CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031741	Stenotrophomonas sp. G4 chromosome, complete genome	16 crisprs	NA	2	3	0	0

Cas Category Instructions

Results visualization

1. CP031741

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CRISPR-Cas detection and classification

Crispr_ID: CP031741_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_1

120636-120740

Orphan

Consensus_repeat	Method
CAGGTAGATCCACGCCATGCGTGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_1

>merge|CP031741|1|120636-120740|CRISPRCasFinder
CAGGTAGATCCACGCCATGCGTGGAGGAAACGCGCGGACGGCCCGCCGCCAACCGAGGTGGGCATCTACCCTGCACGGCATCAGTAGATCCACGCCATGCGTGGA

>CP031741|1|1|120636-120740|CRISPRCasFinder
CAGGTAGATCCACGCCATGCGTGGA	GGAAACGCGCGGACGGCCCGCCGCCAACCGAGGTGGGCATCTACCCTGCACGGCA
TCAGTAGATCCACGCCATGCGTGGA

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Crispr_ID: CP031741_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_2

353548-353647

Orphan

Consensus_repeat	Method
TGCCGGCCGCTGGCCGGTAACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_2

>merge|CP031741|2|353548-353647|CRISPRCasFinder
TGCCGGCCGCTGGCCGGTAACCTCCAAACGCACGGCAACGCCGGCCGCTGGCCGGCAACCCCCAAACGCATGGTAGTGCCGGCCGCTGGCCGGCAACCTC

>CP031741|2|2|353548-353647|CRISPRCasFinder
TGCCGGCCGCTGGCCGGTAACCTC	CAAACGCACGGCAACGCCGGCCGCTGGCCGGCAACCCCCAAACGCATGGTAG
TGCCGGCCGCTGGCCGGCAACCTC

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Crispr_ID: CP031741_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_3

424555-424636

Orphan

Consensus_repeat	Method
GCCGCCGTTGACGGTCTCGATGCTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_3

>merge|CP031741|3|424555-424636|CRISPRCasFinder
GTCGCCGTTGACGGTCTCCACGTCCTTGCGCACGCGGCTGCCGACCAGGCCGATGCCACCGTTGACGGTTTCCACGCCGCCT

>CP031741|3|3|424555-424636|CRISPRCasFinder
GTCGCCGTTGACGGTCTCCACGTCCTT	GCGCACGCGGCTGCCGACCAGGCCGAT
GCCACCGTTGACGGTTTCCACGCCGCCT

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Crispr_ID: CP031741_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_4

424723-424857

Orphan

Consensus_repeat	Method
GCCGCCGTTGACGGTCTCGATGCTGCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP031741_4

>merge|CP031741|4|424723-424857|CRISPRCasFinder
GCCGCCGTTGACGGTCTCGATGCTGCCCGTGCGCGCACGAGCGGCGACCTTGACGCCGCCGTTGACGGTATCGATGCTGCCGGTTTCCACGCCTTCGCCGACACGGATGCCACCATTGACGGTGTCCAGCTTGCC

>CP031741|4|4|424723-424857|CRISPRCasFinder
GCCGCCGTTGACGGTCTCGATGCTGCC	CGTGCGCGCACGAGCGGCGACCTTGAC
GCCGCCGTTGACGGTATCGATGCTGCC	GGTTTCCACGCCTTCGCCGACACGGAT
GCCACCATTGACGGTGTCCAGCTTGCC

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Crispr_ID: CP031741_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_5

1341849-1341952

Orphan

Consensus_repeat	Method
CCATCCACGCGTGGCGTGGATCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_5

>merge|CP031741|5|1341849-1341952|CRISPRCasFinder
CCATCCACGCGTGGCGTGGATCTACGGGGCCTCTGCTGGGTGCGGACCTTGGTCCGCACCGCTCTTCGGTGGGAAGGCGCCATCCACGCATGGCGTGGATCTAC

>CP031741|5|5|1341849-1341952|CRISPRCasFinder
CCATCCACGCGTGGCGTGGATCTAC	GGGGCCTCTGCTGGGTGCGGACCTTGGTCCGCACCGCTCTTCGGTGGGAAGGCG
CCATCCACGCATGGCGTGGATCTAC

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Crispr_ID: CP031741_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_6

1561349-1561423

Orphan

Consensus_repeat	Method
CATCCACGCATGGCATGGATCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_6

>merge|CP031741|6|1561349-1561423|CRISPRCasFinder
CATCCACGCATGGCATGGATCTACTGGGCATGTGTTCTACGCGGGATACCTCATCCACGCATGGCGTGGATCTAC

>CP031741|6|6|1561349-1561423|CRISPRCasFinder
CATCCACGCATGGCATGGATCTAC	TGGGCATGTGTTCTACGCGGGATACCT
CATCCACGCATGGCGTGGATCTAC

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Crispr_ID: CP031741_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_7

1702560-1702631

Orphan

Consensus_repeat	Method
GTAGATCCACGCCATGCGTGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_7

>merge|CP031741|7|1702560-1702631|CRISPRCasFinder
GTAGATCCACGCCATGCGTGGATATCGCGGAAAAGATCGGATGGACAACGTAGATCCACGCCATGCGTGGAT

>CP031741|7|7|1702560-1702631|CRISPRCasFinder
GTAGATCCACGCCATGCGTGGAT	ATCGCGGAAAAGATCGGATGGACAAC
GTAGATCCACGCCATGCGTGGAT

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Crispr_ID: CP031741_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_8

1852078-1852191

Orphan

Consensus_repeat	Method
ATGCCCGGCGAGGCAGCGATCAGCTCGCCACCTTGCTCCACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_8

>merge|CP031741|8|1852078-1852191|CRISPRCasFinder
ATGCCCGGCGAGGCAGCGATCAGCTCGCCACCTTGCTCCACACCTTTGGCACCTACCGGTAGCGCCGGGCCATGCCCGGCGGGGCAGCGATCAGCTCGCCACCTTGCTCCACAC

>CP031741|8|8|1852078-1852191|CRISPRCasFinder
ATGCCCGGCGAGGCAGCGATCAGCTCGCCACCTTGCTCCACAC	CTTTGGCACCTACCGGTAGCGCCGGGCC
ATGCCCGGCGGGGCAGCGATCAGCTCGCCACCTTGCTCCACAC

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Crispr_ID: CP031741_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_9

2118002-2118161

Orphan

Consensus_repeat	Method
TCCTGCATCCACGCATGGCGTGGATC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP031741_9

>merge|CP031741|9|2118002-2118161|CRISPRCasFinder
TCCTGCATCCACGCATGGCGTGGATCCACCTGGGCGGGGTAGTGCCGGCCGCTGGCCGGCAATCCTGCATCCACGCATGGCGTGGATCTACCGGGGAGGCATGCATCCACGCATGGCGTGGATCTACCGGGGAGGCATGCATCCACGCATGGCGTGGATC

>CP031741|9|9|2118002-2118161|CRISPRCasFinder
TCCTGCATCCACGCATGGCGTGGATC	CACCTGGGCGGGGTAGTGCCGGCCGCTGGCCGGCAA
TCCTGCATCCACGCATGGCGTGGATC	TACCGGGGAGGCATGCATCCACGCATGGCGTGGATCTACCGGGGAG
GCATGCATCCACGCATGGCGTGGATC

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Crispr_ID: CP031741_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_10

2413231-2413325

Orphan

Consensus_repeat	Method
TGCCAACCAAGGTTGGCATCTACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_10

>merge|CP031741|10|2413231-2413325|CRISPRCasFinder
TGCCAACCAAGGTTGGCATCTACCAGATCACGCCACATCGGTAGTCGCCCACCTTGGTGGGCGCGCGGCATGCCAACCAAGGTTGGCATCTACCA

>CP031741|10|10|2413231-2413325|CRISPRCasFinder
TGCCAACCAAGGTTGGCATCTACCA	GATCACGCCACATCGGTAGTCGCCCACCTTGGTGGGCGCGCGGCA
TGCCAACCAAGGTTGGCATCTACCA

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Crispr_ID: CP031741_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_11

2482126-2482242

Orphan

Consensus_repeat	Method
GCGCGAGGGGAAGGCGCCATCCACGCATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_11

>merge|CP031741|11|2482126-2482242|CRISPRCasFinder
GCGCGAGGGGAAGGCGCCATCCACGCATGGAGCAACCGTGCAGGTACGCCTCAGTAGAGCCACGCCATGCGTGGCTGCTTCTGCCAAGCGCGAGGGGAAGGCGCCATCCACGCATGG

>CP031741|11|11|2482126-2482242|CRISPRCasFinder
GCGCGAGGGGAAGGCGCCATCCACGCATGG	AGCAACCGTGCAGGTACGCCTCAGTAGAGCCACGCCATGCGTGGCTGCTTCTGCCAA
GCGCGAGGGGAAGGCGCCATCCACGCATGG

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Crispr_ID: CP031741_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_12

3139284-3139378

Orphan

Consensus_repeat	Method
CCATGAGGCGTGCATCCCGTGCCCATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_12

>merge|CP031741|12|3139284-3139378|CRISPRCasFinder
CCATGAGGCGTGCATCCCGTGCCCATGCCACCCACCCGGTAGCGCCGGGCCATGCCCGGCGGATGCACCATGAGGCGTGCATCCCGTGCCCATGC

>CP031741|12|12|3139284-3139378|CRISPRCasFinder
CCATGAGGCGTGCATCCCGTGCCCATGC	CACCCACCCGGTAGCGCCGGGCCATGCCCGGCGGATGCA
CCATGAGGCGTGCATCCCGTGCCCATGC

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Crispr_ID: CP031741_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_13

3447451-3447539

Orphan

Consensus_repeat	Method
AGTGCGAACCAACGGTTCGCACCCACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_13

>merge|CP031741|13|3447451-3447539|CRISPRCasFinder
AGTGCGAACCAACGGTTCGCACCCACCGAGGTAGCCCGGCAGCGGTAGCGCCGGGATAGTGAGTGCGAACCAACGGTTCGCACCCACCG

>CP031741|13|13|3447451-3447539|CRISPRCasFinder
AGTGCGAACCAACGGTTCGCACCCACCG	AGGTAGCCCGGCAGCGGTAGCGCCGGGATAGTG
AGTGCGAACCAACGGTTCGCACCCACCG

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Crispr_ID: CP031741_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_14

3536021-3536166

Orphan

Consensus_repeat	Method
TGGTGGGTTCTGAACTTGGTGGGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP031741_14

>merge|CP031741|14|3536021-3536166|CRISPRCasFinder
TGGTAGGTGTCGACCTTGGTCGGCACGGTAGATCCACGCCATGCGTGGATGGATTCCTGGATGTTTCGCTGATGTGGTGGGTTCTGAACTTGGTGGGTTCTGAACTTGGTGGGTTCTGAACTTGGTGGGTTCTGAACTTGGTGGGT

>CP031741|14|14|3536021-3536166|CRISPRCasFinder
TGGTAGGTGTCGACCTTGGTCGGC	ACGGTAGATCCACGCCATGCGTGGATGGATTCCTGGATGTTTCGCTGATG
TGGTGGGTTCTGAACTTGGTGGGT	TCTGAACTTGGTGGGTTCTGAACT
TGGTGGGTTCTGAACTTGGTGGGT

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Crispr_ID: CP031741_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_15

3805342-3805476

Orphan

Consensus_repeat	Method
CGCATGGCGTGGATCTACCGTAGCGCCAGGCCATGCCTGGCTGCCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_15

>merge|CP031741|15|3805342-3805476|CRISPRCasFinder
CGCATGGCGTGGATCTACCGTAGCGCCAGGCCATGCCTGGCTGCCTTGGTAGACGCCAACCTTGGTTGGCGCCGGCGAGATCCATCCTCGCATGGCGTGGATCTACCGTAGCGCCAGGCCATGCCTGGCTGCCTT

>CP031741|15|15|3805342-3805476|CRISPRCasFinder
CGCATGGCGTGGATCTACCGTAGCGCCAGGCCATGCCTGGCTGCCTT	GGTAGACGCCAACCTTGGTTGGCGCCGGCGAGATCCATCCT
CGCATGGCGTGGATCTACCGTAGCGCCAGGCCATGCCTGGCTGCCTT

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Crispr_ID: CP031741_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031741_16

4123448-4123540

Orphan

Consensus_repeat	Method
GCATGGTCTGGCTCTACTGCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031741_16

>merge|CP031741|16|4123448-4123540|CRISPRCasFinder
GCATGGTCTGGCTCTACTGCCGGTTGGTAGTGCCGGCCGCTGGCCGGCAACCCCGCGAACCTGCAGCCAAGCATGGCCTGGCTCTACTGCCGG

>CP031741|16|16|4123448-4123540|CRISPRCasFinder
GCATGGTCTGGCTCTACTGCCGG	TTGGTAGTGCCGGCCGCTGGCCGGCAACCCCGCGAACCTGCAGCCAA
GCATGGCCTGGCTCTACTGCCGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031741_9	9.2\|2118090\|46\|CP031741\|CRISPRCasFinder	2118090-2118135	46	CP031741.1	2118126-2118171	0	1.0
CP031741_14	14.2\|3536119\|24\|CP031741\|CRISPRCasFinder	3536119-3536142	24	CP031741.1	3536151-3536174	0	1.0

1. spacer 9.2|2118090|46|CP031741|CRISPRCasFinder matches to position: 2118126-2118171, mismatch: 0, identity: 1.0

taccggggaggcatgcatccacgcatggcgtggatctaccggggag	CRISPR spacer
taccggggaggcatgcatccacgcatggcgtggatctaccggggag	Protospacer
**********************************************

2. spacer 14.2|3536119|24|CP031741|CRISPRCasFinder matches to position: 3536151-3536174, mismatch: 0, identity: 1.0

tctgaacttggtgggttctgaact	CRISPR spacer
tctgaacttggtgggttctgaact	Protospacer
************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	919-945	4	0.852
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	505799-505825	4	0.852
CP031741_4	4.1\|424750\|27\|CP031741\|CRISPRCasFinder	424750-424776	27	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1093999-1094025	4	0.852
CP031741_4	4.2\|424804\|27\|CP031741\|CRISPRCasFinder	424804-424830	27	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	123001-123027	4	0.852
CP031741_4	4.2\|424804\|27\|CP031741\|CRISPRCasFinder	424804-424830	27	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	69169-69195	4	0.852
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	277143-277169	5	0.815
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	2035104-2035130	5	0.815
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	967152-967178	5	0.815
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	580397-580423	5	0.815
CP031741_4	4.2\|424804\|27\|CP031741\|CRISPRCasFinder	424804-424830	27	HQ632858	Tetraselmis viridis virus SI1 genomic sequence	9225-9251	5	0.815
CP031741_4	4.2\|424804\|27\|CP031741\|CRISPRCasFinder	424804-424830	27	NC_020840	Tetraselmis viridis virus S20 genomic sequence	21207-21233	5	0.815
CP031741_4	4.2\|424804\|27\|CP031741\|CRISPRCasFinder	424804-424830	27	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	376369-376395	5	0.815
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	978197-978223	6	0.778
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	111284-111310	6	0.778
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	123999-124025	6	0.778
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	39411-39437	6	0.778
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	768370-768396	6	0.778
CP031741_4	4.1\|424750\|27\|CP031741\|CRISPRCasFinder	424750-424776	27	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	257583-257609	6	0.778
CP031741_4	4.1\|424750\|27\|CP031741\|CRISPRCasFinder	424750-424776	27	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	63708-63734	6	0.778
CP031741_4	4.2\|424804\|27\|CP031741\|CRISPRCasFinder	424804-424830	27	NC_022001	Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence	39149-39175	6	0.778
CP031741_4	4.2\|424804\|27\|CP031741\|CRISPRCasFinder	424804-424830	27	NC_010182	Bacillus mycoides KBAB4 plasmid pBWB403, complete sequence	31999-32025	6	0.778
CP031741_3	3.1\|424582\|27\|CP031741\|CRISPRCasFinder	424582-424608	27	MN585195	Pseudomonas phage AUS531phi, complete genome	8552-8578	7	0.741

1. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 4, identity: 0.852

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gtccacgcggctgccgaccagccggat	Protospacer
*. ****************** * ***

2. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 4, identity: 0.852

gcgca-cgcggctgccgaccaggccgat	CRISPR spacer
-cgcgtcgctgctgccgaccaggccgaa	Protospacer
 ***. *** *****************

3. spacer 4.1|424750|27|CP031741|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 4, identity: 0.852

cgtgcgcgcacgagcggcgaccttgac	CRISPR spacer
cgtgcgcgcacgaacggcgaacttctc	Protospacer
*************.****** ***  *

4. spacer 4.2|424804|27|CP031741|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 4, identity: 0.852

ggtttccacgccttcgccgacacggat	CRISPR spacer
gggttccacgcctttgccgacacggtc	Protospacer
** ***********.********** .

5. spacer 4.2|424804|27|CP031741|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 4, identity: 0.852

ggtttccacgccttcgccgacacggat	CRISPR spacer
gggttccacgcctttgccgacacggtc	Protospacer
** ***********.********** .

6. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gatggcgcggccgccgaccaggccgat	Protospacer
*   .******.***************

7. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctgcacgcggccgccgaacaggccgag	Protospacer
 .*********.***** ********

8. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctgcacgcggccgccgaacaggccgag	Protospacer
 .*********.***** ********

9. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcacgaggctgccgaccagcaggtt	Protospacer
******* *************   * *

10. spacer 4.2|424804|27|CP031741|CRISPRCasFinder matches to HQ632858 (Tetraselmis viridis virus SI1 genomic sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccacgccatcgccaacacccag	Protospacer
************ *****.****  *

11. spacer 4.2|424804|27|CP031741|CRISPRCasFinder matches to NC_020840 (Tetraselmis viridis virus S20 genomic sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccacgccatcgccaacacccag	Protospacer
************ *****.****  *

12. spacer 4.2|424804|27|CP031741|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
tttttccgcgccttcgccgacacctat	Protospacer
  *****.***************  **

13. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcaggcggctgccgacccggcgctc	Protospacer
***** ************* ***   .

14. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cggcacgccgctgccgaccacgccgcg	Protospacer
  ****** *********** ****

15. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cggcacgccgctgccgaccacgccgcg	Protospacer
  ****** *********** ****

16. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cagcacgaggctgccgaccagggcgcg	Protospacer
  ***** ************** **

17. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcacgcggccgacgaccaggctccc	Protospacer
***********.* *********.  .

18. spacer 4.1|424750|27|CP031741|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 6, identity: 0.778

cgtgcgcgcacgagcggcgaccttgac-----	CRISPR spacer
cgtgcgcgcacgagcggcg-----gaaggtca	Protospacer
*******************     **

19. spacer 4.1|424750|27|CP031741|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 6, identity: 0.778

cgtgcgcgcacgagcggcgaccttgac-----	CRISPR spacer
cgtgcgcgcacgagcggcg-----gaaggtca	Protospacer
*******************     **

20. spacer 4.2|424804|27|CP031741|CRISPRCasFinder matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 6, identity: 0.778

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccccgccttcgccgacgaagca	Protospacer
******* *************. .*

21. spacer 4.2|424804|27|CP031741|CRISPRCasFinder matches to NC_010182 (Bacillus mycoides KBAB4 plasmid pBWB403, complete sequence) position: , mismatch: 6, identity: 0.778

ggtttccacgccttcgccgacacggat	CRISPR spacer
aagttccacaccttcgccgacaccgac	Protospacer
.. ******.************* **.

22. spacer 3.1|424582|27|CP031741|CRISPRCasFinder matches to MN585195 (Pseudomonas phage AUS531phi, complete genome) position: , mismatch: 7, identity: 0.741

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctcgtcgcggttgccgaccaggccgaa	Protospacer
 .   *****.***************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage