CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031659	Pseudomonas aeruginosa strain PABL012 chromosome, complete genome	3 crisprs	csa3,DEDDh,cas3,PD-DExK,DinG,WYL	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031659_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031659_1

345855-345968

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031659_1

>merge|CP031659|1|345855-345968|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>CP031659|1|1|345855-345968|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
CP031659.1\|AXR26391.1\|338235_339594_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
CP031659.1\|AXR26387.1\|333744_334410_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP031659.1\|AXR26389.1\|335787_337164_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
CP031659.1\|AXR26399.1\|350540_351044_-\|transcriptional-regulator	unknown	unknown	unknown
CP031659.1\|AXR32001.1\|349395_349545_-\|transcriptional-regulator	unknown	unknown	unknown
CP031659.1\|AXR26390.1\|337442_338195_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
CP031659.1\|AXR26401.1\|351758_352778_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
CP031659.1\|AXR26386.1\|332703_333582_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
CP031659.1\|AXR26403.1\|353598_354297_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
CP031659.1\|AXR26398.1\|349509_350562_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
CP031659.1\|AXR26400.1\|351148_351760_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
CP031659.1\|AXR26402.1\|352797_353550_-\|hypothetical-protein	unknown	unknown	unknown
CP031659.1\|AXR26394.1\|342667_343765_+\|spermidine-binding-periplasmic-protein-SpuE	unknown	unknown	gnl\|CDD\|270377
CP031659.1\|AXR26392.1\|339659_341030_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
CP031659.1\|AXR26388.1\|334470_335532_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
CP031659.1\|AXR26393.1\|341145_342249_+\|putrescine-binding-periplasmic-protein-SpuD	unknown	unknown	gnl\|CDD\|270377
CP031659.1\|AXR26395.1\|343819_344974_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
CP031659.1\|AXR26405.1\|355138_355633_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
CP031659.1\|AXR26404.1\|354318_354873_-\|hypothetical-protein	unknown	unknown	unknown
CP031659.1\|AXR26397.1\|347011_349399_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241

Protein	Function_ID	Function_description	E-value
CP031659.1\|AXR26391.1\|338235_339594_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
CP031659.1\|AXR26387.1\|333744_334410_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.86557e-09
CP031659.1\|AXR26389.1\|335787_337164_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
CP031659.1\|AXR26390.1\|337442_338195_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
CP031659.1\|AXR26401.1\|351758_352778_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
CP031659.1\|AXR26386.1\|332703_333582_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
CP031659.1\|AXR26403.1\|353598_354297_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.0519e-77
CP031659.1\|AXR26398.1\|349509_350562_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
CP031659.1\|AXR26400.1\|351148_351760_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
CP031659.1\|AXR26394.1\|342667_343765_+\|spermidine-binding-periplasmic-protein-SpuE	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
CP031659.1\|AXR26392.1\|339659_341030_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
CP031659.1\|AXR26388.1\|334470_335532_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.70173e-165
CP031659.1\|AXR26393.1\|341145_342249_+\|putrescine-binding-periplasmic-protein-SpuD	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
CP031659.1\|AXR26395.1\|343819_344974_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
CP031659.1\|AXR26405.1\|355138_355633_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
CP031659.1\|AXR26397.1\|347011_349399_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0

>CP031659.1|AXR26395.1|343819_344974_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>CP031659.1|AXR26394.1|342667_343765_+|spermidine-binding-periplasmic-protein-SpuE
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVISKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>CP031659.1|AXR26393.1|341145_342249_+|putrescine-binding-periplasmic-protein-SpuD
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>CP031659.1|AXR26392.1|339659_341030_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>CP031659.1|AXR26391.1|338235_339594_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>CP031659.1|AXR26390.1|337442_338195_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>CP031659.1|AXR26389.1|335787_337164_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>CP031659.1|AXR26388.1|334470_335532_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSVLLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>CP031659.1|AXR26387.1|333744_334410_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>CP031659.1|AXR26386.1|332703_333582_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>CP031659.1|AXR26397.1|347011_349399_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLAVAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAADADSPWWDDRRTERRETRADIVRAAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFAHPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>CP031659.1|AXR32001.1|349395_349545_-|transcriptional-regulator
MGQGAGRRVVLHGGSSRLTKDFQGPSIRSMPRAGGIRRMLGTTTRRKDR
>CP031659.1|AXR26398.1|349509_350562_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>CP031659.1|AXR26399.1|350540_351044_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>CP031659.1|AXR26400.1|351148_351760_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>CP031659.1|AXR26401.1|351758_352778_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>CP031659.1|AXR26402.1|352797_353550_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>CP031659.1|AXR26403.1|353598_354297_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAGIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>CP031659.1|AXR26404.1|354318_354873_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>CP031659.1|AXR26405.1|355138_355633_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG

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Crispr_ID: CP031659_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031659_2

1996740-1996841

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP031659_2

>merge|CP031659|2|1996740-1996841|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>CP031659|2|2|1996740-1996841|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP031659.1\|AXR27972.1\|2004294_2005194_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
CP031659.1\|AXR27973.1\|2005203_2005539_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
CP031659.1\|AXR27959.1\|1991959_1992271_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
CP031659.1\|AXR27955.1\|1988068_1988872_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
CP031659.1\|AXR27969.1\|2001955_2002885_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP031659.1\|AXR27960.1\|1992267_1993923_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
CP031659.1\|AXR27962.1\|1995808_1996435_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
CP031659.1\|AXR27958.1\|1990884_1991742_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
CP031659.1\|AXR27957.1\|1990379_1990601_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
CP031659.1\|AXR27956.1\|1988875_1990237_-\|serine/threonine-protein-kinase	unknown	unknown	unknown
CP031659.1\|AXR27965.1\|1998133_1998400_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
CP031659.1\|AXR27963.1\|1996543_1996702_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
CP031659.1\|AXR27967.1\|2000576_2001140_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
CP031659.1\|AXR27961.1\|1994012_1995812_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
CP031659.1\|AXR27970.1\|2003084_2003402_+\|3-phosphoglycerate-kinase	unknown	unknown	unknown
CP031659.1\|AXR27971.1\|2003548_2004190_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
CP031659.1\|AXR27966.1\|1998681_2000514_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP031659.1\|AXR27954.1\|1987070_1987928_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
CP031659.1\|AXR27968.1\|2001121_2001949_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
CP031659.1\|AXR27964.1\|1996976_1998101_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688

Protein	Function_ID	Function_description	E-value
CP031659.1\|AXR27972.1\|2004294_2005194_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
CP031659.1\|AXR27973.1\|2005203_2005539_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
CP031659.1\|AXR27965.1\|1998133_1998400_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
CP031659.1\|AXR27955.1\|1988068_1988872_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101
CP031659.1\|AXR27960.1\|1992267_1993923_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
CP031659.1\|AXR27962.1\|1995808_1996435_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
CP031659.1\|AXR27958.1\|1990884_1991742_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.55277e-117
CP031659.1\|AXR27957.1\|1990379_1990601_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
CP031659.1\|AXR27969.1\|2001955_2002885_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
CP031659.1\|AXR27959.1\|1991959_1992271_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
CP031659.1\|AXR27963.1\|1996543_1996702_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
CP031659.1\|AXR27967.1\|2000576_2001140_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
CP031659.1\|AXR27961.1\|1994012_1995812_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
CP031659.1\|AXR27971.1\|2003548_2004190_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	4.63564e-103
CP031659.1\|AXR27966.1\|1998681_2000514_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
CP031659.1\|AXR27954.1\|1987070_1987928_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.98959e-96
CP031659.1\|AXR27968.1\|2001121_2001949_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	9.99012e-42
CP031659.1\|AXR27964.1\|1996976_1998101_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0

>CP031659.1|AXR27963.1|1996543_1996702_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>CP031659.1|AXR27962.1|1995808_1996435_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>CP031659.1|AXR27961.1|1994012_1995812_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLVAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>CP031659.1|AXR27960.1|1992267_1993923_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>CP031659.1|AXR27959.1|1991959_1992271_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>CP031659.1|AXR27958.1|1990884_1991742_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWRDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>CP031659.1|AXR27957.1|1990379_1990601_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>CP031659.1|AXR27956.1|1988875_1990237_-|serine/threonine-protein-kinase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>CP031659.1|AXR27955.1|1988068_1988872_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>CP031659.1|AXR27954.1|1987070_1987928_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKSKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>CP031659.1|AXR27964.1|1996976_1998101_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>CP031659.1|AXR27965.1|1998133_1998400_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>CP031659.1|AXR27966.1|1998681_2000514_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>CP031659.1|AXR27967.1|2000576_2001140_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>CP031659.1|AXR27968.1|2001121_2001949_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>CP031659.1|AXR27969.1|2001955_2002885_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>CP031659.1|AXR27970.1|2003084_2003402_+|3-phosphoglycerate-kinase
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>CP031659.1|AXR27971.1|2003548_2004190_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFCEKGLARARERMRQALETDTSLCVPLPTLR
>CP031659.1|AXR27972.1|2004294_2005194_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>CP031659.1|AXR27973.1|2005203_2005539_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

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Crispr_ID: CP031659_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031659_3

2925872-2926008

Orphan

Consensus_repeat	Method
GCATAAAGGGGACAGATTTATTTTCCCTACTCTAATTCTCTGAGCAGGGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031659_3

>merge|CP031659|3|2925872-2926008|CRISPRCasFinder
GCATAAAGGGGACAGATTTATTTTCCCTACTCTAATTCTCTGAGCAGGGAGGGTCCAGTGCAGGCGCCGTAAGGAGGCTTCGCAAGCATAAAGGGGACGGATTTATTTTCCCTACTCTAATTCTCTGAGCAGGGAGG

>CP031659|3|3|2925872-2926008|CRISPRCasFinder
GCATAAAGGGGACAGATTTATTTTCCCTACTCTAATTCTCTGAGCAGGGAGG	GTCCAGTGCAGGCGCCGTAAGGAGGCTTCGCAA
GCATAAAGGGGACGGATTTATTTTCCCTACTCTAATTCTCTGAGCAGGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031659.1\|AXR32078.1\|2930171_2931089_+\|hypothetical-protein	unknown	unknown	unknown
CP031659.1\|AXR28819.1\|2928388_2929969_+\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
CP031659.1\|AXR28809.1\|2915623_2915977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|339223
CP031659.1\|AXR32077.1\|2919337_2919430_-\|type-I-addiction-module-toxin,-SymE-family	unknown	unknown	gnl\|CDD\|370150
CP031659.1\|AXR28810.1\|2916035_2916464_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373068
CP031659.1\|AXR28812.1\|2916804_2917967_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP031659.1\|AXR28823.1\|2935760_2936144_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|237370
CP031659.1\|AXR28818.1\|2928010_2928232_-\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
CP031659.1\|AXR28808.1\|2915396_2915624_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373059
CP031659.1\|AXR28820.1\|2931170_2932706_+\|sigma-54-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225821
CP031659.1\|AXR28815.1\|2924339_2924735_+\|hypothetical-protein	unknown	unknown	unknown
CP031659.1\|AXR28813.1\|2920540_2921020_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
CP031659.1\|AXR28824.1\|2936154_2939034_+\|glycine-dehydrogenase-(decarboxylating)	unknown	unknown	gnl\|CDD\|235432
CP031659.1\|AXR28817.1\|2927105_2927957_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP031659.1\|AXR28821.1\|2932713_2934456_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
CP031659.1\|AXR28822.1\|2934578_2935502_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP031659.1\|AXR28814.1\|2921902_2922331_+\|hypothetical-protein	unknown	unknown	unknown
CP031659.1\|AXR28811.1\|2916475_2916805_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376050
CP031659.1\|AXR28816.1\|2926572_2927109_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
CP031659.1\|AXR28807.1\|2894723_2911751_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|293785

Protein	Function_ID	Function_description	E-value
CP031659.1\|AXR28819.1\|2928388_2929969_+\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	9.80085e-89
CP031659.1\|AXR28809.1\|2915623_2915977_+\|hypothetical-protein	gnl\|CDD\|339223	pfam14426, Imm2, Immunity protein Imm2. A predicted Immunity protein, with a mostly all-alpha fold, present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene.	1.90187e-31
CP031659.1\|AXR32077.1\|2919337_2919430_-\|type-I-addiction-module-toxin,-SymE-family	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	3.7129e-06
CP031659.1\|AXR28810.1\|2916035_2916464_+\|hypothetical-protein	gnl\|CDD\|373068	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease. This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.	2.66928e-05
CP031659.1\|AXR28812.1\|2916804_2917967_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.72026e-87
CP031659.1\|AXR28823.1\|2935760_2936144_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|237370	PRK13380, PRK13380, glycine cleavage system protein H; Provisional.	1.58495e-66
CP031659.1\|AXR28808.1\|2915396_2915624_+\|hypothetical-protein	gnl\|CDD\|373059	pfam14424, Toxin-deaminase, The BURPS668_1122 family of deaminases. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Burkholderia BURPS668_1122. Members of this family are found as toxins in polymorphic toxin systems in a wide range of bacteria and in the eukaryote Perkinsus. Members of this family typically possess a DxE catalytic motif in Helix-2 of the core fold instead of the more common C[H]xE motif. The Perkinsus versions are predicted to be inactive.	2.96551e-19
CP031659.1\|AXR28811.1\|2916475_2916805_+\|hypothetical-protein	gnl\|CDD\|376050	pfam18624, CdiI_4, CDI immunity protein. Contact-dependent growth inhibition (CDI) is a mechanism of inter-cellular competition in which Gram-negative bacteria exchange polymorphic toxins using type V secretion systems. Structure analysis of the CDI toxin from Escherichia coli NC101 reveals that it has moderate structural homology to Whirly-like proteins found in plastids, but appears to lack the characteristic Whirly RNA-binding site.	7.94726e-23
CP031659.1\|AXR28820.1\|2931170_2932706_+\|sigma-54-dependent-transcriptional-regulator	gnl\|CDD\|225821	COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].	0
CP031659.1\|AXR28818.1\|2928010_2928232_-\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	4.75274e-30
CP031659.1\|AXR28813.1\|2920540_2921020_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.60425e-17
CP031659.1\|AXR28824.1\|2936154_2939034_+\|glycine-dehydrogenase-(decarboxylating)	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
CP031659.1\|AXR28821.1\|2932713_2934456_-\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	1.83371e-179
CP031659.1\|AXR28822.1\|2934578_2935502_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.85259e-65
CP031659.1\|AXR28817.1\|2927105_2927957_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.81722e-12
CP031659.1\|AXR28816.1\|2926572_2927109_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	9.02398e-37
CP031659.1\|AXR28807.1\|2894723_2911751_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|293785	sd00046, FHA_bHelix, beta-helical repeat found in filamentous hemagglutinin and related adhesins and CdiA family proteins. This model contains ten copies of an approximately 20-residue repeat found in two-partner secretion (TPS) proteins, including the filamentous hemagglutinin (FHA) family of adhesins and CdiA family proteins. These repeats form a right-handed beta-helical structure, and are found in large secreted proteins from a number of plant and animal pathogens. FHA family adhesins bind to various types of cells and may contribute to attachment, aggregation, and pathogenesis. CdiA proteins are involved in contact-dependent growth inhibition (CDI).	6.62337e-38

>CP031659.1|AXR28815.1|2924339_2924735_+|hypothetical-protein
MACLSWLEKLKESFASTGLDYEDLYEIIEASITRKRTNFPAFINEASKGVGFSVGEGHFYSLDQDWDDPEEFNEVSFFLGEVETSSIPLLDYVFLMKIAADVYSDFFPEERDSVLSSARKLEERYSKRFPV
>CP031659.1|AXR28814.1|2921902_2922331_+|hypothetical-protein
MIIGEKIFEFRFRSFFMSGSLVCKMLVLFLRFSRSGWVSLDIGEGVLRILSFGSEPKLLGLDEISDDFAYPIQSSNELDRYFGKDLLAVYKYLISDVEDSCVGVYFDFGDCGFSVLESEDNLSIVDGVVRVSDDVALSKLEI
>CP031659.1|AXR28813.1|2920540_2921020_+|pentapeptide-repeat-containing-protein
MITIFFETGEELDLPLASFAKSNLSGLELHRAIFDGLDLSEADFTASNLRNASFNHALLGGAVMNSAALMNASFVDAIMKGVKLVDAMAAYADFSGADLSMASLKNADIGGSNFINSNLRDVNIDVARIDGAVFRGAIYNDRTIWPKGFIPENFGAIKG
>CP031659.1|AXR32077.1|2919337_2919430_-|type-I-addiction-module-toxin,-SymE-family
MRPLYSLAGFEVNEKVRIRVMQGCLVITAE
>CP031659.1|AXR28812.1|2916804_2917967_+|IS3-family-transposase
MSKQRRTFSAEFKREAAALVLDQGYSHIDACRSLGVVDSALRRWVKQLEAERQGVTPKSKALTPEQQKIQELEARINRLEREKAIFKKGYRSLDVGRTRSYALIDQLSEQESVEVVCSAFDVARSCYYVHRLRRRRVDARRVALRSQVNQLFSQSRGSAGSRSILGMLREEGVTIGRFRVRRLMRELGLVSKQPGSHAYKQATVERPDIPNRLNREFATEHPNQVWCGDITYVWAQGRWHYLAAVLDLHTRRVIGWAFSAKPDAELVIKALDMAYEQRGRPQQVLFHSDQGSQYASRLFRQRLWRYRMQQSMSRRGNCWDNSPMERLFRSLKSEWVPSTGYLTAQEAQRDISHYLMHRYNWIRPHQFNDGLPPAVAEEKLNPLSGMG
>CP031659.1|AXR28811.1|2916475_2916805_+|hypothetical-protein
MNELFGQPYNEADPCWVVMCYMDIMYSDGRFIKAIECIVNRWGYSTDGAYCNFPDENSPFDEEHFEGAEFSYGYPPKDEDTIVVSEAVCSGLLIPDTDLGENPRRERGV
>CP031659.1|AXR28810.1|2916035_2916464_+|hypothetical-protein
MSFNPNIKNHLSNFDGLTQKSGISGTYNLDAFSQAVSSNGVKVLSETPGSVKGITTIEYQIPAYDRAGNVIGYKAQPFTKTVYDPKVISDQKVLDLGRQAAASGYVKAVASGDRYYDSTAGGITFRVYLDERTGAVLNFYPK
>CP031659.1|AXR28809.1|2915623_2915977_+|hypothetical-protein
MEERVTYGEIRAWFLGSYYNYCRVKLNHQSPWVEGESEVGYAYSELENSFDLPIEKLMLEVLALILSAGRSSDKVKRYHLDVIHGLLKEIKLSSVLDDLPSDEAAELRDDLRVLGLY
>CP031659.1|AXR28808.1|2915396_2915624_+|hypothetical-protein
MVYRGIDTEYKILDNIADQLGSNTSARGAVNILTEKAACASCLNVAEQFKAKYPNITVNILDNQGVMLRPPRKTP
>CP031659.1|AXR28807.1|2894723_2911751_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MDIRSPLNQCIALSLAGILFLNPIVAAAAGLALDKAAGGNTGLGQAGNGVPIVNIATPNGAGLSNNHFRDYNVGANGLILNNATGKTQGTQLGGIILGNPNLKGQAAQVILNQVTGGNRSTLAGYTEVAGQSARVIVANPHGITCQGCGFINTPRATLTTGKPIMDGQRLERFQVDGGDIVVEGAELNVGNLEQFDLITRSAKLNAKLYAKNLNIVTGRNDVQADSLQATPRAADGSEKPQLAIDSSALGGMYAGAIRLVGTEQGVGVRLAGDMAASGGDIRIDASGKLSLAQASSQGDLKIAAQAVELNGKTYAGGSAEIRSAEELVNRQSLAARERIVLEAAHIDNAGVIEAGVEPDERRNARGDLELRSGTLRNAGSLVASRALEAKASQALDNQGGSLKGATVRVDGGHLDNRGGKLLAEGELRVEASSLDNRQDGLLQSRDRAVVKTRGDLDNRGGQVVGLNELQVQAAALDNRSAGLLSSKGDMDIEVARLDNSAGGKLVSERRTLLKADRLDNRSGRIVAGQDLDLSSRLIDNRAGDISSTSRVVASAREQLDNRGGKIVGDSGLDITTPRMLNQDKGVLASRDGLRLSATELFNGAGGLLSSQKGIDVSLAGAFDNQAGSLDSRGFLTVKSAWLDNQGGTLSSAGALAVTSQGALNNQGGRLASDAGLSLSSASLDNSQAGAISGKGAVEIRTGNLNNSRKASIGSDAGLTLVAARVDNSQAGRIAAKGAIDADLQGLDQHDRGNLVSDTGITLDLNKGSLVNRAQGLIATPGTLLLRQLGVVDNSGGEISSDRAFTLATSALNNQEGRLLSGGALTLRIAQALDNSLEGIVSGAGGLDIQAFVLDNRSGSIGSKGAIDIGVTRLENDAGTLIAERGLKLAADEANSSKGRIAANGSLHAKVGTLSQKGGELTSQDSLTLDLGILNNNAGRIAGNQGVDITARQVDNSVGEIASQGVVALNLTEQLDNRGGKIVGDSGLGITAPHVLNQDKGVLASRDGLRLSATELFNGAGGLLSSQKGIDVSLAGAFDNQAGSLDSRGFLTVKSAWLDNQGGTLSSAGALAVTSQGALNNQGGRLASDAGLSLSSASLDNSQAGAISGKGAVEIRTGNLNNSRKASIGSDAGLTLVAARVDNSQAGRIAAKGAIDADLQGLDQHDRGNLVSDTGITLDLNKGSLVNRAQGLIATPGTLLLRQLGVVDNSGGEISSDRAFTLATSALNNQGGRLLSGGALTLRIAQALDNSLEGLVSGAGGLDIQAFVLDNRSGSIGSKGAIDIGVTRLENDAGTLIAERGLKLVADEANNSKGSIVAKDDLRAKLGALVQNGGELTTQGALALDADKVDNGAGRIAGNRGVVIDARQVDNRAGEIASQGVATLNLTEQLDNRGGKIVGDSGLGITAPRVLNQDKGVIASRDGLRLSGTELFNGNAGLLSSQRHIEVTLDGVLDNQGKGALLSDGTLTVSAGRIHNQDATLSSAGALRLSSQEAVDNRGGKLVTDSSLRLTSASLDNSRSGIISANAAAEIHTGVLNNSQKGNLGSNDGLGLIATEVDNSQEGRITAKGMIDANIKGLDQQGKGRLVSNAGIILDLNEGTLANGAQGLIATPGTLLLRQLGMVDNSGGEISSDRAFTLTTSALTNQGGRLRSGGVLTLRIAQALDNSLEGVLSGTGGLDIRALALDNRSGSIGSKGAVDIDVSRLENDDGDLLSEGRLKLTAERANSVRGRIAARGDLHASVTAFNQAGGELSSEGALMLEADSLDNRSGGLVSADGNLTVSARRIDNRAGEIASPGQVTLDVAEQLDNRGGKAIGDSGLRLAAPRVLNQDGGVLASRDGLRLNGAELFNGNGGLLSSQQSIDVILDGVLGNQAGSLSSQGRLSVKSGRLDNQGGAVSSAGTLSLSSQGALNNQGGRVVTDAGAVLRSASLDNSQGGIVSAKGAAEIRTGSLNNSQKGGIGSGAGLALVADLVDNSQNGRITAKGAIDANLKGLDQQGSGRLVSDTAIALDLRGGELVNRAQGLIATPGALLLRQLGVVDNSGGGEISSDRSFTLAATALSNRGGRVISGDSLTLRIAQALDNSLQGVLSASGGLDVAALVFDNHSGIVASKGDTHIGVNRLENEAGRVVSEGALDLTAKQVSSAKGRIAAKGDLQVTVGTLEQQGGELASQGTLTLDADSLDNRNGGLVSADGGVAAEARQIDNRGGEISSVAKVALAVREQLDNRGGKVIGDSELSLTVQRLLNQAKGVLASRDGLHLDGAELLNGDGGLLSSQRLVDVTLSGALDNQGSGALVSEGSLTVKADQVNNQAGTFSSAGSLLVTSRGELNNQGGRLVTDAGATLNSTGFDNSRAGLVSAKGAVAIRTGALNNSQKGSIGGNTGVTLVAGLVDNGREGRISTKGTLDANLKGLLQQGGGSLVGERGVTLDLNGGTLDNHDLGLVSTPGALLLRQLGMVDNSVGGEISSDRAFTLAANTLNNQGGRLISSEALTLRIAKTLDNSLKGQVLATDRLAIESQVLDNRAGTIGSKGDARISVTSLDNAEQGSLVSEGRLELVADQVSNGNQGRIAARGVLEAAVGTLLQQGGELVSQGSLDLRADVLDNSQSGLIAANGGIAIEARQVDNRGGEISSTSKVAVNAREQLDNRGGKVIGDSGLRLTVQRLLNQAKGVLAGRDGLSLDGGELFNGDGGRLDSQNSLSVSLGGVLDNQGGALVSEGSLTARAARLDNRGGTFSSAGALALTSQAALDNQGGRLLSDAGVTLKGASLDNSRSGVISAKGAVDIRTGVLDNSRNGGIGSNAGITLVAARLDNGQQGRVSAKGLLDANLKGLDQRGGGVLVSETGVTLDLNGGTLVNRDGGLIATPGALLLRQLGVVDNGAGGEISSDRAFTLAAASLDNRGGRLIGAASLTLRIAQALDNSLAGVISGAAGLDIAAARLDNSAKGTLASRAGIDLRVDGALDNHAEGTVSGARLTLASASLDNSGKGLLSGNAGLSVATGALDNAEGGQLISQGVLDVSSADLDNRGGALSGKQSLRLSAANLDNRGGLLTSDGELELTAGRVDSADGGEISARGDLRLTVERLVQRQGRLIGERGVSLDLRGGDLDNQGGLISARGPLSIERLNVLDNRQGGEISSQQGFELLARRIDNGQQGRIISAGKLRLDADALGNAGAGLLSGWQGLTVTGGSLDNSAGGTLSSKDGELAISLGGALDNHGQGALVSKGAQRIDAASLDNAQGIVSGESDVTLSIAGKLDNGQGGLVSAQRALSFERDDTLLNNAGGRINGGSLLLKGASLDNSDGQLISQGRLDAILGGALVNTGAARLASGGDLLLRSASVDNRGGKLVSQGLLEISAGSLDNSASGTLASQADMSLRLVGGALRNQQDGLIFSQAGALEVQAGSLDNRQGTLQAQGDNRLRIGGALDNQGGRLDSRAGNLDLQSGSLDNGAGGVLNSAKGWLKLVTGLFDNSAGVTQAQSLEIRAGQGVRNQQGHLSALGGDNRIVTADFDNQGGGLYASGLLSLDGQRFLNQGAAAGQGGKVGAGRIDFSLAGALANRFGQLESESELHLRAAAIDNSGGSLRALGRSGSTRLVAGDLNNAYGVLESANQDLDLQLGSLANAGGRILHTGNGTFGLDSGQVIRAGGELTTNGLLDIRASEWTNSSVLQAGRLNLDIGTFRQTAEGKLLAVQSFTGRGGDWSNDGLLASDGSFRLELSGGYRGNGRATSLGDFALNAASLDLGDAASLAGGANVTLGAGNLLVNRGRITAAGDLVASAASLNNYGTLGGGGNLRLNAPALLNERGLLFSGADMTLRAGDITNLYGDVYSLGRLDIARDDAGGWANRLENISGNLESTGDMRFSVSSLLNRRETLEIEGDLQNSAIGVRCTGCQLSERWGKTRSSSELVWIREYKSTLGESSAAASITAGRDLLVVGASLQNIASNISAVRDATLSLSNFENKGYALGEYAVRGVYSPPSKFGEELLMRILAYNAVNDPSYGEGYASTGGRLPNIHYFDKNFNEKVSPLEVIHGNGKNGGPGWHLYFGTLDVEYPGTDRWNKAIGRIPAPNYSSKKTDAIPDLLKGLAPLDELTINKGANSTVGAVVQAGGRVTVNAAESFNNSVLQGFQAVQETQLPHQDIAVSSTTSAVVTLKSQLPADLARQQINPLTLPGFSLPQGQNGLFRLASQGAQVNQASGALKSASDLTQSGHGVSVSAQAGSDASGWSTQARRVGDDRVTSLAGSAYQGRVAEAIDALRASAPISGDGGNTGRFQAGEHQATTGLGGLVEGNASGHSGNGVILADLRGGLPSFSSLPAADRIQSTVPGHDGNGTILANWQGAQATVQASPSTVRVEGVVSSPGGNGSILADLPAEQSSVQALPSAVRAQGSLPRLEERSALLAEPPVGQPALQTLPSVARVEGVPSNATPSNSHKYLIETNPALTELKQFLNSDYLLGGLGINPDDSKKRLGDGLYEQRLVREAIVQRTGQRFIAGLNSDEAMFRYLMDNAIASKDVLGLTPGVTLSAAQVAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLGPNGALIQGRDVNLITGGDLRNAGTLRAQNDLSATAGNIDNSGLIEAGNRLDLLASGSIRNDQGGIIAGREVSLSALTGDVINERTVTQHQSSYRGTGTTEAFADSAARIEAAQKLTVSAGRDVANIGGVIDSKGDLALQGGRDVLVSAAVAERGWTAGSQAYQTQTTQMGAEVVAGRDISVSAGRDISVVGSRIDARRDVTFEAGRDVGLVAAANEEHAYGKTKKVTFQDDKITQQATRVDAGGDLAINAGQDLRLVASQASAGDEAYLVAGDKLELLAANDSSYYLYDKKSKGSFGSKKTRRDEITDVTAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFEAVKDLHQESHEKSKGDLAWQSSKGKGQTDETVRQSQIVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKQMEQRGDVDWRRVQELHDSWKYSNSGLGVGAQLAIAIVVTYFTAGAASAALGSMAGVGAGSGSMMAAAGSTAMVQAGTAVGTAAAGWANAAGTAVAMGMASNGAISTINNRGNLGDVVKDVTSSDALRGYVVAGTTAGLTAGVYDKWTSTQTGTSTALPNTGAVAPAAGLGTWQGVGQFTSNQLLQNGTSVLLDRALGGKGSLGDALQNSLANAFAAYGFKLIGDTTHGVLDDGSLGKIGLHALMGGLAAEAVGGDFRTGALAAGVNEALVDSLAKQYASLPIDDKKGLLIMSSQLIGVLAASTQGDADAKSLQTGAWVAGNATQYNFLNHVENEERWKSQKACQGGDEAACGRADAWDKLDRDRDLALMTACSTGGQASTCSALRQEAWKAAQSLKQASWSPEAREQYAQVMQNPELRAYTIESELRSINQVNNPITAGDSKRLAKALASFGSDFVPVYGDTKAFSEAQDPFDYAMAGVGLVPGAGDAAQKVLSKAKKLFQEGKVAESADLVEGLTKGVKNSSAAKGFIPAERTGLNFEEKVKNKAGGYVDVELSARQKFDKSGVVVDSKFAQSDLVARYSPEGNLYIDWYGTTVSGKGVGSEMISRAIEAVGANKVKTVSAQLGKDNLDAFKAGSSRGLSKEQAVWNTPLGKTMNSLGFTEVEVHGASVKFLHLE
>CP031659.1|AXR28816.1|2926572_2927109_-|N-acetyltransferase
MTEERLLRRDEIPLVWEIDRSEVIEHLYSVEAGQLVLRPEFYDMRGWPEGEAEHYTPILLDCFDRGGWFLGLFDQGRLIGAVVLDPRRLGPERDWLQLKFLHLSNAYRRRGLGAHLFHLAATQARHLGASALYVSATPSQNTVDFYMRLGCRLCMEPDEELYRLEPEDVHLVYQILNA
>CP031659.1|AXR28817.1|2927105_2927957_-|class-I-SAM-dependent-methyltransferase
MRSDLHEANRLSWNAATRAHNSHKADQAAFFRNGGSTLYPEELQLLGHLDGLRLLHLQCNAGQDSLSLARLGARVTGVDIADSAIDFARQLSRDSGIAADFQRDDILRWLPVAATRGERFERVFASYGTLVWLSDLKRWADGIAQVLVPGGRFVLVEFHPFALYFDPHWQPAYDYFSREPIAESGVSDYVAESGASLAPSGYRAGVENFSNPHPSYEFQWGLADVIGALLGAGLQLERLEEYPYANGWAGFDGMRDGGGGRMLPPADRPRLPLMYGLSARKPR
>CP031659.1|AXR28818.1|2928010_2928232_-|YgdI/YgdR-family-lipoprotein
MTSRLLPALLLSSAFAVLAGCSTPTIVTLNDGREIQAVDTPRYDRSSGFYELEQLDGKRTRVNKDQVRSIKDM
>CP031659.1|AXR28819.1|2928388_2929969_+|esterase-family-protein
MSAVSTSLLLFLNLLTPAQAAQPVPLADGRIEIAAGESRQRYLDLAPGELQLLDLEVDRGRVRLRATTPDGKALRATELAGRQSLGLQAGERQGLRLTFSADEDTALTLIPTQRLTPQTPALDSPAPQSPTLQRLQAELAEKRPGALKAFWKQVAKQGTPLVEPLDAERVLVTFLWRQQRPGDVRLLWPTPEVNTRRFEALAGSDVRYLSLPLRRDARVSYQLSADLPDLQQADRGTLRLALQAAARPDPLSRTPWLNSRALPRAEQASLVQLGGAPAETWDQPRKDVPRGKVERLGYTSQALANQRQLTLYTPPGYDPEGQRYPLLVLFDEDHYARDVPTPTILDNLIAAGRIRPTLAVIVGNVDASSRGRELPCNEAFADMLAHELLPWLQQRYALSEEPADRVLSGSSYGGLASGCIAYRYPERFGKVLSLSGSFWWGPDEQQPQWLVRQFAAGERLPLVFFLSSGLLEEPEADGILGSNRSLRAALQGKGYPLHYREFPGGHDYAAWSLELAEGLQALLPAH
>CP031659.1|AXR32078.1|2930171_2931089_+|hypothetical-protein
MRRLLRPVFCAALFCLYPALVQAAAESEILGLFQRWQAAHGQRSGKALEGVYAPRLDYYGRAQTRERTLSAKQAFFARHPDFEQRIVAAPQIVPGDQEGRYEVRFVKQVRLDGRLRNYPGLLLAERAGPGDTWRFVGESDEITRYAVDSRYTPLARGRFAGTEADFAWVVAHAPNSAALCDEYEDCRCDLWSADARVPPKPLGSCTGAVLSVLGDLDDSGRERLQLLRTWWTSTWTKSSLLEIRDGQWVRMLPDISTTWDDAEAELVLYKADPQQPGRVLVTETVMDDEGDWSHRTRSEALRPVP
>CP031659.1|AXR28820.1|2931170_2932706_+|sigma-54-dependent-transcriptional-regulator
MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPNVYIDAPTLSPEVLEELRAALLGIRGVQAMTVVDILPGQRRRLQLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPAGERLASLFDDETLEDALVEQGFRLPLREVTFMGQALLLDATPITEGPGEGERHLAGGLLTLYEPNRIGERLAALHHDHAEGFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGDLEIAGTAVARQNDGEVGSLEEAVEGFEKALLEKLYVSYPSTRQLAARLQTSHTAIAHRLRKYGIGPRA
>CP031659.1|AXR28821.1|2932713_2934456_-|amidohydrolase
MKQRIPTLLAGACLAIPLHALGAADLLVVNARIFTANPQQPFAEALAVEDGGILAVGDEAGLRALADGDSQVVDLGGKRLMPGLIDTHSHAVFGGLELAGADMGNEQVGLDELERRLRAWRDNGKARHGDMLNVSGMHTAYWSQVKDFRARFDHGEWADQPLAFIGSDHHTGWANAAMLKRAGIDAARVRALPEEQRNTIGHDADATPNGFLADAGLDAVLAVLPAPSAEQMLEAGRSAVRYSNSLGLTAWMDPAANGSPGDALFSLRPDENTVGVLPVYQRLAKGGELSAHVAALLVANPRSRPADLEVLDKVRQRFLGSPNLTLPGIKVFADGVPEYPAQTAALLEPYRNSRKTGELLIDPAHFGELVSAADARGWLVHVHAIGDRAVREALNGMQQARRDRDSGIAHSITHLQLVNPKEFERFRPLGVIASMQLYWAAADETTVDLMKPYISAFAYRYQYPAHSLLSKGATIAGASDWPVSSLSPWKAIQQAVTRKGPQGVLNAGERLDRQTMFYAYTRNAARTIGLEHRIGSLEPGKQADFIVLDRDVFEVPETQLGETKVLKTWFAGKPVYSSEG
>CP031659.1|AXR28822.1|2934578_2935502_+|LysR-family-transcriptional-regulator
MDKLNALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTEAGQIYLEAARQSLETLRTAGQEIELLESELRGELRLAAPPSFAAAFLQQACASFLEAHPRISLRVDLDETFLDLSEGGYDLGLRDGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQGPEDFERHAWLVFQHPSLNQNFWWMERDGARQRIDQPRPRLASDNYDFLLAHLLAGLGLQFCPQWSVAPLLGEGRLVRLLGDYHFDPGPFGPSIHVLYPGHRRNTRKVRAFLEHLRASLQRQGLCHRL
>CP031659.1|AXR28823.1|2935760_2936144_+|glycine-cleavage-system-protein-H
MSKLRFTTDHEWLRQDDDGLLTVGITAYAQDALGDVVFVQLPELGEHAAGSEVAVLESVKAASNILMPLDGEVVAINDALPDAPELVNQDPLGEAWFFRFRPADAGAWEKLLDQAAYDRLLNANADA
>CP031659.1|AXR28824.1|2936154_2939034_+|glycine-dehydrogenase-(decarboxylating)
MTDNLNLGAIDLGTDDEFIARHIGPRAADTQAMLQRLGYDSLDALIGNVIPDSIKGSSVLDLPAGMGEAEALASLKAIAARNRALRSFIGQGYYNCHTPAPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLVSDLSGLPIANASMLDEATAAAEAMTFCKRLSKNRTSQAFFASRHCHPQTLDVLRTRAEPLGIEVVVGDESAIEDFSAYFGALLQYPTCDGEIVDYRELVSRFHAVDALVAVAADLLALTLLTPPGEFGADVAIGSAQRFGVPLGFGGPHAAYFATRDAFKRDMPGRLVGVSIDRHGKPAYRLAMQTREQHIRREKATSNICTAQVLLANIASMFAVYHGPQGLLRIARRTHRLTAILAAGLERLGVAVEQKHFFDTLSLATGARTAAIHAKARAAGINLREIDAGRLGLSLDETVRQADVETLWGLLAEEGQALPDFAALAASSGDRLPVELLRQSAILSHPIFNRHHSETELMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEMIPVTWAEFGNLHPFAPAEQSEGYRQLTDELEAMLCSATGYDAVSLQPNAGSQGEYAGLLAIRAYHQSRGDSQRDICLIPSSAHGTNPATASMVGMRVVVVACDARGNVDVEDLRNKASEHKERLAALMITYPSTHGVFEEAIREICAIVHDCGGQVYIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPIGVRAHLAPFLPGHARGERKEGAVSAAPYGSASILPITWMYIRMMGGEGLKRASEMAILNANYIAHRLEEHYPVLYAGGNGLVAHECILDLRPLKDSSGISVDDVAKRLMDFGFHAPTMSFPVAGTLMIEPTESESKAELDRFCDAMIRIREEIRAVERGELDKEDNPLKNAPHTAAELLGEWNHAYSREQAAYPLASLVEAKYWPPVGRVDNVYGDRNLTCSCPPIEAYSEE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031659_2	2.1\|1996765\|52\|CP031659\|CRISPRCasFinder	1996765-1996816	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 2.1|1996765|52|CP031659|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

630256 : 719781

Pseudomonas_phage(30.95%)

plate,tRNA,tail,holin,integrase

attL 626518:626534|attR 632465:632481

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
626518:626534	attL	NA	NA	NA	NA
AXR26675.1\|630256_630394_-\|integrase	integrase	NA	NA	NA	NA
AXR26676.1\|630640_634378_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
632465:632481	attR	NA	NA	NA	NA
AXR26677.1\|634484_636338_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
AXR26678.1\|636417_638412_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
AXR26679.1\|638494_638944_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	6.6e-18	38.8
AXR26680.1\|639013_639229_-	30S ribosomal protein S21	NA	NA	NA	NA
AXR26681.1\|639429_640455_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.1
AXR26682.1\|640533_641103_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AXR26683.1\|641186_641540_+	dihydroneopterin aldolase	NA	NA	NA	NA
AXR26684.1\|641530_642073_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AXR26685.1\|642045_643278_-\|tRNA	multifunctional tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/2'phosphatase	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
AXR26686.1\|643321_643828_-	DUF4136 domain-containing protein	NA	NA	NA	NA
AXR26687.1\|643921_645475_-	SpoVR family protein	NA	NA	NA	NA
AXR26688.1\|645471_646743_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
AXR26689.1\|646843_648766_-	PrkA family serine protein kinase	NA	NA	NA	NA
AXR26690.1\|649044_649377_-	thiosulfate sulfurtransferase	NA	NA	NA	NA
AXR26691.1\|649420_650272_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
AXR26692.1\|650271_650652_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
AXR26693.1\|650688_651495_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
AXR26694.1\|651610_652597_-	4-hydroxythreonine-4-phosphate dehydrogenase 1	NA	NA	NA	NA
AXR26695.1\|652593_653886_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
AXR26696.1\|653866_656641_-	LPS-assembly protein LptD	NA	NA	NA	NA
AXR26697.1\|656767_657784_+	aminoglycoside phosphotransferase	NA	NA	NA	NA
AXR26698.1\|657780_658455_+	nucleotidyltransferase family protein	NA	NA	NA	NA
AXR26699.1\|658456_659215_+	molecular chaperone DjlA	NA	NA	NA	NA
AXR26700.1\|659215_660277_-	DUF3530 family protein	NA	NA	NA	NA
AXR26701.1\|660428_662822_+	PAS domain S-box protein	NA	NA	NA	NA
AXR26702.1\|662867_663500_+	DNA-binding response regulator	NA	NA	NA	NA
AXR26703.1\|663628_664663_+	extracellular solute-binding protein	NA	NA	NA	NA
AXR26704.1\|664896_666006_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
AXR26705.1\|666061_667108_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXR26706.1\|667221_668469_+	ABC transporter permease	NA	NA	NA	NA
AXR26707.1\|668574_669405_+	ABC transporter permease	NA	NA	NA	NA
AXR26708.1\|669528_670203_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AXR26709.1\|670202_671021_+	phosphoglycolate phosphatase	NA	NA	NA	NA
AXR26710.1\|671093_672572_+	anthranilate synthase component I	NA	NA	NA	NA
AXR26711.1\|672758_673073_-	transcriptional regulator	NA	NA	NA	NA
AXR26712.1\|673172_673943_-	transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
AXR26713.1\|674400_674601_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
AXR26714.1\|674648_675008_+	hypothetical protein	NA	NA	NA	NA
AXR26715.1\|675371_675821_+\|holin	holin	B5TK61	Pseudomonas_phage	5.0e-26	53.3
AXR26716.1\|675842_676358_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
AXR26717.1\|676354_676912_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
AXR26718.1\|677064_677391_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
AXR26719.1\|677387_678275_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
AXR26720.1\|678267_678801_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	1.1e-61	64.0
AXR26721.1\|678802_680878_+\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	2.1e-196	49.8
AXR26722.1\|680874_681333_+\|tail	phage tail protein	NA	NA	NA	NA
AXR26723.1\|681375_682536_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
AXR26724.1\|682548_683052_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
AXR26725.1\|683066_683411_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AXR26726.1\|683580_685818_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
AXR26727.1\|685827_686700_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.3e-75	51.7
AXR26728.1\|686674_686881_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
AXR26729.1\|686938_687928_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-106	55.8
AXR26730.1\|687960_688590_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	6.0e-86	78.0
AXR26731.1\|688586_688949_+	hypothetical protein	NA	NA	NA	NA
AXR26732.1\|688945_689203_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
AXR26733.1\|689217_689448_+	hypothetical protein	NA	NA	NA	NA
AXR26734.1\|689518_690013_+\|tail	phage tail protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
AXR26735.1\|690024_690372_+	hypothetical protein	NA	NA	NA	NA
AXR26736.1\|690401_690656_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
AXR26737.1\|690702_692538_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.2e-28	36.2
AXR26738.1\|692530_692872_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
AXR26739.1\|692879_693575_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	7.4e-69	49.8
AXR26740.1\|693577_694348_+\|tail	phage tail protein	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
AXR26741.1\|694402_695005_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	2.2e-53	57.8
AXR26742.1\|695063_698717_+	DUF1983 domain-containing protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	57.1
AXR26743.1\|699702_700755_+\|tail	phage tail protein	A0A0H5AXZ9	Pseudomonas_phage	2.9e-64	50.9
AXR26744.1\|700754_701057_+	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
AXR26745.1\|701053_701284_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	1.4e-24	71.6
AXR26746.1\|701702_702308_+	glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	2.1e-75	66.3
AXR26747.1\|702309_703359_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
AXR26748.1\|703355_704192_+	indole-3-glycerol-phosphate synthase	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
AXR26749.1\|704253_704898_-	cyclic AMP receptor-like protein	NA	NA	NA	NA
AXR26750.1\|705169_705592_+	OsmC family protein	NA	NA	NA	NA
AXR26751.1\|705910_706705_+	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA
AXR26752.1\|706759_707407_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
AXR26753.1\|707506_707845_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
AXR26754.1\|707923_709405_+	AAA family ATPase	U5XJW0	Phormidium_phage	1.0e-67	33.7
AXR26755.1\|709444_710245_-	SDR family oxidoreductase	NA	NA	NA	NA
AXR26756.1\|710305_711382_-	DUF805 domain-containing protein	NA	NA	NA	NA
AXR26757.1\|711503_712472_-	nitronate monooxygenase	NA	NA	NA	NA
AXR26758.1\|712488_712911_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
AXR26759.1\|713201_714236_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
AXR26760.1\|714235_714955_+	hypothetical protein	NA	NA	NA	NA
AXR26761.1\|714955_715378_+	polymer-forming cytoskeletal family protein	NA	NA	NA	NA
AXR26762.1\|715455_715806_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
AXR26763.1\|715859_716951_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
AXR32005.1\|716953_718297_-	peptidase M23	O03937	Lactobacillus_phage	3.0e-18	44.1
AXR26764.1\|718581_719781_+\|tRNA	Tyrosine--tRNA ligase 2	NA	NA	NA	NA

DBSCAN-SWA_2

884922 : 923927

Pseudomonas_phage(95.65%)

terminase,head,capsid,portal,protease,tail,holin,integrase

attL 879610:879624|attR 912369:912383

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
879610:879624	attL	NA	NA	NA	NA
AXR32011.1\|884922_885972_-\|integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.5e-102	53.7
AXR26904.1\|885971_886214_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-16	60.3
AXR32012.1\|886197_886554_-	hypothetical protein	NA	NA	NA	NA
AXR26905.1\|886558_887248_-	hypothetical protein	A0A0A0YUE3	Pseudomonas_phage	1.1e-29	37.2
AXR26906.1\|887420_887612_-	hypothetical protein	A0A1W6JTB8	Pseudomonas_phage	1.6e-26	96.6
AXR26907.1\|887724_888387_-	hypothetical protein	A0A1W6JT97	Pseudomonas_phage	2.7e-44	96.9
AXR26908.1\|888383_888719_-	hypothetical protein	A0A1W6JTA6	Pseudomonas_phage	2.0e-48	88.3
AXR26909.1\|888721_888952_-	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	3.8e-30	94.6
AXR26910.1\|889049_889283_-	hypothetical protein	A0A0A0YQ28	Pseudomonas_phage	3.6e-36	97.4
AXR26911.1\|889285_889669_-	helix-turn-helix transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	3.7e-54	95.8
AXR26912.1\|889786_890365_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXR26913.1\|891269_891620_+	hypothetical protein	NA	NA	NA	NA
AXR26914.1\|891616_891895_+	hypothetical protein	A0A1W6JTC3	Pseudomonas_phage	4.2e-39	96.7
AXR26915.1\|891891_892200_+	hypothetical protein	NA	NA	NA	NA
AXR26916.1\|892171_892489_+	hypothetical protein	NA	NA	NA	NA
AXR26917.1\|892485_892815_+	hypothetical protein	NA	NA	NA	NA
AXR26918.1\|892807_893608_+	hypothetical protein	A0A1W6JTB2	Pseudomonas_phage	1.5e-118	84.2
AXR26919.1\|893604_893835_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	2.9e-38	97.4
AXR26920.1\|893831_894026_+	hypothetical protein	NA	NA	NA	NA
AXR26921.1\|894025_894928_+	hypothetical protein	A0A125RNK1	Pseudomonas_phage	1.4e-40	60.1
AXR26922.1\|894924_895713_+	AAA family ATPase	A0A0A0YRV1	Pseudomonas_phage	1.2e-144	98.5
AXR26923.1\|895709_897140_+	replicative DNA helicase	A0A0A0YUG7	Pseudomonas_phage	3.7e-256	94.7
AXR26924.1\|897136_897421_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	5.6e-39	89.8
AXR26925.1\|897417_897975_+	hypothetical protein	A0A0A0YRV6	Pseudomonas_phage	1.0e-73	95.0
AXR26926.1\|898075_898450_+	hypothetical protein	NA	NA	NA	NA
AXR26927.1\|898796_899018_+	hypothetical protein	NA	NA	NA	NA
AXR26928.1\|899767_900082_+\|holin	phage holin, lambda family	A0A0A0YUH2	Pseudomonas_phage	5.7e-53	100.0
AXR26929.1\|900081_900699_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	1.8e-106	92.7
AXR26930.1\|900668_901148_+	hypothetical protein	A0A0U4JX95	Pseudomonas_phage	1.3e-51	88.5
AXR26931.1\|901239_901659_+	HNH endonuclease	A0A0U4B0J6	Pseudomonas_phage	5.8e-77	97.8
AXR26932.1\|901790_902201_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
AXR32013.1\|902193_903957_+\|terminase	terminase large subunit	A0A0U4B0M7	Pseudomonas_phage	0.0e+00	95.7
AXR26933.1\|903956_905360_+\|portal	phage portal protein	A0A0U4IJ43	Pseudomonas_phage	1.8e-255	95.3
AXR26934.1\|905376_906249_+\|protease	Clp protease ClpP	A0A0U4B0J0	Pseudomonas_phage	1.8e-157	100.0
AXR26935.1\|906262_907474_+\|capsid	phage major capsid protein	A0A0U4JIW8	Pseudomonas_phage	1.7e-214	99.5
AXR26936.1\|907520_907709_+	hypothetical protein	A0A0U4JVT0	Pseudomonas_phage	6.9e-22	100.0
AXR26937.1\|907712_907892_+	hypothetical protein	A0A0U4K5G7	Pseudomonas_phage	6.0e-23	96.6
AXR26938.1\|907902_908235_+\|head,tail	phage gp6-like head-tail connector protein	A0A0U4JEH2	Pseudomonas_phage	2.1e-53	98.2
AXR26939.1\|908235_908787_+	hypothetical protein	NA	NA	NA	NA
AXR26940.1\|908783_909377_+	hypothetical protein	A0A0U4J906	Pseudomonas_phage	3.0e-103	99.5
AXR26941.1\|909389_909827_+	hypothetical protein	A0A0U4IBQ1	Pseudomonas_phage	2.6e-72	95.2
AXR26942.1\|909850_910636_+	hypothetical protein	A0A0U4ISK2	Pseudomonas_phage	7.2e-145	98.1
AXR26943.1\|911239_913381_+\|tail	phage tail protein	A0A0U3TH20	Pseudomonas_phage	0.0e+00	99.2
912369:912383	attR	NA	NA	NA	NA
AXR26944.1\|913390_913894_+	hypothetical protein	A0A0U4IIK1	Pseudomonas_phage	1.8e-93	100.0
AXR26945.1\|913895_915599_+	hypothetical protein	A0A0U4JP39	Pseudomonas_phage	0.0e+00	96.1
AXR26946.1\|915601_916012_+	hypothetical protein	A0A1W6JT78	Pseudomonas_phage	6.1e-55	93.4
AXR26947.1\|916011_916557_+	hypothetical protein	A0A1B0YZV4	Pseudomonas_phage	3.5e-98	97.2
AXR26948.1\|916567_916972_+	hypothetical protein	A0A0A0YR47	Pseudomonas_phage	5.8e-66	97.8
AXR26949.1\|916968_918627_+	hypothetical protein	A0A0A0YRR5	Pseudomonas_phage	0.0e+00	97.3
AXR26950.1\|918656_919244_+	hypothetical protein	A0A1B0Z051	Pseudomonas_phage	2.4e-100	92.8
AXR26951.1\|919236_919428_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	1.0e-28	96.8
AXR26952.1\|919432_919993_+	hypothetical protein	A0A1W6JT84	Pseudomonas_phage	4.2e-99	98.4
AXR26953.1\|919993_920275_+	hypothetical protein	A0A0A0YR51	Pseudomonas_phage	8.7e-45	97.8
AXR26954.1\|920267_920870_+\|tail	phage tail protein	A0A0A0YRS1	Pseudomonas_phage	1.2e-46	58.1
AXR26955.1\|920869_921172_+	hypothetical protein	A0A0A0YUD8	Pseudomonas_phage	2.3e-43	89.0
AXR26956.1\|921168_921402_+	hypothetical protein	A0A0A0YQ17	Pseudomonas_phage	1.9e-32	90.9
AXR26957.1\|922490_923363_-	hypothetical protein	NA	NA	NA	NA
AXR26958.1\|923702_923927_+	hypothetical protein	A0A1W6JT95	Pseudomonas_phage	9.4e-34	100.0

DBSCAN-SWA_3

1255495 : 1314545

Pseudomonas_phage(68.89%)

terminase,head,capsid,tRNA,portal,protease,holin,integrase

attL 1268094:1268111|attR 1314804:1314821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR27261.1\|1255495_1258348_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.0e-148	37.0
AXR27262.1\|1258468_1258837_-	DNA polymerase III subunit chi	NA	NA	NA	NA
AXR27263.1\|1258848_1259277_-	DNA polymerase III subunit chi	NA	NA	NA	NA
AXR27264.1\|1259273_1260761_-	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.0e-51	36.1
AXR27265.1\|1261097_1261910_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXR27266.1\|1261993_1262917_+	alpha/beta hydrolase	NA	NA	NA	NA
AXR27267.1\|1263108_1264227_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
AXR27268.1\|1264219_1265287_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
AXR27269.1\|1265418_1265916_-	RDD family protein	NA	NA	NA	NA
AXR27270.1\|1266045_1267626_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
1268094:1268111	attL	NA	NA	NA	NA
AXR27271.1\|1268122_1269124_+\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	1.8e-153	97.2
AXR27272.1\|1269237_1270143_+	DNA-processing protein DprA	S6BFL3	Thermus_phage	1.8e-38	41.0
AXR27273.1\|1270324_1270768_+	hypothetical protein	NA	NA	NA	NA
AXR27274.1\|1270841_1271144_-	hypothetical protein	A0A0A0YRS6	Pseudomonas_phage	2.6e-50	95.0
AXR27275.1\|1271140_1271854_-	hypothetical protein	A0A0A0YUE3	Pseudomonas_phage	9.4e-128	97.5
AXR27276.1\|1271850_1272042_-	hypothetical protein	A0A0A0YQ21	Pseudomonas_phage	9.2e-30	100.0
AXR27277.1\|1272160_1272868_-	hypothetical protein	A0A0A0YUE9	Pseudomonas_phage	5.8e-45	94.9
AXR27278.1\|1272864_1273200_-	hypothetical protein	A0A1W6JTA6	Pseudomonas_phage	1.6e-48	90.1
AXR27279.1\|1273202_1273433_-	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	4.1e-32	92.1
AXR27280.1\|1273476_1274313_-	prohibitin family protein	A0A0A0YRT7	Pseudomonas_phage	1.3e-128	99.6
AXR27281.1\|1274309_1274564_-	hypothetical protein	A0A0A0YUF2	Pseudomonas_phage	3.8e-39	100.0
AXR27282.1\|1274663_1274897_-	hypothetical protein	A0A0A0YQ28	Pseudomonas_phage	6.6e-38	100.0
AXR27283.1\|1274899_1275286_-	helix-turn-helix transcriptional regulator	A0A0A0YWH0	Pseudomonas_phage	9.2e-61	97.6
AXR27284.1\|1275718_1276468_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AXR32026.1\|1277064_1277520_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	4.1e-60	72.0
AXR27285.1\|1278814_1279165_+	hypothetical protein	NA	NA	NA	NA
AXR27286.1\|1279161_1279440_+	hypothetical protein	A0A1W6JTC3	Pseudomonas_phage	1.1e-39	96.7
AXR27287.1\|1279436_1279745_+	hypothetical protein	A0A1W6JTC0	Pseudomonas_phage	1.1e-40	84.3
AXR27288.1\|1279741_1280050_+	hypothetical protein	NA	NA	NA	NA
AXR27289.1\|1280042_1280339_+	hypothetical protein	NA	NA	NA	NA
AXR27290.1\|1280335_1280665_+	hypothetical protein	NA	NA	NA	NA
AXR27291.1\|1280657_1281428_+	phage antirepressor protein	A0A2H4J5H6	uncultured_Caudovirales_phage	4.9e-45	45.2
AXR27292.1\|1281424_1281655_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	5.9e-39	97.4
AXR27293.1\|1281651_1282491_+	helix-turn-helix domain-containing protein	A0A1W6JTD5	Pseudomonas_phage	9.7e-148	94.6
AXR27294.1\|1282666_1283287_+	AAA family ATPase	A0A1W6JTD8	Pseudomonas_phage	6.5e-109	99.0
AXR27295.1\|1283283_1284681_+	replicative DNA helicase	A0A1W6JTB3	Pseudomonas_phage	6.1e-264	99.1
AXR27296.1\|1284677_1284962_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	5.4e-42	97.7
AXR27297.1\|1284958_1285516_+	hypothetical protein	A0A0A0YRV6	Pseudomonas_phage	2.9e-76	99.3
AXR27298.1\|1286172_1286700_+	Rha protein	A0A0P0ZFJ1	Escherichia_phage	1.1e-27	42.1
AXR27299.1\|1286783_1287116_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.9e-54	96.4
AXR27300.1\|1287112_1287730_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	1.7e-104	90.7
AXR27301.1\|1287726_1287969_+	hypothetical protein	A0A0H5AWC3	Pseudomonas_phage	2.9e-20	53.2
AXR27302.1\|1287965_1288415_+	hypothetical protein	A0A0U4JX95	Pseudomonas_phage	2.6e-43	78.5
AXR27303.1\|1288511_1289249_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	1.3e-42	46.2
AXR27304.1\|1289463_1290009_+	DNA-packaging protein	A0A1W6JT69	Pseudomonas_phage	4.8e-63	68.3
AXR27305.1\|1289980_1291921_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	4.0e-213	54.5
AXR27306.1\|1291936_1292161_+	hypothetical protein	NA	NA	NA	NA
AXR27307.1\|1292160_1293636_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	4.0e-197	69.9
AXR27308.1\|1293632_1294829_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	5.3e-115	58.0
AXR27309.1\|1294828_1295188_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.7e-16	51.4
AXR27310.1\|1295254_1296250_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.7e-130	69.9
AXR27311.1\|1296249_1296561_+	hypothetical protein	NA	NA	NA	NA
AXR27312.1\|1296557_1296995_+	hypothetical protein	NA	NA	NA	NA
AXR27313.1\|1297045_1297246_+	hypothetical protein	NA	NA	NA	NA
AXR27314.1\|1297273_1298020_+	hypothetical protein	NA	NA	NA	NA
AXR27315.1\|1298088_1298898_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	3.4e-65	50.4
AXR27316.1\|1298975_1302224_+	tape measure domain-containing protein	A0A2I7S9D9	Vibrio_phage	3.3e-50	47.0
AXR27317.1\|1302220_1302631_+	hypothetical protein	NA	NA	NA	NA
AXR27318.1\|1302679_1306231_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	1.3e-177	34.7
AXR27319.1\|1306230_1307232_+	hypothetical protein	NA	NA	NA	NA
AXR32027.1\|1307228_1308089_+	hypothetical protein	NA	NA	NA	NA
AXR27320.1\|1308085_1309846_+	hypothetical protein	A0A2I7S8R8	Vibrio_phage	3.4e-25	24.6
AXR27321.1\|1309845_1310082_+	hypothetical protein	NA	NA	NA	NA
AXR27322.1\|1310327_1310957_+	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	3.6e-99	86.1
AXR32028.1\|1310953_1311322_+	hypothetical protein	H2BDA0	Pseudomonas_phage	6.7e-45	82.8
AXR27323.1\|1311318_1311654_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	1.3e-42	85.5
AXR27324.1\|1311763_1312660_-	hypothetical protein	Q787C9	Pseudomonas_virus	2.3e-14	25.2
AXR27325.1\|1314344_1314545_-	hypothetical protein	A0A2K8HVM8	Pseudomonas_phage	2.3e-15	84.1
1314804:1314821	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1522621 : 1585246

Pseudomonas_phage(77.27%)

terminase,head,capsid,tRNA,portal,tail,holin,integrase

attL 1520700:1520716|attR 1562401:1562417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1520700:1520716	attL	NA	NA	NA	NA
AXR27510.1\|1522621_1523950_+\|tRNA	tRNA lysidine(34) synthetase TilS	M1IB95	Acanthocystis_turfacea_Chlorella_virus	1.0e-05	24.1
AXR27511.1\|1524120_1525749_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.0e-158	53.1
AXR27512.1\|1525751_1526597_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.4e-48	40.3
AXR27513.1\|1526642_1527932_+	enolase	A0A1X9I5Z8	Streptococcus_phage	2.5e-139	61.5
AXR27514.1\|1527996_1528281_+	cell division protein FtsB	NA	NA	NA	NA
AXR27515.1\|1528300_1529005_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AXR27516.1\|1529065_1529314_-	putative sulfurtransferase YedF	NA	NA	NA	NA
AXR27517.1\|1529279_1530506_-	YeeE/YedE family protein	NA	NA	NA	NA
AXR27518.1\|1530581_1531490_-	glutathione-dependent formaldehyde neutralization regulator	NA	NA	NA	NA
AXR27519.1\|1531621_1532734_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.3e-35	29.1
AXR27520.1\|1532787_1533639_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AXR27521.1\|1533709_1534183_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AXR27522.1\|1534179_1535247_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AXR27523.1\|1535234_1535984_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.8e-68	53.0
AXR32035.1\|1536016_1536652_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
AXR27524.1\|1536697_1537591_+	lipoprotein NlpD/LppB	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
AXR27525.1\|1537695_1538700_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
AXR27526.1\|1539126_1539450_-	Ferredoxin 1	NA	NA	NA	NA
AXR32036.1\|1539516_1542096_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
AXR27527.1\|1542155_1543130_-\|integrase	integrase	A0A2H4J8E5	uncultured_Caudovirales_phage	1.4e-102	57.6
AXR27528.1\|1543139_1543349_-	DUF4224 domain-containing protein	A0A1B0VMB6	Pseudomonas_phage	2.9e-13	57.8
AXR27529.1\|1543558_1543876_-	hypothetical protein	A0A1B0Z2L6	Pseudomonas_phage	1.7e-52	95.2
AXR27530.1\|1543920_1544124_-	hypothetical protein	A0A125RNQ4	Pseudomonas_phage	1.7e-26	85.1
AXR27531.1\|1544120_1545521_-	hypothetical protein	A0A125RNQ6	Pseudomonas_phage	1.3e-64	78.9
AXR27532.1\|1545517_1545724_-	hypothetical protein	H2BDF2	Pseudomonas_virus	1.3e-26	84.1
AXR27533.1\|1545687_1545936_-	hypothetical protein	H2BD39	Pseudomonas_phage	3.5e-37	91.5
AXR27534.1\|1545917_1546493_-	DUF4406 domain-containing protein	A0A0U4IBL4	Pseudomonas_phage	1.4e-108	97.9
AXR27535.1\|1546489_1547809_-	site-specific DNA-methyltransferase	A0A2K9VGT2	Pontimonas_phage	1.8e-79	42.8
AXR27536.1\|1547874_1548177_-	hypothetical protein	A0A0U4ISH7	Pseudomonas_phage	2.8e-41	98.0
AXR27537.1\|1548176_1548851_-	hypothetical protein	NA	NA	NA	NA
AXR27538.1\|1549064_1549313_-	hypothetical protein	A0A0U3TGX2	Pseudomonas_phage	1.3e-36	96.3
AXR27539.1\|1549323_1549710_-	helix-turn-helix transcriptional regulator	A0A1B0YZX7	Pseudomonas_phage	8.9e-64	97.6
AXR27540.1\|1550019_1550886_-	hypothetical protein	A0A0U4JP11	Pseudomonas_phage	3.4e-156	98.3
AXR27541.1\|1551112_1551319_-	hypothetical protein	NA	NA	NA	NA
AXR27542.1\|1551361_1551550_-	hypothetical protein	A0A0U4B0L2	Pseudomonas_phage	4.1e-30	98.4
AXR27543.1\|1551567_1551774_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	3.9e-34	97.1
AXR27544.1\|1551784_1551991_-	hypothetical protein	A0A0U4B0I0	Pseudomonas_phage	7.6e-30	97.1
AXR27545.1\|1552490_1552745_+	DUF1654 domain-containing protein	A0A127KNY9	Pseudomonas_phage	4.8e-26	69.5
AXR27546.1\|1552783_1553626_-	DUF3037 domain-containing protein	NA	NA	NA	NA
AXR27547.1\|1553622_1554366_-	hypothetical protein	NA	NA	NA	NA
AXR27548.1\|1554426_1555182_-	helix-turn-helix transcriptional regulator	L7TH81	Pseudomonas_virus	4.0e-76	75.3
AXR27549.1\|1555270_1555537_+	hypothetical protein	NA	NA	NA	NA
AXR27550.1\|1555692_1556397_+	DNA-binding protein	A0A0U4J8Z7	Pseudomonas_phage	1.8e-126	99.1
AXR27551.1\|1556461_1557295_+	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	4.3e-71	69.7
AXR27552.1\|1557281_1558079_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	2.6e-49	49.8
AXR27553.1\|1558075_1558282_+	ninG protein	A0A1B0YZY8	Pseudomonas_phage	1.6e-27	83.8
AXR27554.1\|1558278_1558860_+	recombination protein NinG	A0A0U4KL68	Pseudomonas_phage	7.0e-105	97.9
AXR27555.1\|1558856_1559153_+	hypothetical protein	A0A1B0YZZ2	Pseudomonas_phage	4.0e-48	95.9
AXR27556.1\|1559190_1559865_+	hypothetical protein	A0A1B0YZZ3	Pseudomonas_phage	1.3e-118	99.1
AXR27557.1\|1560101_1560416_+\|holin	phage holin, lambda family	A0A0A0YUH2	Pseudomonas_phage	5.7e-53	100.0
AXR27558.1\|1560415_1561033_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	1.8e-106	92.7
AXR27559.1\|1561002_1561482_+	hypothetical protein	A0A0U4JX95	Pseudomonas_phage	1.3e-51	88.5
AXR27560.1\|1561573_1561993_+	HNH endonuclease	A0A0U4B0J6	Pseudomonas_phage	5.8e-77	97.8
AXR27561.1\|1562124_1562535_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
1562401:1562417	attR	NA	NA	NA	NA
AXR32037.1\|1562527_1564291_+\|terminase	terminase large subunit	A0A0U4B0M7	Pseudomonas_phage	0.0e+00	95.7
AXR27562.1\|1564290_1565694_+\|portal	phage portal protein	A0A0U4IJ43	Pseudomonas_phage	1.8e-255	95.3
AXR27563.1\|1566595_1567807_+\|capsid	phage major capsid protein	A0A0U4JIW8	Pseudomonas_phage	1.7e-214	99.5
AXR27564.1\|1567853_1568042_+	hypothetical protein	A0A0U4JVT0	Pseudomonas_phage	6.9e-22	100.0
AXR27565.1\|1568045_1568225_+	hypothetical protein	A0A0U4K5G7	Pseudomonas_phage	6.0e-23	96.6
AXR27566.1\|1568235_1568568_+\|head,tail	phage gp6-like head-tail connector protein	A0A0U4JEH2	Pseudomonas_phage	2.1e-53	98.2
AXR27567.1\|1568568_1569120_+	hypothetical protein	NA	NA	NA	NA
AXR27568.1\|1569116_1569710_+	hypothetical protein	A0A0U4J906	Pseudomonas_phage	3.0e-103	99.5
AXR27569.1\|1569722_1570160_+	hypothetical protein	A0A0U4IBQ1	Pseudomonas_phage	2.6e-72	95.2
AXR27570.1\|1570183_1570969_+	hypothetical protein	A0A0U4ISK2	Pseudomonas_phage	7.2e-145	98.1
AXR27571.1\|1571024_1571390_+	hypothetical protein	A0A0U4KLC4	Pseudomonas_phage	9.0e-58	97.5
AXR27572.1\|1571573_1573715_+\|tail	phage tail protein	A0A0U3TH20	Pseudomonas_phage	0.0e+00	99.2
AXR27573.1\|1573724_1574228_+	hypothetical protein	A0A0U4IIK1	Pseudomonas_phage	1.8e-93	100.0
AXR27574.1\|1574229_1575933_+	hypothetical protein	A0A0U4JP39	Pseudomonas_phage	0.0e+00	96.1
AXR27575.1\|1575935_1576346_+	hypothetical protein	A0A1W6JT78	Pseudomonas_phage	6.1e-55	93.4
AXR27576.1\|1576345_1576891_+	hypothetical protein	A0A1B0YZV4	Pseudomonas_phage	3.5e-98	97.2
AXR27577.1\|1576901_1577306_+	hypothetical protein	A0A0A0YR47	Pseudomonas_phage	5.8e-66	97.8
AXR27578.1\|1577302_1578961_+	hypothetical protein	A0A0A0YRR5	Pseudomonas_phage	0.0e+00	97.3
AXR27579.1\|1578990_1579578_+	hypothetical protein	A0A1B0Z051	Pseudomonas_phage	2.4e-100	92.8
AXR27580.1\|1579570_1579762_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	1.0e-28	96.8
AXR27581.1\|1579766_1580327_+	hypothetical protein	A0A1W6JT84	Pseudomonas_phage	4.2e-99	98.4
AXR27582.1\|1580327_1580609_+	hypothetical protein	A0A0A0YR51	Pseudomonas_phage	8.7e-45	97.8
AXR27583.1\|1580601_1581204_+\|tail	phage tail protein	A0A0A0YRS1	Pseudomonas_phage	1.2e-46	58.1
AXR27584.1\|1581203_1581506_+	hypothetical protein	A0A0S2SY61	Pseudomonas_phage	9.4e-45	91.0
AXR27585.1\|1581502_1581742_+	hypothetical protein	A0A1B0YZV9	Pseudomonas_phage	5.0e-33	89.9
AXR27586.1\|1581764_1582043_+	hypothetical protein	A0A0U4JEI3	Pseudomonas_phage	2.1e-46	97.8
AXR27587.1\|1582264_1582429_+	TolB-like translocation protein	NA	NA	NA	NA
AXR27588.1\|1582410_1583418_-	TolB-like translocation protein	NA	NA	NA	NA
AXR27589.1\|1583565_1584072_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
AXR27590.1\|1584205_1585246_+	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_5

2661315 : 2725094

Pseudomonas_phage(49.21%)

terminase,head,capsid,tRNA,protease,portal,tail,holin,integrase

attL 2661697:2661713|attR 2686418:2686434

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR28586.1\|2661315_2662443_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2661697:2661713	attL	NA	NA	NA	NA
AXR28587.1\|2662486_2662957_-	NUDIX hydrolase	NA	NA	NA	NA
AXR28588.1\|2663043_2665269_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
AXR28589.1\|2665627_2666884_+	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	3.1e-17	81.5
AXR28590.1\|2666956_2667229_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-15	58.8
AXR28591.1\|2667454_2667823_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.9e-11	41.6
AXR28592.1\|2667850_2670127_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.4e-163	42.8
AXR28593.1\|2670208_2670427_-	translation initiation factor IF-1	NA	NA	NA	NA
AXR28594.1\|2670531_2671239_-	arginyltransferase	NA	NA	NA	NA
AXR28595.1\|2671293_2671974_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXR28596.1\|2672011_2672962_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	9.2e-62	43.0
AXR28597.1\|2673189_2675625_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	1.9e-87	52.8
AXR28598.1\|2675650_2676277_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AXR28599.1\|2676286_2677612_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.2e-80	39.2
AXR28600.1\|2677733_2679014_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
AXR28601.1\|2679015_2680413_+	siroheme synthase	NA	NA	NA	NA
AXR28602.1\|2680417_2681392_-	glutathione S-transferase family protein	NA	NA	NA	NA
AXR28603.1\|2681479_2682463_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
AXR28604.1\|2682459_2682795_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
AXR28605.1\|2682791_2683097_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.0e-22	59.6
AXR28606.1\|2683096_2683456_-	sulfurtransferase TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
AXR28607.1\|2683452_2683848_-	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
AXR28608.1\|2683958_2684627_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
AXR28609.1\|2684962_2686030_-\|integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.1e-135	68.5
AXR28610.1\|2686031_2686268_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.8e-17	53.2
AXR28611.1\|2687705_2687912_-	hypothetical protein	H2BDF2	Pseudomonas_virus	3.0e-26	85.3
2686418:2686434	attR	NA	NA	NA	NA
AXR28612.1\|2687875_2688124_-	hypothetical protein	H2BD39	Pseudomonas_phage	1.7e-39	96.3
AXR28613.1\|2688206_2688824_-	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	1.7e-88	79.9
AXR28614.1\|2688853_2689390_-	DUF4406 domain-containing protein	A0A0U4IBL4	Pseudomonas_phage	2.7e-95	93.2
AXR28615.1\|2689386_2690706_-	site-specific DNA-methyltransferase	A0A060D598	Salmonella_phage	4.0e-79	46.3
AXR28616.1\|2690771_2691074_-	hypothetical protein	A0A0U4ISH7	Pseudomonas_phage	1.1e-40	96.0
AXR28617.1\|2691073_2691748_-	hypothetical protein	NA	NA	NA	NA
AXR28618.1\|2691961_2692210_-	hypothetical protein	A0A0U3TGX2	Pseudomonas_phage	2.5e-35	92.7
AXR28619.1\|2692220_2692604_-	helix-turn-helix transcriptional regulator	A0A0U4IIG4	Pseudomonas_phage	4.8e-62	96.1
AXR28620.1\|2692915_2693782_-	hypothetical protein	A0A0U4JP11	Pseudomonas_phage	2.4e-157	99.0
AXR28621.1\|2694317_2694647_-	hypothetical protein	A0A0U4B0I0	Pseudomonas_phage	7.9e-05	84.6
AXR28622.1\|2694680_2694893_-	hypothetical protein	H2BD59	Pseudomonas_phage	1.5e-33	97.1
AXR28623.1\|2695053_2695815_-	phage repressor protein	A0A2H4J6J6	uncultured_Caudovirales_phage	4.6e-40	59.0
AXR28624.1\|2695839_2696136_+	transcriptional regulator	A0A2H4J0V8	uncultured_Caudovirales_phage	3.4e-15	56.3
AXR28625.1\|2696292_2696997_+	DNA-binding protein	A0A0U4J8Z7	Pseudomonas_phage	8.7e-126	98.7
AXR28626.1\|2697061_2697895_+	helix-turn-helix domain-containing protein	A0A1B0YZZ0	Pseudomonas_phage	4.0e-53	58.1
AXR28627.1\|2697881_2698679_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	5.7e-49	49.4
AXR28628.1\|2698675_2698882_+	ninG protein	A0A1B0YZY8	Pseudomonas_phage	2.7e-27	83.8
AXR28629.1\|2698878_2699460_+	recombination protein NinG	A0A0U4KL68	Pseudomonas_phage	1.0e-100	93.3
AXR28630.1\|2699456_2699753_+	hypothetical protein	A0A1B0YZZ2	Pseudomonas_phage	2.0e-47	94.9
AXR28631.1\|2699754_2700129_+	hypothetical protein	NA	NA	NA	NA
AXR28632.1\|2700393_2700729_+\|holin	phage holin, lambda family	A0A2D1GNJ3	Pseudomonas_phage	7.5e-43	74.5
AXR32071.1\|2700912_2701137_+	hypothetical protein	NA	NA	NA	NA
AXR28633.1\|2701129_2701438_+	HNH endonuclease	NA	NA	NA	NA
AXR28634.1\|2701585_2702074_+\|terminase	terminase small subunit	NA	NA	NA	NA
AXR28635.1\|2702077_2703772_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	7.8e-213	66.5
AXR28636.1\|2703768_2705001_+\|portal	phage portal protein	A0A2H4PI10	Pseudomonas_phage	2.2e-148	63.8
AXR28637.1\|2705016_2705874_+\|protease	Clp protease ClpP	A0A2H4PI16	Pseudomonas_phage	5.2e-80	58.0
AXR28638.1\|2705879_2707088_+\|capsid	phage major capsid protein	A0A2H4PI18	Pseudomonas_phage	2.2e-148	69.2
AXR28639.1\|2707132_2707384_+	hypothetical protein	NA	NA	NA	NA
AXR28640.1\|2707302_2707824_+	hypothetical protein	H2BDB2	Pseudomonas_virus	1.1e-53	56.3
AXR28641.1\|2707820_2708153_+\|head,tail	phage gp6-like head-tail connector protein	H2BDB3	Pseudomonas_virus	7.7e-16	51.8
AXR28642.1\|2708154_2708511_+\|head,tail	head-tail adaptor protein	H2BDB4	Pseudomonas_virus	4.2e-28	52.9
AXR32072.1\|2708510_2709353_+	hypothetical protein	D4FUL8	Pseudomonas_phage	3.9e-104	65.2
AXR28643.1\|2709300_2709918_+	methyltransferase domain-containing protein	B5WZS8	Pseudomonas_phage	2.0e-89	71.7
AXR28644.1\|2709910_2710408_+	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	1.1e-66	78.4
AXR28645.1\|2710407_2710773_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	1.3e-35	59.5
AXR28646.1\|2710845_2711361_+\|tail	phage tail protein	H2BDC0	Pseudomonas_virus	7.2e-45	54.2
AXR28647.1\|2711363_2711723_+\|tail	phage tail protein	Q9MCA4	Pseudomonas_phage	1.7e-53	90.8
AXR28648.1\|2711746_2712001_+	hypothetical protein	A0A0U4J8S9	Pseudomonas_phage	2.1e-37	83.1
AXR28649.1\|2712049_2714578_+\|tail	phage tail tape measure protein	A0A0U4JEA4	Pseudomonas_phage	0.0e+00	85.2
AXR28650.1\|2714574_2715054_+	hypothetical protein	A0A0U4K586	Pseudomonas_phage	9.6e-92	97.5
AXR28651.1\|2715037_2715529_+	DUF1833 domain-containing protein	H2BDC5	Pseudomonas_virus	1.2e-89	99.4
AXR28652.1\|2715533_2715941_+	peptidoglycan endopeptidase	J7HX80	Pseudomonas_phage	1.4e-72	97.0
AXR28653.1\|2715912_2718642_+	hypothetical protein	H2BDC9	Pseudomonas_virus	0.0e+00	98.3
AXR28654.1\|2718701_2720942_+	hypothetical protein	H2BD96	Pseudomonas_phage	0.0e+00	95.0
AXR28655.1\|2721074_2722229_-	O-antigen ligase domain-containing protein	H2BDD3	Pseudomonas_virus	1.4e-200	96.1
AXR28656.1\|2722313_2722943_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	3.4e-113	96.7
AXR28657.1\|2722939_2723308_+	hypothetical protein	H2BDD6	Pseudomonas_virus	5.3e-50	93.4
AXR28658.1\|2723304_2723568_+	hypothetical protein	H2BDD7	Pseudomonas_virus	3.3e-38	97.7
AXR28659.1\|2723603_2723870_+	hypothetical protein	L7TP56	Pseudomonas_virus	1.2e-43	96.6
AXR28660.1\|2723851_2724541_-	DUF159 family protein	A0A2K8I970	Pseudomonas_phage	9.8e-114	86.0
AXR28661.1\|2724578_2725094_-	hypothetical protein	L7TIE6	Pseudomonas_virus	1.3e-97	96.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031659

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection