CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031680	Haemophilus influenzae strain P672-7661 chromosome, complete genome	2 crisprs	cas3,DinG,DEDDh	0	2	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031680_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031680_2

937928-938008

Orphan

Consensus_repeat	Method
CAAAAAAAAAGCGAATCTTTCGATTCGC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP031680_2

>merge|CP031680|2|937928-938008|CRISPRCasFinder
CAAAAAAAAAGCGAATCTTTCGATTCGCCTTGCTTTTAATAATGTATTTTTAACAAAAAAAAAGCGAATCTTTTGATTCGC

>CP031680|2|2|937928-938008|CRISPRCasFinder
CAAAAAAAAAGCGAATCTTTCGATTCGC	CTTGCTTTTAATAATGTATTTTTAA
CAAAAAAAAAGCGAATCTTTTGATTCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP031680.1\|AXP56203.1\|939460_939925_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
CP031680.1\|AXP56199.1\|933554_934421_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP031680.1\|AXP56204.1\|939985_940756_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
CP031680.1\|AXP56209.1\|945991_946633_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
CP031680.1\|AXP56205.1\|941436_942948_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
CP031680.1\|AXP56196.1\|930583_931573_-\|DctP-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270390
CP031680.1\|AXP56202.1\|938036_939158_-\|porin	unknown	unknown	gnl\|CDD\|225744
CP031680.1\|AXP56194.1\|927365_928505_-\|YjhT-family-mutarotase	unknown	unknown	gnl\|CDD\|237617
CP031680.1\|AXP56211.1\|948403_948934_+\|inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|238239
CP031680.1\|AXP56206.1\|943008_944217_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
CP031680.1\|AXP56198.1\|932659_933562_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|235338
CP031680.1\|AXP56208.1\|945395_945983_-\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
CP031680.1\|AXP56195.1\|928668_930519_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
CP031680.1\|AXP56192.1\|925313_925748_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
CP031680.1\|AXP56200.1\|934431_935313_+\|N-acetylneuraminate-lyase	unknown	unknown	gnl\|CDD\|179749
CP031680.1\|AXP56210.1\|946853_948170_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
CP031680.1\|AXP56193.1\|925814_927278_-\|PTS-glucose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|273920
CP031680.1\|AXP56197.1\|931928_932615_+\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|225555
CP031680.1\|AXP56201.1\|936614_937763_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|183010
CP031680.1\|AXP56207.1\|944216_945392_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236772

Protein	Function_ID	Function_description	E-value
CP031680.1\|AXP56203.1\|939460_939925_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	2.01322e-100
CP031680.1\|AXP56199.1\|933554_934421_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.20209e-92
CP031680.1\|AXP56204.1\|939985_940756_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	1.81844e-153
CP031680.1\|AXP56209.1\|945991_946633_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.79987e-139
CP031680.1\|AXP56205.1\|941436_942948_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
CP031680.1\|AXP56196.1\|930583_931573_-\|DctP-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270390	cd13672, PBP2_TRAP_Siap, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent Periplasmic transport system (SiaP); the type 2 periplasmic-binding protein fold. This subfamily represents the periplasmic-binding component of TRAP transport system SiaP, a sialic acid binding virulence factor. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.05541e-142
CP031680.1\|AXP56202.1\|938036_939158_-\|porin	gnl\|CDD\|225744	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane].	4.72443e-49
CP031680.1\|AXP56194.1\|927365_928505_-\|YjhT-family-mutarotase	gnl\|CDD\|237617	PRK14131, PRK14131, N-acetylneuraminate epimerase.	0
CP031680.1\|AXP56211.1\|948403_948934_+\|inorganic-pyrophosphatase	gnl\|CDD\|238239	cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.	5.69911e-67
CP031680.1\|AXP56206.1\|943008_944217_-\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
CP031680.1\|AXP56198.1\|932659_933562_+\|ROK-family-protein	gnl\|CDD\|235338	PRK05082, PRK05082, N-acetylmannosamine kinase; Provisional.	0
CP031680.1\|AXP56208.1\|945395_945983_-\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	2.47013e-86
CP031680.1\|AXP56195.1\|928668_930519_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.92011e-159
CP031680.1\|AXP56192.1\|925313_925748_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	7.95246e-24
CP031680.1\|AXP56200.1\|934431_935313_+\|N-acetylneuraminate-lyase	gnl\|CDD\|179749	PRK04147, PRK04147, N-acetylneuraminate lyase; Provisional.	0
CP031680.1\|AXP56210.1\|946853_948170_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	7.37767e-146
CP031680.1\|AXP56193.1\|925814_927278_-\|PTS-glucose-transporter-subunit-IIBC	gnl\|CDD\|273920	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP031680.1\|AXP56197.1\|931928_932615_+\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|225555	COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism].	8.36118e-135
CP031680.1\|AXP56201.1\|936614_937763_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|183010	PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase; Provisional.	0
CP031680.1\|AXP56207.1\|944216_945392_-\|hypothetical-protein	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	3.78658e-08

>CP031680.1|AXP56201.1|936614_937763_+|N-acetylglucosamine-6-phosphate-deacetylase
MKYALINCVIYTKYDVLRDFAVIINGEIIEAVIPQAELETGIKTIDLQGNNLTAGFIDLQLNGCGGVMFNDQTSVETLEIMQETNLKSGCTSFLPTFITAPDENIKSAVKIMREYLNKHKNQALGLHIEGPYLSIEKKGVHRPEYIREITPEMKDFLCQNGDVITKMTIAAENPTINYTPDFVKAGIIVSVGHSNATYEVAKAAFHKGATFATHLHNAMSPISSGREMGVVGAVLDSDVYTGIIVDGVHINYGNVRIDKKIKGDKLCIVTDSIAAAGAPPELESFTFEGKTIYIKEGRCYDANGTIAGASITMMESIKNAVEYVEIPLAEAIRMSNLYPARAIGVDDRLGSVEKGKIANLAVFTPNYQVIGTVVNGKWKENE
>CP031680.1|AXP56200.1|934431_935313_+|N-acetylneuraminate-lyase
MRDLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGNNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPNHLIWAGFDEMMLPAASLGVDGAIGSTFNVNGVRARQIFELTKAGKLAEALEIQHVTNDLIEGILANGLYLTIKELLKLEGVDAGYCREPMTSKATAEQVAKAKDLKAKFLS
>CP031680.1|AXP56199.1|933554_934421_+|MurR/RpiR-family-transcriptional-regulator
MAKSGNVLNKIGSLYQSLTKSEKKIADTILRSPDLVSQCSLSEIAKHLQVGEATLVRFCRTIGFKGFSEFKLELSIELATKDNQDESILETEIMPSDDSLTIAQKLQTAVANVMEETINLLDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAALLTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGKLQGDSIGTKIAQLFVLDLIYALLVQGEEEIAAQTKQKTLNVILEQRIK
>CP031680.1|AXP56198.1|932659_933562_+|ROK-family-protein
MRCLALDIGGTKIAAAIVKNGEIEQRQQIHTPRENVVEGMHQALGKLLADYEGQFDYVAVASTGIINNGILSALNPKNLGGLAEFPLKASIAKHTDKPIGLLNDAQAATYAEYQLQNSEQVSNFVFVTVSTGVGGGIVLNQILQTGSRGIAGHIGHTLADPNGAICGCGRRGCVEAIASGRAIEAVSSQWKDPCDPKEVFERFRKNDEKATALVERSAKAIANLIADLVISLDIQKIAIGGSVGLAEGYLSLVEKYLQDFPSIYCCEIETAKFGQDAGLIGAAYWVKDVLLDKPEGTIYG
>CP031680.1|AXP56197.1|931928_932615_+|N-acetylmannosamine-6-phosphate-2-epimerase
MSKLSYQEVLSQIQYGLISSCQPVDDGPMDKPEIVSAMAQASVMGGASGLRIEGVDNLKATRPFVNVPIIGIVKRDLPDSPVRITPFLQDIEDLANAGADIIAVDGTKRPRPVDIESAVKKIHEMGCLAMADCSNLEEGLYCKALGFDIVGSTMSGYTGGAVPKEPDYQLVKDLKSAGCFVMAEGRYNTPELAKVAIEIGADCVTVGSALTRLEHIVSWFAHSVKSAR
>CP031680.1|AXP56196.1|930583_931573_-|DctP-family-TRAP-transporter-solute-binding-subunit
MMKLTKLFLATAISLGVSSAVLAADYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALPYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVSFFEKQGVKITHPDLVPFKASMKPYYAEFVKQTGQKGESALKQIEAINP
>CP031680.1|AXP56195.1|928668_930519_-|TRAP-transporter-large-permease-subunit
MKYINKLEEWLGGALFIAIFGILIAQILSRQVFHSPLIWSEELAKLLFVYVGMLGISVAVRKQEHVFIDFLTNLMPEKIRKFTNTFVQLLVFVCIFLFIHFGIRTFNGASFPIDALGGISEKWIFAALPVIAILMMFRFIQAQTLNFKTGKSYLPATFFIISAVILFAILFFAPDWFKVLRISNYIKLGSSSVYVALLVWLIIMFIGVPVGWSLFIATLLYFSMTRWNVVNAATEKLVYSLDSFPLLAVPFYILTGILMNTGGITERIFNFAKALLGHYTGGMGHVNIGASLLFSGMSGSALADAGGLGQLEIKSMRDAGYDDDICGGITAASCIIGPLVPPSIAMIIYGVIANESIAKLFIAGFIPGVLITLALMAMNYRIAKKRGYPRTPKATREQLCSSFKQSFWAILTPLLIIGGIFSGLFSPTESAIVAAAYSVIIGKFVYKELTLKSLFNSCIEAMAITGVVALMIMTVTFFGDMIAREQVAMRVANVFVAVADSPLTVLVMINALLLFLGMFIDALALQFLVLPMLIPIAMQFNIDLIFFGVMTTLNMMIGILTPPMGMALFVVARVGNMSVSTVTKGVLPFLIPVFVTLVLITIFPQIITFVPNLLIP
>CP031680.1|AXP56194.1|927365_928505_-|YjhT-family-mutarotase
MGFIMKLTKTALCTALFATFTFSANAQTYPDLPVGIKGGTGALIGDTVYVGLGSGGDKFYTLDLKDPSAQWKEIATFPGGERNQPVAAAVDGKLYVFGGLQKNEKGELQLVNDAYRYNPSDNTWMKLPTRSPRGLVGSSGASHGDKVYILGGSNLSIFNGFFQDTVAAGEDQAKKDEIAAAYFDQRPEDYFFTTELLSYEPSTNKWRNEGRIPFSGRAGAAFTIQGNDLVVVNGEIKPGLRTAETHQGKFTAKGVQWKNLPDLPAPKGKSQDGLAGALSGYSNGHYLVTGGANFPGSIKQFKEGKLHAHKGLSKAWHNEVYTLNNGKWRIVGELPMNIGYGFSVSYNNKVLLIGGETDGGKALTSVKAISYDGKKLTIE
>CP031680.1|AXP56193.1|925814_927278_-|PTS-glucose-transporter-subunit-IIBC
MSVLSYAQKIGQALMVPVAALPAAALLMGIGYWIDPDGWGANSQLAALLIKSGAAIIDNMGLLFAVGVAFGLAKDKHGSAALSGLVGFYVVTTLLSPAGVAQLQHIDISEVPAAFKKINNQFIGILIGVISAELYNRFYQVELPKALSFFSGKRLVPILVSFVMIAVSFALLYIWPHIFNALVSFGESIKDLGAVGAGIYGFFNRLLIPVGLHHALNSVFWFDVAGINDIPNFLGGAKSIAEGTATVGLTGMYQAGFFPVMMFGLPGAALAIYHCAKPNQKVQVASIMLAGALASFFTGITEPLEFSFMFVAPVLYVLHALLTGISVFIAATMHWIAGFGFSAGLVDMVLSSRNPLAVSWYMLLVQGIVFFAIYYFVFRFAINAFNLKTLGREDKAETAAASTQSNQSREERAVKFIAALGGSENFKTVDACITRLRLTLVDHHNINEDQLKALGSKGNVKLGNDGLQIILGPEAELVAEAIKAKLK
>CP031680.1|AXP56192.1|925313_925748_-|isoprenylcysteine-carboxylmethyltransferase-family-protein
MLFIPPPLLCLFIAIAMYFLPKIASYSVHFSVIVFVISLSFLIALSSVMQFFICKTSINPRDFKGTTKLVSTGIFRFSRNPMYLSLLLILLAWTLWLGNSLAWLGVIVFILVMNHCQIAREEAYLESKFGDEYRRYKQKVRRWL
>CP031680.1|AXP56202.1|938036_939158_-|porin
MKKTLAALIVGAFAASAANAAVVYNNEGTKVELGGRLSVIAEQSSNTLDDQEQQHGALRNQGSRFHIKATHNFGDGFYAQGYLETRLVTDATKEKSDHFGDITTKYAYVTLGNKALGEVKLGRAKTIADGITSAEDKEYGVLDNSKYVPTNGNTVGYTFKGIDGLVLGANYLLAQGRNPTSFTDPAGEVTPQSISNGVQVGAKYDANNIVAAIAFGRTNYRENPKPTPYGISGRKEQVNGVVSTLGYRFSDLGLLVSLDSGYAKTKYHSTTAARKVETKPAYDEKRYFVSPGFQYELMEDTNVYGNFKYERNSVDQGKKTHEQAVLFGVDHKLHKQVLTYIEGAYARTKTNDKGKAEKTEKEKSVGVGLRVYF
>CP031680.1|AXP56203.1|939460_939925_-|ribonuclease-HI
MQKQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLKEPCLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQWVKGHAGHRENEICDELAKKGAGNPTLEDIGYMEE
>CP031680.1|AXP56204.1|939985_940756_+|DNA-polymerase-III-subunit-epsilon
MINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCLWDKRFGNNNVH
>CP031680.1|AXP56205.1|941436_942948_+|ribosome-biogenesis-GTPase-Der
MATPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDGIDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENTDENDRTSEEEQDEWEQEFDFDSEEDTALLDEALEESEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQEVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIGGRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGSNPFAGRKNKLTPNQLRKRKRLMKFIKKAKR
>CP031680.1|AXP56206.1|943008_944217_-|sugar-transporter
MSLYLKAEKIQSWRVLIMACAGFIFNTTEFVPVAMLSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILSVIAWNFWILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGLPIGRIVGQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVGHLDPNFATAVLLVFGFSGIAASLLFNRLYRFAPTKFIVVSMGLLMFSLLLLLFSTEAIIAMFSLVFIWGIGISCIGLSLQMRVLKLAPDATDVATAIYSGIFNAGIGAGALFGNLATTYLGLNEIGYTGAALGLIGLIIFITTHLKYRHTFLLQNNKKITAL
>CP031680.1|AXP56207.1|944216_945392_-|hypothetical-protein
MKKFALIVGIVALAIFSFLYIQLYRVQSAINEQLAQQNIAVQSINLSLFSPALSLENLKTTQFSAQKIEAKFSFLPLLYGNAALHSLNIQQLKLTQNTQNPANVSIEISPFSLKQLLSKKVILNGENHIRIEFNKPIYGKTKTFHFSFHKANLDFSTSESAPLQFVDASLNNQPIGYIETHTAHQQIVTYIKPQCDNDCLAVLKYQQIDNQSAVNFSGKYFPVQRLFALLNLPEMLSGHADFDLDFSFSSSALIQGKLNFLAQNGEILGVNLLDMVAQYFPINYNNDLLKNKELNTRFEQFYLQLSLQQHQLQAEKIELKTPALLGQGKGIIDLNRMECNVDINLNSTDQRYQNLTLPINFFGNCDSPQYKINFTKKFRHQLIDAIKEKLR
>CP031680.1|AXP56208.1|945395_945983_-|dCTP-deaminase
MRLCDTDIERYLDDGIISLTPRPNNDKINGATIDVRLGNSFRVFREHSAPFIDLSGPKEEVSAQLESVMSDEILIPEGEAFFLHPGTLALATTLESVKLPANIIGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFYNSGKLPLALRPNMVIGALSFEVLSGEAKRPYSSRKDAKYKNQQSAVASRIDEDKE
>CP031680.1|AXP56209.1|945991_946633_-|uridine-kinase
MSNPSCIIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMSERIKTNYDHPSSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTNETTHFTPKRIVILEGILLLTDERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQYADIVIPRGGKNRIAINMLKAQILHLLNQK
>CP031680.1|AXP56210.1|946853_948170_-|NCS2-family-permease
MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAGLGSILIGLWANAPMAIGCAISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQAGLPVKLGDFTSFPVMMSLIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMGALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQIINGGKALTSDSISSLFSGLFGTAPAAVYIESAAGTAAGGKTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGFAALVIGRIVSGDIKRLNVGTVIIAIVLVAFYAGGWAI
>CP031680.1|AXP56211.1|948403_948934_+|inorganic-pyrophosphatase
MADFNQILTPGDVDAGIINVVNEIPEGSCHKIEWNRKVAAFQLDRVEPAIFAKPTNYGFIPQTLDEDGDELDVLLITRQPLATGVFLEAKVIGVMKFVDDGEVDDKIVCVPADDRDTGNAYNSLADLPANLIKQIEFHFNNYKALKKPGSTKVTHWGDVEEAKEVIRESIKRWNER

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Crispr_ID: CP031680_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031680_3

1186942-1187042

Orphan

Consensus_repeat	Method
GTGACACCTTCCCCCGCAAGCAGGGGAAGGCAAGATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031680_3

>merge|CP031680|3|1186942-1187042|CRISPRCasFinder
GTGACACCTTCCCCCGCAAGCAGGGGAAGGCAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGACACTTTCCCCCGCAAGCAGGGGAAGGCAAGATTT

>CP031680|3|3|1186942-1187042|CRISPRCasFinder
GTGACACCTTCCCCCGCAAGCAGGGGAAGGCAAGATTT	TCTTTGAGCCTCTTTTTGTCACTTT
GTGACACTTTCCCCCGCAAGCAGGGGAAGGCAAGATTT

Protein	Signature genes	Signature genes Name	Protein_function
CP031680.1\|AXP56422.1\|1194543_1195209_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|234990
CP031680.1\|AXP57005.1\|1180316_1181102_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133038
CP031680.1\|AXP56419.1\|1191754_1192336_-\|electron-transport-complex-subunit-B	unknown	unknown	gnl\|CDD\|235347
CP031680.1\|AXP56420.1\|1192423_1193002_-\|electron-transport-complex-subunit-A	unknown	unknown	gnl\|CDD\|235352
CP031680.1\|AXP57006.1\|1183043_1183733_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
CP031680.1\|AXP56423.1\|1195276_1197412_+\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
CP031680.1\|AXP56418.1\|1189462_1191754_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
CP031680.1\|AXP56409.1\|1179412_1180297_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
CP031680.1\|AXP56413.1\|1184798_1186172_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
CP031680.1\|AXP56411.1\|1182116_1182881_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
CP031680.1\|AXP56424.1\|1197529_1198072_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|224692
CP031680.1\|AXP56410.1\|1181211_1181979_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
CP031680.1\|AXP56412.1\|1183719_1184775_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
CP031680.1\|AXP56415.1\|1187049_1187757_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
CP031680.1\|AXP56421.1\|1193284_1194346_-\|protease	unknown	unknown	gnl\|CDD\|236978
CP031680.1\|AXP56416.1\|1187758_1188382_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
CP031680.1\|AXP56408.1\|1178627_1179401_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
CP031680.1\|AXP56417.1\|1188381_1189458_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
CP031680.1\|AXP56407.1\|1177554_1178616_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340847
CP031680.1\|AXP56414.1\|1186230_1186866_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661

Protein	Function_ID	Function_description	E-value
CP031680.1\|AXP56422.1\|1194543_1195209_+\|DUF2057-domain-containing-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	1.44456e-117
CP031680.1\|AXP57005.1\|1180316_1181102_+\|glycosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	1.16579e-116
CP031680.1\|AXP56419.1\|1191754_1192336_-\|electron-transport-complex-subunit-B	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
CP031680.1\|AXP56420.1\|1192423_1193002_-\|electron-transport-complex-subunit-A	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	3.61742e-111
CP031680.1\|AXP57006.1\|1183043_1183733_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	6.26033e-138
CP031680.1\|AXP56423.1\|1195276_1197412_+\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
CP031680.1\|AXP56418.1\|1189462_1191754_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
CP031680.1\|AXP56409.1\|1179412_1180297_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.20355e-32
CP031680.1\|AXP56413.1\|1184798_1186172_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	7.59859e-165
CP031680.1\|AXP56411.1\|1182116_1182881_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	3.40456e-98
CP031680.1\|AXP56424.1\|1197529_1198072_-\|HAD-family-hydrolase	gnl\|CDD\|224692	COG1778, COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only].	2.89521e-89
CP031680.1\|AXP56410.1\|1181211_1181979_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	5.93491e-84
CP031680.1\|AXP56412.1\|1183719_1184775_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
CP031680.1\|AXP56415.1\|1187049_1187757_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	8.25625e-132
CP031680.1\|AXP56421.1\|1193284_1194346_-\|protease	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
CP031680.1\|AXP56416.1\|1187758_1188382_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	5.95252e-128
CP031680.1\|AXP56408.1\|1178627_1179401_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	1.80874e-53
CP031680.1\|AXP56417.1\|1188381_1189458_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
CP031680.1\|AXP56407.1\|1177554_1178616_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	4.13209e-136
CP031680.1\|AXP56414.1\|1186230_1186866_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	2.07255e-139

>CP031680.1|AXP56414.1|1186230_1186866_-|endonuclease-III
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEIPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPNEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>CP031680.1|AXP56413.1|1184798_1186172_-|sodium-dependent-transporter
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENGGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISTPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLGGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>CP031680.1|AXP56412.1|1183719_1184775_+|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLQINVKKQLGQLALQANIQLPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPIHLRKIGYVFQDARLFPHYTVKGNLRYGMKNVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSVDELLRLADRVVLMENGIVKAYDSVEKIWNSPIFAPWKGENEQSSVLSLPVHLHNPPYKMTALSLGEQALWIHQVPANVGERVRVCIYSSDVSITLQKPEQTSIRNILRGQVAQIEIQDSRVDLAVLVEGNKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>CP031680.1|AXP57006.1|1183043_1183733_+|molybdate-ABC-transporter-permease-subunit
MEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVFSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIVGETQTIPLAMYSFIQTPGAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAD
>CP031680.1|AXP56411.1|1182116_1182881_+|molybdate-ABC-transporter-substrate-binding-protein
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAAEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK
>CP031680.1|AXP56410.1|1181211_1181979_-|LysR-family-transcriptional-regulator
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTVLTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEQPLANQPNQFPVNIKSLNEEEAILQFAESDIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>CP031680.1|AXP57005.1|1180316_1181102_+|glycosyltransferase
MSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGVVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCNYDWVFRMDTDDICVPDRFEKQVAFIEQHPETIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYVANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQCLLSGLFTFALRFGSRLLPTSLLKNLYQTFLRK
>CP031680.1|AXP56409.1|1179412_1180297_+|glycosyltransferase-family-2-protein
MLSIIVPSYNRKAEVPALLESLTQQTSSNFEVIIVDDYSKEKVVVEQRYSFPVTVIRNETNQGAAESRNVGARASKGDWLLFLDDDDRFMPKKCEKVLQVIEQNPDINFIYHPAKCEMVNEGFTYVTQPIEPQEILTERILLANKIGGMPMVAIKKEMFLKIGGLSTALRSLEDYDFLLKLLQEPSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQAHNFDINASYILAYPHIMNLSRKAAKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>CP031680.1|AXP56408.1|1178627_1179401_+|glycosyltransferase-family-25-protein
MLKKYLISLDKDIQRRELFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAYYFRNVTKGEIGCTLSHLSVYQKIVEDNDIAEDSYALVCEDDALFHPNFQQNLTALLSEKLEAEIILLGQSKINNFNDTDLEINYPTTFSFLCKKTGNVNYAFPYKSYFAGTVSYLIKKSAARRFIQQISQNKPFWLADDFLLFEQNFNIRNKVVRPLMVIENPVLISNLESVRGSLSNNLLKKLMKYPLKKIFAIKKNLAN
>CP031680.1|AXP56407.1|1177554_1178616_+|glycosyltransferase-family-4-protein
MKKIGFFIMNIESAGGTERVSINVANALAKQGYDVSFISIGGNKPFFQIDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDNLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRLVRTLSKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIITIANPNTLLPKNKLAKLENKTILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALNIEDSVNFIPRTNDVSFYYESSSIYCLPSQTEGLPLVLIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEQNNIEEMVKGLDLLMNNPELYLQMSDKSRLMSEDYGIEKIIEEWKAIL
>CP031680.1|AXP56415.1|1187049_1187757_-|electron-transport-complex-subunit-E
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLGLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNVKK
>CP031680.1|AXP56416.1|1187758_1188382_-|electron-transport-complex-subunit-RsxG
MGTVKITSRYGILLGFIALLCTAISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQFSTQVK
>CP031680.1|AXP56417.1|1188381_1189458_-|electron-transport-complex-subunit-RsxD
MFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVVLQSALAIVTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYMILLISFPLQMTTWMPPINLLQEPPTFSDTFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQVNVAFLVGGIFLILKRVIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIFFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>CP031680.1|AXP56418.1|1189462_1191754_-|electron-transport-complex-subunit-RsxC
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSPEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISIRVIPTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAIINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQTQPTDAKKAAVAAALARAKAKKLAQANSTSEAILNSQTVENEVEKTKSAVEKTQQNSTALDPKKAAVAAALARAKAKKLAQANSTSEAISNSQTVENEVEKTKSAVEKTQENSTALDPKKAAVAAALARAKAKKLAQTNSTSEAISNSQTAENEVEKTNSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAKTQATLENNQE
>CP031680.1|AXP56419.1|1191754_1192336_-|electron-transport-complex-subunit-B
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>CP031680.1|AXP56420.1|1192423_1193002_-|electron-transport-complex-subunit-A
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSSIALITAGLMSLAFMGFTGLVK
>CP031680.1|AXP56421.1|1193284_1194346_-|protease
MLNDILTGYGIFILEILTILLLILAIVGLIISYRQHNKSKVGELEIKDLSEEFNEQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGETLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKSEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>CP031680.1|AXP56422.1|1194543_1195209_+|DUF2057-domain-containing-protein
MKLRAVVLGLATLCTSTATFAGMVSTSSNLEFLAIDGQKASKSLGKAKTFTVDDTQNHQVVVRLNEIVGSGSNQSLFESNPVIVTFQGNAEDLVISAPVIRNLDSGDKFNQMPNITVKTKSGNAISAKVDVLKQEGLFPSGNVLNDLAEYNASGAAASVSKFAATTVASSVAVAPAGNAKANKGKVVVQGENVAEQQLQYWFQQADKETQTRFLNWAKSHK
>CP031680.1|AXP56423.1|1195276_1197412_+|TIGR01666-family-membrane-protein
MNIRLNTKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPRTQRMLRYYFAAQDIHERTNSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKSYHFNERVERSLLGTLHSFELYKAQHLNDQDELIDIQTLLDNLQSINWQLRQLGQETTDTEQLAQIHTEQITGLKNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKLGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARRNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQEMTAEERTVFSLPYQQLNLITQLLPQFYEYFRKESC
>CP031680.1|AXP56424.1|1197529_1198072_-|HAD-family-hydrolase
MQQKLENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDAGIQVAVLSGRDSPILRRRIADLGIKLYFLGKLEKETACFELMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFTVADAPIYVKNTVDHVLSTNGGKGAFREMSDMILQAQGKSSVFDSAQGFLKSVKNMGQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031680_1	1.1\|801313\|59\|CP031680\|CRISPRCasFinder	801313-801371	59	MH238466	Pasteurella phage AFS-2018a, complete genome	19193-19251	0	1.0
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_CP031644	Bacillus anthracis strain MCCC 1A01412 plasmid p1, complete sequence	51348-51372	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NC_007107	Bacillus cereus E33L plasmid pE33L9, complete sequence	5576-5600	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_CP009969	Bacillus cereus E33L plasmid pBCO_3, complete sequence	1930-1954	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	LR215718	Staphylococcus phage Stab20 genome assembly, chromosome: I	101314-101338	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080583	UNVERIFIED: Staphylococcus phage vB_SauM_EW13, complete genome	64648-64672	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080593	UNVERIFIED: Staphylococcus phage vB_SauM_EW36, complete genome	82643-82667	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080597	UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome	100333-100357	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	KY794643	Staphylococcus phage vB_Sau_S24, complete genome	59383-59407	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080586	UNVERIFIED: Staphylococcus phage vB_SauM_EW2, complete genome	44040-44064	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080594	UNVERIFIED: Staphylococcus phage vB_SauM_EW4, complete genome	98998-99022	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	LR215720	Staphylococcus phage Stab23 genome assembly, chromosome: I	99745-99769	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NC_028765	Staphylococcus phage phiIPLA-RODI, complete genome	96030-96054	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080582	UNVERIFIED: Staphylococcus phage vB_SauM_EW1, complete genome	116901-116925	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	KY794642	Staphylococcus phage vB_Sau_Clo6, complete genome	59911-59935	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_CP033789	Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence	131930-131954	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080592	UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome	39653-39677	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	KX011028	Staphylococcus phage pSco-10, complete genome	35495-35519	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080603	UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome	38018-38042	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MG721208	Staphylococcus phage vB_SauM_LM12, complete genome	46506-46530	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT787017	UNVERIFIED: Staphylococcus phage WV, complete genome	43000-43024	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080596	UNVERIFIED: Staphylococcus phage vB_SauM_EW42, complete genome	102792-102816	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080598	UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome	41678-41702	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MK387337	Vibrio phage ValB1MD, complete genome	185659-185683	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MT080599	UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome	38047-38071	4	0.84
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_KY465818	Staphylococcus aureus subsp. aureus strain CC1 plasmid p140355, complete sequence	39132-39156	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_KM521836	Staphylococcus epidermidis strain 12-00322 plasmid p12-00322, complete sequence	11388-11412	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_KP890694	Staphylococcus xylosus strain 378 plasmid pSX01, complete sequence	32798-32822	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_KR230047	Staphylococcus epidermidis strain SP1 plasmid pSP01, complete sequence	11525-11549	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_KJ922127	Staphylococcus aureus strain 417 plasmid pLRSA417, complete sequence	10234-10258	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	CP030655	Staphylococcus aureus strain ER04448.3 plasmid unnamed1, complete sequence	33838-33862	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NC_010279	Staphylococcus aureus plasmid pV030-8, complete sequence	10396-10420	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	140849-140873	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_CP048644	Staphylococcus aureus strain SR153 plasmid pSR01, complete sequence	34713-34737	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	CP030483	Staphylococcus aureus strain ER03913.3 plasmid unnamed2, complete sequence	31053-31077	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	AP014427	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S28-C14, * SEQUENCING IN PROGRESS *, 3 ordered pieces	27296-27320	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	NZ_KP670395	Staphylococcus schleiferi strain 5909-02 plasmid p5909-02, complete sequence	11785-11809	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	CP013960	Staphylococcus aureus strain V605 plasmid pV605, complete sequence	29147-29171	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	AP014434	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S35-C88, * SEQUENCING IN PROGRESS *, 4 ordered pieces	10056-10080	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	AP013716	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S38-C22, * SEQUENCING IN PROGRESS *	31049-31073	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	AP013443	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7	31198-31222	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MK250029	Prevotella phage Lak-C1, complete genome	200191-200215	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MK250016	Prevotella phage Lak-A1, complete genome	238538-238562	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	MK250019	Prevotella phage Lak-A2, complete genome	159023-159047	5	0.8
CP031680_2	2.1\|937956\|25\|CP031680\|CRISPRCasFinder	937956-937980	25	AP013721	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22A-MedDCM-OCT-S45-C35, * SEQUENCING IN PROGRESS *	29815-29839	5	0.8

1. spacer 1.1|801313|59|CP031680|CRISPRCasFinder matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 0, identity: 1.0

agagcaagagcgtttagctgctgaaaaagcacaaaaagaagctgaagaaaaggcagaaa	CRISPR spacer
agagcaagagcgtttagctgctgaaaaagcacaaaaagaagctgaagaaaaggcagaaa	Protospacer
***********************************************************

2. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_CP031644 (Bacillus anthracis strain MCCC 1A01412 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
tatgattttaataatgtattattaa	Protospacer
. ** *************** ****

3. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NC_007107 (Bacillus cereus E33L plasmid pE33L9, complete sequence) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
cttgtttttaataatttattttttt	Protospacer
****.********** *******

4. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_CP009969 (Bacillus cereus E33L plasmid pBCO_3, complete sequence) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
cttgtttttaataatttattttttt	Protospacer
****.********** *******

5. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to LR215718 (Staphylococcus phage Stab20 genome assembly, chromosome: I) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

6. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080583 (UNVERIFIED: Staphylococcus phage vB_SauM_EW13, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

7. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080593 (UNVERIFIED: Staphylococcus phage vB_SauM_EW36, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

8. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080597 (UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

9. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to KY794643 (Staphylococcus phage vB_Sau_S24, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

10. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080586 (UNVERIFIED: Staphylococcus phage vB_SauM_EW2, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

11. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080594 (UNVERIFIED: Staphylococcus phage vB_SauM_EW4, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

12. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to LR215720 (Staphylococcus phage Stab23 genome assembly, chromosome: I) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaataccgtatttttat	Protospacer
 ************ .*********

13. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NC_028765 (Staphylococcus phage phiIPLA-RODI, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

14. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080582 (UNVERIFIED: Staphylococcus phage vB_SauM_EW1, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

15. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to KY794642 (Staphylococcus phage vB_Sau_Clo6, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

16. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_CP033789 (Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
tatccttttaaaaatgtatttttaa	Protospacer
. * ******* *************

17. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080592 (UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

18. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to KX011028 (Staphylococcus phage pSco-10, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

19. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080603 (UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

20. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MG721208 (Staphylococcus phage vB_SauM_LM12, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

21. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT787017 (UNVERIFIED: Staphylococcus phage WV, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaataccgtatttttat	Protospacer
 ************ .*********

22. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080596 (UNVERIFIED: Staphylococcus phage vB_SauM_EW42, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

23. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080598 (UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

24. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MK387337 (Vibrio phage ValB1MD, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
tatgcttttaataatgaattattaa	Protospacer
. ************** *** ****

25. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MT080599 (UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome) position: , mismatch: 4, identity: 0.84

cttgcttttaataatgtatttttaa	CRISPR spacer
gttgcttttaatactgcatttttat	Protospacer
 ************ **.*******

26. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_KY465818 (Staphylococcus aureus subsp. aureus strain CC1 plasmid p140355, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

27. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_KM521836 (Staphylococcus epidermidis strain 12-00322 plasmid p12-00322, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

28. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_KP890694 (Staphylococcus xylosus strain 378 plasmid pSX01, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

29. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_KR230047 (Staphylococcus epidermidis strain SP1 plasmid pSP01, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

30. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_KJ922127 (Staphylococcus aureus strain 417 plasmid pLRSA417, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

31. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to CP030655 (Staphylococcus aureus strain ER04448.3 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

32. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NC_010279 (Staphylococcus aureus plasmid pV030-8, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

33. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
acatcatttaataatgtatttttaa	Protospacer
 .  * *******************

34. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_CP048644 (Staphylococcus aureus strain SR153 plasmid pSR01, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

35. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to CP030483 (Staphylococcus aureus strain ER03913.3 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

36. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to AP014427 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S28-C14, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
gctgctttaaataatgtattttttg	Protospacer
 .****** ************** .

37. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to NZ_KP670395 (Staphylococcus schleiferi strain 5909-02 plasmid p5909-02, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

38. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to CP013960 (Staphylococcus aureus strain V605 plasmid pV605, complete sequence) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
attgcttttaataatgttttttctg	Protospacer
 **************** ****. .

39. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to AP014434 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S35-C88, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
gctgctttaaataatgtattttttg	Protospacer
 .****** ************** .

40. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to AP013716 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S38-C22, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
gctgctttaaataatgtattttttg	Protospacer
 .****** ************** .

41. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to AP013443 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
gctgctttaaataatgtattttttg	Protospacer
 .****** ************** .

42. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
tctgcttttaataatttattttttt	Protospacer
..************* *******

43. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
tctgcttttaataatttattttttt	Protospacer
..************* *******

44. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
tctgcttttaataatttattttttt	Protospacer
..************* *******

45. spacer 2.1|937956|25|CP031680|CRISPRCasFinder matches to AP013721 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22A-MedDCM-OCT-S45-C35, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.8

cttgcttttaataatgtatttttaa	CRISPR spacer
gctgctttaaataatgtattttttg	Protospacer
 .****** ************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

747949 : 810323

Burkholderia_virus(22.22%)

head,tail,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP56035.1\|747949_749392_+\|tRNA	glutamate--tRNA ligase	A0A222YZ70	Escherichia_phage	1.7e-11	35.2
AXP56036.1\|749692_750409_+	ribonuclease PH	NA	NA	NA	NA
AXP56037.1\|750432_751074_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
AXP56038.1\|751152_752019_+	co-chaperone DjlA	NA	NA	NA	NA
AXP56039.1\|752018_752951_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
AXP56040.1\|752990_753836_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	2.7e-41	39.5
AXP56041.1\|753984_754296_-	DUF2322 family protein	NA	NA	NA	NA
AXP56042.1\|754319_755345_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
AXP56043.1\|755354_757058_-	nitrate/nitrite two-component system sensor histidine kinase NarQ	NA	NA	NA	NA
AXP56044.1\|757099_757699_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AXP56045.1\|757781_758138_+	dihydroneopterin aldolase	NA	NA	NA	NA
AXP56046.1\|758233_760948_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
AXP56047.1\|760959_762654_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
AXP56048.1\|762735_764895_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
AXP56049.1\|765217_766261_-	ADP-heptose--LPS heptosyltransferase I	NA	NA	NA	NA
AXP56050.1\|766337_767063_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
AXP56051.1\|767074_767662_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	3.4e-14	31.2
AXP56991.1\|767758_768655_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
AXP56052.1\|769367_769691_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AXP56053.1\|769880_770510_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
AXP56054.1\|770620_771517_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
AXP56055.1\|771617_772085_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
AXP56056.1\|772253_772706_+	biopolymer transporter ExbB	NA	NA	NA	NA
AXP56057.1\|772709_773153_+	TonB system transport protein ExbD	NA	NA	NA	NA
AXP56058.1\|773162_773957_+	energy transducer TonB	NA	NA	NA	NA
AXP56059.1\|774134_774641_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.9e-42	57.5
AXP56060.1\|774794_777626_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.2
AXP56061.1\|777944_782117_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	1.9e-87	35.0
AXP56062.1\|782509_783004_-	ci repressor-like protein	NA	NA	NA	NA
AXP56063.1\|783385_785287_+\|transposase	transposase	C9DGL1	Escherichia_phage	4.4e-79	34.0
AXP56064.1\|785313_786231_+	DNA transposition protein	A0A2I7S9C3	Vibrio_phage	4.0e-62	43.4
AXP56065.1\|786230_786431_+	hypothetical protein	NA	NA	NA	NA
AXP56066.1\|787537_788074_+	hypothetical protein	F6MIJ5	Haemophilus_phage	3.0e-33	42.8
AXP56067.1\|788745_789102_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXP56068.1\|789101_789635_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
AXP56069.1\|790060_790246_+	hypothetical protein	NA	NA	NA	NA
AXP56070.1\|790266_790623_+	hypothetical protein	NA	NA	NA	NA
AXP56071.1\|790706_791258_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	4.2e-75	68.2
AXP56072.1\|791260_791485_+	hypothetical protein	NA	NA	NA	NA
AXP56992.1\|791621_791858_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	1.8e-19	74.6
AXP56073.1\|791814_792102_+	DUF2681 domain-containing protein	NA	NA	NA	NA
AXP56074.1\|792539_792845_+	hypothetical protein	A0A0C4UR00	Shigella_phage	1.1e-24	57.6
AXP56993.1\|793503_794991_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.6e-161	61.5
AXP56075.1\|794993_796412_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	2.0e-113	45.8
AXP56076.1\|796412_797690_+\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	1.6e-53	47.6
AXP56077.1\|797876_798065_+	hypothetical protein	NA	NA	NA	NA
AXP56078.1\|798267_798768_+	phage virion morphogenesis protein	Q5ZQY1	Pseudomonas_phage	4.3e-18	34.6
AXP56079.1\|799010_800114_+	peptidase	A4JWJ9	Burkholderia_virus	1.2e-65	39.2
AXP56080.1\|800132_801059_+	hypothetical protein	A4JWK0	Burkholderia_virus	3.0e-73	47.9
AXP56081.1\|801124_801442_+	hypothetical protein	NA	NA	NA	NA
AXP56082.1\|801441_801876_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	4.4e-19	36.4
AXP56083.1\|801887_802385_+	hypothetical protein	NA	NA	NA	NA
AXP56084.1\|802394_803780_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	1.8e-98	44.3
AXP56085.1\|803790_804309_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	6.6e-38	45.6
AXP56086.1\|804403_804679_+\|tail	phage tail assembly protein	A0A1B2LRV6	Wolbachia_phage	1.0e-05	36.8
AXP56087.1\|804699_804840_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AXP56088.1\|804855_805089_-	hypothetical protein	NA	NA	NA	NA
AXP56089.1\|805125_807339_+\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	4.8e-69	44.4
AXP56090.1\|807338_808271_+	hypothetical protein	A4JWL1	Burkholderia_virus	1.6e-18	29.9
AXP56091.1\|808251_808482_+	hypothetical protein	Q6QIA3	Burkholderia_phage	4.7e-12	46.3
AXP56994.1\|809371_809791_-	hypothetical protein	A0A0R6PHZ9	Moraxella_phage	6.3e-07	33.6
AXP56092.1\|809837_810323_-\|tail	tail assembly protein	A0A0M3LQ39	Mannheimia_phage	3.3e-07	32.8

DBSCAN-SWA_2

923151 : 1003056

Haemophilus_virus(59.57%)

head,portal,protease,holin,capsid,integrase,tRNA,terminase,tail

attL 918113:918130|attR 960764:960781

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
918113:918130	attL	NA	NA	NA	NA
AXP56190.1\|923151_924384_+\|protease	FtsH protease activity modulator HflK	K4F6D5	Cronobacter_phage	3.2e-06	23.8
AXP56191.1\|924383_925271_+\|protease	protease modulator HflC	A0A2I7S9Z3	Vibrio_phage	1.8e-06	26.6
AXP56192.1\|925313_925748_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
AXP56193.1\|925814_927278_-	PTS glucose transporter subunit IIBC	A0A2I7SAJ6	Vibrio_phage	3.9e-11	48.7
AXP56194.1\|927365_928505_-	YjhT family mutarotase	NA	NA	NA	NA
AXP56195.1\|928668_930519_-	TRAP transporter large permease subunit	NA	NA	NA	NA
AXP56196.1\|930583_931573_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA
AXP56197.1\|931928_932615_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
AXP56198.1\|932659_933562_+	ROK family protein	NA	NA	NA	NA
AXP56199.1\|933554_934421_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AXP56200.1\|934431_935313_+	N-acetylneuraminate lyase	NA	NA	NA	NA
AXP56201.1\|936614_937763_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
AXP56202.1\|938036_939158_-	porin	NA	NA	NA	NA
AXP56203.1\|939460_939925_-	ribonuclease HI	J9Q745	Salmonella_phage	2.9e-45	53.5
AXP56204.1\|939985_940756_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-38	36.1
AXP56205.1\|941436_942948_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
AXP56206.1\|943008_944217_-	sugar transporter	NA	NA	NA	NA
AXP56207.1\|944216_945392_-	hypothetical protein	NA	NA	NA	NA
AXP56208.1\|945395_945983_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	2.8e-24	40.5
AXP56209.1\|945991_946633_-	uridine kinase	A0A1V0SD85	Indivirus	1.5e-28	35.7
AXP56210.1\|946853_948170_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	3.1e-185	80.7
AXP56211.1\|948403_948934_+	inorganic pyrophosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.7e-20	36.9
AXP56212.1\|949393_950407_-\|integrase	site-specific integrase	Q94N03	Haemophilus_virus	7.7e-192	98.5
AXP56213.1\|950406_951285_-	hypothetical protein	NA	NA	NA	NA
AXP56998.1\|951284_951851_-	phage repressor protein CI	P79673	Haemophilus_phage	4.0e-105	98.4
AXP56214.1\|951978_952191_+	DNA-binding protein	P79674	Haemophilus_phage	1.2e-30	100.0
AXP56215.1\|952248_952752_+	hypothetical protein	P79675	Haemophilus_phage	3.0e-80	91.0
AXP56216.1\|952770_953139_+	hypothetical protein	P79676	Haemophilus_phage	3.7e-67	100.0
AXP56217.1\|953138_953324_+	hypothetical protein	Q775F8	Haemophilus_virus	8.0e-31	100.0
AXP56218.1\|953335_953617_+	hypothetical protein	Q775F7	Haemophilus_virus	6.1e-46	100.0
AXP56219.1\|953694_956025_+	replication endonuclease	Q94N00	Haemophilus_virus	0.0e+00	98.3
AXP56220.1\|956036_956339_+	hypothetical protein	Q94MZ9	Haemophilus_virus	2.3e-35	85.1
AXP56221.1\|956348_956846_+	pyrophosphatase	A0A0M3LTD8	Mannheimia_phage	4.5e-28	46.7
AXP56222.1\|956856_957375_+	phage N-6-adenine-methyltransferase	Q94MZ8	Haemophilus_virus	1.0e-94	96.4
AXP56223.1\|957413_957632_-	hypothetical protein	NA	NA	NA	NA
AXP56224.1\|957926_958187_-	transcriptional regulator	Q1I103	Pasteurella_virus	1.4e-25	59.3
AXP56225.1\|958267_959305_-\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	2.2e-197	98.6
AXP56226.1\|959294_961118_-\|terminase	terminase	Q94MZ6	Haemophilus_virus	0.0e+00	97.0
960764:960781	attR	NA	NA	NA	NA
AXP56999.1\|961320_962214_+\|capsid	phage capsid protein	Q94MZ5	Haemophilus_virus	2.2e-142	92.3
AXP56227.1\|962217_963228_+\|capsid	phage major capsid protein, P2 family	Q94MZ4	Haemophilus_virus	2.7e-181	95.8
AXP56228.1\|963241_964087_+\|terminase	terminase	Q94MZ3	Haemophilus_virus	1.5e-148	95.7
AXP56229.1\|964079_964532_+\|head	head stabilization protein	Q94MZ2	Haemophilus_virus	1.1e-70	91.3
AXP56230.1\|964519_965020_+\|tail	phage tail protein	Q94MZ1	Haemophilus_virus	6.8e-56	64.2
AXP56231.1\|964997_965681_+	hypothetical protein	Q1I0Z5	Pasteurella_virus	5.8e-50	51.1
AXP56232.1\|965695_966826_+	DUF2586 domain-containing protein	Q94MY9	Haemophilus_virus	2.3e-216	98.4
AXP56233.1\|966829_967282_+	DUF2597 family protein	Q94MY8	Haemophilus_virus	1.4e-73	97.9
AXP56234.1\|967368_967605_+\|holin	holin	Q94MY7	Haemophilus_virus	1.4e-35	98.7
AXP56235.1\|967597_968158_+	lysozyme	Q94MY6	Haemophilus_virus	4.4e-88	88.8
AXP56236.1\|968142_968490_+	hypothetical protein	Q94MY5	Haemophilus_virus	5.7e-54	97.4
AXP56237.1\|968449_968680_+	hypothetical protein	NA	NA	NA	NA
AXP56238.1\|968681_968990_+	hypothetical protein	Q775G2	Haemophilus_virus	3.5e-47	99.0
AXP56239.1\|969178_971248_+\|tail	phage tail tape measure protein	Q94MY4	Haemophilus_virus	1.7e-278	73.8
AXP56240.1\|971251_971587_+	DUF2590 family protein	Q94MY3	Haemophilus_virus	2.3e-52	99.1
AXP56241.1\|971579_972749_+	hypothetical protein	Q94MY2	Haemophilus_virus	8.9e-216	97.6
AXP56242.1\|972758_973283_+\|tail	phage tail protein	Q94MY1	Haemophilus_virus	4.8e-97	100.0
AXP56243.1\|973312_976081_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	0.0e+00	79.0
AXP56244.1\|976089_976692_+	hypothetical protein	Q94MX9	Haemophilus_virus	3.4e-86	82.5
AXP56245.1\|976733_977501_+	hypothetical protein	Q94MX8	Haemophilus_virus	3.1e-132	97.3
AXP56246.1\|977487_978051_+	hypothetical protein	Q94MX7	Haemophilus_virus	2.1e-77	93.0
AXP56247.1\|978047_979649_+	hypothetical protein	Q94MX6	Haemophilus_virus	1.3e-281	97.9
AXP56248.1\|980646_981204_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AXP56249.1\|981304_981907_-	peroxiredoxin C	NA	NA	NA	NA
AXP56250.1\|982043_983231_+	cystathionine beta-lyase	NA	NA	NA	NA
AXP56251.1\|983708_985070_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
AXP56252.1\|985166_985673_+	hypothetical protein	NA	NA	NA	NA
AXP56253.1\|985725_986781_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AXP56254.1\|986958_987744_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	A0A291ATS8	Pandoravirus	1.4e-18	29.5
AXP56255.1\|987728_988838_-	murein transglycosylase A	NA	NA	NA	NA
AXP56256.1\|989232_991368_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	9.7e-19	29.9
AXP56257.1\|998210_1000448_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
AXP56258.1\|1000802_1001432_-	glutathione S-transferase family protein	NA	NA	NA	NA
AXP56259.1\|1001766_1003056_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.9e-94	52.1

DBSCAN-SWA_3

1390307 : 1395832

Mannheimia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP56590.1\|1390307_1390559_-	phage antirepressor Ant	A0A0M3LQ72	Mannheimia_phage	2.3e-28	72.7
AXP56591.1\|1391208_1391379_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AXP56592.1\|1391728_1392700_-	SppA protein	NA	NA	NA	NA
AXP56593.1\|1392754_1393411_-	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	2.1e-65	57.9
AXP56594.1\|1393541_1393748_+	XRE family transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	1.9e-17	67.7
AXP56595.1\|1393768_1394065_+	hypothetical protein	Q7Y5W3	Haemophilus_phage	3.4e-31	70.4
AXP56596.1\|1394112_1394781_+	hypothetical protein	D0UIL6	Aggregatibacter_phage	3.4e-55	52.1
AXP56597.1\|1395655_1395832_+	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1

DBSCAN-SWA_4

1509847 : 1518837

Haemophilus_phage(28.57%)

integrase

attL 1502794:1502813|attR 1524791:1524810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1502794:1502813	attL	NA	NA	NA	NA
AXP56691.1\|1509847_1510933_-	peptide chain release factor 1	G0YKC3	Acinetobacter_phage	6.3e-06	52.8
AXP56692.1\|1511019_1511556_-	elongation factor P hydroxylase	NA	NA	NA	NA
AXP56693.1\|1511829_1512531_-	hypothetical protein	B7SDN5	Haemophilus_phage	5.7e-77	62.1
AXP57011.1\|1512542_1512704_-	DUF935 family protein	B7SDN1	Haemophilus_phage	1.5e-12	66.7
AXP56694.1\|1512702_1513179_+	pyruvate kinase	NA	NA	NA	NA
AXP56695.1\|1513192_1513495_+	hypothetical protein	NA	NA	NA	NA
AXP56696.1\|1513505_1514006_+	hypothetical protein	B3GVZ0	Streptococcus_phage	1.7e-22	40.2
AXP56697.1\|1514005_1514290_+	hypothetical protein	A0A0M3LP12	Mannheimia_phage	1.1e-18	51.1
AXP56698.1\|1514320_1515322_-\|integrase	site-specific integrase	A0A0M3LRG1	Mannheimia_phage	1.0e-111	62.2
AXP56699.1\|1515852_1517289_+	pyruvate kinase	NA	NA	NA	NA
AXP56700.1\|1517322_1518837_+	replicative DNA helicase	O80281	Escherichia_phage	6.2e-169	68.5
1524791:1524810	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1643246 : 1651760

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP56806.1\|1643246_1643930_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.6e-54	50.2
AXP56807.1\|1643922_1644348_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	1.3e-20	42.7
AXP56808.1\|1644348_1644984_+	7-carboxy-7-deazaguanine synthase	S4TZT1	uncultured_phage	8.7e-16	30.3
AXP56809.1\|1645378_1645612_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
AXP56810.1\|1645595_1647779_+	DNA helicase II	A7KV33	Bacillus_phage	4.8e-114	37.1
AXP56811.1\|1647898_1648870_+	ABC transporter permease subunit	NA	NA	NA	NA
AXP56812.1\|1648884_1649772_+	peptide ABC transporter permease	NA	NA	NA	NA
AXP56813.1\|1649781_1650774_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-14	30.8
AXP56814.1\|1650776_1651760_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-20	32.8

DBSCAN-SWA_6

1782493 : 1791561

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP56937.1\|1782493_1784338_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.6e-22	29.6
AXP56938.1\|1784461_1784740_-	copper chaperone	NA	NA	NA	NA
AXP57019.1\|1784748_1785066_-	hypothetical protein	NA	NA	NA	NA
AXP56939.1\|1785085_1786195_-	transglutaminase family protein	NA	NA	NA	NA
AXP56940.1\|1786448_1788869_+	twin-arginine translocation signal domain-containing protein	A0A077SK27	Escherichia_phage	2.4e-223	50.3
AXP56941.1\|1788879_1789497_+	dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	7.5e-73	57.3
AXP56942.1\|1789498_1790338_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	3.2e-18	31.7
AXP56943.1\|1790449_1791061_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.0e-21	32.5
AXP56944.1\|1791060_1791561_+	ferredoxin-type protein NapF	A0A077SLP0	Escherichia_phage	3.2e-13	32.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031680

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection