Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP031663 Staphylococcus aureus strain 82 plasmid pPS00051.1A.2, complete sequence 0 crisprs NA 0 0 0 0
CP031662 Staphylococcus aureus strain 82 plasmid pPS00051.1A.1, complete sequence 0 crisprs csa3 0 0 0 0
CP031661 Staphylococcus aureus strain 82 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,WYL 7 3 9 0

Results visualization

1. CP031661
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_1 375218-375318 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_2 619765-619857 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_3 776660-776740 Unclear NA
1 spacers
cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_4 825213-825294 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_5 874068-874350 Orphan NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_6 1007249-1007336 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_7 2088467-2088555 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_8 2215309-2215459 Orphan NA
2 spacers
csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031661_9 2339538-2339731 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 2780580-2780608 0 1.0
CP031661_4 4.1|825237|34|CP031661|CRISPRCasFinder 825237-825270 34 CP031661.1 1299837-1299870 0 1.0
CP031661_4 4.1|825237|34|CP031661|CRISPRCasFinder 825237-825270 34 CP031661.1 1388279-1388312 0 1.0
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 336737-336765 1 0.966
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 1791070-1791098 1 0.966
CP031661_5 5.1|874098|26|CP031661|CRT 874098-874123 26 CP031661.1 874042-874067 1 0.962
CP031661_5 5.3|874212|26|CP031661|CRT 874212-874237 26 CP031661.1 782088-782113 1 0.962
CP031661_5 5.3|874212|26|CP031661|CRT 874212-874237 26 CP031661.1 1946441-1946466 1 0.962
CP031661_9 9.2|2339617|36|CP031661|CRT 2339617-2339652 36 CP031661.1 1791063-1791098 1 0.972
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 825279-825307 2 0.931
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 893738-893766 2 0.931
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 1612353-1612381 2 0.931
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 1970630-1970658 2 0.931
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 CP031661.1 2531205-2531233 2 0.931
CP031661_5 5.1|874098|26|CP031661|CRT 874098-874123 26 CP031661.1 745192-745217 2 0.923
CP031661_5 5.1|874098|26|CP031661|CRT 874098-874123 26 CP031661.1 1091679-1091704 2 0.923
CP031661_5 5.1|874098|26|CP031661|CRT 874098-874123 26 CP031661.1 2780492-2780517 2 0.923
CP031661_5 5.1|874098|26|CP031661|CRT 874098-874123 26 CP031661.1 2780548-2780573 2 0.923
CP031661_5 5.3|874212|26|CP031661|CRT 874212-874237 26 CP031661.1 336603-336628 2 0.923
CP031661_9 9.1|2339561|33|CP031661|CRT 2339561-2339593 33 CP031661.1 782068-782100 2 0.939
CP031661_9 9.1|2339561|33|CP031661|CRT 2339561-2339593 33 CP031661.1 1299792-1299824 2 0.939
CP031661_9 9.1|2339561|33|CP031661|CRT 2339561-2339593 33 CP031661.1 1388325-1388357 2 0.939
CP031661_9 9.1|2339561|33|CP031661|CRT 2339561-2339593 33 CP031661.1 1946421-1946453 2 0.939
CP031661_9 9.1|2339561|33|CP031661|CRT 2339561-2339593 33 CP031661.1 2615235-2615267 2 0.939
CP031661_9 9.2|2339617|36|CP031661|CRT 2339617-2339652 36 CP031661.1 1612353-1612388 2 0.944
CP031661_9 9.2|2339617|36|CP031661|CRT 2339617-2339652 36 CP031661.1 1970630-1970665 2 0.944
CP031661_9 9.3|2339676|33|CP031661|CRT 2339676-2339708 33 CP031661.1 782068-782100 2 0.939
CP031661_9 9.3|2339676|33|CP031661|CRT 2339676-2339708 33 CP031661.1 1299792-1299824 2 0.939
CP031661_9 9.3|2339676|33|CP031661|CRT 2339676-2339708 33 CP031661.1 1946421-1946453 2 0.939
CP031661_9 9.3|2339676|33|CP031661|CRT 2339676-2339708 33 CP031661.1 2615235-2615267 2 0.939

1. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 2780580-2780608, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

2. spacer 4.1|825237|34|CP031661|CRISPRCasFinder matches to position: 1299837-1299870, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 4.1|825237|34|CP031661|CRISPRCasFinder matches to position: 1388279-1388312, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

4. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 336737-336765, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

5. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 1791070-1791098, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

6. spacer 5.1|874098|26|CP031661|CRT matches to position: 874042-874067, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

7. spacer 5.3|874212|26|CP031661|CRT matches to position: 782088-782113, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

8. spacer 5.3|874212|26|CP031661|CRT matches to position: 1946441-1946466, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 9.2|2339617|36|CP031661|CRT matches to position: 1791063-1791098, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

10. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 825279-825307, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

11. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 893738-893766, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

12. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 1612353-1612381, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

13. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 1970630-1970658, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

14. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to position: 2531205-2531233, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

15. spacer 5.1|874098|26|CP031661|CRT matches to position: 745192-745217, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

16. spacer 5.1|874098|26|CP031661|CRT matches to position: 1091679-1091704, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

17. spacer 5.1|874098|26|CP031661|CRT matches to position: 2780492-2780517, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

18. spacer 5.1|874098|26|CP031661|CRT matches to position: 2780548-2780573, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

19. spacer 5.3|874212|26|CP031661|CRT matches to position: 336603-336628, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

20. spacer 9.1|2339561|33|CP031661|CRT matches to position: 782068-782100, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

21. spacer 9.1|2339561|33|CP031661|CRT matches to position: 1299792-1299824, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

22. spacer 9.1|2339561|33|CP031661|CRT matches to position: 1388325-1388357, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

23. spacer 9.1|2339561|33|CP031661|CRT matches to position: 1946421-1946453, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 9.1|2339561|33|CP031661|CRT matches to position: 2615235-2615267, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

25. spacer 9.2|2339617|36|CP031661|CRT matches to position: 1612353-1612388, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

26. spacer 9.2|2339617|36|CP031661|CRT matches to position: 1970630-1970665, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

27. spacer 9.3|2339676|33|CP031661|CRT matches to position: 782068-782100, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

28. spacer 9.3|2339676|33|CP031661|CRT matches to position: 1299792-1299824, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

29. spacer 9.3|2339676|33|CP031661|CRT matches to position: 1946421-1946453, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 9.3|2339676|33|CP031661|CRT matches to position: 2615235-2615267, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP031661_5 5.4|874268|53|CP031661|CRT 874268-874320 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
CP031661_5 5.3|874212|26|CP031661|CRT 874212-874237 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
CP031661_3 3.1|776686|29|CP031661|CRISPRCasFinder 776686-776714 29 MN693281 Marine virus AFVG_25M371, complete genome 6448-6476 7 0.759

1. spacer 5.4|874268|53|CP031661|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 5.3|874212|26|CP031661|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

3. spacer 3.1|776686|29|CP031661|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 713883 : 721703 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 733675 : 748294 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 992473 : 1000946 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1441299 : 1528852 104 Staphylococcus_phage(74.68%) holin,terminase,tail,head,lysis,tRNA,protease,portal,capsid,transposase NA
DBSCAN-SWA_5 1583975 : 1592287 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1661425 : 1670468 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1796238 : 1877707 74 Staphylococcus_phage(89.06%) protease,tRNA NA
DBSCAN-SWA_8 2023706 : 2070179 69 Staphylococcus_phage(98.55%) holin,terminase,tail,head,protease,portal,capsid NA
DBSCAN-SWA_9 2076518 : 2092527 24 Staphylococcus_phage(71.43%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage