CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031682	Haemophilus influenzae strain P665-7858 chromosome, complete genome	1 crisprs	cas3,DinG,DEDDh,WYL	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031682_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031682_1

1243382-1243477

Orphan

Consensus_repeat	Method
ACCTTCCCCCGCAAGCAGGGGAAGGCAAGATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031682_1

>merge|CP031682|1|1243382-1243477|CRISPRCasFinder
ACCTTCCCCCGCAAGCAGGGGAAGGCAAGATTTTCTTTGCGCCTCTTTTTGTCACTTTGTGATACCTTCCCTCGCAAGCAGGGGAAGGCAAGATTT

>CP031682|1|1|1243382-1243477|CRISPRCasFinder
ACCTTCCCCCGCAAGCAGGGGAAGGCAAGATTT	TCTTTGCGCCTCTTTTTGTCACTTTGTGAT
ACCTTCCCTCGCAAGCAGGGGAAGGCAAGATTT

Protein	Signature genes	Signature genes Name	Protein_function
CP031682.1\|AXP61550.1\|1245897_1248357_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
CP031682.1\|AXP62175.1\|1239477_1240167_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
CP031682.1\|AXP61539.1\|1233988_1235050_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340847
CP031682.1\|AXP61552.1\|1249026_1249605_-\|electron-transport-complex-subunit-A	unknown	unknown	gnl\|CDD\|235352
CP031682.1\|AXP61541.1\|1235846_1236731_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
CP031682.1\|AXP61547.1\|1243484_1244192_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
CP031682.1\|AXP61546.1\|1242664_1243300_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
CP031682.1\|AXP61542.1\|1237645_1238413_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
CP031682.1\|AXP61555.1\|1251881_1254038_+\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
CP031682.1\|AXP61556.1\|1254135_1254678_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|224692
CP031682.1\|AXP61553.1\|1249889_1250951_-\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
CP031682.1\|AXP61548.1\|1244193_1244817_-\|electron-transport-complex-subunit-G	unknown	unknown	gnl\|CDD\|179350
CP031682.1\|AXP61549.1\|1244816_1245893_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
CP031682.1\|AXP61540.1\|1235061_1235835_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
CP031682.1\|AXP61551.1\|1248357_1248939_-\|electron-transport-complex-subunit-B	unknown	unknown	gnl\|CDD\|235347
CP031682.1\|AXP61543.1\|1238550_1239315_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
CP031682.1\|AXP61545.1\|1241232_1242606_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
CP031682.1\|AXP62174.1\|1236750_1237536_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133038
CP031682.1\|AXP61554.1\|1251148_1251814_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|234990
CP031682.1\|AXP61544.1\|1240153_1241209_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993

Protein	Function_ID	Function_description	E-value
CP031682.1\|AXP61550.1\|1245897_1248357_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
CP031682.1\|AXP62175.1\|1239477_1240167_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.95484e-138
CP031682.1\|AXP61539.1\|1233988_1235050_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	1.90909e-136
CP031682.1\|AXP61552.1\|1249026_1249605_-\|electron-transport-complex-subunit-A	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	5.78855e-111
CP031682.1\|AXP61541.1\|1235846_1236731_+\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	4.01152e-34
CP031682.1\|AXP61547.1\|1243484_1244192_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	1.34363e-129
CP031682.1\|AXP61546.1\|1242664_1243300_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	2.07255e-139
CP031682.1\|AXP61542.1\|1237645_1238413_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	3.62795e-83
CP031682.1\|AXP61555.1\|1251881_1254038_+\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
CP031682.1\|AXP61556.1\|1254135_1254678_-\|HAD-family-hydrolase	gnl\|CDD\|224692	COG1778, COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only].	7.00579e-89
CP031682.1\|AXP61553.1\|1249889_1250951_-\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
CP031682.1\|AXP61548.1\|1244193_1244817_-\|electron-transport-complex-subunit-G	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.08851e-127
CP031682.1\|AXP61549.1\|1244816_1245893_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
CP031682.1\|AXP61540.1\|1235061_1235835_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	4.8443e-54
CP031682.1\|AXP61551.1\|1248357_1248939_-\|electron-transport-complex-subunit-B	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
CP031682.1\|AXP61543.1\|1238550_1239315_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	8.76868e-99
CP031682.1\|AXP61545.1\|1241232_1242606_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.99093e-164
CP031682.1\|AXP62174.1\|1236750_1237536_+\|glycosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	8.7449e-116
CP031682.1\|AXP61554.1\|1251148_1251814_+\|DUF2057-domain-containing-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	2.42314e-115
CP031682.1\|AXP61544.1\|1240153_1241209_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0

>CP031682.1|AXP61546.1|1242664_1243300_-|endonuclease-III
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEIPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPNEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>CP031682.1|AXP61545.1|1241232_1242606_-|sodium-dependent-transporter
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENGGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISAPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLGGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>CP031682.1|AXP61544.1|1240153_1241209_+|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLQINVKKQLGQLALQANIQVPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPTHLRKIGYVFQDARLFPHYTVKGNLRYGMKNVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSVDELLRLADRVVLMENGIVKAYDSVEKIWNSPIFAPWKGENEQSSVLALPVHLHNPPYKMTALSLGEQVLWIHQVPANVGERVRVCIYSSDVSITLQKPEQTSIRNILRGQVAQIEIQDSRVDLAVLVEGHKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>CP031682.1|AXP62175.1|1239477_1240167_+|molybdate-ABC-transporter-permease-subunit
MEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVFSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIAGETQTIPLAMYSFIQTPGAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAD
>CP031682.1|AXP61543.1|1238550_1239315_+|molybdate-ABC-transporter-substrate-binding-protein
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAEEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK
>CP031682.1|AXP61542.1|1237645_1238413_-|LysR-family-transcriptional-regulator
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTALTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEKPLENQSNQFPVNIKSLNEEEAILQFAESDIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>CP031682.1|AXP62174.1|1236750_1237536_+|glycosyltransferase
MSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGTVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCDYDWVFRMDTDDICVPERFEKQVAFIEQHPETIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYMANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQGLLSGLFTFALRFGSRLLPTSLLKKLYQTFLRK
>CP031682.1|AXP61541.1|1235846_1236731_+|glycosyltransferase
MLSIIVPSYNRKAEVPALLESLTQQTSSNFEVIIVDDCSKDPVEVTQSYPFVVKVIRNETNQGAAESRNVGARASKGDWLLFLDDDDRFMPEKCEKILQVIEQNPDINFIYHPAKCEMVNEGFTYVTQPIEPQEISTERILLANKIGGMPMVAIKKEMFFKIGGLSTALRSLEDYDFLLKLLQESSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQARNFDINASYILAYPHIMNLSRKATKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>CP031682.1|AXP61540.1|1235061_1235835_+|glycosyltransferase-family-25-protein
MLKKYLISLDKDIQRRELFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAHYGRSVTKGEIGCTLSHLSVYQKIVEDNDIAENSYTLVCEDDALFHPNFQQNLTALLAEKIESEIVLVGQSKINDFNDFDLEINYPTTFSFLYKKTGNVNYAFPYKSYFAGTVGYLIKKSAARRFIQQISQNKPFWLADDFLLFEQNFNIRNKVIRPLMVIENPVLISNLESVRGSLSNNLFKKLMKYPLKKIFAIKKNLAN
>CP031682.1|AXP61539.1|1233988_1235050_+|glycosyltransferase-family-4-protein
MKKIGFFIMNIESAGGTERVSINVVNALAKQGYDVSFISIGGNKPFFQVDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDTLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRFVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIISIANPNTLLPKNKLAKWENKTVLSVGHLFSYKGFDYLLKAWQVLAKNHPNWNLKIVGSGEEEENLKNLAKALNIEDSVNFIPRTNDVSFYYENSSIYCLPSQTEGLPLVLIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEKNSIEEMVNGLDLLMNNPELYQQMSDKSRVMSEDYGIEKIIEEWKAIL
>CP031682.1|AXP61547.1|1243484_1244192_-|electron-transport-complex-subunit-E
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLGLATMFVLTCTNTVISLFRQYILKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNIKK
>CP031682.1|AXP61548.1|1244193_1244817_-|electron-transport-complex-subunit-G
MGTVKITSRYGILLGFIALLCTIISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQLSTQVK
>CP031682.1|AXP61549.1|1244816_1245893_-|electron-transport-complex-subunit-RsxD
MFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVVLQSALAIVTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDTFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLILKRVIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>CP031682.1|AXP61550.1|1245897_1248357_-|electron-transport-complex-subunit-RsxC
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRYLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSPEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISIRVIPTKYPSGATKQLIYLLTGIEVPSGARSSSIGVLMQNVGTMFAIKRAIINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPKAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANETESRQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQTQPTDAKKAAVAAALARAKAKKLAQTNSTSEAISNAQTAENEVEKTKSAVEKTQENSTALDAKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNAQTVENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTVENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAKTQATLENNQE
>CP031682.1|AXP61551.1|1248357_1248939_-|electron-transport-complex-subunit-B
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>CP031682.1|AXP61552.1|1249026_1249605_-|electron-transport-complex-subunit-A
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>CP031682.1|AXP61553.1|1249889_1250951_-|protease-SohB
MLNDILTGYGIFILEILTILLLILAIVGLIISYRQHNKSKVGELEIKDLSEEFNKQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGETLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKPEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTILGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>CP031682.1|AXP61554.1|1251148_1251814_+|DUF2057-domain-containing-protein
MKLRAVVLGLATLCTSTATFAGMVSTSSNLEFLAIDGQKASKSLGKAKTFTVDDTQSHQVVVRLNEIVGSGSNQSLFESNPVIVTFQGNGEDLVISAPAIRNLDSGDKFNQMPNITVKTKSGNAISAKVDVLKQEGLFPSGNVLNDLAEYNASGAAASVSKFTATTSANSMVAAPAGNAKANKGKVLVQGENVAEQQLQYWFQQADKETQTRFLNWAKSHK
>CP031682.1|AXP61555.1|1251881_1254038_+|TIGR01666-family-membrane-protein
MNIRLNAKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPLTQRMLRYYFAAQDIHERANSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKPYHFNERVERALLGTLHSFDLYRAQHLNDQDELIDIQTLLDNLQSINWQLRQLAQDTTVTEQLAQIHTEQITGLKNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKLGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARRNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQEMTAEERAVFSLPYQQLNLITQLLPQFYEYFKKEINCQSVGAL
>CP031682.1|AXP61556.1|1254135_1254678_-|HAD-family-hydrolase
MQQKLENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVADAPIYVKNAVDHVLSTHGGKGAFREMSDMILQAQGKSSVFDTAQGFLKSVKNMGQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

168821 : 177802

Vibrio_phage(16.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP60547.1\|168821_169838_+	nucleoid-associated protein	A0A1V0E8C0	Vibrio_phage	1.7e-74	45.2
AXP60548.1\|169903_170317_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXP60549.1\|170370_171054_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.0e-34	40.5
AXP60550.1\|171530_172502_-	elongation factor P--(R)-beta-lysine ligase	A0A2K9L3L6	Tupanvirus	1.2e-27	27.1
AXP60551.1\|172712_174512_+	fumarate reductase (quinol) flavoprotein subunit	M1HTN0	Paramecium_bursaria_Chlorella_virus	6.5e-16	24.9
AXP60552.1\|174504_175275_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
AXP60553.1\|175285_175696_+	fumarate reductase subunit FrdC	NA	NA	NA	NA
AXP60554.1\|175707_176052_+	fumarate reductase subunit D	NA	NA	NA	NA
AXP60555.1\|176203_177340_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.6e-121	57.0
AXP62151.1\|177385_177802_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.2e-50	66.4

DBSCAN-SWA_2

650865 : 705123

Haemophilus_phage(15.22%)

head,tRNA,tail,integrase,plate,terminase,holin

attL 645747:645763|attR 681840:681856

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
645747:645763	attL	NA	NA	NA	NA
AXP60988.1\|650865_651891_-\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	9.6e-57	35.4
AXP60989.1\|651788_652103_-	DNA-binding protein	NA	NA	NA	NA
AXP60990.1\|652229_652517_-	hypothetical protein	NA	NA	NA	NA
AXP60991.1\|652520_653003_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.5e-31	46.1
AXP60992.1\|653051_654326_-	DNA (cytosine-5-)-methyltransferase	A0A2I7QRH3	Vibrio_phage	7.7e-96	46.9
AXP60993.1\|654333_654693_-	hypothetical protein	NA	NA	NA	NA
AXP60994.1\|654689_654926_-	hypothetical protein	NA	NA	NA	NA
AXP60995.1\|654922_655492_-	hypothetical protein	NA	NA	NA	NA
AXP60996.1\|655661_656630_-	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	1.4e-33	61.5
AXP60997.1\|657287_657905_-	exonuclease	A0A0M3LPU0	Mannheimia_phage	1.8e-87	76.7
AXP60998.1\|657898_658681_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	1.0e-87	61.9
AXP60999.1\|658682_659588_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	2.8e-52	43.8
AXP61000.1\|659601_659895_-	hypothetical protein	NA	NA	NA	NA
AXP61001.1\|659891_660236_-	hypothetical protein	NA	NA	NA	NA
AXP61002.1\|660323_661355_-	endonuclease	D0UIK6	Aggregatibacter_phage	4.1e-39	79.8
AXP61003.1\|661344_661596_-	hypothetical protein	NA	NA	NA	NA
AXP61004.1\|661715_662027_-	hypothetical protein	NA	NA	NA	NA
AXP61005.1\|662411_662597_-	hypothetical protein	NA	NA	NA	NA
AXP61006.1\|662747_663896_-	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	1.7e-30	36.2
AXP61007.1\|663906_664767_-	hypothetical protein	NA	NA	NA	NA
AXP61008.1\|664829_665195_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AXP61009.1\|665196_665784_-	recombinase NinG	A0A2I7RAC0	Vibrio_phage	3.7e-37	48.5
AXP61010.1\|665872_666292_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	3.7e-55	74.6
AXP61011.1\|666366_666933_-	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	1.9e-83	78.3
AXP61012.1\|666929_667565_-	replication P	A0A1P8DTF3	Proteus_phage	1.6e-17	33.3
AXP61013.1\|667549_668308_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	6.2e-61	68.8
AXP61014.1\|668304_668979_-	hypothetical protein	D0UIL6	Aggregatibacter_phage	5.0e-62	55.6
AXP61015.1\|669025_669478_-	hypothetical protein	NA	NA	NA	NA
AXP61016.1\|669521_669728_-	transcriptional regulator	NA	NA	NA	NA
AXP61017.1\|669853_670624_+	XRE family transcriptional regulator	Q76H56	Enterobacteria_phage	1.1e-15	26.3
AXP61018.1\|670852_671365_+	kinase	NA	NA	NA	NA
AXP61019.1\|671543_671903_+\|holin	phage holin, lambda family	NA	NA	NA	NA
AXP61020.1\|671868_672471_+	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	3.9e-58	55.4
AXP61021.1\|672463_672787_+	DUF2570 domain-containing protein	Q7Y5U9	Haemophilus_phage	9.2e-22	56.1
AXP61022.1\|672698_672980_+	hypothetical protein	Q776X1	Haemophilus_phage	1.4e-29	71.1
AXP61023.1\|672981_673329_-	XRE family transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	5.2e-23	57.0
AXP61024.1\|673312_673564_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
AXP61025.1\|673641_674160_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	1.6e-20	39.2
AXP61026.1\|674140_675499_+\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	5.1e-122	52.9
AXP61027.1\|675500_676817_+	DUF1073 domain-containing protein	A0A2K9V3H1	Faecalibacterium_phage	1.8e-47	32.0
AXP61028.1\|676797_678015_+\|head	phage head morphogenesis protein	I3PGT9	Xanthomonas_phage	6.1e-34	36.4
AXP61029.1\|678140_679214_+	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	9.4e-55	40.2
AXP61030.1\|679224_679644_+	hypothetical protein	NA	NA	NA	NA
AXP61031.1\|679651_680653_+	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	3.8e-50	36.6
AXP61032.1\|680655_680844_+	hypothetical protein	NA	NA	NA	NA
AXP61033.1\|680847_681198_+	DUF4054 domain-containing protein	NA	NA	NA	NA
AXP61034.1\|681190_681649_+	hypothetical protein	A0A2I7R754	Vibrio_phage	2.8e-16	35.2
AXP61035.1\|681648_682008_+	hypothetical protein	NA	NA	NA	NA
681840:681856	attR	NA	NA	NA	NA
AXP61036.1\|682009_682519_+	hypothetical protein	NA	NA	NA	NA
AXP61037.1\|682505_683579_+	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	2.2e-64	36.0
AXP61038.1\|683624_684050_+	DUF3277 family protein	A0A2K9V3K6	Faecalibacterium_phage	4.0e-25	45.9
AXP61039.1\|684049_684532_+	hypothetical protein	NA	NA	NA	NA
AXP61040.1\|684716_687098_+\|tail	phage tail protein	K7RVL7	Vibrio_phage	9.1e-34	28.1
AXP61041.1\|687172_687784_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	9.9e-17	43.7
AXP61042.1\|688091_688673_+	hypothetical protein	NA	NA	NA	NA
AXP61043.1\|688669_688984_+	hypothetical protein	NA	NA	NA	NA
AXP61044.1\|688980_689937_+	hypothetical protein	A0A2K9V3M6	Faecalibacterium_phage	1.7e-31	30.0
AXP61045.1\|689939_690611_+\|plate	phage baseplate protein	A0A0M5M1K7	Salmonella_phage	3.7e-17	35.4
AXP61046.1\|690607_690973_+	hypothetical protein	K4RI30	Pseudomonas_phage	4.1e-10	32.6
AXP61047.1\|690965_692402_+	hypothetical protein	E5AGC3	Erwinia_phage	3.1e-45	29.2
AXP61048.1\|692410_693037_+	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	1.4e-21	37.4
AXP61049.1\|693033_695355_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	3.7e-290	76.9
AXP61050.1\|695366_695975_+	hypothetical protein	Q94MX9	Haemophilus_virus	1.3e-82	82.5
AXP61051.1\|695967_696456_+	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	8.1e-46	56.1
AXP61052.1\|696630_696750_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXP61053.1\|696811_697657_+	hypothetical protein	F6MIM2	Haemophilus_phage	5.6e-119	73.2
AXP61054.1\|697696_697960_-	hypothetical protein	F6MIM3	Haemophilus_phage	1.4e-33	79.1
AXP61055.1\|698639_699365_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
AXP61056.1\|699417_699870_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
AXP61057.1\|699936_701151_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.5e-32	35.5
AXP61058.1\|701174_701591_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.0e-53	80.6
AXP61059.1\|701647_701971_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.4e-24	46.7
AXP61060.1\|701983_702508_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
AXP61061.1\|702558_703245_+	DUF2625 domain-containing protein	NA	NA	NA	NA
AXP61062.1\|703263_705123_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.8e-109	42.5

DBSCAN-SWA_3

975043 : 1068855

Haemophilus_virus(58.82%)

tRNA,head,integrase,tail,portal,terminase,holin,capsid

attL 968527:968586|attR 1047171:1047252

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
968527:968586	attL	NA	NA	NA	NA
AXP61299.1\|975043_975829_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	A0A291ATS8	Pandoravirus	1.5e-17	28.9
AXP61300.1\|975813_976923_-	murein transglycosylase A	NA	NA	NA	NA
AXP61301.1\|977317_979453_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	9.7e-19	29.9
AXP61302.1\|986243_988475_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
AXP61303.1\|988835_989465_-	glutathione S-transferase family protein	NA	NA	NA	NA
AXP61304.1\|989799_991089_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	52.1
AXP61305.1\|991442_991673_+	heat-shock protein	NA	NA	NA	NA
AXP61306.1\|991626_992370_-	threonine/serine exporter	NA	NA	NA	NA
AXP61307.1\|992497_993760_-	HlyC/CorC family transporter	NA	NA	NA	NA
AXP61308.1\|994040_995429_+	signal recognition particle protein	NA	NA	NA	NA
AXP61309.1\|995485_996241_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
AXP61310.1\|996541_998437_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	4.9e-115	36.4
AXP61311.1\|998515_998860_+	ArsC family reductase	NA	NA	NA	NA
AXP61312.1\|998887_1000021_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AXP61313.1\|1000022_1000703_+	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA
AXP62165.1\|1000737_1001793_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-25	28.6
AXP61314.1\|1001794_1003315_-	ABC transporter permease subunit	NA	NA	NA	NA
AXP61315.1\|1003432_1004431_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
AXP61316.1\|1005064_1005820_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXP61317.1\|1005908_1006028_-	DeoR family transcriptional regulator	NA	NA	NA	NA
AXP61318.1\|1006349_1007609_+	GntP family permease	NA	NA	NA	NA
AXP61319.1\|1007617_1008754_+	glycerate kinase	W6LM47	Streptococcus_phage	3.8e-54	44.1
AXP61320.1\|1008793_1009507_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AXP61321.1\|1009830_1012278_+	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
AXP61322.1\|1012290_1013235_+	homoserine kinase	NA	NA	NA	NA
AXP61323.1\|1013277_1014555_+	threonine synthase	NA	NA	NA	NA
AXP61324.1\|1015119_1016133_-\|integrase	site-specific integrase	Q94N03	Haemophilus_virus	3.1e-193	99.4
AXP61325.1\|1016135_1016435_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXP61326.1\|1016427_1016658_-	hypothetical protein	NA	NA	NA	NA
AXP61327.1\|1016694_1016901_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
AXP61328.1\|1016901_1017135_-	DUF4177 domain-containing protein	A0A0A7NPW2	Enterobacteria_phage	4.1e-16	56.6
AXP61329.1\|1017154_1017577_-	hypothetical protein	NA	NA	NA	NA
AXP62166.1\|1017622_1017997_-	chromosome partitioning protein ParA	NA	NA	NA	NA
AXP61330.1\|1018165_1018357_+	hypothetical protein	NA	NA	NA	NA
AXP61331.1\|1018353_1018593_+	DNA-binding protein	P79674	Haemophilus_phage	4.4e-05	36.5
AXP61332.1\|1018647_1019151_+	hypothetical protein	P79675	Haemophilus_phage	4.8e-78	89.2
AXP61333.1\|1019169_1019538_+	hypothetical protein	P79676	Haemophilus_phage	3.7e-67	100.0
AXP61334.1\|1019537_1019723_+	hypothetical protein	Q775F8	Haemophilus_virus	8.0e-31	100.0
AXP61335.1\|1019734_1020016_+	hypothetical protein	Q775F7	Haemophilus_virus	1.8e-45	98.9
AXP61336.1\|1020066_1020327_+	hypothetical protein	Q775F6	Haemophilus_virus	3.6e-45	100.0
AXP61337.1\|1020329_1022657_+	replication endonuclease	Q94N00	Haemophilus_virus	0.0e+00	99.4
AXP61338.1\|1022668_1022980_+	hypothetical protein	Q94MZ9	Haemophilus_virus	2.9e-49	100.0
AXP61339.1\|1022989_1023508_+	phage N-6-adenine-methyltransferase	Q94MZ8	Haemophilus_virus	2.3e-99	99.4
AXP61340.1\|1023605_1023782_+	addiction module toxin, HicA family	D6R431	Bacillus_phage	4.5e-15	67.8
AXP61341.1\|1023810_1024212_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	2.3e-70	100.0
AXP62167.1\|1024239_1024500_-	transcriptional regulator	Q1I103	Pasteurella_virus	1.6e-21	53.6
AXP61342.1\|1024580_1025618_-\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	3.9e-199	99.7
AXP61343.1\|1025607_1027431_-\|terminase	terminase	Q94MZ6	Haemophilus_virus	0.0e+00	100.0
AXP61344.1\|1027634_1028528_+\|capsid	phage capsid protein	Q94MZ5	Haemophilus_virus	4.5e-151	99.7
AXP61345.1\|1028530_1029541_+\|capsid	phage major capsid protein, P2 family	Q94MZ4	Haemophilus_virus	1.4e-180	95.8
AXP61346.1\|1029554_1030400_+\|terminase	terminase	Q94MZ3	Haemophilus_virus	4.4e-148	95.3
AXP61347.1\|1030392_1030845_+\|head	head stabilization protein	Q94MZ2	Haemophilus_virus	9.4e-73	93.3
AXP61348.1\|1030832_1031315_+\|tail	phage tail protein	Q94MZ1	Haemophilus_virus	1.3e-56	64.8
AXP61349.1\|1031311_1032037_+	phage virion morphogenesis protein	Q1I0Z5	Pasteurella_virus	1.9e-19	33.2
AXP61350.1\|1032316_1033447_+	DUF2586 domain-containing protein	Q94MY9	Haemophilus_virus	4.5e-217	98.7
AXP61351.1\|1033450_1033903_+	DUF2597 family protein	Q94MY8	Haemophilus_virus	1.4e-73	97.9
AXP61352.1\|1033989_1034226_+\|holin	holin	Q94MY7	Haemophilus_virus	1.4e-35	98.7
AXP61353.1\|1034218_1034779_+	lysozyme	Q94MY6	Haemophilus_virus	4.4e-88	88.8
AXP61354.1\|1034763_1035111_+	hypothetical protein	Q94MY5	Haemophilus_virus	5.7e-54	97.4
AXP61355.1\|1035070_1035301_+	hypothetical protein	NA	NA	NA	NA
AXP61356.1\|1035302_1035611_+	hypothetical protein	Q775G2	Haemophilus_virus	3.5e-47	99.0
AXP61357.1\|1035799_1037929_+\|tail	phage tail tape measure protein	Q94MY4	Haemophilus_virus	0.0e+00	99.4
AXP61358.1\|1037932_1038268_+	DUF2590 family protein	Q94MY3	Haemophilus_virus	2.3e-52	99.1
AXP61359.1\|1038260_1039430_+	hypothetical protein	Q94MY2	Haemophilus_virus	6.8e-216	97.9
AXP61360.1\|1039439_1039964_+\|tail	phage tail protein	Q94MY1	Haemophilus_virus	4.8e-97	100.0
AXP61361.1\|1039993_1042738_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	0.0e+00	93.3
AXP61362.1\|1042749_1043349_+	hypothetical protein	Q94MX9	Haemophilus_virus	2.3e-98	95.5
AXP61363.1\|1043390_1044158_+	hypothetical protein	Q94MX8	Haemophilus_virus	3.1e-132	97.3
AXP61364.1\|1044144_1044708_+	hypothetical protein	Q94MX7	Haemophilus_virus	2.1e-77	93.0
AXP61365.1\|1044704_1046306_+	hypothetical protein	Q94MX6	Haemophilus_virus	1.3e-281	97.9
AXP62168.1\|1047459_1048605_+	methionine biosynthesis PLP-dependent protein	A0A141ZJM2	Faustovirus	1.6e-12	26.5
1047171:1047252	attR	NA	NA	NA	NA
AXP61366.1\|1048617_1049613_+	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	6.4e-66	39.9
AXP61367.1\|1049732_1050056_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	9.8e-16	42.4
AXP61368.1\|1050011_1050380_-	hypothetical protein	NA	NA	NA	NA
AXP61369.1\|1050390_1050648_-	hypothetical protein	NA	NA	NA	NA
AXP61370.1\|1050709_1051498_-	TatD family deoxyribonuclease	NA	NA	NA	NA
AXP61371.1\|1051552_1052062_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.6e-12	32.4
AXP61372.1\|1052164_1053544_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	8.7e-53	29.7
AXP61373.1\|1053702_1054566_-	acyl-CoA thioesterase II	NA	NA	NA	NA
AXP61374.1\|1054683_1056807_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	2.0e-258	62.5
AXP61375.1\|1057088_1057529_+	hypothetical protein	NA	NA	NA	NA
AXP61376.1\|1057521_1057866_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
AXP61377.1\|1057878_1058505_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXP62169.1\|1058575_1059466_+	NAD(+) kinase	NA	NA	NA	NA
AXP61378.1\|1059578_1061255_+	DNA repair protein RecN	NA	NA	NA	NA
AXP61379.1\|1061275_1064221_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
AXP61380.1\|1064227_1065163_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
AXP61381.1\|1065170_1067072_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.4e-69	32.0
AXP61382.1\|1067072_1068371_-	LysM peptidoglycan-binding domain-containing protein	A0A0N6W8I1	Bacillus_phage	2.8e-13	24.5
AXP61383.1\|1068378_1068855_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA

DBSCAN-SWA_4

1116610 : 1188924

Haemophilus_phage(43.18%)

tRNA,head,transposase,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP61426.1\|1116610_1118035_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
AXP61427.1\|1118104_1118764_-	uracil-DNA glycosylase	A0A1R3T3N6	Sphenicid_alphaherpesvirus	3.5e-52	47.2
AXP61428.1\|1119021_1119405_+	autonomous glycyl radical cofactor GrcA	A0A1W5N098	Cronobacter_phage	4.9e-30	67.0
AXP61429.1\|1119572_1121369_+	elongation factor 4	A0A2K9L2P9	Tupanvirus	6.5e-24	42.6
AXP61430.1\|1121377_1122427_+	signal peptidase I	NA	NA	NA	NA
AXP61431.1\|1122428_1123112_+	ribonuclease 3	M4QMG4	Micromonas_pusilla_virus	1.2e-23	35.6
AXP61432.1\|1123108_1124017_+	GTPase Era	NA	NA	NA	NA
AXP61433.1\|1124079_1125072_-	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA	NA	NA	NA
AXP61434.1\|1125177_1125582_+	DNA polymerase III subunit psi	NA	NA	NA	NA
AXP61435.1\|1125584_1126025_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA
AXP61436.1\|1126063_1126972_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
AXP61437.1\|1127041_1127758_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
AXP61438.1\|1127750_1128689_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
AXP61439.1\|1128690_1131117_-	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
AXP61440.1\|1131165_1131777_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
AXP61441.1\|1132047_1132860_+	sulfurtransferase FdhD	NA	NA	NA	NA
AXP61442.1\|1133117_1133582_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
AXP61443.1\|1133597_1134386_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
AXP61444.1\|1134422_1136246_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	1.8e-45	24.7
AXP61445.1\|1136415_1137435_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AXP61446.1\|1137685_1138312_+	guanylate kinase	K4JYM5	Abalone_herpesvirus	2.6e-20	36.2
AXP61447.1\|1138374_1138641_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
AXP61448.1\|1138713_1140828_+	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.5e-11	38.8
AXP61449.1\|1140824_1142906_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
AXP61450.1\|1142935_1143745_+	glutamate racemase	NA	NA	NA	NA
AXP61451.1\|1143956_1145102_+	L-lactate dehydrogenase	NA	NA	NA	NA
AXP61452.1\|1151733_1151997_+	hypothetical protein	F6MIM3	Haemophilus_phage	1.2e-32	76.7
AXP61453.1\|1152035_1152881_-	hypothetical protein	F6MIM2	Haemophilus_phage	4.3e-119	72.5
AXP61454.1\|1152942_1153062_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXP61455.1\|1153237_1153738_-	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	7.7e-52	62.9
AXP61456.1\|1153734_1154337_-	hypothetical protein	Q94MX9	Haemophilus_virus	2.1e-96	93.0
AXP62172.1\|1154348_1155905_-\|tail	phage tail protein	Q94MY0	Haemophilus_virus	8.3e-153	68.3
AXP62173.1\|1156160_1156754_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	3.5e-67	63.5
AXP61457.1\|1156753_1157818_-\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	2.8e-123	64.3
AXP61458.1\|1157832_1158183_-	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	3.2e-44	74.1
AXP61459.1\|1158252_1158888_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	4.7e-62	57.8
AXP61460.1\|1158897_1160022_-\|tail	phage tail protein	F6MIL3	Haemophilus_phage	4.6e-145	71.8
AXP61461.1\|1160011_1161346_-	phage morphogenesis protein	F6MIL2	Haemophilus_phage	5.4e-108	45.1
AXP61462.1\|1161348_1163637_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	3.7e-93	33.6
AXP61463.1\|1163683_1163890_-	hypothetical protein	NA	NA	NA	NA
AXP61464.1\|1163904_1164246_-	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	1.8e-20	50.5
AXP61465.1\|1164245_1164617_-\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	4.0e-37	65.0
AXP61466.1\|1164626_1166042_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	1.9e-156	62.4
AXP61467.1\|1166034_1166217_-	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	1.8e-11	63.0
AXP61468.1\|1166188_1166851_-	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	1.2e-44	45.0
AXP61469.1\|1166834_1167266_-	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	1.6e-37	61.6
AXP61470.1\|1167275_1167611_-	hypothetical protein	B7SDP3	Haemophilus_phage	5.8e-19	54.9
AXP61471.1\|1167646_1168567_-\|head	head protein	A0A0M3LQ11	Mannheimia_phage	2.3e-110	62.6
AXP61472.1\|1168566_1169613_-	I protein	B7SDN9	Haemophilus_phage	3.8e-69	45.7
AXP61473.1\|1169894_1170320_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	3.9e-28	48.2
AXP61474.1\|1170526_1171876_-\|head	phage head morphogenesis protein	A0A0C4UQY9	Shigella_phage	2.1e-43	30.0
AXP61475.1\|1171862_1173473_-	DUF935 domain-containing protein	B7SDN1	Haemophilus_phage	1.3e-185	63.9
AXP61476.1\|1173484_1175131_-	hypothetical protein	B7SDN0	Haemophilus_phage	3.8e-249	77.8
AXP61477.1\|1175266_1175770_-	DUF1804 family protein	F6MIK6	Haemophilus_phage	4.1e-45	51.8
AXP61478.1\|1175771_1176038_-	hypothetical protein	NA	NA	NA	NA
AXP61479.1\|1176037_1176295_-	hypothetical protein	NA	NA	NA	NA
AXP61480.1\|1176418_1176676_-	DUF2681 domain-containing protein	NA	NA	NA	NA
AXP61481.1\|1176675_1176966_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	1.4e-16	61.3
AXP61482.1\|1177119_1177626_-	hypothetical protein	A0A0M3LSH2	Mannheimia_phage	9.9e-55	65.4
AXP61483.1\|1177705_1178134_-	mor transcription activator family protein	F6MIJ8	Haemophilus_phage	4.3e-27	42.3
AXP61484.1\|1178220_1179120_-	hypothetical protein	NA	NA	NA	NA
AXP61485.1\|1179173_1179575_-	regulatory protein GemA	A0A0M3LP80	Mannheimia_phage	2.4e-19	43.8
AXP61486.1\|1179834_1180074_-	hypothetical protein	NA	NA	NA	NA
AXP61487.1\|1180183_1180432_-	hypothetical protein	NA	NA	NA	NA
AXP61488.1\|1180435_1180996_-	hypothetical protein	A0A0M3LP85	Mannheimia_phage	2.5e-14	25.9
AXP61489.1\|1181098_1181329_-	DUF551 domain-containing protein	NA	NA	NA	NA
AXP61490.1\|1182500_1182674_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
AXP61491.1\|1182827_1183037_-	ANR family transcriptional regulator	NA	NA	NA	NA
AXP61492.1\|1183221_1183839_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	3.6e-67	59.6
AXP61493.1\|1183839_1184031_-	HTH domain-containing protein	F6MII8	Haemophilus_phage	9.5e-11	57.6
AXP61494.1\|1184039_1184336_-	hypothetical protein	NA	NA	NA	NA
AXP61495.1\|1184346_1185228_-	helix-turn-helix domain-containing protein	A0A0M3LP72	Mannheimia_phage	9.9e-119	75.8
AXP61496.1\|1185279_1185696_-	hypothetical protein	NA	NA	NA	NA
AXP61497.1\|1185688_1187671_-\|transposase	transposase	A0A0M3LPN5	Mannheimia_phage	7.8e-188	54.8
AXP61498.1\|1187714_1187993_-	DNA-binding protein	F6MII4	Haemophilus_phage	5.8e-17	58.8
AXP61499.1\|1188219_1188924_+	helix-turn-helix transcriptional regulator	A0A0M3LP76	Mannheimia_phage	2.7e-18	37.9

DBSCAN-SWA_5

1461868 : 1476268

Haemophilus_phage(43.75%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP61716.1\|1461868_1462291_-	HD domain-containing protein	D0UIJ3	Aggregatibacter_phage	5.3e-54	76.4
AXP61717.1\|1462293_1462512_-	hypothetical protein	Q776X0	Haemophilus_phage	9.2e-34	97.2
AXP61718.1\|1463838_1465170_-	DUF1073 domain-containing protein	Q7Y5U6	Haemophilus_phage	1.7e-210	84.0
AXP61719.1\|1465171_1466515_-\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	4.1e-124	53.5
AXP61720.1\|1466501_1467014_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	1.0e-19	39.2
AXP61721.1\|1467080_1467338_+	XRE family transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	6.0e-16	66.2
AXP61722.1\|1467531_1467855_-	DUF2570 domain-containing protein	Q7Y5U9	Haemophilus_phage	5.9e-21	54.2
AXP61723.1\|1467847_1468450_-	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	2.5e-57	54.4
AXP61724.1\|1468418_1468775_-\|holin	phage holin, lambda family	NA	NA	NA	NA
AXP61725.1\|1468967_1469495_-	hypothetical protein	NA	NA	NA	NA
AXP61726.1\|1469505_1470099_-	hypothetical protein	NA	NA	NA	NA
AXP61727.1\|1470275_1470644_-	antitermination protein	Q7Y5V5	Haemophilus_phage	1.0e-37	63.4
AXP61728.1\|1470883_1471606_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	2.7e-61	68.3
AXP61729.1\|1471602_1472268_-	hypothetical protein	D0UIL6	Aggregatibacter_phage	3.2e-53	52.1
AXP61730.1\|1472316_1472613_-	hypothetical protein	Q7Y5W3	Haemophilus_phage	2.0e-31	70.4
AXP61731.1\|1472633_1472840_-	XRE family transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	1.5e-17	67.7
AXP61732.1\|1472970_1473627_+	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	2.1e-65	58.4
AXP61733.1\|1473681_1474029_+	hypothetical protein	NA	NA	NA	NA
AXP61734.1\|1474013_1474541_+	hypothetical protein	NA	NA	NA	NA
AXP61735.1\|1474556_1474991_+	hypothetical protein	Q7Y5W7	Haemophilus_phage	4.0e-28	53.8
AXP61736.1\|1475325_1475496_-	DUF1508 domain-containing protein	NA	NA	NA	NA
AXP61737.1\|1475510_1475732_+	hypothetical protein	NA	NA	NA	NA
AXP62179.1\|1476058_1476268_+	hypothetical protein	D0UIM2	Aggregatibacter_phage	3.2e-20	70.1

DBSCAN-SWA_6

1593807 : 1604839

Mannheimia_phage(42.86%)

integrase

attL 1586746:1586765|attR 1610795:1610814

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1586746:1586765	attL	NA	NA	NA	NA
AXP61860.1\|1593807_1594890_-	peptide chain release factor 1	G0YKC3	Acinetobacter_phage	6.2e-06	52.8
AXP61861.1\|1595004_1596027_-	sel1 repeat family protein	NA	NA	NA	NA
AXP61862.1\|1596524_1597061_-	elongation factor P hydroxylase	NA	NA	NA	NA
AXP61863.1\|1597093_1597231_-	hypothetical protein	NA	NA	NA	NA
AXP61864.1\|1597277_1597472_-	hypothetical protein	NA	NA	NA	NA
AXP61865.1\|1597434_1597569_-	G protein	NA	NA	NA	NA
AXP61866.1\|1597692_1598352_-	hypothetical protein	B7SDN5	Haemophilus_phage	2.1e-60	57.7
AXP62181.1\|1598411_1598573_-	DUF935 family protein	B7SDN1	Haemophilus_phage	1.7e-13	68.6
AXP61867.1\|1598571_1599042_+	pyruvate kinase	NA	NA	NA	NA
AXP61868.1\|1599060_1599252_+	hypothetical protein	NA	NA	NA	NA
AXP61869.1\|1599262_1599472_+	hypothetical protein	NA	NA	NA	NA
AXP61870.1\|1599484_1600006_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	1.6e-28	41.8
AXP61871.1\|1600005_1600290_+	hypothetical protein	A0A0M3LQ35	Mannheimia_phage	1.1e-18	51.1
AXP61872.1\|1600320_1601322_-\|integrase	site-specific integrase	A0A0M3LRG1	Mannheimia_phage	9.2e-113	62.5
AXP61873.1\|1601854_1603291_+	pyruvate kinase	NA	NA	NA	NA
AXP61874.1\|1603324_1604839_+	replicative DNA helicase	O80281	Escherichia_phage	4.7e-169	68.3
1610795:1610814	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1710988 : 1719502

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP61968.1\|1710988_1711672_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.1e-53	49.8
AXP61969.1\|1711664_1712090_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	7.8e-21	42.7
AXP61970.1\|1712090_1712726_+	7-carboxy-7-deazaguanine synthase	S4TZT1	uncultured_phage	8.7e-16	30.3
AXP61971.1\|1713120_1713354_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
AXP61972.1\|1713337_1715521_+	DNA helicase II	A7KV33	Bacillus_phage	3.0e-116	37.6
AXP61973.1\|1715640_1716612_+	ABC transporter permease subunit	NA	NA	NA	NA
AXP61974.1\|1716626_1717514_+	ABC transporter permease subunit	NA	NA	NA	NA
AXP61975.1\|1717523_1718516_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.7e-15	30.9
AXP61976.1\|1718518_1719502_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-20	32.8

DBSCAN-SWA_8

1848612 : 1860714

Escherichia_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP62095.1\|1848612_1850457_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.6e-22	29.6
AXP62096.1\|1850581_1850860_-	copper chaperone	NA	NA	NA	NA
AXP62187.1\|1850868_1851186_-	hypothetical protein	NA	NA	NA	NA
AXP62097.1\|1851205_1852315_-	transglutaminase family protein	NA	NA	NA	NA
AXP62098.1\|1852568_1854989_+	twin-arginine translocation signal domain-containing protein	A0A077SK27	Escherichia_phage	7.0e-223	50.3
AXP62099.1\|1854999_1855617_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.0e-73	58.3
AXP62100.1\|1855618_1856458_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	1.1e-18	31.1
AXP62101.1\|1856569_1857181_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.7e-21	32.5
AXP62102.1\|1857180_1857681_+	ferredoxin-type protein NapF	A0A077SLP0	Escherichia_phage	3.9e-11	30.3
AXP62103.1\|1859712_1860714_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	2.3e-26	30.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage