-7-deazaguanine synthase	S4TZT1	uncultured_phage	8.7e-16	30.3
AXP55351.1\|1712852_1713086_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
AXP55148.1\|1713069_1715253_+	DNA helicase II	A7KV33	Bacillus_phage	1.0e-116	37.7
AXP55149.1\|1715372_1716344_+	ABC transporter permease subunit	NA	NA	NA	NA
AXP55150.1\|1716358_1717246_+	dipeptide ABC transporter permease DppC	NA	NA	NA	NA
AXP55151.1\|1717255_1718248_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-14	30.8
AXP55152.1\|1718250_1719234_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-20	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031686

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection