CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031751	Rhodobacter sphaeroides strain EBL0706 chromosome 2, complete sequence	0 crisprs	cas2,csa3	0	2
CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	0 crisprs	NA	0	1
CP031753	Rhodobacter sphaeroides strain EBL0706 plasmid p.B, complete sequence	0 crisprs	NA	0	1
CP031750	Rhodobacter sphaeroides strain EBL0706 chromosome 1, complete sequence	2 crisprs	DEDDh,cas3,csa3,RT	0	6
CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	1 crisprs	cas2,cas1,csb2gr5,cas7,cas8u2,cas3,WYL	31	0
CP031755	Rhodobacter sphaeroides strain EBL0706 plasmid p.D, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34904 : 108411

Stx2-converting_phage(18.18%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ95974.1\|34904_36095_+\|protease	serine protease	NA	NA	NA	NA
AXQ95975.1\|36104_37367_+	hypothetical protein	A0A172Q0T4	Acinetobacter_phage	3.0e-07	35.3
AXQ95976.1\|37363_40432_+	virulence factor SrfB	NA	NA	NA	NA
AXQ95977.1\|40445_43118_+	hypothetical protein	NA	NA	NA	NA
AXQ95978.1\|43114_44176_+	hypothetical protein	NA	NA	NA	NA
AXQ95979.1\|44172_46077_+	VWA domain-containing protein	NA	NA	NA	NA
AXQ95980.1\|46081_46816_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.4e-22	39.6
AXQ95981.1\|46812_48012_+	ABC transporter permease	NA	NA	NA	NA
AXQ95982.1\|48008_49649_+	hypothetical protein	NA	NA	NA	NA
AXQ95983.1\|49870_50344_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXQ95984.1\|50379_51315_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
AXQ95985.1\|51405_52368_+	sodium-dependent bicarbonate transport family permease	NA	NA	NA	NA
AXQ95986.1\|52346_53255_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.5e-08	35.2
AXQ95987.1\|53355_54777_+	form I ribulose bisphosphate carboxylase large subunit	NA	NA	NA	NA
AXQ95988.1\|54794_55148_+	ribulose bisphosphate carboxylase small subunit	NA	NA	NA	NA
AXQ95989.1\|55232_56036_+	CbbQ/NirQ/NorQ/GpvN family protein	R4TG24	Halovirus	5.1e-13	28.2
AXQ95990.1\|58621_62950_+	hypothetical protein	NA	NA	NA	NA
AXQ95991.1\|63148_64972_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HMK6	Paramecium_bursaria_Chlorella_virus	5.3e-98	37.5
AXQ95992.1\|64996_66088_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.1e-74	41.8
AXQ95993.1\|66095_67169_+	hypothetical protein	NA	NA	NA	NA
AXQ95994.1\|67146_68481_-	hypothetical protein	NA	NA	NA	NA
AXQ95995.1\|68493_69036_-	hypothetical protein	NA	NA	NA	NA
AXQ95996.1\|69125_70556_-	hypothetical protein	NA	NA	NA	NA
AXQ95997.1\|71001_72507_+	hypothetical protein	NA	NA	NA	NA
AXQ95998.1\|72510_73080_+	hypothetical protein	NA	NA	NA	NA
AXQ95999.1\|73076_73937_+	hypothetical protein	NA	NA	NA	NA
AXQ96000.1\|73933_75445_+	DUF3492 domain-containing protein	NA	NA	NA	NA
AXQ96001.1\|75441_76848_+	hypothetical protein	NA	NA	NA	NA
AXQ96002.1\|76844_77804_-\|transposase	IS481 family transposase	A0A126QCH6	Murine_leukemia_virus	8.0e-05	31.2
AXQ96003.1\|78066_78798_+	DNA-binding response regulator	NA	NA	NA	NA
AXQ96004.1\|78893_80351_+	sulfate ABC transporter, periplasmic sulfate-binding protein	NA	NA	NA	NA
AXQ96171.1\|80468_80684_-	hypothetical protein	NA	NA	NA	NA
AXQ96005.1\|81228_81645_+	hypothetical protein	NA	NA	NA	NA
AXQ96006.1\|83712_84810_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AXQ96007.1\|85040_85730_+	hypothetical protein	NA	NA	NA	NA
AXQ96172.1\|85722_86511_-	hypothetical protein	NA	NA	NA	NA
AXQ96008.1\|86690_87695_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	2.9e-29	27.9
AXQ96009.1\|89583_90579_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	2.6e-38	33.6
AXQ96010.1\|90581_91460_+	phosphoribulokinase	NA	NA	NA	NA
AXQ96011.1\|91520_93494_+	transketolase	NA	NA	NA	NA
AXQ96012.1\|93504_94506_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AXQ96013.1\|94587_95652_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA
AXQ96014.1\|95678_97064_+	ribulose-bisphosphate carboxylase	NA	NA	NA	NA
AXQ96015.1\|97200_98517_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
AXQ96016.1\|98526_98880_+	hypothetical protein	NA	NA	NA	NA
AXQ96017.1\|104848_105940_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AXQ96018.1\|106000_106408_+\|transposase	transposase	NA	NA	NA	NA
AXQ96019.1\|106404_106755_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.1e-27	52.3
AXQ96020.1\|106812_108411_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-107	44.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031753

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10906 : 83978

Morganella_phage(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ96192.1\|10906_11791_-\|protease	viral aspartic protease	NA	NA	NA	NA
AXQ96193.1\|12034_13273_+	Hsp70 family protein	NA	NA	NA	NA
AXQ96194.1\|13436_14324_-	DMT family transporter	NA	NA	NA	NA
AXQ96195.1\|14499_14793_-	SH3 domain-containing protein	NA	NA	NA	NA
AXQ96196.1\|14993_15497_+	hypothetical protein	NA	NA	NA	NA
AXQ96197.1\|15611_16379_+	7-alpha-hydroxysteroid dehydrogenase	A0A0M4JSW6	Mollivirus	5.6e-09	34.4
AXQ96198.1\|16419_17214_+	SDR family oxidoreductase	NA	NA	NA	NA
AXQ96199.1\|17260_17587_+	hypothetical protein	NA	NA	NA	NA
AXQ96200.1\|17771_17978_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.7e-11	54.0
AXQ96201.1\|18229_18604_-	hypothetical protein	NA	NA	NA	NA
AXQ96202.1\|18700_18976_-	hypothetical protein	NA	NA	NA	NA
AXQ96203.1\|19500_19710_+	hypothetical protein	NA	NA	NA	NA
AXQ96204.1\|19888_20125_-	hypothetical protein	NA	NA	NA	NA
AXQ96205.1\|20842_21181_-	DUF2218 domain-containing protein	NA	NA	NA	NA
AXQ96206.1\|21303_22185_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
AXQ96207.1\|22181_23129_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	9.2e-46	37.0
AXQ96208.1\|23121_24066_+	enterobactin ABC transporter permease	NA	NA	NA	NA
AXQ96209.1\|24062_24821_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.8e-07	21.1
AXQ96210.1\|24975_26910_-	TonB-dependent receptor	NA	NA	NA	NA
AXQ96211.1\|27753_28449_-	FadR family transcriptional regulator	NA	NA	NA	NA
AXQ96212.1\|29565_31203_+	cytochrome C	NA	NA	NA	NA
AXQ96213.1\|31267_33751_+	trimethylamine-N-oxide reductase TorA	A0A077SK27	Escherichia_phage	1.1e-85	32.6
AXQ96214.1\|33927_34863_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
AXQ96215.1\|35091_35532_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
AXQ96216.1\|36213_37884_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
AXQ96217.1\|38027_38783_+	biliverdin-producing heme oxygenase	NA	NA	NA	NA
AXQ96218.1\|38863_41674_+	EAL domain-containing protein	B5LWN8	Feldmannia_species_virus	9.8e-19	33.1
AXQ96284.1\|41794_43315_-	glycosyl transferase family protein	NA	NA	NA	NA
AXQ96219.1\|43462_45487_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.8e-14	33.0
AXQ96220.1\|45759_47064_-	HlyC/CorC family transporter	NA	NA	NA	NA
AXQ96221.1\|47053_47482_-	hypothetical protein	NA	NA	NA	NA
AXQ96222.1\|49216_51280_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-09	26.2
AXQ96223.1\|51940_52972_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXQ96224.1\|53197_54394_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.4e-88	44.3
AXQ96225.1\|54530_55562_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AXQ96226.1\|56418_57426_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXQ96227.1\|57422_58463_+	iron ABC transporter permease	NA	NA	NA	NA
AXQ96228.1\|58459_59227_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-13	30.6
AXQ96229.1\|59231_59651_+	pseudoazurin	NA	NA	NA	NA
AXQ96230.1\|61201_61921_+	hypothetical protein	NA	NA	NA	NA
AXQ96231.1\|61917_63474_+	cobyric acid synthase	NA	NA	NA	NA
AXQ96232.1\|63470_64925_+	cobyric acid synthase	NA	NA	NA	NA
AXQ96233.1\|71774_72128_-\|transposase	transposase	NA	NA	NA	NA
AXQ96234.1\|72124_72529_-\|transposase	transposase	NA	NA	NA	NA
AXQ96285.1\|72891_73978_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.6e-47	39.5
AXQ96235.1\|73979_75806_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AXQ96236.1\|75930_78084_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
AXQ96237.1\|78098_80408_+	acetone carboxylase subunit alpha	NA	NA	NA	NA
AXQ96238.1\|80466_80970_+	acetone carboxylase subunit gamma	NA	NA	NA	NA
AXQ96239.1\|81690_81897_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.1e-10	52.4
AXQ96240.1\|81918_82290_+	DUF982 domain-containing protein	NA	NA	NA	NA
AXQ96286.1\|82453_82678_+	hypothetical protein	NA	NA	NA	NA
AXQ96241.1\|82719_83103_+	hypothetical protein	NA	NA	NA	NA
AXQ96242.1\|83219_83978_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031754

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CRISPR-Cas detection and classification

Crispr_ID: CP031754_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031754_1

29860-31875

Unclear

Consensus_repeat	Method
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CRISPRCasFinder
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CRT
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAG	PILER-CR
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	PILER-CR

27 spacers

cas2,cas1,csb2gr5,cas7,cas8u2,cas3,WYL

The CRISPR arrays of CP031754_1

>merge|CP031754|1|29860-31875|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
CCTTCAATGAGGCCGAGGTGGGAACACCTCGGATAGTCCGATAAAAGCCTACGACGGCACGCCTGTCATCATTCTTCAATGAGGCCGAGGCGTTTCCGCCTCGGAGGCCCGCGGACGCCTCAACGCCCCGGCACGGGTCTCAGAGCTGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCAGGCTCGATCCCTTGGGCGAACTTGGCAGTTGTCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGGCGGCATGAAGTCGGTAGTCCTCAAAAGCTTCGTAAGGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCCGGTGCGGTGGTGGATCGTCTTCCGCTCATGGTCAATCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGTCAGCGTCAGCTTGTCCGCCTTCTCGCTGTTGCGCTTGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCCGGGATCAGCACCGAATACACCAAGACCGGCGGCACGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCGGCAAGGGGCGCTGCACCATTAGCGCTGAACACGCCAGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCTGCTCCCGCTTGCCGTGGGCCTCCTCGGAGTTGGGGAGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGGCGGGCGACAATGCCGAGTGGCGCAGCCTGTCCGGGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGAGGATGACCTCTCGGATGCCCGTTACCTGTTCCGCACGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCGGGCGCCACGTCAAGGCGAAGACCGCGGCCCTCTACGCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGAATGGAGAAATCGCGGAAGAAGCCATAGACGGTTGTCCCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGAGGATGCCGGAAAGACGGCGCGCGCCGGATGTGGGGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCGCCCCACATGCCGACGATGAGATCCGCGAAGTTGCCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGGCCAGGACTCGCCCTCATCAGCCCACGGCTCGGCAGGGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGGTGGAGCAGGTGATGGCCTTCGCCACGTCGCGAGCGAAGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGTATATCTTCCTTAGCCCATGGATTTGGGAAGCCCGGAGGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGTCTCGATTTCGCCAGCGTCAATCAGCTTTTTGTCGCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCGCGCGGCCGAGGCGGCAGCGCCCTACGGCCTCGCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGGCCGAATGGGCGGAGGTCAGCCAGCGCAACTATCAGGCCGCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCGTGTTTTGCAGCTTTCCGCACCGCGGCGGATGAGGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGGCCGACGTGGTCCGGTCGGGCCTCTGCCAGGCCATTGTCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCTTGCGGCGCAGGTCTTCCGGCTGCTCGGCGTAGATCTCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGGTGGCTCTTGCCCCAGAGGGTATTGCCTCGAGGCAGGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGATCCGCACGGCCATGCGATGCTGCGTCCGTGTGCCAGCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCTGCGGCTTGCTCGCAAAGATGCCCGCGCCGCCCTCGCGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG

>CP031754|1|1|29860-31875|CRISPRCasFinder
CCTTCAATGAGGCCGAGGTGGGAACACCTCGGATAG	TCCGATAAAAGCCTACGACGGCACGCCTGTCATCAT
TCTTCAATGAGGCCGAGGCGTTTCCGCCTCGGAGGC	CCGCGGACGCCTCAACGCCCCGGCACGGGTCTCAGAGCT
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CAGGCTCGATCCCTTGGGCGAACTTGGCAGTTGTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCGGCATGAAGTCGGTAGTCCTCAAAAGCTTCGTAAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CCGGTGCGGTGGTGGATCGTCTTCCGCTCATGGTCAATC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TCAGCGTCAGCTTGTCCGCCTTCTCGCTGTTGCGCTT
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CCGGGATCAGCACCGAATACACCAAGACCGGCGGCAC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGCAAGGGGCGCTGCACCATTAGCGCTGAACACGCCA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCTCCCGCTTGCCGTGGGCCTCCTCGGAGTTGGGGA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCGGGCGACAATGCCGAGTGGCGCAGCCTGTCCGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGACCTCTCGGATGCCCGTTACCTGTTCCGCAC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGGCGCCACGTCAAGGCGAAGACCGCGGCCCTCTACGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AATGGAGAAATCGCGGAAGAAGCCATAGACGGTTGTCCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGCCGGAAAGACGGCGCGCGCCGGATGTGGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCCCCACATGCCGACGATGAGATCCGCGAAGTTGCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCAGGACTCGCCCTCATCAGCCCACGGCTCGGCAGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGAGCAGGTGATGGCCTTCGCCACGTCGCGAGCGAA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TATATCTTCCTTAGCCCATGGATTTGGGAAGCCCGGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TCTCGATTTCGCCAGCGTCAATCAGCTTTTTGTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCGCGGCCGAGGCGGCAGCGCCCTACGGCCTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGAATGGGCGGAGGTCAGCCAGCGCAACTATCAGGCCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGTGTTTTGCAGCTTTCCGCACCGCGGCGGATGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGACGTGGTCCGGTCGGGCCTCTGCCAGGCCATTGTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTTGCGGCGCAGGTCTTCCGGCTGCTCGGCGTAGATCTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGCTCTTGCCCCAGAGGGTATTGCCTCGAGGCAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	ATCCGCACGGCCATGCGATGCTGCGTCCGTGTGCCAGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCGGCTTGCTCGCAAAGATGCCCGCGCCGCCCTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG

>CP031754|1|1|29860-31875|CRT
CCTTCAATGAGGCCGAGGTGGGAACACCTCGGATAG	TCCGATAAAAGCCTACGACGGCACGCCTGTCATCAT
TCTTCAATGAGGCCGAGGCGTTTCCGCCTCGGAGGC	CCGCGGACGCCTCAACGCCCCGGCACGGGTCTCAGAGCT
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CAGGCTCGATCCCTTGGGCGAACTTGGCAGTTGTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCGGCATGAAGTCGGTAGTCCTCAAAAGCTTCGTAAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CCGGTGCGGTGGTGGATCGTCTTCCGCTCATGGTCAATC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TCAGCGTCAGCTTGTCCGCCTTCTCGCTGTTGCGCTT
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CCGGGATCAGCACCGAATACACCAAGACCGGCGGCAC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGCAAGGGGCGCTGCACCATTAGCGCTGAACACGCCA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCTCCCGCTTGCCGTGGGCCTCCTCGGAGTTGGGGA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCGGGCGACAATGCCGAGTGGCGCAGCCTGTCCGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGACCTCTCGGATGCCCGTTACCTGTTCCGCAC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGGCGCCACGTCAAGGCGAAGACCGCGGCCCTCTACGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AATGGAGAAATCGCGGAAGAAGCCATAGACGGTTGTCCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGCCGGAAAGACGGCGCGCGCCGGATGTGGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCCCCACATGCCGACGATGAGATCCGCGAAGTTGCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCAGGACTCGCCCTCATCAGCCCACGGCTCGGCAGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGAGCAGGTGATGGCCTTCGCCACGTCGCGAGCGAA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TATATCTTCCTTAGCCCATGGATTTGGGAAGCCCGGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TCTCGATTTCGCCAGCGTCAATCAGCTTTTTGTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCGCGGCCGAGGCGGCAGCGCCCTACGGCCTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGAATGGGCGGAGGTCAGCCAGCGCAACTATCAGGCCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGTGTTTTGCAGCTTTCCGCACCGCGGCGGATGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGACGTGGTCCGGTCGGGCCTCTGCCAGGCCATTGTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTTGCGGCGCAGGTCTTCCGGCTGCTCGGCGTAGATCTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGCTCTTGCCCCAGAGGGTATTGCCTCGAGGCAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	ATCCGCACGGCCATGCGATGCTGCGTCCGTGTGCCAGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCGGCTTGCTCGCAAAGATGCCCGCGCCGCCCTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG

>CP031754|1|1|29933-30260|PILER-CR
CTTCAATGAGGCCGAGGCGTTTCCGCCTCGGAGG	CCCGCGGACGCCTCAACGCCCCGGCACGGGTCTCAGAGCTG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAG	GCAGGCTCGATCCCTTGGGCGAACTTGGCAGTTGTCG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAG	GGCGGCATGAAGTCGGTAGTCCTCAAAAGCTTCGTAAGG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAG	GCCGGTGCGGTGGTGGATCGTCTTCCGCTCATGGTCAATCG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGTCAGCGTCAGCTTGTCCGCCTTCTCGCTGTTGCGCTTGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCCGGGATCAGCACCGAATACACCAAGACCGGCGGCACGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGCAAGGGGCGCTGCACCATTAGCGCTGAACACGCCA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCTCCCGCTTGCCGTGGGCCTCCTCGGAGTTGGGGA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCGGGCGACAATGCCGAGTGGCGCAGCCTGTCCGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGACCTCTCGGATGCCCGTTACCTGTTCCGCAC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGGCGCCACGTCAAGGCGAAGACCGCGGCCCTCTACGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AATGGAGAAATCGCGGAAGAAGCCATAGACGGTTGTCCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGCCGGAAAGACGGCGCGCGCCGGATGTGGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCCCCACATGCCGACGATGAGATCCGCGAAGTTGCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCAGGACTCGCCCTCATCAGCCCACGGCTCGGCAGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGAGCAGGTGATGGCCTTCGCCACGTCGCGAGCGAA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TATATCTTCCTTAGCCCATGGATTTGGGAAGCCCGGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TCTCGATTTCGCCAGCGTCAATCAGCTTTTTGTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCGCGGCCGAGGCGGCAGCGCCCTACGGCCTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGAATGGGCGGAGGTCAGCCAGCGCAACTATCAGGCCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGTGTTTTGCAGCTTTCCGCACCGCGGCGGATGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGACGTGGTCCGGTCGGGCCTCTGCCAGGCCATTGTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTTGCGGCGCAGGTCTTCCGGCTGCTCGGCGTAGATCTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGCTCTTGCCCCAGAGGGTATTGCCTCGAGGCAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	ATCCGCACGGCCATGCGATGCTGCGTCCGTGTGCCAGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCGGCTTGCTCGCAAAGATGCCCGCGCCGCCCTCGC


>CP031754|1|2|30372-31875|PILER-CR
	CCCGCGGACGCCTCAACGCCCCGGCACGGGTCTCAGAGCTG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAG	GCAGGCTCGATCCCTTGGGCGAACTTGGCAGTTGTCG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAG	GGCGGCATGAAGTCGGTAGTCCTCAAAAGCTTCGTAAGG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAG	GCCGGTGCGGTGGTGGATCGTCTTCCGCTCATGGTCAATCG
CTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGTCAGCGTCAGCTTGTCCGCCTTCTCGCTGTTGCGCTTGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGGCCGGGATCAGCACCGAATACACCAAGACCGGCGGCACGCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGCAAGGGGCGCTGCACCATTAGCGCTGAACACGCCA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCTCCCGCTTGCCGTGGGCCTCCTCGGAGTTGGGGA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCGGGCGACAATGCCGAGTGGCGCAGCCTGTCCGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGACCTCTCGGATGCCCGTTACCTGTTCCGCAC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGGGCGCCACGTCAAGGCGAAGACCGCGGCCCTCTACGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AATGGAGAAATCGCGGAAGAAGCCATAGACGGTTGTCCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	AGGATGCCGGAAAGACGGCGCGCGCCGGATGTGGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCCCCACATGCCGACGATGAGATCCGCGAAGTTGCC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCAGGACTCGCCCTCATCAGCCCACGGCTCGGCAGG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGAGCAGGTGATGGCCTTCGCCACGTCGCGAGCGAA
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TATATCTTCCTTAGCCCATGGATTTGGGAAGCCCGGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	TCTCGATTTCGCCAGCGTCAATCAGCTTTTTGTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGCGCGGCCGAGGCGGCAGCGCCCTACGGCCTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGAATGGGCGGAGGTCAGCCAGCGCAACTATCAGGCCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CGTGTTTTGCAGCTTTCCGCACCGCGGCGGATGAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GCCGACGTGGTCCGGTCGGGCCTCTGCCAGGCCATTGTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTTGCGGCGCAGGTCTTCCGGCTGCTCGGCGTAGATCTC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	GTGGCTCTTGCCCCAGAGGGTATTGCCTCGAGGCAG
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	ATCCGCACGGCCATGCGATGCTGCGTCCGTGTGCCAGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG	CTGCGGCTTGCTCGCAAAGATGCCCGCGCCGCCCTCGC
GCTTCAATGAGGCCGAGGCGTGCCCGCCTCGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031754.1\|AXQ96310.1\|32082_32376_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|378256
CP031754.1\|AXQ96302.1\|23961_24294_-\|stability/partitioning-determinant	unknown	unknown	unknown
CP031754.1\|AXQ96314.1\|37230_38097_-\|type-I-U-CRISPR-associated-protein-Cas8c	cas8u2	cd09765_cas8u2_CAS-I-U	gnl\|CDD\|274984
CP031754.1\|AXQ96306.1\|27219_27621_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350313
CP031754.1\|AXQ96315.1\|38089_40675_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|187827
CP031754.1\|AXQ96304.1\|25268_26297_-\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|370826
CP031754.1\|AXQ96300.1\|18346_19993_-\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
CP031754.1\|AXQ96317.1\|40783_41671_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP031754.1\|AXQ96313.1\|36199_37234_-\|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09678_cas7_CAS-I-U	gnl\|CDD\|187809
CP031754.1\|AXQ96305.1\|26977_27220_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
CP031754.1\|AXQ96307.1\|27758_28454_+\|resolvase	unknown	unknown	gnl\|CDD\|214861
CP031754.1\|AXQ96301.1\|20169_23298_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|377447
CP031754.1\|AXQ96303.1\|24290_24968_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
CP031754.1\|AXQ96308.1\|28580_28961_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378249
CP031754.1\|AXQ96312.1\|34107_36306_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
CP031754.1\|AXQ96311.1\|32379_34101_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
CP031754.1\|AXQ96316.1\|41798_42197_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378971
CP031754.1\|AXQ96309.1\|28920_29697_+\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|378053

Protein	Function_ID	Function_description	E-value
CP031754.1\|AXQ96310.1\|32082_32376_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.51281e-18
CP031754.1\|AXQ96314.1\|37230_38097_-\|type-I-U-CRISPR-associated-protein-Cas8c	gnl\|CDD\|274984	TIGR04106, hypothetical_protein_GobsU_11505, CRISPR-associated protein GSU0052/csb3, Dpsyc system. This model describes a CRISPR-associated (cas) protein unique to the Dpsyc subtype (named for Desulfotalea psychrophila), a variant type I-C subtype, although not universal to the that subtype. Members of this family occur in CRISPR loci of Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, Rhodospirillum centenum SW, Planctomyces limnophilus DSM 3776, and Methylosinus trichosporium OB3b.	2.55666e-60
CP031754.1\|AXQ96306.1\|27219_27621_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350313	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.08e-58
CP031754.1\|AXQ96315.1\|38089_40675_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187827	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DNA helicase Cas3; This protein includes both DEAH and HD motifs; signature gene for Type I.	1.49332e-126
CP031754.1\|AXQ96304.1\|25268_26297_-\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	5.26243e-97
CP031754.1\|AXQ96300.1\|18346_19993_-\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	2.58236e-23
CP031754.1\|AXQ96317.1\|40783_41671_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	4.59238e-12
CP031754.1\|AXQ96313.1\|36199_37234_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|187809	cd09678, Csb1_I-U, CRISPR/Cas system-associated protein Csb1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Contains several motifs similar to Cas7 family; also known as GSU0053 family.	6.73178e-47
CP031754.1\|AXQ96305.1\|26977_27220_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	1.75761e-11
CP031754.1\|AXQ96307.1\|27758_28454_+\|resolvase	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	2.12117e-29
CP031754.1\|AXQ96301.1\|20169_23298_-\|glycosyltransferase	gnl\|CDD\|377447	pfam05045, RgpF, Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.	5.53268e-34
CP031754.1\|AXQ96303.1\|24290_24968_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.18569e-28
CP031754.1\|AXQ96308.1\|28580_28961_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|378249	pfam09722, DUF2384, Protein of unknown function (DUF2384). Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. The function is unknown.	2.37038e-07
CP031754.1\|AXQ96312.1\|34107_36306_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	3.27612e-51
CP031754.1\|AXQ96309.1\|28920_29697_+\|RES-domain-containing-protein	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	5.03609e-26
CP031754.1\|AXQ96316.1\|41798_42197_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|378971	pfam12844, HTH_19, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.	8.72968e-06
CP031754.1\|AXQ96311.1\|32379_34101_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.14543e-116

>CP031754.1|AXQ96309.1|28920_29697_+|RES-domain-containing-protein
MSLPTWTPDALRSEARGLSGLAWRLVEAQHQVSTMKLVDGAEQDILEAILDETKPPVPEECRHLGYLLSTPFRYRPYPHGSRFRRAGLTPGVWYGAEAPETAVAEMVFYRFLFYAESPATPFPDNAAEYTAFSVKVATPLSLDLTSGKLAHDAMRWTHLTDYAPCQELADTARDTGVEVIRYRSVRDPAEGANLAVLTCHAFAARDHSERQTWHIRIGSGGAQVRREFPRHRMEFPTNSFDADARLHGMNWDRPSVQR
>CP031754.1|AXQ96308.1|28580_28961_+|XRE-family-transcriptional-regulator
MHDTAKLAPARDRGAVLTKATLNAADRLGLSQRELAEIIGLSEATVSRMKRGAATLEDGSAHFQLAALLVRIFRSLDAIVGGDEGVARAWMKAPNTALGVPPVERISKISGLVDVATYLDARRAPL
>CP031754.1|AXQ96307.1|27758_28454_+|resolvase
MKFVTYLRVSTERQGQSGLGLEAQRAAVAAHVAARGEVVAEFIEIESGKRSDRPELAKALAVAKRAGAILLIAKLDRLARNVAFIANLLESGVEVTAADMPEANRFVLHIMAAVAEQEGRAISERTRAALAAARARGVKLGWSMPERKDEQRRASASGALQNVLKADQHAASVLHLVRQHVEQGASLRQVASQLNAQGVRTARGGAWHAGTVRNILARSLEGRIERTGCAL
>CP031754.1|AXQ96306.1|27219_27621_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MYLLDTNVISAVRRPDRAPQVAAWLAGRNEADLFLSVITLGEIERGITRQEQGNPAFAADLQAWLDRTMRLFSDRILPFEAEDARIWGRLSSRIGHNGADLMIAATALARGAVVVTGNVDDFRPTGVRIEDPF
>CP031754.1|AXQ96305.1|26977_27220_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MWTLQDAKNRFSSVVEAALAGVPQEVSRRGRPAVVVLSVEEYHRLLSGAQGNRGSFADHLMAFPGDGLERAEVVPRDVGF
>CP031754.1|AXQ96304.1|25268_26297_-|RepB-family-plasmid-replication-initiator-protein
MSTPLLPDRHPQGDFFVCDIFDAAPKGDIGSMEHPIFSLSTKPDTRSRRYEHRGLTVEIKPSSDGLATVHDRDVLIFCISQLIHGMNNGKEPSQTVRFQASDLLKATNRMTTGRGYELLKAAMERLAGTRISTNITTGGQEIFETFGLIERARIVRETREGRMQEVEVKLSDWVFNAIRAQEVLTLSRDYFRLRRPLERRLYELARKHCGRQTEWRIGLELLQKKCGSGSPLFEFKRLVGKIVTEDERHSHFPDYSIRFTEDENGIVFQSRGSVPVPSSEVFEGHLDSSVYEDARAAAPGWDVRYLEQEWRRWCAAEEIEPKVPERHFVKFCATWFEKRGRP
>CP031754.1|AXQ96303.1|24290_24968_-|ParA-family-protein
MPVISFANPKGGAGKTTTALILATQLAENGASVSIVDADPERWISQWASLPGKPDAIRIVNGVTEDSIVDVVEEEAARCQFVIVDLEGTASLMVANAIGMSDLVLIPAQGSNMDAKGGAKTIRLIANQSRLARRKIPHRVVLTRTSAAVRSRTLRNVQEQLEASGIEVLQTSIVERAAFRDLFDFGGTLSSLDPAQVSNLPKAIENAREFAGEVVTLLKTERELA
>CP031754.1|AXQ96302.1|23961_24294_-|stability/partitioning-determinant
MSRQRADLGFSSALDDLGNFGPEPAPRPKPSPGEAKQAAEAAGFRSRDPQPPSEPAKPLRRRRTGRNAQFNLKARPETIEAFCSVADAHGWGLGETLEKAVELLLDRYGK
>CP031754.1|AXQ96301.1|20169_23298_-|glycosyltransferase
MNEPTDHAAIIHVWHLDVLDDLTEALEHLHETADQFVTLPVSFGQEQRDRVTAAFPKAMIVEVENRGQDIGALFQLMQKVNLGRYDFICKIHTKKGPNMPEEWRRALLDGVLGSKRQVTHIVESFRADPKVMLAGARQLFVFGPAYLEPNAEKLAENYAPLIGDFDVRSEDWGFIAGTCFWIRTSILQDMAACAVEFLPADYVTDGAPAHAAERMFGLSVALRGGTVLLQDLRFADRLPEAETGFPADLPRNWRRLAQILTPLAVNLFIRPRYRPTEAQPAPRRRVAVFASYTGDGILPPQVVPYLEGLRHLTEAIVVVCDNDLQSGEAAKLSGLAAHVITGRHGEYDFGSYKRGVAWLEKAGMLTKADDLILCNDSCYGPIGSFAPMFAEMEAKGLDFWGATDSREIDYHLQSYFVVLTRRVFSSETFRKFISSVEKQPNVQEVIKKYEIGMTQTLVKAGFSSGAMVANTLAGVHEKDPTSRNLTLFPLYTLNRGLPLLKVKALTKPSSNANGAAAIFDWLAENAPDIHAVAMSEFEVMKFAATSKIGFSVIMPTYNRAWCIGRAIRAVLAQTHRNFELIIVDDGSTDDTEQEVRRRFPDEIASGRIVYVRLERNVGVCKARNIGMMRARADWIAYADSDNEVRPYFLNMFAHAIIQHPGKDTVYGRFINVNSGNIIGIAFENGDVLRGNFIDLGVFAHRRSLMGKLGCFDDSLRRLVDWDLVIRYTRHDVPSYIDKILLDYVDEERNDRISVGESYVKANIQVHRKHSPLPTVSTIIVSYNHLEFIVEAIESALAQKGNFHHEILLSDDGSTDGTARIMARYAEKYPMRIRNISRGGNHGVSANYRHCFAEAQGEFVAVLEGDDYWSDPEKLAKQAAFLREHAEAAMVLSRIELLDMKSGKRRLLKRQEGLPNIISGKHFSENQHLNLIVNFSCCMFRTDIMQHLPDMMYDPRLSEIPLAFYLDRLGGIGFLSDVMSTYRLNDKSVWTGASMANKHRQAIDVRQTALRVARPIYQATIQRHIEARQKQLEAELFKNAVAA
>CP031754.1|AXQ96300.1|18346_19993_-|IS1634-family-transposase
MFIRITENGGRRYLQIMESYRNDAGKPRSRVIANLGRIDDRPDGHLDSLIRGLCKVTGRDAPEALRIEQEPGRAFGDVFALHELWKDLGFDRALARALRSGKRQLDVEALVRAMVFNRLCEPDSKLGCLRWLETVAMPAMPETVTHQHLLRAMDALMDHAERVEIELAKQIRPLVDRDLAVVFYDLTTVRIHGEAEIEDDLRAYGMNKEKGGIARQFVLGVVQTAEGLPLMHTVHPGNVAETKTLQAMLTTVLQRFPVERVVLVADRGLLSLDNIDTLTTLADQGGRKLEFILAVPARRYGELVETFRGLAFDKTGLSEARFAGHRLIVAHDPLRAAEQSEKRRARIAELEVMAERMVGKLNAQDAGQSDRGRRASDRGAYSRFTRAVAEAELTRFLRADFTADRFSWSLDETAIHEAELFDGKLALLTNAPDLTPAEAVARYKALADIERGFRVLKSDIEIAPVHHRLPDRIRAHALICFLALVLYRVMRMRLKAKGHTASPRTALDLLARIQRHRAKIGERTVNGLSVTTPQQMELFDTLNLPKPL
>CP031754.1|AXQ96310.1|32082_32376_-|CRISPR-associated-endonuclease-Cas2
MPSERLYIVTYDIADRKRWRKVFATMEGFGRWLQLSVFQCRLSARRRGELSARLSDIIRKDEDHVLIIDVGPAGNIEPHVESLGRSYSALERKAIVI
>CP031754.1|AXQ96311.1|32379_34101_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSDVLQGELLLPSPLGEEDVPLVPVRMINEWVYCPRLAYLMWIEAEWADTADTEDGRRVHRRADRPSGSLPQPGDAVVEEEPAPFRCRSVTLSSTRLGMVGKMDVVEGEGRHAVPVELKRGARPHVAQGAHDPERVQLCAQALLLEEAGFEVAEGFIWFAASRERVPVLFDSELREKTLRAAADLRLTAATGRRPPPLENSPKCPRCAVAGICLPDEVNFFRDGALPRPLNPADDPALPLHVQAQGACLRKKGETLVVEADEEKTDVPLIDVSSVSLYGRVSLTTPALHELMRREIPVAWHSTGGWLMGHTVGTGTRNVTIRAAQFRVADDPPRSLCIAAGLVAAKIRNQRTILRRNWKGGAEDPALADVMDRLKQLAAKAPHAGASANLLGIEGEAAALYFRHFPKLIVPSKSETVTFDFEGRNRRPPADPVNALLSFSYALAVRLFVSALVSAGFDPYQGFYHRPRHGRPALALDMMEPFRPLLCDSTVLMVINNGEVGPSDFVTLGRSCSLTPSGRRSLVAAWERRLDQETTHPIFGYRLTTRRLIDVQCRLLARHIAGEIPEMPHYVPR
>CP031754.1|AXQ96312.1|34107_36306_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MPRRRPPLSASARPAPWPLTRRARKTTHDPPRRRPDAMVALALEVRFLDQRYHGTPDWPPSPGRLFQALVAGAASDGTGCEARRAALHWFETLEAPVILAPRTEPGRAYISYVPNNDGDAEGDPTDPSRIGKRIQARLIAEDAPLIYLWSGLEAVPDGVADLAERLCQLGRGIDPAYARAVELEEEAVAALMADHPGSVHRPAGSGPDGLDCPLPGSLASLEARHEAFLKRLAVQGAGRKSRIEFSNPPRARFGRVRYDRAAERILFDLRDEKGHFWAIDAAHAGQLVSDWLKDAAERLGPTLAPLAERFVIGRGAGPRDLDRRIRAFALPTLRQHGDRNIRRLAVEIPPDCPIRRDDLVWALGGSADFVGKWGQPVQTEDHRMLERYCQASSRWQSEIPLALPVQRRRLSRGETKAGSERAREEAAARAAVATALRHAGVHAKVAAIGVRKEPYADQGVMAERFAQGTRFDKHSLWHAEVEFLEPVEGPLLLGNGRFAGLGLMRPAQDGAKNDILAFRILEGLEAPDAENLAQALRRAVMARCGANAPAFITGHENDGSPSRPGRNGHVAFVADLPRRRLLVIPPHLADHRAQGTGEDAAMRDLADALQGFTTLRAGRSGCLQLAADPVQDDDPLFCRARVWASVTRYQATHHPRGRPLDVVLKDDLSRELSRRGLPAAEVSVLKSGFNPGGGLFAHLRLTFSHPVQGPVLLGRTLHKGGGLFAAVMAPDR
>CP031754.1|AXQ96313.1|36199_37234_-|type-I-U-CRISPR-associated-protein-Cas7
MTTTPSHEDIAHWIAKDGPVALHIREMLEPVEGPGMPIFPATYANIGYNIDTLSDGTKIASIDSVGSQANRIEPLFKDAPLASLVPQIDITYGNDKTLSILEAGHRLGDAVIRCTELASEAHQAFIALLDRGDATLIARLAPTSLVFGAWDSRDTQAKLPRIVQSVIRAWDVEPLTRSAQYTPALDYSALEVFSEAEREKQEGKAGSQLAERGYVHVPSTGQHGGVIARGVIRRDVTVNLVALRRLQGEESELLQRYVLGLALVAATAPQDGFLRAGCQLVPAGPLTVQRVARDGTRTDIALDHATALSYAQKAASAFGVGASRTVAFDKTRAKDDARPAQKKA
>CP031754.1|AXQ96314.1|37230_38097_-|type-I-U-CRISPR-associated-protein-Cas8c
MAESVIPVDPANPGQVFACLGFMEVAEILCGPVEGGFSRTLGQERFLLGSTRSEDPVLDVLTFLTKAEVRVATPDRQNASFGKALFKAHAEAYPPGVYPYNQPSKQDRYPAVLVSGQTMVVIDHWADAARSDAMKFWAGASGYPGVALTRDALALLPSDPARMRLSPFAFSAPQSSSFRFDWRRDYVPIDAGFSPNRHDGITMVGYPVVELLAAIGLRYARPAREHRLSYRYTVWEERLPLSLARAALGASQPLWPGMGHRRFRMTLSWPGQEGQAKCITRVDEETPA
>CP031754.1|AXQ96315.1|38089_40675_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MCEAVMCDFARRFAALTTREGRPAFSPFPWQERLHARLAAGEIPTTVDLPTGLGKTSVIACWLLAHASHPTFLNPALPRRLVYVVDRRAVVDQASEEVARFTGTWKAAAGPAAPDITIATLRGQHIDSGEWARHPAKLSVIVGTVDMIGSRLLFSGYGVSPRMRPVHAGLLGLDTLLVLDEAHLAPVFADVVRTVAADPGLRGELAPPVAPFRMMALSATQRPHDAATAPFRLDEADHAHPVIAQRLAAEKTLERREGASPEDLGAAAEDLVSLGHRIVIFVDSRQTAEKVARLLAKRHGDDAVLLFTGARRGWERTRAEQQLREAGFLADSEPPAAPRFLVATAAGEVGVDLDADHAVMDLVSWERMVQRLGRVNRRGNGKARVIVCDAGQEEIRGASLSDCRALLDRLGDAGPAALAALAAEEPDLAERASSGRPLRPALVRAELDAWSLTGLREHPGRAPVAPFLRGWVEDEVQLRLVWRHHLPVRADNSQSLSECTAFFETAPVHLSEVLEAEIGQVSDWLKKRIRMRHDALEQDPPATAVGLVLDQDSQVVRVVTLPELRTILNGPKLQFDRFLGSLVGGTLVLDARFGGLSPWGLLDAGEDVPAVTADGGNAPTDWAAVIGFSVDRETDPAETEHGSRRPERMRFPLGAEEDNAPALVVRGPAREADETRADARSRGRPVLLHNHLEHVRTEVAALSQALGLPERAGAILDHAARLHDVGKAALLWQQAMHAPAGGPWAKTRSGDGRALAGYRHEFGSLLAAEEDPELAPLAAEDRDLVLHLIATHHGWARPFIPAHGGDRGPPSLNETVAHAAALRFARLQRRWGPWGLAWWEAVFRAADWAASVREEEDRADG
>CP031754.1|AXQ96317.1|40783_41671_+|WYL-domain-containing-protein
MLSDVSQPQRERLFHIDFRANFRGQVSRQDLIARFGIREAAATRDLALYRALAPGNLEFDGSAKIYRRAEEFTPLFEHDPFRSLVAIAEGLGDAEVGDLSPHVRTEHPLRLNVPAVEIIATLTRAIVGGAAVRVVYHSLTSGRTVREIVPHALVDTAARWHVRAYDRRRLRFSDFVLTRIEDAESVSGATSPRERREADDQWMRMVELDLVPHPALARSEPVERDFGMTNGRLHVRLRAALCGYALVHWSVDASADHHMDPARHHLWLRNREALYGVENLGIAPGFDPGDATRSA
>CP031754.1|AXQ96316.1|41798_42197_+|XRE-family-transcriptional-regulator
MPKKPHSGTRLARFLEKRILEMRPKTQAEIASETGFVNPNMLSMIKSGTSKLALDRVPALAKALEADPGYLMRLALEQAEGDTAASALVEIFGTPVSANERAWLEEIRAASDHSDPRLTSRSRAALRAIFGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031754_1	1.1\|29896\|36\|CP031754\|CRISPRCasFinder,CRT	29896-29931	36	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	29896-29931	0	1.0
CP031754_1	1.2\|29968\|39\|CP031754\|CRISPRCasFinder,CRT	29968-30006	39	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	29968-30006	0	1.0
CP031754_1	1.3\|30043\|35\|CP031754\|CRISPRCasFinder,CRT	30043-30077	35	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30043-30077	0	1.0
CP031754_1	1.4\|30114\|37\|CP031754\|CRISPRCasFinder,CRT	30114-30150	37	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30114-30150	0	1.0
CP031754_1	1.5\|30187\|39\|CP031754\|CRISPRCasFinder,CRT	30187-30225	39	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30187-30225	0	1.0
CP031754_1	1.6\|30262\|37\|CP031754\|CRISPRCasFinder,CRT	30262-30298	37	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30262-30298	0	1.0
CP031754_1	1.7\|30335\|37\|CP031754\|CRISPRCasFinder,CRT	30335-30371	37	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30335-30371	0	1.0
CP031754_1	1.8\|30408\|38\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30408-30445	38	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30408-30445	0	1.0
CP031754_1	1.9\|30482\|38\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30482-30519	38	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30482-30519	0	1.0
CP031754_1	1.10\|30556\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30556-30590	35	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30556-30590	0	1.0
CP031754_1	1.11\|30627\|37\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30627-30663	37	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30627-30663	0	1.0
CP031754_1	1.12\|30700\|39\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30700-30738	39	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30700-30738	0	1.0
CP031754_1	1.13\|30775\|39\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30775-30813	39	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30775-30813	0	1.0
CP031754_1	1.14\|30850\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30850-30884	35	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30850-30884	0	1.0
CP031754_1	1.15\|30921\|37\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30921-30957	37	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30921-30957	0	1.0
CP031754_1	1.16\|30994\|37\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30994-31030	37	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30994-31030	0	1.0
CP031754_1	1.17\|31067\|38\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31067-31104	38	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31067-31104	0	1.0
CP031754_1	1.18\|31141\|38\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31141-31178	38	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31141-31178	0	1.0
CP031754_1	1.19\|31215\|36\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31215-31250	36	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31215-31250	0	1.0
CP031754_1	1.20\|31287\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31287-31321	35	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31287-31321	0	1.0
CP031754_1	1.21\|31358\|41\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31358-31398	41	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31358-31398	0	1.0
CP031754_1	1.22\|31435\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31435-31469	35	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31435-31469	0	1.0
CP031754_1	1.23\|31506\|39\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31506-31544	39	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31506-31544	0	1.0
CP031754_1	1.24\|31581\|39\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31581-31619	39	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31581-31619	0	1.0
CP031754_1	1.25\|31656\|36\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31656-31691	36	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31656-31691	0	1.0
CP031754_1	1.26\|31728\|38\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31728-31765	38	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31728-31765	0	1.0
CP031754_1	1.27\|31802\|38\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31802-31839	38	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	31802-31839	0	1.0
CP031754_1	1.28\|29967\|41\|CP031754\|PILER-CR	29967-30007	41	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	29967-30007	0	1.0
CP031754_1	1.29\|30042\|37\|CP031754\|PILER-CR	30042-30078	37	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30042-30078	0	1.0
CP031754_1	1.30\|30113\|39\|CP031754\|PILER-CR	30113-30151	39	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30113-30151	0	1.0
CP031754_1	1.31\|30186\|41\|CP031754\|PILER-CR	30186-30226	41	NZ_CP031754	Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence	30186-30226	0	1.0
CP031754_1	1.20\|31287\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31287-31321	35	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1129295-1129329	5	0.857
CP031754_1	1.20\|31287\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31287-31321	35	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	683827-683861	5	0.857
CP031754_1	1.10\|30556\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30556-30590	35	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	174421-174455	9	0.743
CP031754_1	1.19\|31215\|36\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31215-31250	36	NZ_CP049248	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed2, complete sequence	116825-116860	9	0.75
CP031754_1	1.20\|31287\|35\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	31287-31321	35	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1382510-1382544	9	0.743
CP031754_1	1.15\|30921\|37\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30921-30957	37	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	547341-547377	10	0.73
CP031754_1	1.15\|30921\|37\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30921-30957	37	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	70912-70948	10	0.73
CP031754_1	1.15\|30921\|37\|CP031754\|CRISPRCasFinder,CRT,PILER-CR	30921-30957	37	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	256756-256792	11	0.703

1. spacer 1.1|29896|36|CP031754|CRISPRCasFinder,CRT matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

tccgataaaagcctacgacggcacgcctgtcatcat	CRISPR spacer
tccgataaaagcctacgacggcacgcctgtcatcat	Protospacer
************************************

2. spacer 1.2|29968|39|CP031754|CRISPRCasFinder,CRT matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcggacgcctcaacgccccggcacgggtctcagagct	CRISPR spacer
ccgcggacgcctcaacgccccggcacgggtctcagagct	Protospacer
***************************************

3. spacer 1.3|30043|35|CP031754|CRISPRCasFinder,CRT matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

caggctcgatcccttgggcgaacttggcagttgtc	CRISPR spacer
caggctcgatcccttgggcgaacttggcagttgtc	Protospacer
***********************************

4. spacer 1.4|30114|37|CP031754|CRISPRCasFinder,CRT matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gcggcatgaagtcggtagtcctcaaaagcttcgtaag	CRISPR spacer
gcggcatgaagtcggtagtcctcaaaagcttcgtaag	Protospacer
*************************************

5. spacer 1.5|30187|39|CP031754|CRISPRCasFinder,CRT matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

ccggtgcggtggtggatcgtcttccgctcatggtcaatc	CRISPR spacer
ccggtgcggtggtggatcgtcttccgctcatggtcaatc	Protospacer
***************************************

6. spacer 1.6|30262|37|CP031754|CRISPRCasFinder,CRT matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

tcagcgtcagcttgtccgccttctcgctgttgcgctt	CRISPR spacer
tcagcgtcagcttgtccgccttctcgctgttgcgctt	Protospacer
*************************************

7. spacer 1.7|30335|37|CP031754|CRISPRCasFinder,CRT matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

ccgggatcagcaccgaatacaccaagaccggcggcac	CRISPR spacer
ccgggatcagcaccgaatacaccaagaccggcggcac	Protospacer
*************************************

8. spacer 1.8|30408|38|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

cggcaaggggcgctgcaccattagcgctgaacacgcca	CRISPR spacer
cggcaaggggcgctgcaccattagcgctgaacacgcca	Protospacer
**************************************

9. spacer 1.9|30482|38|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

ctgctcccgcttgccgtgggcctcctcggagttgggga	CRISPR spacer
ctgctcccgcttgccgtgggcctcctcggagttgggga	Protospacer
**************************************

10. spacer 1.10|30556|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gcgggcgacaatgccgagtggcgcagcctgtccgg	CRISPR spacer
gcgggcgacaatgccgagtggcgcagcctgtccgg	Protospacer
***********************************

11. spacer 1.11|30627|37|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

aggatgacctctcggatgcccgttacctgttccgcac	CRISPR spacer
aggatgacctctcggatgcccgttacctgttccgcac	Protospacer
*************************************

12. spacer 1.12|30700|39|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgccacgtcaaggcgaagaccgcggccctctacgc	CRISPR spacer
cgggcgccacgtcaaggcgaagaccgcggccctctacgc	Protospacer
***************************************

13. spacer 1.13|30775|39|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

aatggagaaatcgcggaagaagccatagacggttgtccc	CRISPR spacer
aatggagaaatcgcggaagaagccatagacggttgtccc	Protospacer
***************************************

14. spacer 1.14|30850|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

aggatgccggaaagacggcgcgcgccggatgtggg	CRISPR spacer
aggatgccggaaagacggcgcgcgccggatgtggg	Protospacer
***********************************

15. spacer 1.15|30921|37|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

cgccccacatgccgacgatgagatccgcgaagttgcc	CRISPR spacer
cgccccacatgccgacgatgagatccgcgaagttgcc	Protospacer
*************************************

16. spacer 1.16|30994|37|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gccaggactcgccctcatcagcccacggctcggcagg	CRISPR spacer
gccaggactcgccctcatcagcccacggctcggcagg	Protospacer
*************************************

17. spacer 1.17|31067|38|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gtggagcaggtgatggccttcgccacgtcgcgagcgaa	CRISPR spacer
gtggagcaggtgatggccttcgccacgtcgcgagcgaa	Protospacer
**************************************

18. spacer 1.18|31141|38|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

tatatcttccttagcccatggatttgggaagcccggag	CRISPR spacer
tatatcttccttagcccatggatttgggaagcccggag	Protospacer
**************************************

19. spacer 1.19|31215|36|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

tctcgatttcgccagcgtcaatcagctttttgtcgc	CRISPR spacer
tctcgatttcgccagcgtcaatcagctttttgtcgc	Protospacer
************************************

20. spacer 1.20|31287|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

cgcgcggccgaggcggcagcgccctacggcctcgc	CRISPR spacer
cgcgcggccgaggcggcagcgccctacggcctcgc	Protospacer
***********************************

21. spacer 1.21|31358|41|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gccgaatgggcggaggtcagccagcgcaactatcaggccgc	CRISPR spacer
gccgaatgggcggaggtcagccagcgcaactatcaggccgc	Protospacer
*****************************************

22. spacer 1.22|31435|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

cgtgttttgcagctttccgcaccgcggcggatgag	CRISPR spacer
cgtgttttgcagctttccgcaccgcggcggatgag	Protospacer
***********************************

23. spacer 1.23|31506|39|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gccgacgtggtccggtcgggcctctgccaggccattgtc	CRISPR spacer
gccgacgtggtccggtcgggcctctgccaggccattgtc	Protospacer
***************************************

24. spacer 1.24|31581|39|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

cttgcggcgcaggtcttccggctgctcggcgtagatctc	CRISPR spacer
cttgcggcgcaggtcttccggctgctcggcgtagatctc	Protospacer
***************************************

25. spacer 1.25|31656|36|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gtggctcttgccccagagggtattgcctcgaggcag	CRISPR spacer
gtggctcttgccccagagggtattgcctcgaggcag	Protospacer
************************************

26. spacer 1.26|31728|38|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

atccgcacggccatgcgatgctgcgtccgtgtgccagc	CRISPR spacer
atccgcacggccatgcgatgctgcgtccgtgtgccagc	Protospacer
**************************************

27. spacer 1.27|31802|38|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

ctgcggcttgctcgcaaagatgcccgcgccgccctcgc	CRISPR spacer
ctgcggcttgctcgcaaagatgcccgcgccgccctcgc	Protospacer
**************************************

28. spacer 1.28|29967|41|CP031754|PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

cccgcggacgcctcaacgccccggcacgggtctcagagctg	CRISPR spacer
cccgcggacgcctcaacgccccggcacgggtctcagagctg	Protospacer
*****************************************

29. spacer 1.29|30042|37|CP031754|PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gcaggctcgatcccttgggcgaacttggcagttgtcg	CRISPR spacer
gcaggctcgatcccttgggcgaacttggcagttgtcg	Protospacer
*************************************

30. spacer 1.30|30113|39|CP031754|PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggcatgaagtcggtagtcctcaaaagcttcgtaagg	CRISPR spacer
ggcggcatgaagtcggtagtcctcaaaagcttcgtaagg	Protospacer
***************************************

31. spacer 1.31|30186|41|CP031754|PILER-CR matches to NZ_CP031754 (Rhodobacter sphaeroides strain EBL0706 plasmid p.C, complete sequence) position: , mismatch: 0, identity: 1.0

gccggtgcggtggtggatcgtcttccgctcatggtcaatcg	CRISPR spacer
gccggtgcggtggtggatcgtcttccgctcatggtcaatcg	Protospacer
*****************************************

32. spacer 1.20|31287|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 5, identity: 0.857

cgcgcggccgaggcggcagcgccctacggcctcgc-	CRISPR spacer
cgcgcggccgaggcggcggcggcctac-gccgggct	Protospacer
*****************.*** ***** ***  **

33. spacer 1.20|31287|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 5, identity: 0.857

cgcgcggccgaggcggcagcgccctacggcctcgc-	CRISPR spacer
cgcgcggccgaggcggcggcggcctac-gccgggct	Protospacer
*****************.*** ***** ***  **

34. spacer 1.10|30556|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 9, identity: 0.743

gcgggcgacaatgccgagtggcgcagcctgtccgg	CRISPR spacer
gatggcgagaatgccgagttgcgcagccggggcca	Protospacer
*  ***** ********** ******** *  * .

35. spacer 1.19|31215|36|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049248 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.75

tctcgatttcgccagcgtcaatcagctttttgtcgc	CRISPR spacer
gcataacctcgccatcgtcaatcagcttattgtcgt	Protospacer
 * ..*..****** ************* ******.

36. spacer 1.20|31287|35|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

cgcgcggccgaggcggcagcgccctacggcctcgc	CRISPR spacer
gccccggccgaggcggcagcgcccgccggcaccag	Protospacer
  * ********************  **** .*.

37. spacer 1.15|30921|37|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 10, identity: 0.73

cgccccacatgccgacgatgagatccgcgaagttgcc	CRISPR spacer
cattggtcatgacgacgatgagatcggcgaagttgga	Protospacer
*...   **** ************* *********

38. spacer 1.15|30921|37|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.73

cgccccacatgccgacgatgagatccgcgaagttgcc	CRISPR spacer
cattggtcatgacgacgatgagatcggcgaagttgga	Protospacer
*...   **** ************* *********

39. spacer 1.15|30921|37|CP031754|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 11, identity: 0.703

cgccccacatgccgacgatgagatccgcgaagttgcc	CRISPR spacer
cattggtcatgacgacgatgagatcggcgaagttcga	Protospacer
*...   **** ************* ********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP031750

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP031750_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031750_1

1372946-1373065

Orphan

Consensus_repeat	Method
CCCGGAACGTCCTCGGCCACGAACGCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031750_1

>merge|CP031750|1|1372946-1373065|CRISPRCasFinder
CCCGGAACGTCCTCGGCCACGAACGCCGCGGAAGTATCGCTCCGTCAGCGGGTTGCCAGCGCCTCTTGAAGGATGCGGCGAACAAGATCGCCCGGAACGTCCTCGGCCACGAACGCCGCG

>CP031750|1|1|1372946-1373065|CRISPRCasFinder
CCCGGAACGTCCTCGGCCACGAACGCCGCG	GAAGTATCGCTCCGTCAGCGGGTTGCCAGCGCCTCTTGAAGGATGCGGCGAACAAGATCG
CCCGGAACGTCCTCGGCCACGAACGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP031750.1\|AXQ95088.1\|1381269_1382100_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
CP031750.1\|AXQ93560.1\|1374953_1376525_+\|hypothetical-protein	unknown	unknown	unknown
CP031750.1\|AXQ93561.1\|1377635_1378964_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226911
CP031750.1\|AXQ93555.1\|1371921_1372659_+\|precorrin-6A-synthase-(deacetylating)	unknown	unknown	gnl\|CDD\|236218
CP031750.1\|AXQ93549.1\|1366626_1367361_+\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|180341
CP031750.1\|AXQ93551.1\|1368067_1368811_-\|cobalt-precorrin-6A-reductase	unknown	unknown	gnl\|CDD\|236144
CP031750.1\|AXQ93564.1\|1382112_1383144_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380501
CP031750.1\|AXQ93558.1\|1374098_1374695_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|184411
CP031750.1\|AXQ95085.1\|1369969_1370350_+\|precorrin-methylase	unknown	unknown	gnl\|CDD\|376648
CP031750.1\|AXQ95086.1\|1376539_1377460_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
CP031750.1\|AXQ93556.1\|1372755_1372860_+\|hypothetical-protein	unknown	unknown	unknown
CP031750.1\|AXQ93562.1\|1380294_1380570_+\|hypothetical-protein	unknown	unknown	unknown
CP031750.1\|AXQ93552.1\|1368809_1369973_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	unknown	unknown	gnl\|CDD\|225151
CP031750.1\|AXQ95087.1\|1378933_1380070_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379402
CP031750.1\|AXQ93548.1\|1366000_1366630_+\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|181352
CP031750.1\|AXQ93559.1\|1374829_1374964_+\|hypothetical-protein	unknown	unknown	unknown
CP031750.1\|AXQ93563.1\|1380729_1381071_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
CP031750.1\|AXQ93550.1\|1367357_1368092_+\|precorrin-3B-C(17)-methyltransferase	unknown	unknown	gnl\|CDD\|381173
CP031750.1\|AXQ93554.1\|1371125_1371848_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|235711
CP031750.1\|AXQ93553.1\|1370346_1371129_+\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|225430

Protein	Function_ID	Function_description	E-value
CP031750.1\|AXQ95088.1\|1381269_1382100_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.94583e-75
CP031750.1\|AXQ93561.1\|1377635_1378964_+\|HlyC/CorC-family-transporter	gnl\|CDD\|226911	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism].	2.70467e-171
CP031750.1\|AXQ93555.1\|1371921_1372659_+\|precorrin-6A-synthase-(deacetylating)	gnl\|CDD\|236218	PRK08284, PRK08284, precorrin 6A synthase; Provisional.	1.65104e-125
CP031750.1\|AXQ93549.1\|1366626_1367361_+\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|180341	PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed.	5.24713e-107
CP031750.1\|AXQ95086.1\|1376539_1377460_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	3.91332e-119
CP031750.1\|AXQ93564.1\|1382112_1383144_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380501	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.25589e-93
CP031750.1\|AXQ93558.1\|1374098_1374695_-\|shikimate-kinase	gnl\|CDD\|184411	PRK13946, PRK13946, shikimate kinase; Provisional.	5.18842e-100
CP031750.1\|AXQ95085.1\|1369969_1370350_+\|precorrin-methylase	gnl\|CDD\|376648	pfam01890, CbiG_C, Cobalamin synthesis G C-terminus. Members of this family are involved in cobalamin synthesis. The protein encoded by Synechocystis sp.cbiH represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyze adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyzes a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process. Within the cobalamin synthesis pathway CbiG catalyzes the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.	2.36618e-19
CP031750.1\|AXQ93551.1\|1368067_1368811_-\|cobalt-precorrin-6A-reductase	gnl\|CDD\|236144	PRK08057, PRK08057, cobalt-precorrin-6x reductase; Reviewed.	2.94057e-103
CP031750.1\|AXQ93552.1\|1368809_1369973_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	4.40811e-55
CP031750.1\|AXQ95087.1\|1378933_1380070_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	0.00051275
CP031750.1\|AXQ93548.1\|1366000_1366630_+\|precorrin-8X-methylmutase	gnl\|CDD\|181352	PRK08285, cobH, precorrin-8X methylmutase; Reviewed.	1.47692e-122
CP031750.1\|AXQ93563.1\|1380729_1381071_-\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	1.8265e-22
CP031750.1\|AXQ93550.1\|1367357_1368092_+\|precorrin-3B-C(17)-methyltransferase	gnl\|CDD\|381173	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH). Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.	3.17865e-117
CP031750.1\|AXQ93554.1\|1371125_1371848_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|235711	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase.	1.67048e-116
CP031750.1\|AXQ93553.1\|1370346_1371129_+\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|225430	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].	1.80387e-132

>CP031750.1|AXQ93556.1|1372755_1372860_+|hypothetical-protein
MFPVPRLTYEALGLVMPQPVLEFWYSPLPTGCSL
>CP031750.1|AXQ93555.1|1371921_1372659_+|precorrin-6A-synthase-(deacetylating)
MMDLILIGIGTGNPDHVTLEGRRAMAEADLILVPRKGEDKADLAGLRLAILAEAAPHVPVAEFDLPVRDAAHPDYRQAVEDWHDAIALAWAQAAGQAARVALLIWGDPSLYDSSLRIAARLQPAPRVRVVPGITAIQALCAAHAIPLNEVGAPVLITTGRRLREGGWPEGVDRLAVMLDGETSFRHLPPDGVRIWWGAFLGMTEQILEAGPLAEAGPRIVATRAAARARHGWIMDIYLLARGESG
>CP031750.1|AXQ93554.1|1371125_1371848_+|uroporphyrinogen-III-C-methyltransferase
MTGFVSFVSSGPGDPELLTLKAVDRLGRADAVLFDDLSSGPILAHAREGADLVGVGKRAGRASPKQDHVSRLLVDYARTGVRVVRLKSGDAGLFGRLEEEIGALEAAGIGYEIVPGVPSACAAAAAAGIPLTRRLTARRVQFLTGADVTGGLPEQNLAALADPTATTVVFMGKRTFPTLADALFAAGLPTETPAMLAEGISTPAQRIWRGTLEGLVQEVARAGDAPALILYGPLAGEEEG
>CP031750.1|AXQ93553.1|1370346_1371129_+|precorrin-4-C(11)-methyltransferase
MTVHFIGAGPGAPDLITLRGRDLIAASPVCLYAGSLVPEGVLAHCPPGCRIVNTAPLSLDAIIDEIAAAHAEGKDVARLHSGDLSVWSAMGEQLRRLRALGIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVVLTRTSGRASPMPEGESLAAFAATGAVLAIHLSVHVLDRVMADLLPHYGADCPVAVVWRASWPDERVVRATLGTLQAALGAELERTALILVGRSLGAEDFAESRLYAGDYDRRYRPVGTHPRFPEQA
>CP031750.1|AXQ95085.1|1369969_1370350_+|precorrin-methylase
MIVAGLGFRASATEEDLAAALTLLGEMPEVLATLDARAGLPALTALARGLGLPVVGLPEAALAGIATPTRSARIEQRFGTGSVAEAAALVAAGPGALLTRPRQIAGPVTIAVARAAAESDSKGATA
>CP031750.1|AXQ93552.1|1368809_1369973_+|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE
MADPWLSIIGLGEDGPAGLTDASRAALEAAEVVVGGPRHLALVEAGARGLEWPVPFDLAPVLALRGRPVAVLASGDPFWHGAGGSLAAALEAGEWCAYPAPGVVALAAARLGWRQEEVLSLGLHAAPVERLLPELAPGRRAICTLRDGPAAGALAAFLAAEGWGDSRLWVLESLGGPRERVREATACGFALTDVAAPVTVAIEARGGTALPRSPGRPDTLFAHDGQITKAPVRALTLAALAPRRGELLWDLGAGSGSVSVEWCLAGGRAVSVECRPERVANIRANAARFALPLEVVEGRTHDALASLPAPDAIFVGGGFDEALFAALPRTARLVVNAVTLETEALLAALHARHGGDLLRIEIARATPLGRMRGWDAARPVVQWSLRP
>CP031750.1|AXQ93551.1|1368067_1368811_-|cobalt-precorrin-6A-reductase
MRILLLGGTTEASRMARALAEAGLPSVFSYAGRTAAPVAQPLPVRVGGFGGVEGLAAYIRAEGITHVIDATHPFATQMSRNAVEACDATGTALVALERAPWVAGPGDRWIRVPSIEAAAEALPEAPARVFLAIGRLHLAAFAGRPQHHYLLRLVDPPEGLPLPHAEAIIARGPFTLAEDLDLLRSHATQWIVAKNAGGEGARAKLDAARELGLPVVLIDRPAILPRPRAETPEAVLAWLAHPADLGV
>CP031750.1|AXQ93550.1|1367357_1368092_+|precorrin-3B-C(17)-methyltransferase
MSGWLVVAGLGPGAEHLVTPEVSAALAEATDVVGYIPYVARVAERPGLTLHASDNRVEVERAAHALLMAAEGRRVVVVSSGDPGVFAMASALFEALEARPEWQALDIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPWALIEKRLRLAAEADLAMAFYNPRSKSRPEGFVRALEILRAACGPDRLVTFARAVSTPEQHLRTVTLAEATPEMADMRTVVILGNSATRRVGRWVYTPRSAG
>CP031750.1|AXQ93549.1|1366626_1367361_+|precorrin-2-C(20)-methyltransferase
MMGRIICAGLGPGDPELLSVKSDRLIRQARHVAYFRKAGRAGQARRIVEGMLRPDAVEYPMDYPVTTEIRFDHPDYNRMLAEFYGLWADRLAELAQTEEVVVLCEGDPLFYGSFMHLHSRLQGRSEVEIVPGIPGMAGCWNAAGLPITWGDDVLSVLAGTLPEEDLARHAAAADAVVVMKTGRNLPKVRRALAAAGRLEEAWLVERGTMPGQRVARLAEVEGADCPYFAIVLVPGRGRRPELAE
>CP031750.1|AXQ93548.1|1366000_1366630_+|precorrin-8X-methylmutase
MPHLYETDGAAIYRQSFATIRSEAALARFTPEEEVVVVRMIHAAGMVGLEAHVRFSPGMAVAARAALEAGAPILCDARMVSEGITRPRLPAGNRVVCTLQDAEVPELARAMGTTRSAAALELWRPHLAGAVVAIGNAPTALFHLLNMLEDPACPRPAAIIGCPVGFVGAAESKEALMEDLPCPSLIVEGRLGGSAITVAAVNALACRVE
>CP031750.1|AXQ93558.1|1374098_1374695_-|shikimate-kinase
MMSGAEVRRLRDGDGQEFMARLKKTVVMVGMMGAGKTAVGTALARALAVPFLDSDEEIERAANRTIAEIFARDGEPFFREKESQVLSRLLKGTPCVLSTGGGAFMSEANRRMIREQGVSVWLKADLEVLWQRVRHKATRPLLRTPNPRETLRALLEARDPVYAQADLVVESGEGTVEQMAVRVREALATRPDVLETDG
>CP031750.1|AXQ93559.1|1374829_1374964_+|hypothetical-protein
MWRILKVLLVLVVAGLIGLTGYAYLADLSPPQTDVTKPVMLNAQ
>CP031750.1|AXQ93560.1|1374953_1376525_+|hypothetical-protein
MPNDATAGPIRAGARRGAAAVCALIGLSAGAAAQEPLSAIDWLSRSVAAPVKVAPPSDEPGITKGALPAEVAVTPLDGPSPDAAGLLPPAVTGLPHALWGMGRTTDIANRIAIAPTGTLPALQSLLTTILLAEAQPPADSEGKGRLLLARVDKLLAIGALEAATSLIDAASDNGAEIFRRKFDIALLTGEEDTSCAELQKSPDLAPTFPARIFCLARSGDWNAAALTLRTAQALGYVDDAQDALLSRFLDPDLYEDEGPLTHPARVTPLDWRLLEAVGETLPTQSLPIAFAHAELRETAGWKAQIEAAERLSRSGALEPNLLLGLYTARKAAASGGVWDRVRAFQALDEALTAGDAAAAGPALLLAYERMSEVELEVTLARLLAGRLEGLALPPEADALAFRVGLLSPDAEAVARARKPRDAAEGFLVALAAGDPARAAAPMDLMGRAVAAGFGTAGPSETAKDYLDQDRPGEALLLALEEVTRGMDGDTTGVAQGLALLRTLGLEKVARRTALELMLLERRG
>CP031750.1|AXQ95086.1|1376539_1377460_+|site-specific-tyrosine-recombinase-XerD
MERWISAFLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATADRAAVEAYLVFCEAQGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKTLEIEEVDRLLDAARDKGRRAADQVRNRCLLELLYATGMRVSEMVGLPVAAARGNPQMILVRGKGGKERMVPLSPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTREYFYVLIKQIAVLAGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDEHLKDLVLRHHPLARE
>CP031750.1|AXQ93561.1|1377635_1378964_+|HlyC/CorC-family-transporter
MNLSNLDPATLLTAVAILGLLVLSAFFSGSETALTASSRAKLRAKADKGSRGAERAFEITGDNERMIGALLLGNNVVNILSASLATALLTRLFGDGGVAVATLVMTLLVLIFGEVLPKTLAISRPESFASVVAPIIRVLIVLFSPIVAVVRVLVRGLLRLVGVRIDPGDHMLAIRDEIAGAIALGHSQGAVEKEDRDRLLGALDLSERTVEEIMRHRSQIEMIDADKPAAEVIAQVLSSPHTRIPLYRGDHENILGIIHAKDLLREVSRLMRTGSTGALDELDILSVAMKPYFVPETTPLDEQMRQFLKRHTHFALVVDEYGALKGLITLEDIIEEIVGEINDEFDVALEMTLKRSDTGDYLVDGSMTIRDLNRMMDWQLPDEEANTVAGLVIHEAQMIPNEGQAFSFHGFRFEVLTKRDNRIMKLKVRPLDAQPISGRDRP
>CP031750.1|AXQ95087.1|1378933_1380070_-|helix-turn-helix-domain-containing-protein
MQTDLRLSPTLPAWLPEPVRLYLDHTEEGLSLRALARREGCHASTVMRHVRRCENRRDDPLVDEALAAFGRSLGRGAFPARKDRPDMTAPIRPEASPALRPALLDETTIAREARRILRRLAEPQTVLAVAPDMEKAAVLRSLPDGSTARTAVMDRAVAQAFALKDWITCRKPGRIATYEITATGRAALRRLVECDEAGRGGGLAEAAQPFAAQHRDWAEREIRDEDGPRRVRYNAAESPVAVLGRRRDKDGQPFLAAELVEAAERLREDFELAQMGPRVAQNWDRFLTGADRGSFRSDSGGAEGPRQARERVAAALRDLGPGLGDMVLRCCCFLEGLEAAERRMGWSARSGKIVLRIALQRLRRHYDETYGRSRPLIG
>CP031750.1|AXQ93562.1|1380294_1380570_+|hypothetical-protein
MTEIRSLLAEIRRPRLLMRAARLGLADYRRERDLRRLVEDQRPERAVTALLQEERRLEARRQAGDATYSVTHHVEVLIALIAEARLIQPLP
>CP031750.1|AXQ93563.1|1380729_1381071_-|DUF305-domain-containing-protein
MRSLILIALVAAGPAFAQMDHSAHGPSAGSGSSLAYEEANRAMHEAMSVPLTGDADVDFMRSMIPHHEGAVAMARVALEHGSDPEVRKLAEEVIQAQEAEIAFMKDWLTRHGH
>CP031750.1|AXQ95088.1|1381269_1382100_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MRPQIPDTQILGTAMPRPAGRRPVVGIIGNSSLLNESYPVHAGGTMNSEAVALVSGCLPLIIPTDPNFVTVEELLDLCDGFLLTGARPNVHPSEYGEDETPAHGLFERARDAITLPLVRACVERGQPFLGICRGFQEVNVAMGGTLHPEIRDLPGRMNHRMPPDGTIEEKFALRHPVRFTAGGVFHRLMGAKEVMTNTLHGQGIARPGRRIVIDGTAPDGTPEAIYVEGAPGFTLSVQWHPEWNAAADPVSRPLFSAFGDAVRAWADCRSPARLSA
>CP031750.1|AXQ93564.1|1382112_1383144_-|LacI-family-DNA-binding-transcriptional-regulator
MKVVGGPSAGRIAEIAGVSKSTVSRALSGHPSISEGTRKRILKIAHEIGYEPNAMASSLVTARSGVIGFVIGEMENPFYQEHIEKVARISAAAGTQLMLFQVPQDGELADVVPAMARYRLEGCIVIASVRTNAKSLTACRLHGIPVVLINRVVHDGSASSVLCHNEAGGHELGRFLLAGGHRRIAIISGRADSIVNRDRLTGFRAALAEAGVREVAEVNGDFRFEAAYQAARELLSAEPRCDAIFAVSDLMACGAIDAARDLAVRVPDDLSIVGFDGIRTAAWPAYRLTTVAQPADAILSRAVALIAARDPNRAPEISYINGLLKVRRSARVPAGYAPEPEYL

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Crispr_ID: CP031750_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031750_2

1495742-1495849

Orphan

Consensus_repeat	Method
CCGGCCGCAGCGGACGCCGCGCCGCCTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031750_2

>merge|CP031750|2|1495742-1495849|CRISPRCasFinder
CCGGCCGCAGCGGACGCCGCGCCGCCTTCGAGACATGAGCCCGAGCCGGCCGAAGAGCCCAAGATGCCTCGAGAGGCGCCGGCCGCAGCGGACGCCGCGGCGCCTTCG

>CP031750|2|2|1495742-1495849|CRISPRCasFinder
CCGGCCGCAGCGGACGCCGCGCCGCCTTCG	AGACATGAGCCCGAGCCGGCCGAAGAGCCCAAGATGCCTCGAGAGGCG
CCGGCCGCAGCGGACGCCGCGGCGCCTTCG

Protein	Signature genes	Signature genes Name	Protein_function
CP031750.1\|AXQ93669.1\|1498565_1498862_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|131533
CP031750.1\|AXQ93666.1\|1494705_1495119_+\|flagellar-biosynthesis-protein-FliJ	unknown	unknown	unknown
CP031750.1\|AXQ93660.1\|1488348_1489485_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
CP031750.1\|AXQ93672.1\|1499932_1500199_+\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|130469
CP031750.1\|AXQ93667.1\|1496969_1497548_+\|flagellar-basal-body-protein-FliL	unknown	unknown	gnl\|CDD\|377123
CP031750.1\|AXQ93662.1\|1489841_1491560_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
CP031750.1\|AXQ93671.1\|1499192_1499933_+\|flagellar-biosynthetic-protein-FliP	unknown	unknown	gnl\|CDD\|235566
CP031750.1\|AXQ93661.1\|1489498_1489822_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|376721
CP031750.1\|AXQ93675.1\|1502197_1502938_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
CP031750.1\|AXQ93673.1\|1500198_1500999_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|130467
CP031750.1\|AXQ93658.1\|1486231_1487431_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
CP031750.1\|AXQ93670.1\|1498938_1499196_+\|flagellar-assembly-protein-FliO	unknown	unknown	gnl\|CDD\|274610
CP031750.1\|AXQ93665.1\|1493375_1494704_+\|FliI/YscN-family-ATPase	unknown	unknown	gnl\|CDD\|274607
CP031750.1\|AXQ93659.1\|1487616_1487922_-\|hypothetical-protein	unknown	unknown	unknown
CP031750.1\|AXQ93668.1\|1497551_1498523_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|130464
CP031750.1\|AXQ95095.1\|1496467_1496959_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|350657
CP031750.1\|AXQ93657.1\|1485425_1486235_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
CP031750.1\|AXQ93674.1\|1500985_1502128_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|129428
CP031750.1\|AXQ93663.1\|1491561_1492581_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
CP031750.1\|AXQ93664.1\|1492584_1493379_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562

Protein	Function_ID	Function_description	E-value
CP031750.1\|AXQ93669.1\|1498565_1498862_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|131533	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility].	6.32718e-31
CP031750.1\|AXQ93662.1\|1489841_1491560_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	2.08705e-131
CP031750.1\|AXQ93660.1\|1488348_1489485_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	5.22762e-103
CP031750.1\|AXQ93672.1\|1499932_1500199_+\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|130469	TIGR01402, Flagellar_biosynthetic_protein_FliQ, flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems. [Cellular processes, Chemotaxis and motility].	4.16678e-28
CP031750.1\|AXQ93667.1\|1496969_1497548_+\|flagellar-basal-body-protein-FliL	gnl\|CDD\|377123	pfam03748, FliL, Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.	2.2862e-17
CP031750.1\|AXQ93665.1\|1493375_1494704_+\|FliI/YscN-family-ATPase	gnl\|CDD\|274607	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility].	0
CP031750.1\|AXQ93671.1\|1499192_1499933_+\|flagellar-biosynthetic-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.89441e-115
CP031750.1\|AXQ93661.1\|1489498_1489822_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|376721	pfam02049, FliE, Flagellar hook-basal body complex protein FliE.	1.75574e-21
CP031750.1\|AXQ93673.1\|1500198_1500999_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|130467	TIGR01400, Flagellar_biosynthetic_protein_FliR, flagellar biosynthetic protein FliR. This model recognizes the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT. [Cellular processes, Chemotaxis and motility].	1.59087e-61
CP031750.1\|AXQ93658.1\|1486231_1487431_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	4.30941e-124
CP031750.1\|AXQ93670.1\|1498938_1499196_+\|flagellar-assembly-protein-FliO	gnl\|CDD\|274610	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.	0.000235028
CP031750.1\|AXQ93675.1\|1502197_1502938_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000107371
CP031750.1\|AXQ93663.1\|1491561_1492581_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	5.41094e-123
CP031750.1\|AXQ95095.1\|1496467_1496959_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|350657	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains. The flagellar hook-length control protein FliK is a soluble cytoplasmic protein that is secreted during flagellar formation. It controls hook elongation by two successive events: by determining hook length and by stopping the supply of hook protein. It contains an N-terminal domain that determines hook length and a C-terminal domain that is responsible for switching secretion from the hook protein to that of the filament protein, by interacting with FlhB, the switchable secretion gate.	5.79413e-20
CP031750.1\|AXQ93657.1\|1485425_1486235_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	6.47101e-65
CP031750.1\|AXQ93674.1\|1500985_1502128_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|129428	TIGR00328, Flagellar_biosynthetic_protein_FlhB, flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility].	1.02452e-141
CP031750.1\|AXQ93668.1\|1497551_1498523_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|130464	TIGR01397, Flagellar_motor_switch_protein_FliM, flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself. [Cellular processes, Chemotaxis and motility].	1.09272e-120
CP031750.1\|AXQ93664.1\|1492584_1493379_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	1.26922e-11

>CP031750.1|AXQ93666.1|1494705_1495119_+|flagellar-biosynthesis-protein-FliJ
MTTKSHLLSLMSRRETVRLMQVQGALREARDRHAEAEAISERLSQMLESRRATAQGPVAAADLFRAHRLTLQIAEQAERSAQRAAELSAALGVAQAEMARQDHRTRLLQESAATALAAETEERIARAEAARPALRRG
>CP031750.1|AXQ93665.1|1493375_1494704_+|FliI/YscN-family-ATPase
MNALIDSLAHHLAHLPQRQAPEVTGRVSRYDGLLLECAGFPASPGALCRVATEDGSEVQGEVIGFAKGSNLLFLDHTRAPVIAGARVRLVPGGQMAAVGPELLGRVIDAEGAPLDGLPPPDCSAEWPLAGRTMNPLARTPVSRPLDVGVRAINAALTVGQGQRIGIVAGSGVGKSVLIEMMTRYTAADVIVVGLIGERAREVGAFAASVMQGEAARKLCMVAVPADRSPLLRLRAARRATAIAEHFRAQGKQVLLIMDSLTRVAHAQREVGLALGEQPTAKGYPPSVVSMIPGLIERTGPGLPGEGAITAIYTVLADGDDTTNDPVVDTARAILDGHFVLSRRQTQMGLYPAIDIPHSVSRTMNDVVDERHRKAAARLRQLISLYTDNRDLMLMGGYAPGQDADLDQAVQLWPKIRALIGQGPHEPSDFEASRTALLDLTGM
>CP031750.1|AXQ93664.1|1492584_1493379_+|flagellar-assembly-protein-FliH
MNARTPMGPEDVLALIRESNARGFGRSAVPVRAPAEPFRPTPLAGLVRDVAPEGAALPVLEPEPPAPPAPALPDPVPPDPALLEAARAEGRREGHAEGLAEGRAAGRAEAEAALGAARDTFLQLAARLSAPTPADTARLAQLIEGAVRALASQRAGLAIDAHPEAFAARIETLADRVAHGLREVTLRLNAEDLRAVAPHLEAGGICPPARITADPRLARGDLEVRAEGIVLADLIGVAPLAAAPGRDPETAPADAIGASAAAAS
>CP031750.1|AXQ93663.1|1491561_1492581_+|flagellar-motor-switch-protein-FliG
MSKAADHFKTLSGTQKAAILLMLFGETTAAQIMRNLSPREVQHLGAAMYTVRGVDQDTLSLVLDDFLETLRLQTGLGFGAAGYIRNVLSAAFGEDKAETVISRIGQSASERPLEILDWMDAPSIAELLVDEHPQIMALTVACLDHALAAQVLALLPEEIQPEVVQRIASLNTVQPEALADLQQVMQRKFKASTTMRASQIGGVKAAAKIMNFTRTATEARILKDIRKDDKDLMQAIQDNMFVFDNLIKSDERSLQTLMRSVDNETLVLALKGADEMLRAKILGCMSTRAAANVRDEMEAMGPVRLTDVQAAQKQIIAVARQLSDEGTIVLAGRGGEQMV
>CP031750.1|AXQ93662.1|1489841_1491560_+|flagellar-M-ring-protein-FliF
MALSPTPPAVRGADSPLALQMRGMVSQLRQFGDQPGLRRAMPAIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKARVIDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQGLPDGNAMLSDLPMGTSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVAPGRALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQMETLYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPDRTAILSEQSQVEESADPQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTRNFEISRKVETTLPATARIARVSAAVVIRAQPQPAPADPEAPPPPLLPEALQADLDRLTRSAIGFDETRGDVVTITAQPFLDTIMPEPPGWTSQPWVADLARQAFLLAALAVVALGVVRPILNRVLLPAPAAAGALPLSPGEAAVEVGEGETLDDVRARLKARQGALTKNMLDAARSHEEQILVIRKLVEEDSGRIATTFRQMIASELDTVN
>CP031750.1|AXQ93661.1|1489498_1489822_+|flagellar-hook-basal-body-complex-protein-FliE
MSINGISGASPLVALQGPSASQRPEPVSSTDRAQAPAFSERLGSALEGLAKSQTEAAEKASAFERGEGGNLAEVMVSQQVSSLGFQLALNVRNKALGAYRDIMNMPV
>CP031750.1|AXQ93660.1|1488348_1489485_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MAAIQIIGTDFAAAHALEGLLARRRVRLQAGTGGPVAVLACSARHEAASGGAPGITALARAAGARAVVIVEEGADALAISGEMGGRLLRVALPRASGQPAHRDAALLMLADVLASQVSAMVAADAATGALIDLAARVARTDVTVFINGPTGSGKEVLARKVHEASRRAAAPFIAINCAAIPENMLEAILFGHEKGAFTGASGANKGIIRAAESGTLLLDEVSEMPMGLQSKLLRVLQERRVTPLGSQTEVPVDVRIIATSNRNMPEEVRARRFREDLWYRLNVFPLTTKPLCEREDDIPALAVSLLRRHCPADVALPLVTPEAMEVLLAHDWPGNVRELENVIQRALVLHEDSRITAADIVIDAVPQLPVRALHLAAV
>CP031750.1|AXQ93659.1|1487616_1487922_-|hypothetical-protein
MLSKTYHLKFPSLDAAQIAVPFVIEALGNAIPTCNLSGLNVLISKEGDVSINVFFPAIGELKNFEKKHGGFLDTMKKTFLFKSTGFDGVCIFNFDRNEEAA
>CP031750.1|AXQ93658.1|1486231_1487431_-|chemotaxis-protein-CheA
MSAMTETGADGGLMRVSSDKISRLMDLVGELSLSVAETVHSPDLAGLELTSFDAAVHRLTMIVREVQDAATELRLVPVEEVFKRLRRMVRELERQTGKKIEMVLEGEETAIDKLVADQLYDPLLHVVRNSADHGLESPAERLAAGKPETGRITLSAAQVGSEVRITVADDGRGLSRDKILKRARERGLFGPDEEPEPSVLWKVIFQPGFSTAEAVTNLSGRGVGMDVLNTTMTALRGRIGVESAAGAGSEVSLHIPVSLAFLDCIILRLGQRLYALPIDVVSEIVQPAPADVMGVGAAGGSEMLRLRGRWIPVCRLEKFYDEPTAGLPPLSSQVLAVVGTASGAIAVPVDEVLDRQQVVMKPLTGRLARVRASWGCALLGTGEVALVLDGNRLAGGGGA
>CP031750.1|AXQ93657.1|1485425_1486235_-|protein-glutamate-O-methyltransferase-CheR
MTIREEAGYEAIRIWLSRRCGIAYPEHKGEMLRQRLSRVRRAYDLGSLADLAIRLNAAGSHDLELAVMHAASTNHTYFCREPDVLDAFRAMVLPVLARRDEIRIWSAACSSGDEVYTIAMMIAETLGPEGLARTQILGTDISAPMVEQAEQGIYRRRHLEQVPDAVLRRWFVPLGNDTFRVAPELAAACVFRRMNLKTRPFPFRKPFQAIFCRNVLYYFDRADQAETLRALHDATEPGGWLVTSVTESLRDHDSGWRSIGGGLHQKEAR
>CP031750.1|AXQ95095.1|1496467_1496959_+|flagellar-hook-length-control-protein-FliK
MAERPPAGVDTAALPPSGTDRADETQPSGPAEGLALGDPDWPIEVQEHVLEAAEAGTSEIEIVLAPETLGRLRIRVEMREGAAQVSFVTETAEAARLLAGQEGRLSDLLEKQGLSLARHEAGQGDTGARRDSPEQGPARRTFRPSPVLPEPAAPAAGLVNLIA
>CP031750.1|AXQ93667.1|1496969_1497548_+|flagellar-basal-body-protein-FliL
MTDATATLDPKPRRGRGLLRMLGLLLLSVVLLALGFGAGFFYFANPLSPAKDVMRLIERTPADEETPAAIDPKAPQKVPRPTPNKEAFVTSYYQFKEPLTTNLRASRRFLQVGIGLSTQYDQKVMDNVARNEVALRSDMLAIIGTFSEEELQDKAGRDRLAEALRGAVNARLQQLEGFGGIEAVFFPSFILQ
>CP031750.1|AXQ93668.1|1497551_1498523_+|flagellar-motor-switch-protein-FliM
MAATPRKLSSKEVAALVGNLMEASESLSMENGQEVRPFAFGDNDLNLLGDYHALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVIPPPFISLLTDSYYGGQIRHIPTTRTEFTATEQRVIELVTDRLNVALQVAWRDLMALSFTVVSREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQLRSRMQSDFVDDDRTWREKLERAILSIPLTLSARLCEPEVPLRQLMQIQPGDVLPVQLTEAVSLLVENEPIFEGVPGERGGQAALNLTRRRART
>CP031750.1|AXQ93669.1|1498565_1498862_+|flagellar-motor-switch-protein-FliN
MTDTARPLTERLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMVGERFGIRFGQIIEPEKRAESL
>CP031750.1|AXQ93670.1|1498938_1499196_+|flagellar-assembly-protein-FliO
MDILRPDQILTLGLFLGLLGLLWLVVKLKAPGISRFASGGRLRVAEAAALGPQERAVLLAVDGREFLILTSRGAAPTVLPLEARP
>CP031750.1|AXQ93671.1|1499192_1499933_+|flagellar-biosynthetic-protein-FliP
MTALRVTALVAALLLSGPAFAQGLPALTITESTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPTLGTLYAEALSPFLDGRLAAEPAIERGGAIMKEFLIANTRQNDLLMFSDLAGAGPYEDPRDVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATYGGQ
>CP031750.1|AXQ93672.1|1499932_1500199_+|flagellar-biosynthetic-protein-FliQ
MDFDGSIEHLRIAYWNILLTAGPVLGVALAVGLVIGILQAATSINEATLSFVPKLAIVLLTMALASSFMLTRMTDYFAFVFETIATIR
>CP031750.1|AXQ93673.1|1500198_1500999_+|flagellar-biosynthetic-protein-FliR
MESLPALDLPGLLGSLTSLFFATLRIGAFLLASPAFGGRFVPLPVRIMATVVLTLPVLGRADLPGPEALASLSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAGGQTPVVAQIFGLALTTVFLALDGHLLAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQIMMPVVAALVLINITIGVITRSAPQLNVFSFGFPVTMSATLILLFLTVPGTMGAFSSLVADSLAALAQLLEVTDGRG
>CP031750.1|AXQ93674.1|1500985_1502128_+|flagellar-biosynthesis-protein-FlhB
MAEGDDGQEKTEEPTQKRRDQAREDGSIVTSKEVFVFATLAGGLALLVMLQGMLPALVRGWSGYLVLEPGADLDRVMMLRLGQVWREVLLAGLIVSVPLLVVVLLVQYGMGGINFSTKAMAFKASRINPGAGLKRMVSMKALVELGKAIAKVSLLIGVAVLVLRDELAPLDRLWTSAPADAAAVMGVGLIRLVSALLIVLALIGGLDLVWQAWSLTNSMKMSRQELKEESKEANGSPEVKGRMRRMQMEASQNGAKRRAALENVPQATAIVTNPTHFAVALRYVPGETTAPVILALGKGPMALDIIERGRKAGVGTLRIPVLARALYFTGDIGQEISDQLYGAVAAVLAHVYRLDRGEAGDLPEVEVPDALAFDEFGRPM
>CP031750.1|AXQ93675.1|1502197_1502938_+|hypothetical-protein
MTEETDPLSDGIARALGAANAANDAAQDLEQLQIEHRAFMDRMIRSQKRMQALSLGALTGAGVAILLGGLVYFRSVADLRETSEIQAQAGELMVTRLSDLGAAIEKVEGLADRIETQEATLKTAIEAVGERLAGDLETFSGQAAAIEPQFATAIQSHVDQGLAATREALILALGEVDNSLRKAIESGAGTSPELRALIEEMRANRPAPRAAAPAPKPAATSRPAKAAPPAAPRPAAKPADNPIRYP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

704713 : 714512

Vibrio_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ92962.1\|704713_706717_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.5e-34	35.3
AXQ92963.1\|706728_707109_+	hypothetical protein	NA	NA	NA	NA
AXQ92964.1\|707379_707847_+	transcriptional regulator NrdR	NA	NA	NA	NA
AXQ95044.1\|707861_708932_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.4e-34	31.7
AXQ92965.1\|708968_709397_-	lactoylglutathione lyase	NA	NA	NA	NA
AXQ92966.1\|709603_710500_+	thymidylate synthase	A6M9A2	Geobacillus_virus	6.8e-75	49.1
AXQ92967.1\|710499_710979_+	dihydrofolate reductase	A0A0K2QQK4	Ralstonia_phage	1.5e-23	41.2
AXQ92968.1\|711016_711421_+	DUF2177 family protein	NA	NA	NA	NA
AXQ92969.1\|711486_711813_+	hypothetical protein	NA	NA	NA	NA
AXQ92970.1\|711868_712075_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.5e-11	50.0
AXQ92971.1\|712571_714512_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	6.0e-116	37.0

DBSCAN-SWA_2

752617 : 811321

uncultured_Mediterranean_phage(20.0%)

transposase,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ92999.1\|752617_752851_-\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	3.5e-07	46.0
AXQ93000.1\|752847_753327_-	hypothetical protein	NA	NA	NA	NA
AXQ93001.1\|753304_753706_-	hypothetical protein	NA	NA	NA	NA
AXQ95050.1\|753702_754212_-	hypothetical protein	NA	NA	NA	NA
AXQ93002.1\|754216_755605_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	3.7e-51	41.7
AXQ93003.1\|755597_755783_-	hypothetical protein	NA	NA	NA	NA
AXQ93004.1\|756081_756666_-	hypothetical protein	NA	NA	NA	NA
AXQ93005.1\|756662_757130_-	hypothetical protein	NA	NA	NA	NA
AXQ93006.1\|757242_757827_-	hypothetical protein	NA	NA	NA	NA
AXQ93007.1\|757819_758173_-	hypothetical protein	NA	NA	NA	NA
AXQ93008.1\|758380_758845_-	hypothetical protein	NA	NA	NA	NA
AXQ93009.1\|758837_759050_-	hypothetical protein	NA	NA	NA	NA
AXQ93010.1\|760146_760455_-	hypothetical protein	NA	NA	NA	NA
AXQ93011.1\|760605_761928_-	DUF4102 domain-containing protein	M4QPJ3	Sulfitobacter_phage	7.6e-38	32.1
AXQ95051.1\|762009_762063_-	hypothetical protein	NA	NA	NA	NA
AXQ93012.1\|762508_764527_-	transketolase	NA	NA	NA	NA
AXQ93013.1\|764782_765250_+	hypothetical protein	NA	NA	NA	NA
AXQ93014.1\|765242_765617_+	cell division protein ZapA	NA	NA	NA	NA
AXQ93015.1\|765802_766168_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
AXQ93016.1\|766227_766470_-	BolA family transcriptional regulator	NA	NA	NA	NA
AXQ93017.1\|766585_768745_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.6e-139	40.8
AXQ93018.1\|769183_770077_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXQ93019.1\|770233_773620_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA
AXQ93020.1\|773774_774587_+	glutamate racemase	NA	NA	NA	NA
AXQ93021.1\|774611_775640_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
AXQ93022.1\|775664_776120_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
AXQ93023.1\|776293_776905_+	peptidoglycan-binding protein	G8DH66	Emiliania_huxleyi_virus	2.1e-59	57.1
AXQ93024.1\|776895_777390_+	methionine synthase I	NA	NA	NA	NA
AXQ93025.1\|777464_779207_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
AXQ93026.1\|779277_780234_+	SPOR domain-containing protein	NA	NA	NA	NA
AXQ93027.1\|780230_781247_+	glycoside hydrolase family 3 protein	A0A1B1IVS3	uncultured_Mediterranean_phage	8.4e-21	44.6
AXQ95052.1\|781239_782025_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	7.4e-33	33.2
AXQ93028.1\|782024_782660_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-39	44.8
AXQ93029.1\|782994_783435_+	hypothetical protein	NA	NA	NA	NA
AXQ93030.1\|783439_784129_-	DUF1045 domain-containing protein	NA	NA	NA	NA
AXQ93031.1\|784196_784661_-	disulfide bond formation protein B	NA	NA	NA	NA
AXQ93032.1\|784787_785627_+	hypothetical protein	A0A1I9SA48	Rhodococcus_phage	1.1e-34	31.2
AXQ93033.1\|786455_787079_+	type I secretion protein	NA	NA	NA	NA
AXQ95053.1\|787173_787722_-	nucleotidyltransferase family protein	NA	NA	NA	NA
AXQ93034.1\|787777_789073_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AXQ93035.1\|789069_790080_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AXQ95054.1\|790083_790794_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.5e-13	24.2
AXQ93036.1\|790886_791669_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	8.5e-13	25.2
AXQ93037.1\|791797_792982_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXQ93038.1\|793228_794479_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	2.0e-64	36.7
AXQ93039.1\|794554_795670_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
AXQ93040.1\|795958_796114_+	putative RiPP precursor	NA	NA	NA	NA
AXQ93041.1\|796231_797509_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.6e-149	62.4
AXQ93042.1\|797545_798430_-	DMT family transporter	NA	NA	NA	NA
AXQ93043.1\|798521_798935_-	transcriptional repressor	NA	NA	NA	NA
AXQ93044.1\|799519_803170_+	vitamin B12-dependent ribonucleotide reductase	A0A1X9SGV9	Bradyrhizobium_phage	0.0e+00	56.6
AXQ93045.1\|803532_804033_+	cell wall hydrolase	A0A172Q0A7	Acinetobacter_phage	8.4e-06	30.9
AXQ93046.1\|804371_804776_+\|transposase	transposase	NA	NA	NA	NA
AXQ93047.1\|804772_805126_+\|transposase	transposase	NA	NA	NA	NA
AXQ93048.1\|806155_807208_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXQ93049.1\|809588_810359_-\|transposase	transposase	NA	NA	NA	NA
AXQ93050.1\|810340_811321_-\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

940360 : 971705

Rhodobacter_phage(47.62%)

terminase,capsid,head,tail,integrase,portal

attL 933239:933255|attR 943640:943656

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
933239:933255	attL	NA	NA	NA	NA
AXQ93162.1\|940360_941368_-\|integrase	site-specific integrase	A0A068CCA6	Rhizobium_phage	4.2e-12	25.4
AXQ93163.1\|941244_941565_-	DNA-binding protein	NA	NA	NA	NA
AXQ93164.1\|941533_941812_-	restriction alleviation protein, Lar family	NA	NA	NA	NA
AXQ93165.1\|941804_942374_-	hypothetical protein	NA	NA	NA	NA
AXQ93166.1\|942459_942729_-	DUF4031 domain-containing protein	A0A0A8IK97	Aurantimonas_phage	6.0e-19	56.2
AXQ93167.1\|942725_942971_-	hypothetical protein	NA	NA	NA	NA
AXQ93168.1\|942970_945019_-	DNA methyltransferase	A0A1X9HVK8	Ruegeria_phage	2.9e-230	64.6
943640:943656	attR	NA	NA	NA	NA
AXQ93169.1\|945126_945480_-	DUF4326 domain-containing protein	A0A142KAL3	Gordonia_phage	6.1e-19	43.8
AXQ93170.1\|945472_945991_-	hypothetical protein	NA	NA	NA	NA
AXQ93171.1\|945987_946398_-	hypothetical protein	A0A291AUQ6	Sinorhizobium_phage	3.4e-37	51.1
AXQ93172.1\|946390_946594_-	hypothetical protein	NA	NA	NA	NA
AXQ93173.1\|946586_947279_-	hypothetical protein	NA	NA	NA	NA
AXQ93174.1\|947265_947463_-	hypothetical protein	NA	NA	NA	NA
AXQ93175.1\|947467_947725_-	hypothetical protein	NA	NA	NA	NA
AXQ95059.1\|948261_948537_-	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	1.3e-24	68.9
AXQ93176.1\|948654_948978_-	hypothetical protein	NA	NA	NA	NA
AXQ93177.1\|948974_949214_-	hypothetical protein	NA	NA	NA	NA
AXQ93178.1\|949210_949408_-	hypothetical protein	NA	NA	NA	NA
AXQ93179.1\|949605_950235_-	hypothetical protein	NA	NA	NA	NA
AXQ93180.1\|950345_950858_-	hypothetical protein	NA	NA	NA	NA
AXQ93181.1\|951032_951410_-	hypothetical protein	NA	NA	NA	NA
AXQ93182.1\|951494_951725_+	hypothetical protein	NA	NA	NA	NA
AXQ93183.1\|951724_952066_+	hypothetical protein	A0A1X9HW32	Ruegeria_phage	8.8e-07	44.9
AXQ93184.1\|952062_952338_+	hypothetical protein	NA	NA	NA	NA
AXQ93185.1\|952868_953090_-	hypothetical protein	NA	NA	NA	NA
AXQ93186.1\|953444_953963_+	DUF1937 family protein	I3UM60	Rhodobacter_phage	6.6e-22	45.3
AXQ93187.1\|953959_954427_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXQ93188.1\|954423_954717_+	chromosomal replication initiator DnaA	NA	NA	NA	NA
AXQ93189.1\|954706_955351_+	DUF1376 domain-containing protein	NA	NA	NA	NA
AXQ93190.1\|955570_956158_+	hypothetical protein	NA	NA	NA	NA
AXQ93191.1\|956154_956679_+	hypothetical protein	NA	NA	NA	NA
AXQ93192.1\|956824_957184_+	HNH endonuclease	I3ULZ4	Rhodobacter_phage	2.9e-32	78.3
AXQ93193.1\|957180_957360_+	hypothetical protein	NA	NA	NA	NA
AXQ93194.1\|957460_957955_+	hypothetical protein	NA	NA	NA	NA
AXQ93195.1\|957954_959667_+\|terminase	terminase large subunit	I3ULZ6	Rhodobacter_phage	3.9e-127	45.5
AXQ93196.1\|959669_960932_+\|portal	phage portal protein	I3ULZ7	Rhodobacter_phage	1.8e-158	65.5
AXQ93197.1\|960946_961891_+	S49 family peptidase	I3ULZ8	Rhodobacter_phage	1.2e-101	65.4
AXQ93198.1\|961893_963198_+\|capsid	phage major capsid protein	I3ULZ9	Rhodobacter_phage	3.5e-181	76.7
AXQ93199.1\|963267_963729_+	hypothetical protein	I3UM00	Rhodobacter_phage	5.3e-31	53.3
AXQ93200.1\|963725_963914_+	hypothetical protein	NA	NA	NA	NA
AXQ93201.1\|963910_964393_+	hypothetical protein	NA	NA	NA	NA
AXQ93202.1\|964392_964749_+\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	7.5e-17	38.3
AXQ95060.1\|964754_965162_+	DUF3168 domain-containing protein	A0A141GEW7	Brucella_phage	5.7e-21	44.8
AXQ93203.1\|965303_965747_+	HK97 gp10 family phage protein	B4UTQ0	Rhizobium_phage	6.1e-16	37.9
AXQ93204.1\|965815_966262_+	hypothetical protein	NA	NA	NA	NA
AXQ93205.1\|966258_966675_+	gene transfer agent family protein	NA	NA	NA	NA
AXQ93206.1\|966798_967287_-	hypothetical protein	NA	NA	NA	NA
AXQ93207.1\|967298_970055_+\|tail	phage tail tape measure protein	A0A2H4GY14	Pseudomonas_phage	3.2e-46	41.6
AXQ93208.1\|970054_970705_+	hypothetical protein	I3UM12	Rhodobacter_phage	2.5e-50	49.8
AXQ93209.1\|970701_971289_+	hypothetical protein	I3UM13	Rhodobacter_phage	5.9e-43	46.8
AXQ95061.1\|971297_971705_+	hypothetical protein	I3UM14	Rhodobacter_phage	9.1e-35	51.1

DBSCAN-SWA_4

992654 : 1004737

Paracoccus_phage(50.0%)

capsid,head,protease,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ93227.1\|992654_993821_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	6.9e-59	35.9
AXQ93228.1\|993822_994056_+	hypothetical protein	NA	NA	NA	NA
AXQ93229.1\|994060_994624_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.2e-30	49.0
AXQ93230.1\|994656_995853_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	2.8e-63	40.1
AXQ93231.1\|995942_996542_+	hypothetical protein	NA	NA	NA	NA
AXQ93232.1\|996541_996877_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AXQ93233.1\|996873_997272_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AXQ93234.1\|997305_997719_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
AXQ93235.1\|997718_998036_+	gene transfer agent family protein	NA	NA	NA	NA
AXQ93236.1\|998037_998238_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
AXQ93237.1\|998230_998881_+\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.1e-08	27.2
AXQ93238.1\|998890_999523_+	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	1.0e-61	53.1
AXQ93239.1\|999522_1000407_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	1.6e-63	44.8
AXQ93240.1\|1000403_1000844_+	peptidase	F4YXU4	Roseobacter_phage	6.2e-29	47.5
AXQ93241.1\|1000843_1004737_+	host specificity protein	A0A0B5A7K5	Paracoccus_phage	2.5e-222	39.8

DBSCAN-SWA_5

1852537 : 1901863

Acidithiobacillus_phage(31.58%)

tRNA,transposase,terminase,capsid,head,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ93974.1\|1852537_1853998_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.2e-36	32.6
AXQ93975.1\|1854072_1855752_+	citramalate synthase	NA	NA	NA	NA
AXQ93976.1\|1855748_1856468_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXQ93977.1\|1856464_1857232_+	phytoene synthase	NA	NA	NA	NA
AXQ93978.1\|1857236_1858457_-	MFS transporter	NA	NA	NA	NA
AXQ93979.1\|1858569_1859199_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
AXQ93980.1\|1859195_1859858_+	phospholipase	NA	NA	NA	NA
AXQ93981.1\|1860059_1860644_+	HNH endonuclease	A0A1P8DIY8	Virus_Rctr197k	2.3e-23	39.6
AXQ93982.1\|1863494_1864358_-	hypothetical protein	A0A059NT77	Lactococcus_phage	7.4e-26	33.7
AXQ93983.1\|1866230_1867877_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
AXQ93984.1\|1869054_1869519_-	hypothetical protein	NA	NA	NA	NA
AXQ93985.1\|1869575_1869794_-	hypothetical protein	K4I1E3	Acidithiobacillus_phage	6.4e-19	71.4
AXQ93986.1\|1869803_1870880_-	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	2.6e-36	47.6
AXQ93987.1\|1870881_1872258_-	DNA methylase	A0A2H4JGF1	uncultured_Caudovirales_phage	8.1e-75	38.4
AXQ93988.1\|1872390_1873470_+	nitronate monooxygenase	NA	NA	NA	NA
AXQ93989.1\|1873914_1874295_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXQ93990.1\|1874483_1875065_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	4.0e-52	64.9
AXQ93991.1\|1875444_1877784_-	hypothetical protein	A0A1B2LRS1	Wolbachia_phage	2.0e-73	50.8
AXQ93992.1\|1878502_1878709_-	hypothetical protein	NA	NA	NA	NA
AXQ93993.1\|1878961_1880650_-	helicase	A0A125RNY6	Streptomyces_phage	7.4e-46	36.7
AXQ93994.1\|1880664_1881288_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.8e-53	54.4
AXQ93995.1\|1881389_1882265_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	6.9e-96	63.1
AXQ93996.1\|1882599_1882794_-	hypothetical protein	NA	NA	NA	NA
AXQ93997.1\|1882878_1883601_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AXQ93998.1\|1884024_1886274_-	hypothetical protein	NA	NA	NA	NA
AXQ93999.1\|1886464_1886668_+	hypothetical protein	NA	NA	NA	NA
AXQ94000.1\|1886664_1887120_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	3.3e-17	37.2
AXQ94001.1\|1887119_1888445_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	3.0e-119	51.2
AXQ94002.1\|1888441_1888825_+	hypothetical protein	NA	NA	NA	NA
AXQ94003.1\|1888828_1889665_-	DUF3883 domain-containing protein	NA	NA	NA	NA
AXQ94004.1\|1890131_1891505_+	DUF4102 domain-containing protein	A0A077KET4	Ralstonia_phage	3.7e-72	40.8
AXQ94005.1\|1892317_1892509_+	AlpA family transcriptional regulator	NA	NA	NA	NA
AXQ94006.1\|1892655_1893528_+	virulence-associated protein E	NA	NA	NA	NA
AXQ95118.1\|1893542_1894859_+	hypothetical protein	A0A1B1INT2	uncultured_Mediterranean_phage	2.5e-57	35.6
AXQ94007.1\|1894987_1895224_+	DNA-binding protein	NA	NA	NA	NA
AXQ94008.1\|1895223_1895508_+	hypothetical protein	NA	NA	NA	NA
AXQ94009.1\|1895682_1896861_+\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	2.2e-20	26.0
AXQ94010.1\|1896850_1897246_+	hypothetical protein	NA	NA	NA	NA
AXQ94011.1\|1897245_1898787_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	1.5e-40	33.2
AXQ94012.1\|1898799_1899177_+	hypothetical protein	NA	NA	NA	NA
AXQ94013.1\|1899179_1899539_+	HNH endonuclease	Q38456	Bacillus_phage	2.4e-18	46.2
AXQ94014.1\|1899535_1900009_+	hypothetical protein	A0A2H4JDL7	uncultured_Caudovirales_phage	3.7e-11	32.3
AXQ94015.1\|1900016_1900328_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
AXQ95119.1\|1900327_1900741_+	HK97 gp10 family phage protein	NA	NA	NA	NA
AXQ94016.1\|1900737_1901151_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AXQ94017.1\|1901150_1901474_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AXQ94018.1\|1901473_1901863_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA

DBSCAN-SWA_6

2426899 : 2496600

Paracoccus_phage(17.24%)

tRNA,transposase,terminase,capsid,head,tail,integrase,portal

attL 2415723:2415741|attR 2475009:2475027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2415723:2415741	attL	NA	NA	NA	NA
AXQ94499.1\|2426899_2428315_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
AXQ94500.1\|2428422_2429709_+	citrate (Si)-synthase	NA	NA	NA	NA
AXQ94501.1\|2429766_2430870_-	DUF2235 domain-containing protein	NA	NA	NA	NA
AXQ94502.1\|2431026_2432172_-	type III PLP-dependent enzyme	NA	NA	NA	NA
AXQ94503.1\|2432389_2432821_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AXQ94504.1\|2432894_2435858_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.2e-133	34.9
AXQ94505.1\|2435995_2436592_-	lytic transglycosylase	NA	NA	NA	NA
AXQ94506.1\|2436759_2438271_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	NA	NA	NA	NA
AXQ94507.1\|2438409_2438838_+	DUF4177 domain-containing protein	NA	NA	NA	NA
AXQ94508.1\|2438851_2439955_-	pyridoxal phosphate-dependent aminotransferase	A0A142C026	Faustovirus	2.6e-15	27.1
AXQ94509.1\|2440011_2440923_-	glycerol acyltransferase	NA	NA	NA	NA
AXQ94510.1\|2441026_2443582_-	aminopeptidase N	NA	NA	NA	NA
AXQ94511.1\|2445273_2447433_+	malate synthase G	NA	NA	NA	NA
AXQ94512.1\|2447558_2447816_-	BolA family transcriptional regulator	NA	NA	NA	NA
AXQ94513.1\|2447889_2448525_+	molecular chaperone DnaJ	NA	NA	NA	NA
AXQ94514.1\|2448655_2449693_+	cobaltochelatase subunit CobS	L7TKP0	Rhizobium_phage	3.6e-35	32.2
AXQ94515.1\|2449689_2450019_+	hypothetical protein	NA	NA	NA	NA
AXQ94516.1\|2450020_2450350_+	hypothetical protein	NA	NA	NA	NA
AXQ94517.1\|2450391_2452251_+	cobaltochelatase subunit CobT	J9Q7G6	Salmonella_phage	3.7e-14	27.7
AXQ94518.1\|2452250_2454047_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	2.0e-78	33.3
AXQ94519.1\|2454113_2454455_+	DUF427 domain-containing protein	NA	NA	NA	NA
AXQ94520.1\|2454477_2454906_-	SufE family protein	NA	NA	NA	NA
AXQ94521.1\|2455035_2455488_+	hypothetical protein	NA	NA	NA	NA
AXQ94522.1\|2455524_2456682_-	ribonuclease D	NA	NA	NA	NA
AXQ94523.1\|2456776_2457367_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.6e-24	35.8
AXQ95142.1\|2459064_2460216_-	DUF4041 domain-containing protein	A0A220NQR9	Corynebacterium_phage	4.4e-58	41.7
AXQ94524.1\|2460377_2460791_-	hypothetical protein	NA	NA	NA	NA
AXQ94525.1\|2460835_2461606_-	hypothetical protein	NA	NA	NA	NA
AXQ95143.1\|2461942_2462824_-\|integrase	site-specific integrase	G8DH71	Emiliania_huxleyi_virus	5.3e-72	47.4
AXQ94526.1\|2463036_2463219_-	hypothetical protein	NA	NA	NA	NA
AXQ94527.1\|2463260_2463983_-	hypothetical protein	A0A0U2BXK1	Paracoccus_phage	3.6e-82	65.4
AXQ94528.1\|2463975_2464155_-	hypothetical protein	NA	NA	NA	NA
AXQ94529.1\|2464253_2464649_-	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	7.0e-24	53.8
AXQ94530.1\|2464648_2464981_-	hypothetical protein	NA	NA	NA	NA
AXQ94531.1\|2464977_2465175_-	hypothetical protein	NA	NA	NA	NA
AXQ95144.1\|2465532_2466219_-	helix-turn-helix domain-containing protein	H6WBQ3	Rhodobacter_phage	1.4e-14	40.7
AXQ94532.1\|2466286_2466526_+	hypothetical protein	NA	NA	NA	NA
AXQ94533.1\|2466525_2466864_+	hypothetical protein	NA	NA	NA	NA
AXQ94534.1\|2466860_2467142_+	hypothetical protein	NA	NA	NA	NA
AXQ94535.1\|2467138_2467690_+	DUF1937 family protein	NA	NA	NA	NA
AXQ94536.1\|2467729_2468392_+	DUF1376 domain-containing protein	NA	NA	NA	NA
AXQ94537.1\|2468589_2469168_+	hypothetical protein	NA	NA	NA	NA
AXQ94538.1\|2469254_2469794_+	hypothetical protein	A0A0U2C0Z0	Paracoccus_phage	5.7e-08	31.9
AXQ94539.1\|2469897_2470311_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	6.4e-20	42.9
AXQ94540.1\|2470571_2471009_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
AXQ94541.1\|2470995_2472654_+\|terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	2.6e-80	32.5
AXQ94542.1\|2472650_2473262_+	hypothetical protein	NA	NA	NA	NA
AXQ94543.1\|2473390_2474659_+\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	3.5e-24	26.1
AXQ94544.1\|2474655_2475573_+	S49 family peptidase	I3ULZ8	Rhodobacter_phage	1.7e-20	36.4
2475009:2475027	attR	NA	NA	NA	NA
AXQ94545.1\|2475634_2476141_-	DfsB family protein	NA	NA	NA	NA
AXQ94546.1\|2476408_2477743_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.3e-52	37.4
AXQ94547.1\|2477799_2478075_+	hypothetical protein	NA	NA	NA	NA
AXQ94548.1\|2478079_2478589_+	hypothetical protein	NA	NA	NA	NA
AXQ94549.1\|2478585_2478918_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AXQ94550.1\|2478914_2479388_+	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	1.6e-27	48.6
AXQ94551.1\|2479389_2479770_+	DUF3168 domain-containing protein	A0A0U2BX31	Paracoccus_phage	7.7e-28	54.0
AXQ94552.1\|2479779_2480220_+	hypothetical protein	A0A2P1N076	Streptomyces_phage	2.5e-06	34.4
AXQ94553.1\|2480216_2480603_+	hypothetical protein	NA	NA	NA	NA
AXQ94554.1\|2480686_2480923_+	hypothetical protein	NA	NA	NA	NA
AXQ94555.1\|2481013_2486032_+\|tail	tail tape measure protein	A0A0U4JEA4	Pseudomonas_phage	6.2e-48	53.0
AXQ94556.1\|2486031_2486922_+	hypothetical protein	NA	NA	NA	NA
AXQ94557.1\|2486938_2488423_+	hypothetical protein	A0A0S3UG21	Pseudomonas_phage	7.2e-13	31.8
AXQ94558.1\|2488429_2488747_+	hypothetical protein	NA	NA	NA	NA
AXQ94559.1\|2488750_2489086_+	hypothetical protein	NA	NA	NA	NA
AXQ94560.1\|2489319_2489637_+	hypothetical protein	I3UM16	Rhodobacter_phage	2.8e-23	57.9
AXQ94561.1\|2489669_2489891_-	hypothetical protein	NA	NA	NA	NA
AXQ94562.1\|2489883_2490156_-	BrnT family toxin	K4NX81	Burkholderia_phage	1.1e-15	49.4
AXQ94563.1\|2490384_2491191_+	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	2.1e-83	57.8
AXQ94564.1\|2491244_2492054_+	hypothetical protein	A0A0B5A5A2	Paracoccus_phage	3.1e-66	50.2
AXQ94565.1\|2492066_2492573_+	hypothetical protein	F8TVB7	EBPR_siphovirus	1.1e-10	50.6
AXQ94566.1\|2492788_2494480_+	hypothetical protein	Q7M2A9	Enterobacteria_phage	7.0e-12	32.1
AXQ94567.1\|2495397_2496600_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.5e-97	48.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP031751

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

345745 : 406150

uncultured_Caudovirales_phage(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ95454.1\|345745_346051_+\|transposase	transposase	NA	NA	NA	NA
AXQ95455.1\|346996_348214_-	chromate efflux transporter	NA	NA	NA	NA
AXQ95456.1\|348227_348434_-	hypothetical protein	NA	NA	NA	NA
AXQ95457.1\|348436_348847_-	chromosome condensation protein CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.8e-06	37.5
AXQ95458.1\|348848_349253_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
AXQ95459.1\|349755_350796_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
AXQ95460.1\|350903_351086_+	hypothetical protein	NA	NA	NA	NA
AXQ95461.1\|351090_351642_+	hypothetical protein	NA	NA	NA	NA
AXQ95462.1\|351885_353691_+	amidohydrolase	NA	NA	NA	NA
AXQ95463.1\|354461_355952_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	4.2e-170	65.7
AXQ95464.1\|355963_356809_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	9.4e-50	40.2
AXQ95465.1\|357661_358339_-	NYN domain-containing protein	NA	NA	NA	NA
AXQ95466.1\|358680_359757_+	patatin-like phospholipase family protein	NA	NA	NA	NA
AXQ95911.1\|359786_360971_-	MFS transporter	NA	NA	NA	NA
AXQ95467.1\|361011_364065_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	9.9e-33	19.1
AXQ95468.1\|364061_365147_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXQ95469.1\|365143_365866_-	hypothetical protein	NA	NA	NA	NA
AXQ95470.1\|366644_368447_+	SLC13 family permease	Q6A201	Oenococcus_phage	5.0e-16	32.5
AXQ95471.1\|369451_370654_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.5e-97	48.2
AXQ95912.1\|371291_371753_-	recombinase family protein	NA	NA	NA	NA
AXQ95472.1\|372424_376264_-	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	4.7e-40	29.0
AXQ95473.1\|376256_376820_-	YdcF family protein	NA	NA	NA	NA
AXQ95474.1\|377244_378603_-	GntP family permease	NA	NA	NA	NA
AXQ95475.1\|379163_380036_+	multidrug DMT transporter permease	NA	NA	NA	NA
AXQ95476.1\|380409_380682_-	hypothetical protein	NA	NA	NA	NA
AXQ95477.1\|381666_382754_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.6e-47	39.5
AXQ95913.1\|382770_383064_+	hypothetical protein	NA	NA	NA	NA
AXQ95478.1\|383564_384011_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
AXQ95479.1\|384014_384257_-	plasmid stabilization protein	NA	NA	NA	NA
AXQ95480.1\|386160_387024_+	hypothetical protein	A0A059NT77	Lactococcus_phage	7.4e-26	33.7
AXQ95481.1\|387429_388869_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
AXQ95482.1\|389886_390618_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
AXQ95483.1\|390794_391034_+	hypothetical protein	NA	NA	NA	NA
AXQ95484.1\|391157_391886_-	sensor histidine kinase	NA	NA	NA	NA
AXQ95485.1\|392523_400845_+	glycosyl transferase	NA	NA	NA	NA
AXQ95486.1\|400903_401176_+	hypothetical protein	NA	NA	NA	NA
AXQ95487.1\|401346_401760_-	hypothetical protein	NA	NA	NA	NA
AXQ95488.1\|402354_402975_-	SOS response-associated peptidase	A0A291AUP1	Sinorhizobium_phage	9.7e-28	38.8
AXQ95489.1\|403521_403929_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AXQ95490.1\|403925_404261_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	1.8e-20	50.0
AXQ95491.1\|405118_406150_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

410529 : 462506

Liberibacter_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ95496.1\|410529_410934_+\|transposase	transposase	NA	NA	NA	NA
AXQ95497.1\|410930_411284_+\|transposase	transposase	NA	NA	NA	NA
AXQ95498.1\|412313_413366_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXQ95499.1\|414798_415176_-	response regulator	NA	NA	NA	NA
AXQ95500.1\|415241_418766_-	PAS domain-containing protein	NA	NA	NA	NA
AXQ95501.1\|418924_419197_-	hypothetical protein	NA	NA	NA	NA
AXQ95502.1\|420923_421841_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AXQ95503.1\|421980_424242_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	M4QT32	Loktanella_phage	4.1e-286	65.4
AXQ95504.1\|424509_425466_-	hypothetical protein	NA	NA	NA	NA
AXQ95505.1\|425778_426090_+	DUF4258 domain-containing protein	NA	NA	NA	NA
AXQ95506.1\|426104_427817_+	hypothetical protein	NA	NA	NA	NA
AXQ95914.1\|427849_429376_+	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	5.6e-45	27.1
AXQ95507.1\|429372_430593_+	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	7.3e-11	28.7
AXQ95508.1\|430592_433724_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	5.3e-66	27.7
AXQ95509.1\|433765_434815_+	hypothetical protein	NA	NA	NA	NA
AXQ95510.1\|435025_435790_-\|transposase	transposase	K4HZD4	Acidithiobacillus_phage	1.1e-68	55.8
AXQ95511.1\|435803_437342_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.5e-130	46.9
AXQ95512.1\|437819_438509_+	hypothetical protein	NA	NA	NA	NA
AXQ95513.1\|438549_440829_+\|transposase	transposase	NA	NA	NA	NA
AXQ95514.1\|440832_441825_+\|transposase	transposase	NA	NA	NA	NA
AXQ95515.1\|441821_443678_+	hypothetical protein	NA	NA	NA	NA
AXQ95516.1\|443915_444245_+	hypothetical protein	NA	NA	NA	NA
AXQ95517.1\|444276_444657_+	hypothetical protein	NA	NA	NA	NA
AXQ95518.1\|445056_445368_+	DUF4258 domain-containing protein	NA	NA	NA	NA
AXQ95519.1\|445383_447099_+	hypothetical protein	NA	NA	NA	NA
AXQ95915.1\|447494_448582_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.6e-47	39.5
AXQ95520.1\|448823_450470_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
AXQ95521.1\|452231_452699_-	DUF45 domain-containing protein	NA	NA	NA	NA
AXQ95522.1\|452611_453724_-	hypothetical protein	NA	NA	NA	NA
AXQ95523.1\|453981_454857_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.1e-08	29.2
AXQ95524.1\|455109_455574_-	nucleoside deaminase	NA	NA	NA	NA
AXQ95525.1\|455570_456065_-	cupin domain-containing protein	NA	NA	NA	NA
AXQ95916.1\|456336_456687_+	ABC transporter related protein	NA	NA	NA	NA
AXQ95526.1\|456875_458003_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.2e-20	33.3
AXQ95527.1\|457999_458905_+	sugar ABC transporter permease	NA	NA	NA	NA
AXQ95528.1\|458904_459717_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
AXQ95529.1\|459738_461022_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXQ95530.1\|461089_461890_+	phosphodiesterase	NA	NA	NA	NA
AXQ95531.1\|461921_462506_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage