CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031759	Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete sequence	3 crisprs	cas3,DEDDh,WYL,DinG,csx1,RT,csa3	1	0	5	0
CP031760	Pseudoalteromonas piscicida strain DE1-A chromosome 2, complete sequence	0 crisprs	csa3,cas3,DinG,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031759_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031759_1

230261-230360

Orphan

Consensus_repeat	Method
GTAGCAGCGATTTTATATCGCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031759_1

>merge|CP031759|1|230261-230360|CRISPRCasFinder
GTAGCAGCGATTTTATATCGCGACCAGCAAAAAAGGTCGTTCTCTGATAAAGAGTGCGGCCTTTTTTAATGCCTGGTAGCAGCGATTTTATATCGCGACC

>CP031759|1|1|230261-230360|CRISPRCasFinder
GTAGCAGCGATTTTATATCGCGACC	AGCAAAAAAGGTCGTTCTCTGATAAAGAGTGCGGCCTTTTTTAATGCCTG
GTAGCAGCGATTTTATATCGCGACC

Protein	Signature genes	Signature genes Name	Protein_function
CP031759.1\|AXQ96532.1\|240081_240783_+\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722
CP031759.1\|AXQ96514.1\|219033_219255_+\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|226060
CP031759.1\|AXQ96516.1\|219484_220498_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
CP031759.1\|AXQ96524.1\|230595_231612_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|379885
CP031759.1\|AXQ96527.1\|237685_238288_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
CP031759.1\|AXQ96525.1\|231648_233742_+\|TRAP-transporter-fused-permease-subunit	unknown	unknown	gnl\|CDD\|273983
CP031759.1\|AXQ96519.1\|222534_223599_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
CP031759.1\|AXQ96526.1\|236694_237006_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
CP031759.1\|AXQ96518.1\|221595_222066_-\|sigma-D-regulator	unknown	unknown	gnl\|CDD\|236962
CP031759.1\|AXQ96533.1\|240796_241210_+\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
CP031759.1\|AXQ96520.1\|223677_225525_-\|M1-family-peptidase	unknown	unknown	gnl\|CDD\|341062
CP031759.1\|AXQ96530.1\|239445_239724_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
CP031759.1\|AXQ96521.1\|225705_226725_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
CP031759.1\|AXQ96523.1\|229070_230255_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
CP031759.1\|AXQ96515.1\|219275_219488_-\|SlyX-protein	unknown	unknown	gnl\|CDD\|377222
CP031759.1\|AXQ96522.1\|226711_227704_+\|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA	unknown	unknown	gnl\|CDD\|237010
CP031759.1\|AXQ96531.1\|239736_240069_+\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
CP031759.1\|AXQ96517.1\|220655_221519_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|236791
CP031759.1\|AXQ96528.1\|238284_238587_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
CP031759.1\|AXQ96529.1\|238604_239429_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488

Protein	Function_ID	Function_description	E-value
CP031759.1\|AXQ96532.1\|240081_240783_+\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	1.92174e-152
CP031759.1\|AXQ96514.1\|219033_219255_+\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|226060	COG3529, COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only].	8.66765e-20
CP031759.1\|AXQ96516.1\|219484_220498_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.07136e-29
CP031759.1\|AXQ96524.1\|230595_231612_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|379885	pfam16868, NMT1_3, NMT1-like family.	1.34807e-112
CP031759.1\|AXQ96527.1\|237685_238288_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	1.78452e-112
CP031759.1\|AXQ96525.1\|231648_233742_+\|TRAP-transporter-fused-permease-subunit	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	2.20249e-145
CP031759.1\|AXQ96519.1\|222534_223599_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
CP031759.1\|AXQ96526.1\|236694_237006_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.8009e-70
CP031759.1\|AXQ96518.1\|221595_222066_-\|sigma-D-regulator	gnl\|CDD\|236962	PRK11718, PRK11718, sigma D regulator.	5.40378e-76
CP031759.1\|AXQ96533.1\|240796_241210_+\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	6.05584e-96
CP031759.1\|AXQ96520.1\|223677_225525_-\|M1-family-peptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
CP031759.1\|AXQ96530.1\|239445_239724_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	4.39814e-67
CP031759.1\|AXQ96521.1\|225705_226725_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	1.55607e-167
CP031759.1\|AXQ96523.1\|229070_230255_+\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
CP031759.1\|AXQ96515.1\|219275_219488_-\|SlyX-protein	gnl\|CDD\|377222	pfam04102, SlyX, SlyX. The SlyX protein has no known function. It is short less than 80 amino acids and is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C-terminus. The protein may be a coiled-coil structure.	7.20808e-19
CP031759.1\|AXQ96522.1\|226711_227704_+\|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	7.62254e-154
CP031759.1\|AXQ96531.1\|239736_240069_+\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	4.02152e-64
CP031759.1\|AXQ96517.1\|220655_221519_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|236791	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	1.33329e-74
CP031759.1\|AXQ96528.1\|238284_238587_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	3.50853e-46
CP031759.1\|AXQ96529.1\|238604_239429_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0

>CP031759.1|AXQ96523.1|229070_230255_+|elongation-factor-Tu
MAKEKFERVKPHVNVGTIGHVDHGKTTLTAAITNVLAKVYGGEAKDFASIDNAPEERERGITISTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLSRQVGVPYIIVFMNKCDMVDDEELLELVEMEVRELLSEYDFPGDDLPLIQGSALKALEGEEQWEAKIVELAEALDSYIPEPERDIDKPFIMPIEDVFSIQGRGTVVTGRVEAGIINVNDEVEIVGIKETTKTTCTGVEMFRKLLDEGRAGENIGALLRGTKRDEVERGQVLCKPGSIKPHTKFTSEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGDIQLPDGVEMVMPGDNIKMTVELIVPIAMDEGLRFAIREGGRTVGAGVVATIEE
>CP031759.1|AXQ96522.1|226711_227704_+|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA
MKTPDHKKQTILAALNKGEFVSGQELGAQLGISRAAIAKHIAALQEMGVDIFRVNGRGYKLNYSLPLIHQSKLNTLWQQQFQSECPIEYHAIIDSTNSELMRRLQDKQNMDSGHVLVAEMQQAGRGRRGRVWQSPFGANLYYSYYWQFDAGMQAAMGLSIAVGLAVYDALKVLYGISIELKWPNDIYLNQQKLAGILVELEGQVEGPCHLVIGIGLNICMPESASKHIDQAWTDLQTHLGQIDKNQLVVQLTHSLSERLAQYKESGLSEMVTEWNSLNVFKGDAVTLSTGQREWRGICEGIDMQGGLLLRQDGELRAFYGGEISLRKVIS
>CP031759.1|AXQ96521.1|225705_226725_+|UDP-N-acetylmuramate-dehydrogenase
MTSLQSYHTFSLPSGCESLIVITDPHALVELDFSRPFFLIGEGSNTIFLEDYAGTVIKLATLGIDIEQHDDDYVVTVAAGENWHQLVIKLLDKGIDGLENLALIPGTVGAAPVQNIGAYGVEVSQFITAVRGFDIAERCFITLTNAECEFGYRDSVFKHCLKDKFVITEVTLTLPKRWQPTLSYGPLQNLSNTATAQEICEAVIVTRNSKLPDPTTLANAGSFFKNPVVDRAFAAQLQSKFPEMPAFDVDNDHVKLAAGWLIDKAGLKGCHRGAIRVYEKQALVLVHSGGSTGEELKQLVSHIQQTVWQKFAVLLEHEVRLITKHGECQLQSVECHENA
>CP031759.1|AXQ96520.1|223677_225525_-|M1-family-peptidase
MIKLSALTLSLAMAGLVHTADVNAAVDQHTYANLNDVITTHLHLDLDVDFEDKQLEGFVEHTLDWQNRQARTLVLDTRDLEIDKVMYQGKDDKWHTAKFDLAKRDDVKGAKLTIHFKEQAKKARIYYNSLPVASGLQWLTPQQTASKSHPFMYSQSQAIHARSWIPVQDTPAMRVTYSARVHTPKDVRAVMSADNTGALIKDGDYWFDMPQAIPPYLIAIGAGNLEYKEMSHQTAIFAEPQILDASVAEFNDTQAMIDKTNAMYGEYAWGRYDLLMLPPSFPFGGMENPRLSFITPTVVAGDKSLVNLIAHELAHSWSGNLVTNATWEDLWLNEGFTSYVENRIMEEVFGRDRAVMEQALDAAGLRAQLKTIAAPDTRMNLELNGRDPDDAFSSVPYTKGQLFLIYLEEKFGRDKFDKFVKAYFKTFSFKSLTTDEFVAYLDKNLLQQYPGIVSLEKAKEWIYEPGLPSDAPNPTSDAFEKVDALTQAWLKDEKTLADLPTDSWTVHEWLHFINNLPRDLAIERMEALDKAFKLTQSTNAERAFAWYMLAVGNGYQAIYPDLEKHLVSIGRRKLIVNLYKSLIKNDKRDWAYRVYQQARPGYHPLAQGTIDALFE
>CP031759.1|AXQ96519.1|222534_223599_+|uroporphyrinogen-decarboxylase
MSELKNDRYLRALLKQPVDVTPVWMMRQAGRYLPEYRATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFETGEGPKFERPIQSLDDVKKLPKLDPTDELGYVMNAVSTIRRELKGEVPLIGFSGSPWTLATYMIEGGSSKTFGKIKKMAFAEPQTLHLLLDKVADSVIDYLNAQVKAGAQSLMIFDSWGGVLSPRDYKEFSLQYMHKIVDGLIRENDGRKVPVTLFTKNGGQWIEAIAATGCDAVGLDWTIDIADAKRRVGDKVALQGNMDPSMLHGTHERIREEVQHILAGFGEGTGHVFNLGHGITPDVDPENAGVFINAVHEFSRQYHK
>CP031759.1|AXQ96518.1|221595_222066_-|sigma-D-regulator
MLSQLEQAQQKWGGSHSVIDAWLAERQELLVLYYKVAGCSPTRNGKALPEQVDIQSFCQILMDYLSAGHFEIYDNIVEACQEKGPESAKLAQSLYPKITDTTDTALDFNDKYAEVNQEIQELADFDNDLSVLGETLELRFQLEDELIDNLYSNHTE
>CP031759.1|AXQ96517.1|220655_221519_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MWLAPFLINIKLTMAPHIKLSCASIGVLIVGTVGELRMKQTIKLSLVAASVLALVACNKKAEEQKPAEVKLDTEVQQQAYGIGASVGNFLQKDLADKKELGIELDQELLMRGFKDALAGEAKLDEAKIREVLTALDSSVREKQAAKAEADAKKNKEEGDKYLAENAKKEGVTVTDSGLQYEVLSEGDGKKPVATDMVKVHYKGTLLDGSEFDSSYARNEPASFRLNQVIAGWTEGLQLMNVGSKYKFTIPADLAYGTRDLGKIPANSTLVFEVELLDIEGEAEEATE
>CP031759.1|AXQ96516.1|219484_220498_-|hypothetical-protein
MVKLVNIKWTSLLFACAMFSCFTLTGCGPDTSKAVMTVEHASRGAFSAALSADGRYSLVSSIEHGAVLWDNQEQGLKFQWRHSDAPDDLIHSLALANDNSTAVTATDKTFAIWSVANGQNLGYFEIESGTIRDIAISNTGRYLLYARSDNVVVHLDLESGRRIEFLGHQENINSIAMSPNGHFALTGGNDYTAYFWNTRTGQVIHRFNHPSRVTKVALDDQGRFAFTADSMKKASIWQLTSGDLKAQLQYIARQKIFSAVRFNQDATLLATGSPNRELILWRVGDGERLQTWRVQPREGSRPKSAVVFDVAFQDQDTALLTESSSGLLEKFAQVKKP
>CP031759.1|AXQ96515.1|219275_219488_-|SlyX-protein
MNEIENRITELEAKLAFQEDTIETLNEELKAHQLRLAKMQRQIELLAEKMKEGRDPGLMPQHQEPPPPHY
>CP031759.1|AXQ96514.1|219033_219255_+|YheV-family-putative-metal-binding-protein
MFIRGVELKVKKRFIAGASCPECQKIDVMMLYKEHDVEKVECVECGHVMSQPKDAVQASTRQFEQVIGVFKPE
>CP031759.1|AXQ96524.1|230595_231612_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MLGLSARTISAVLSITMSLCTFASFANVDKDRSYILATASSGGTFYPVGVAIATLTKLKVTPQHGMSVSAITSAGSGDNLKLMRNKEAELAILQGLYGAWATQGTGAMAPVGKQDYLRSVTMLWQNVEHFVIAKKYAKTGNVSDLKNLYSQGFGIGKRNSGTEGSGKHIMAALGVDSDKFTLVHKGYAGSSSALQNGQIAGMNIPAGVPVSAITSAYAADANGITVLDFTDEQLNKVNAEVELWSRFEIPANTYPGQTNAIKTIAQPNFLAAHKDMSEEDVYLLTKAIYENLVFLQTIHKATKAMAIKKALMGLPAKLHPGALKYYKEIGIAVPAHLQ
>CP031759.1|AXQ96525.1|231648_233742_+|TRAP-transporter-fused-permease-subunit
MSNSSNEQSTLAAPTAARERIAFYLAILTSLLHLYFNLVATWPDNYISAIHFMLFGSIILLTLPLRVGKLAVLSSVIDIGLFIGLIVSCGYLVLYSDALAARNYEFATADWIASSTAVLLALELVRRCMGWFIPMMILLAMSYVLFLGQYIDGVFHFAGLSAETILFRNYFDDGLFGPIAKISWTFVFLFILFGAFLVQAGTGDFIIRFANALVGRMVGGQGLVAVVSSGMMGSVSGSAIANTAATGVITIPLMKNAGFPAKFAAAVEAGASTGGQLIPPIMGAGVFVMASYTQIPYLTIIAAAFVPALLYFASIAIFVRIQAMRLNIQPALESEQLSAWQELKSGWHHLLPIVLLVALMIYGFTPTYAVSIATLSVCLFSLFSPAPMRWSKILAALATATENSAKTAILLVAIGMLVNCISISSLGVTFSLMINEWAGASLILLLVLIALASLIIGMGLPVTASYIVLATLSAPALYGLISQSALVESIVNGQLNETATMMMSMMAPALGEIYNQPNITETQVFTILASLPPEAIDIIRSSQFDTTHLAMMLLSAHMIIFWLSQDSNVTPPVCLVAFTAAGIAKTPPVATGIEAWKTAKALYIVPLLFAYTPFIGGSNFEIMQVFFTALVGMYALVAAIYGYAEAKLNKSIRMMLTFLGVALVWPHQIISVDIVAALCVVTIVIKQVIDNRTAREC
>CP031759.1|AXQ96526.1|236694_237006_+|30S-ribosomal-protein-S10
MSNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLIDIVEPTDKTVDALMRLDLAAGVDVQISLG
>CP031759.1|AXQ96527.1|237685_238288_+|50S-ribosomal-protein-L4
MELAIKGAGALEVSEATFGREFNEALVHQVVVAYAAGARQGTKAQLTRSEVRGGGKKPFRQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQDRLVVVENFGLEAPKTKELVAKLKELELKDVLIVTEEVDENLFLSARNLYKVDTRDVAGIDPVSLIAFDKVLITAAAVKQLEEALA
>CP031759.1|AXQ96528.1|238284_238587_+|50S-ribosomal-protein-L23
MIREERLLKVILAPHISEKSTVSAEENNTIVFKVAKDATKAEVKAAVEKLFEVEVTGVRTLNVKGKTKRTGMRFGRRSDWKKAYVTLKEGSELDFVGGAE
>CP031759.1|AXQ96529.1|238604_239429_+|50S-ribosomal-protein-L2
MALQKCKPTSAGRRHVVKVVNPDLHKGKPYAPLLEKNSKSGGRNNNGRITVRHIGGGHKQHYRVIDFTRTKDGIPAKVERLEYDPNRSANIALVLYADGERRYIIAPKGLKAGDAIQSGVDAPIKVGNTLPMRNIPVGSTVHNVELKPGKGAQIARSAGAYVQILAREGQYVTLRLRSGEVRKVESDCRATLGEVGNAEHMLRSLGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTSGGRHPVSPWGVPTKGYKTRKNKRTDKFIVRRRTK
>CP031759.1|AXQ96530.1|239445_239724_+|30S-ribosomal-protein-S19
MPRSLKKGPFIDLHLLKKVEKALESGDKKPIKTWSRRSMIIPNMIGLTIAVHNGRQHVPVFITDEMIGHKLGEFAPTRTYRGHAADKKAKKR
>CP031759.1|AXQ96531.1|239736_240069_+|50S-ribosomal-protein-L22
MEALAKHKFASGSAQKARLVADQIRGLPVDRALEILAYSPKKAAVLVKKVLESAIANAEHNEGADIDELKVAKVFVDEGPTMKRIMPRAKGRADRILKRTSHITVVVSDS
>CP031759.1|AXQ96532.1|240081_240783_+|30S-ribosomal-protein-S3
MGQKVHPTGIRLGISKPWVSTWYANTKDFSEQLFGDHKVRTFLTKELKAASVSKIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRQAVTKLAGVPAQINIAEVRKPELDAQLVADGISSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRADIDYATSEALTTYGIIGVKVWIFKGEVIGGLPLVQEQEKPAKRAPKKAKKSAK
>CP031759.1|AXQ96533.1|240796_241210_+|50S-ribosomal-protein-L16
MLQPKRTKFRKVHKGRNRGLATSGNKVSFGSFGLKATGRGRMTARQIEAARRAMTRHVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGSVEYWVAEIQPGKVLYEMEGVSEELAREAFDLAARKLPFKTTFVTRTVM

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Crispr_ID: CP031759_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031759_2

713552-713890

Orphan

Consensus_repeat	Method
TGGTGGGTTGTACTGGACTTAAACCAGTGACCCTCGCCTTG	PILER-CR

3 spacers

The CRISPR arrays of CP031759_2

>merge|CP031759|2|713552-713890|PILER-CR
TGGTGGGTTGTACTGGACTTAAACCAGTGACCCTTGCCTTGCTCAGGCTTAGTGCGATGCTTTGCATCGGCCACTCTATCTAAAAAAATAAAGTGGTGGGTTGTACTGGACTTGAACCAGTGACCCTCGCCTTGTAAGGGCGATGCTCTCCCAACTGAGCTAACAACCCAAATTGTGTTTCAATTTATACTCTTGAATAGAGTTATGGTGGGTTGTACTGGACTTAAACCAGTGACCCTTGCCTTGCTCAGGCTTAGTGCGATGCTTTGCATCGGCCACTCTATCTAAAAAAATAAAGTGGTGGGTTGTACTGGACTTGAACCAGTGACCCTCGCCTTG

>CP031759|2|1|713552-713890|PILER-CR
TGGTGGGTTGTACTGGACTTAAACCAGTGACCCTTGCCTTG	CTCAGGCTTAGTGCGATGCTTTGCATCGGCCACTCTATCTAAAAAAATAAAG
TGGTGGGTTGTACTGGACTTGAACCAGTGACCCTCGCCTTG	TAAGGGCGATGCTCTCCCAACTGAGCTAACAACCCAAATTGTGTTTCAATTTATACTCTTGAATAGAGTTA
TGGTGGGTTGTACTGGACTTAAACCAGTGACCCTTGCCTTG	CTCAGGCTTAGTGCGATGCTTTGCATCGGCCACTCTATCTAAAAAAATAAAG
TGGTGGGTTGTACTGGACTTGAACCAGTGACCCTCGCCTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP031759.1\|AXQ96908.1\|716181_717771_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|214599
CP031759.1\|AXQ96910.1\|719117_721439_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
CP031759.1\|AXQ96903.1\|707286_708012_+\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|367907
CP031759.1\|AXQ96900.1\|702655_702952_-\|hypothetical-protein	unknown	unknown	unknown
CP031759.1\|AXQ96905.1\|710100_710613_+\|DUF2919-domain-containing-protein	unknown	unknown	gnl\|CDD\|378569
CP031759.1\|AXQ96901.1\|703052_703814_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349982
CP031759.1\|AXQ96912.1\|722272_722794_-\|YfiR-family-protein	unknown	unknown	gnl\|CDD\|379335
CP031759.1\|AXQ96902.1\|703878_707268_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
CP031759.1\|AXQ96907.1\|711078_712710_-\|response-regulator	unknown	unknown	gnl\|CDD\|381123
CP031759.1\|AXQ96898.1\|701057_702065_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
CP031759.1\|AXQ96909.1\|717875_718796_-\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
CP031759.1\|AXQ96904.1\|708077_710096_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
CP031759.1\|AXQ96916.1\|727687_727960_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
CP031759.1\|AXQ96911.1\|721445_722165_-\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013
CP031759.1\|AXQ96899.1\|702161_702599_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
CP031759.1\|AXQ96917.1\|728024_728996_-\|octaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182813
CP031759.1\|AXQ96915.1\|725691_726417_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
CP031759.1\|AXQ96906.1\|710614_711055_+\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|376583
CP031759.1\|AXQ96914.1\|724577_725606_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181902
CP031759.1\|AXQ96913.1\|722790_724413_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
CP031759.1\|AXQ96908.1\|716181_717771_+\|PAS-domain-S-box-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.26023e-58
CP031759.1\|AXQ96910.1\|719117_721439_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
CP031759.1\|AXQ96903.1\|707286_708012_+\|cell-division-protein-ZipA	gnl\|CDD\|367907	pfam04354, ZipA_C, ZipA, C-terminal FtsZ-binding domain. This family represents the ZipA C-terminal domain. ZipA is involved in septum formation in bacterial cell division. Its C-terminal domain binds FtsZ, a major component of the bacterial septal ring. The structure of this domain is an alpha-beta fold with three alpha helices and a beta sheet of six antiparallel beta strands. The major loops protruding from the beta sheet surface are thought to form a binding site for FtsZ.	2.70354e-48
CP031759.1\|AXQ96906.1\|710614_711055_+\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	1.13738e-69
CP031759.1\|AXQ96905.1\|710100_710613_+\|DUF2919-domain-containing-protein	gnl\|CDD\|378569	pfam11143, DUF2919, Protein of unknown function (DUF2919). This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.	2.38408e-32
CP031759.1\|AXQ96901.1\|703052_703814_+\|RNA-methyltransferase	gnl\|CDD\|349982	cd18109, SpoU-like_RNA-MTase, SAM-dependent RNA methylase related to SpoU-TrmH. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	5.91849e-71
CP031759.1\|AXQ96902.1\|703878_707268_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
CP031759.1\|AXQ96907.1\|711078_712710_-\|response-regulator	gnl\|CDD\|381123	cd17589, REC_TPR, phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators. Response regulators share the common phosphoacceptor REC domain and different output domains. This subfamily contains uncharacterized response regulators with TPR repeats as the effector or output domain, which might contain between 3 to 16 TPR repeats (each about 34 amino acids). TPR-containing proteins occur in all domains of life and the abundance of TPR-containing proteins in a bacterial proteome is not indicative of virulence. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members in this subfamily may contain inactive REC domains lacking canonical metal-binding and active site residues.	5.04746e-42
CP031759.1\|AXQ96898.1\|701057_702065_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
CP031759.1\|AXQ96912.1\|722272_722794_-\|YfiR-family-protein	gnl\|CDD\|379335	pfam13689, DUF4154, Domain of unknown function (DUF4154). This family of proteins is found in bacteria. Proteins in this family are typically between 172 and 207 amino acids in length. Many members are annotated as valyl-tRNA synthetase but this could not be confirmed.	1.1034e-19
CP031759.1\|AXQ96904.1\|708077_710096_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
CP031759.1\|AXQ96916.1\|727687_727960_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.66757e-55
CP031759.1\|AXQ96911.1\|721445_722165_-\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	3.9818e-153
CP031759.1\|AXQ96899.1\|702161_702599_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	2.11086e-13
CP031759.1\|AXQ96917.1\|728024_728996_-\|octaprenyl-diphosphate-synthase	gnl\|CDD\|182813	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.	1.08011e-155
CP031759.1\|AXQ96915.1\|725691_726417_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	2.40888e-109
CP031759.1\|AXQ96909.1\|717875_718796_-\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	3.37307e-117
CP031759.1\|AXQ96914.1\|724577_725606_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	1.22032e-85
CP031759.1\|AXQ96913.1\|722790_724413_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.36643e-31

>CP031759.1|AXQ96907.1|711078_712710_-|response-regulator
MSAPSIQNAKMLIVEDQPLALSYMKQSLEQLDFRNLKFAESADSAKELCTINKFDLIVCSFGLAKKQNGYQFYEELRYKQLIRSSTAFIFISSETSPELVHSVIELQPDDFLVKPFSIKELQNRIERVLKRKQALRHINLLVDDKNYSKALKALDLELDNKDHNYTSLLLKLKGELLLRLNQLEEAKSFYKSVLALQKFTWAKLGLVEALITNNEDVIAQKMLKTLIERPETRLPALDLLSKLEIKLNQYENAQQLLEQAIEMAPRNINRQQSLGRVAQINHDYEASYKAHKDIASFARYSIHDKPEVYLNAARAGIDFALSTDQSDQVTRLTRQTQQYLSDLKQQFPNAQTQAQIDVLNARVHYLKDEHKKAKQLLEQLEDEPVIRSVDSTLDKAKALHEVGLNHKAQELFSQVIAHCERHNSSADPVTMHYLYQQQQEKKEITMGPRELNNHAVTQFNKGQYETALEAFTQAFRIMPKNSGIALNLLQCMSDSCAKSGSTFNSNLAKRCTTLLNQSELDSEQQIRYGKLKAKLNEMKLDFE
>CP031759.1|AXQ96906.1|710614_711055_+|peptide-methionine-(R)-S-oxide-reductase
MLKWLDILNFARNGNPVAPRRVDKSDQQWQSELAPETYMITRKKGTERPFSSQSCQLFEPGKYYCVCCGELLFDAEEKFDSGSGWPSFTQPAAVEAVAYHGDKSHGMTRVEITCNVCDSHLGHVFPDGPEPSGLRYCVNALAMEKK
>CP031759.1|AXQ96905.1|710100_710613_+|DUF2919-domain-containing-protein
MKPVIRYGPEYWDKYGVYRTPIAFNLALVVLLRPLLIWGFSALARRPDLDLMSLFFESKFHFFVATGIACIALIPTVVFSLRRPTSSPKLAAVWRYMRLPLILTAVLDLAWLILQAGKTHYSFSPYIAVQIVLVSWVLLYLIKSRYLSCFFGDWPLPVEEQKTEVNKREN
>CP031759.1|AXQ96904.1|708077_710096_+|NAD-dependent-DNA-ligase-LigA
MSENIESQVAALRRQLEDYNYQYYVLDNPSVPDAEYDRVMRQLMALEQQHPELQSPDSPSQKVGGEALSKFEQVTHRVPMLSLDNAFDESEFTAFNRRLKERLLTSKDVAFCCEPKLDGLAVSILYRDGVLVQAATRGDGQVGENITENVKTIRNIPLKLRGDHIPHEVEVRGEVFMDTAGFIKLNETAQAKGDKTFANPRNAAAGSLRQLDSKITAKRPLMFYAYSMGLVEGGELANEHYAQLQQLQGWGLPMSPETKLVDNAQQALAYYQDIMTRRAELPYEIDGVVIKVNDKAQQEQLGFVARAPRWAIAFKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNGDEIARLGVKIGDTVIVRRAGDVIPQVTQVVLDRRPDDAKEIEFPDTCPVCDSHVERVEGEAVARCTGGLVCRAQRKEAIKHFASRKALDIDGLGDKIVEQLVERELIKTPADLFILRQGHFESLERMGPKSAKNLVAALEEAKQTTLAKFLYSLGIREVGEATAQNLANHFLTLEKVMAASIDTLQQVSDVGVVVAQHIHSFFAEQHNQEVVTALIEVGVTWQDVAAPSEDTQPLAGLTYVLTGTLSQLNRNDAKSRLQALGAKVAGSVSKNTDAVYAGEKAGSKLTKAQELGVEVFDEEALIALLNKYE
>CP031759.1|AXQ96903.1|707286_708012_+|cell-division-protein-ZipA
MATELRWALIVISALVIGGLLIHGLWSVRKKSSDKVSKKEPNELKEQTPNHDKEPDEPEIGEMTFSAVDDEPATEGIIATEAPETEVQTESSGSEEAEPEENAIEPQDFIILHVEMPEGLKMAGSRLLPTVLSLGFKYSDEGFFNRHLEPSGNGPVLFRLVNMYNPGTFDIDNMEQFSTAGISLFMTLPCEGDNLAAFNMLHSASKKLAEEFGATVLDKDREPLTVEAVRGYVEKVREFAA
>CP031759.1|AXQ96902.1|703878_707268_+|chromosome-segregation-protein-SMC
MRLSSIKLAGFKSFVEPTKIPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDAMTDVIFNGSTKRKPISQASVELIFDNTQGRLPGTFADRNQIAIKRLVTRDGQSLYFLNGSKCRKRDITDIFLGTGLGPRSYAIIEQGMISRLIESKPQELRVFLEEAAGISKYKERRRETQTRIKSTRENMERLLDVRQELQSQLDKLALQAQQASEYKSLKSQERDLKSWIAILKWQSLEQKQAIKAKEIAKLNEKLAFFNEAHSGHDSILATLEHEIKHFNDGYEQAQHSVHRIETQLATLEQQKVNLTDKKRQLIEQSQILKSQQQEVIEAQDEQAEYVASSAEKVDEVSEQLEIALLQLEEIQLTNEQSDAEQTQLEAQFSSAQKQYQQIHAQVQQGASQLAQQQQAKLHIEKRLVELQEQAEAHHASMLENDLAEAQDAHHQLVQAMAKLQSQAGKLQSQEQANKEEILLAESHAQKALQALQEVQSEIKALSRWANEASETSATTMLSQLVVESGYEECVEAALLGLTHLVVEQSEINTLWPIELEVPCDSIATKISSGLFPSFLTKIKLCAEPTDFRSCEQFLLGVTKSGVIVGDNFKAKAKSNEESGALKRYAQLQSCHIQLSHLQKLAEEAEQVVAQKRIALEDTQACLLKTQQCVHEKAQAIASHKTKVEMLDENLSAWRELGQKIQEQLDIIAQERAEVIEQLELYTEQQLQRDELLAQAQETQQLAEAKLTEFKQHSQSRRAALQEAQQLVHTTKLTSQQAESELQLSNSKLEHLQHRHDEINQRIEQTQEDILLCEEPLAEAHEDIELLLAQHLEAKAQKQTMLDTLNQAKENLSQKQAALKDAQGEVSKLNASLQQVKLEEQSLMIKAQAALEPLQELGRTLKAELAQLPEDANLGQYQANLSRVSNDLGKLGAVNLAAIEEFEEAKARKTYLDTQLDDLTNALETLEAVIRKIDKETKTRFSATFNQVNEDLAELFPKVFGGGSAYLELTSDDLLESGVSIMARPPGKKNSTIHLLSGGEKALTALSLVFSIFRLNPAPFCMLDEVDAPLDDANVGRFCRLVEEMSQTVQFIYISHNKVAMEMAGRLTGVTMAEPGVSRMVAVDIEQAVQMAQA
>CP031759.1|AXQ96901.1|703052_703814_+|RNA-methyltransferase
MVNPTFEVHMISKNQQKLLRALGQKKYRKQHGLYLVQGEKNVIELVDAGLAVEQLFATSEFMTKYKSKLVNIACVEAEEEVLSKVSTLVSNNAAIAVVAMPPTEEINTAGLVLALDGVSDPGNLGTIIRLADWYGLTQLVVSENCADQFNPKVISATMGSFVRVNVVRTDLEAFLQQYQGECYGAFLGGESVHQCQFSRNAVLVMGSESHGISDSIAAHINKKVTIPAFGGAESLNVAMATGIILDNIKRCHS
>CP031759.1|AXQ96900.1|702655_702952_-|hypothetical-protein
MSPELTLILLNFILLFVAYVFVYPKLKEKSLASISKQDLLVTAVSLAVSGSLYYGKDIEFSLMFFESNWVVFTIVAFSVIEIPFLLWFKRRYNVKFGE
>CP031759.1|AXQ96899.1|702161_702599_+|energy-transducer-TonB
MKVQLLISVLVAGTCWEAEAKTLHGDVKSTQLSPSIEASIWQKKGNSIPKYPPALAKRKLAGCTVLKVMIDADGKTEDIEQIASIPSKTLAKHAKQLIKSWQWSPIDTQHLGREEKLMRIDFCLGGADLADAQMRCEAQAKLDCE
>CP031759.1|AXQ96898.1|701057_702065_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MSTAKSAVTVLGAGSYGTALAICFARNGHQVTLWGRNSEHVEALAAERKNQRYLPDIQFPNTLELEADLETAVKSSECILVVVPSHAFADTLKKIKPMLLENAKVAWATKGLEPNTGRLLQEVALDVLGDDVPLAVLSGPTFAKEMAAGLPTAISVSSICAKFREELAELLHCGRSFRVYSNEDFIGIQLGGAVKNVIAIGAGMSDGFGFGANARTALITRGLAELCRLGCALGARSETFMGMAGLGDLILTCTDNQSRNRRFGLALGTGKSVDEAMSSIGQVVEGYRNTKEVYLLAKRTGIEMPITEQIYQVLYEQKDVKEAAMALLGREKRAE
>CP031759.1|AXQ96908.1|716181_717771_+|PAS-domain-S-box-protein
MTKGRADYTGKENDYPSSYNLLSTTNVKGQIKYANSQFCEVAGFSLSELEGKPHNIVRHPTMPKAAFKNLWDYIEAGKPWMGMVKNRCKNGDHYWVNAFVTPIKDSSGKTVEYQSVRTKPSREVVNRAEGIYADLNNGVSLSKFTRSSWSLSAQMMAIIVVFYALSMLISTLSSPWNYLAETLLTLTVLFVTYSRLAPVRSLSEKAKKVYDNPLMQKVYLNKVNDVASIELALLARESELRAVLGRVKDASATVSEYATKTVQECKTSSDILNRQQAQTGSLATAINQMTVSIGEIASNTNNAAQQSEAALESVVKGNKAVDDNMENNYALSEELSRTQKDIEDLNAQTVNIEGVVDVIRGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTQDSTAEINGIIADLRQRAERAVTAIQSGVERSSECVLKAEGTKVSLETINTIVNEISGLNYQIATSTEEMSSVSNELNANAVTISGLADESMESARKTHETMKKTEQALDNQEVLVEQFIRKLNSTHR
>CP031759.1|AXQ96909.1|717875_718796_-|GTP-cyclohydrolase-I-FolE2
MQNNMPDIAHNASALQTGTLDWVGMGNIELPLVLESKGLNQVTVTAKADAFVNLQKEDAKGIHMSRLFLALDILSCEQVLTPSTLKQLLDNFLSTHSDLSTGAKVTLRFELPIRRPSLLSKKMGWKSYPITLDATLNNGIYKLELALDVAYSSTCPCSAALSRQLIQNAFQQSFDGKQLDFHSVHDWLGSTEGIVATPHSQRSIANIKVKLIDNCNEFEILELIELVENELKTPVQAAVKREDEQEFARLNGQNLMFCEDAARKLKALLNQQTYSDFYVKINHYESLHAHDAVAYAVKGVEDGYSV
>CP031759.1|AXQ96910.1|719117_721439_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MTENSFGSWARILSNLVEKYGNKRAFAIAYAFTLFVAVILSCMFYYVALGVVEIVDISALFFLTAVIAPALIMMSVAAMREVHSSKAYLESATQQEKMLNQTLKDNINRLNSEIDERKIALHAKHRAIDELRKEIAERKKTQQELAQQGMLLRSIVDSSPDLFYYRDENGVFAGCNKMFELVMGKSSEELIGKSVEQIYSKQYLPKVLETDSQVSETQQPLTLDVEYPVKGEPRWFEMRKLPFINDKGEYIGLLAFGRDITSRKEAEQALETAYKDKGKFIATLSHELRTPLNGIVGLTRMMLDTDLTAQQKSWCNTVFSSAETLGNIFNDIIDLDKIDREQLDIATDSINVSDFINDVVNFAGLIADQKGLEFTINRSGVLDVYALLDPTRLRQVLWNLINNAVKFTHKGNVTLECRRENRDDGPWLTISVIDTGMGISEDQLERIFEMYYKAPDASGSNAIGSGIGLAVTKALVQAMQGTIAVTSQEGKGSRFDVEIPLQLCNAPKEQSYAGRSLYILLVEDVPLNAEIATNLLEQRGHEVIWAETGEDALSFVETEDDLDLILLDMQLPDINGDVVARQIREDSHFDHLPIVALTANVRSAEQELEGINVQGALAKPINTTKLDKMLAELFGIEAQKNKQSIDIREALSQPEYSDLDIETICDFVESMGAAAFQRSCDLFTKLNPKYCQELREAVAQNDIEEYGAVAHKVKGAAGSVGLQLAQLQAKKMELESEGKEVKTLLDWVSELEAKIEEGQEALHPLIAKLAEDQ
>CP031759.1|AXQ96911.1|721445_722165_-|two-component-system-response-regulator-ArcA
MQTPVILIVEDEDVTRLNLVSLFEAEGYKVIEAIDGDDMHDKLTSHDDVNLVIMDINLPGKNGLILARELRQKKNIGLIFLTGRDNDVDRILGLEIGADDYITKPFNPRELTIRARNLISRTGSSAEESTIDSNGVITFNGWELDENSRCLTSPTGDSKRLPKGEYRALRLMLDSPGRIFSREQLIKHMTGRELRANDRTVDVTIRRIRKHFETDNNTPELISTIHGEGYRFIGKLDAQ
>CP031759.1|AXQ96912.1|722272_722794_-|YfiR-family-protein
MRLINLVILLLFVSLNTAAKSPDQVRSAFLYQMAKFVEFADENTKTSIQFCFYSLESGPASELKSATKLNVRGKPIELVEAKKTWSYSELSSACDITYIDETSENDILSAWTDTIESNMLTVGESIEFLERGGIASLVQEGSKIRLYINKQALEKQYFIVRSRLLAVSKFHPN
>CP031759.1|AXQ96913.1|722790_724413_-|sensor-histidine-kinase
MSKQLTKTSIRKVLISAVMLVTALCLSLSISISTYLDVKEQKQLIINKIEMIADIVAFNSQITILFDDRKTEDARLKSFQQVDIIKNIHIYAMDDVTNSPVFFTSYNASRTPPVPLKVNQIEELKTPKVSEDYIELIKPVIYEGNIEGYVYVRGGLERLSNYINKKILVDIALTLFVLLLVLLVSRGIQKRIATPIEGLSALLQDVSKNHNYSARAPGSNIAELNVLANNLNIMLARTENQLERHKADKQEIKQLNQSLEEKVNQRTIALREANQELLNALERMHQYQNQIIENEKMASLGQMVAGVAHEVNTPIGLGITGSTLLRDKLSDIREAFQTKSLTSKQLERFVNDGIENLDLIYRNLNRAAELVSSFKRLAVSQDLEVNSQIDLSNLLTEVVASMRAELSTKQPEVTIDCDTGLAIESKAGPLQQVLEQLISNSLLHGFKDQQNNSISITVKSSMGQLTIEYADNGMGVPKAIKKRIFDPFVTTRRGEGGSGLGMHLVYNLVTQALGGSITLDEEFSQGAKFIITLPLSGNLK
>CP031759.1|AXQ96914.1|724577_725606_-|methyltransferase-domain-containing-protein
MQFTNPSLLLLRNEEELIASNILVINHQRDGFLRELKALNPSSAIHAFSFDFADHLHADKIADVKSYVAHQLPQLQNIDLVIYYYPKSKPEAQMVFDNIRHLSTAETRLLVVGENKSGVKSAEKQLKEHAAHCYKLESAKHCILYEFDQLTANPSFDVSHYVQTFSVRIAKTEFTAASLPGVFNHGKLDAGTQLLLENVTLPYKGKVLDFGCGAGLIACYALLNSPTLKFTCLDVNALALFATQQTLALNNLSATLLLSDGLSELNGKFNLILSNPPFHTGLSTDYDIAEQFLHNIKRHMDTKSNIQLVANSFLKYPPILEAQFEQFEVVTKNTKFAIYKAQ
>CP031759.1|AXQ96915.1|725691_726417_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MNESSKSALEQAQEEGKYIRKVRSFVKREGRLTKGQAASLEKCWPAMGLEHQQGLLDFTEVFGNSNEVVLEIGFGMGKSLVEMAKNNPQQNFIGIEVHRPGVGACLMDADEQGITNLRVFEHDAVEILADCIADGSLAKLQLFFPDPWHKKRHHKRRIVQLEFAEKIRQKLKVGGVFHMATDWENYAEHMLEVMSAAPGYQNQSQSNDYVPRPDFRPLTKFEQRGHRLGHGVWDLMFKRIS
>CP031759.1|AXQ96916.1|727687_727960_+|oxidative-damage-protection-protein
MARTVFCQKLQKEAPGLDFQLYPGEVGERIFNNISKEAWQQWQHKQTMLINEKHLNMMDPEHRQMLEEQMVGFLFEDKEVEIEGYRPPEK
>CP031759.1|AXQ96917.1|728024_728996_-|octaprenyl-diphosphate-synthase
MDIKTIQNLVEQDMLDVNQLIHQQMQSDVALVKQLGLYIVNSGGKRIRPMLALLAARALGYEGDKHITLATIVEFIHTATLLHDDVVDESLLRRGEPTANAEFGNAASVLVGDFIYTRSFQLMVGLGNMEVMQILADATNIIAEGEVLQLMNCNDPDTTEKSYMQVIYSKTAKLFEAATLLPAVVLEQSDEIKTALKLYGMHLGTAFQLVDDILDYSANAELLGKNIGDDLAEGKPTLPLIYAMQHANTQQTAQIRTAIESGNGLDHLEDILATLAETKALDFTMAKAQEEAQKAIAQLSVLPDSVHKEALVALAKLSVDREY

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Crispr_ID: CP031759_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031759_3

2483083-2483194

Orphan

Consensus_repeat	Method
TCGGAGTAGGAGCTGCTTTACGCAGCGATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031759_3

>merge|CP031759|3|2483083-2483194|CRISPRCasFinder
TCGGAGTAGGAGCTGCTTTACGCAGCGATCTCTAAAAGCCATTACCACACAACATCACCACCCGATATAACCAGCTTTGCATCGGAGTGGGAGCTGCTTTACGCAGCGATCT

>CP031759|3|2|2483083-2483194|CRISPRCasFinder
TCGGAGTAGGAGCTGCTTTACGCAGCGATCT	CTAAAAGCCATTACCACACAACATCACCACCCGATATAACCAGCTTTGCA
TCGGAGTGGGAGCTGCTTTACGCAGCGATCT

Protein	Signature genes	Signature genes Name	Protein_function
CP031759.1\|AXQ98320.1\|2475584_2476115_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP031759.1\|AXQ98328.1\|2482132_2482564_-\|hypothetical-protein	unknown	unknown	unknown
CP031759.1\|AXQ98326.1\|2478925_2480908_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
CP031759.1\|AXQ98336.1\|2491978_2493574_+\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
CP031759.1\|AXQ98332.1\|2486228_2488388_-\|S46-family-peptidase	unknown	unknown	gnl\|CDD\|371067
CP031759.1\|AXQ98334.1\|2489137_2489668_-\|hypothetical-protein	unknown	unknown	unknown
CP031759.1\|AXQ98323.1\|2477050_2477929_-\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|184001
CP031759.1\|AXQ98327.1\|2480910_2481819_-\|ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
CP031759.1\|AXQ98322.1\|2476436_2476664_-\|hypothetical-protein	unknown	unknown	unknown
CP031759.1\|AXQ98319.1\|2472898_2474872_-\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
CP031759.1\|AXQ98335.1\|2489664_2491731_-\|DUF2235-domain-containing-protein	unknown	unknown	gnl\|CDD\|370774
CP031759.1\|AXQ98338.1\|2494082_2494844_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238901
CP031759.1\|AXQ98331.1\|2484297_2486082_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
CP031759.1\|AXQ98325.1\|2478301_2478922_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
CP031759.1\|AXQ98329.1\|2483240_2483696_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
CP031759.1\|AXQ98324.1\|2477942_2478302_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
CP031759.1\|AXQ98321.1\|2476104_2476416_-\|GTP-cyclohydrolase	unknown	unknown	gnl\|CDD\|225225
CP031759.1\|AXQ98337.1\|2493726_2493957_+\|hypothetical-protein	unknown	unknown	unknown
CP031759.1\|AXQ98333.1\|2488539_2489067_-\|hypothetical-protein	unknown	unknown	unknown
CP031759.1\|AXQ98330.1\|2483777_2484284_+\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|133385

Protein	Function_ID	Function_description	E-value
CP031759.1\|AXQ98320.1\|2475584_2476115_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.75347e-14
CP031759.1\|AXQ98326.1\|2478925_2480908_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
CP031759.1\|AXQ98336.1\|2491978_2493574_+\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
CP031759.1\|AXQ98332.1\|2486228_2488388_-\|S46-family-peptidase	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	0
CP031759.1\|AXQ98338.1\|2494082_2494844_-\|peptidylprolyl-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.60742e-52
CP031759.1\|AXQ98323.1\|2477050_2477929_-\|protoheme-IX-farnesyltransferase	gnl\|CDD\|184001	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.	1.63234e-150
CP031759.1\|AXQ98327.1\|2480910_2481819_-\|ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	2.70668e-148
CP031759.1\|AXQ98319.1\|2472898_2474872_-\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	3.51666e-135
CP031759.1\|AXQ98335.1\|2489664_2491731_-\|DUF2235-domain-containing-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	1.63905e-25
CP031759.1\|AXQ98331.1\|2484297_2486082_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	4.69601e-120
CP031759.1\|AXQ98325.1\|2478301_2478922_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	2.09719e-102
CP031759.1\|AXQ98329.1\|2483240_2483696_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	9.43654e-18
CP031759.1\|AXQ98324.1\|2477942_2478302_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.83734e-33
CP031759.1\|AXQ98321.1\|2476104_2476416_-\|GTP-cyclohydrolase	gnl\|CDD\|225225	COG2350, COG2350, Uncharacterized protein conserved in bacteria [Function unknown].	2.00822e-14
CP031759.1\|AXQ98330.1\|2483777_2484284_+\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|133385	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.	4.78228e-89

>CP031759.1|AXQ98328.1|2482132_2482564_-|hypothetical-protein
MPLLSYVRHTATADDTTYQGCTITRAQLFGRIFSVLSALMMFNTALLFTGMLGDVAELEVLFADNSLPDSVLVMLGAFWAQPILSLQLLIGLYWLVFHTILPTRAGVVLRKTAFASTEAIQPQPVPSAHGCRAPPFGYRCLFA
>CP031759.1|AXQ98327.1|2480910_2481819_-|ubiquinol-oxidase-subunit-II
MNKRSVVNYAFASLGLMLTGCSGGILDPKGQIGMDEKSLIIIATVLMLLVVVPVIILTLYFAWKYRDGRDHEIYAPKWAHSNKIEAVVWTIPIVIIIVLGVITWRSTQSLDPYKPLEGKGEHLTVQVVSLNWKWLFIYPEQGIATVNELVFPANVPVEYKITSESTMNSFFIPQLGSQIYSMAGMETQLHLIANEPGTFKGFSANYSGAGFTGMKFDAIATKDKASFDNWVADVKANGEALTAGRYTQLAEPSEYHPVEYFGSVEQGLFHTIVMKYMQGHGEMSYYAKPEHAAHPHHGKAEE
>CP031759.1|AXQ98326.1|2478925_2480908_-|cytochrome-o-ubiquinol-oxidase-subunit-I
MSLFGKLSIEAIPYHEPIIMVTLAVVAIVGLIVAAMVTKHKKWGVLWHDWITSIDHKRLGVMYIILALIMLMRGFADAIMMRTQLAMATSGAAGYLPPEHYDQIFTAHGVIMIIFMAMPFMIGLMNIILPLQIGARDVAFPFLNNLSFWLTAGGAILINLSLAFGEFAKTGWVAYPPLSELSFSPGVGVDYYIWALQISGLGTLLTAVNFLVTVFKMRAPGMTLMKMPIFTWTCTWANILVAASFPILTAVLAMLTLDRYMDFHFFTNEAGGNAMMYINLFWAWGHPEVYILILPAFGIFSEIISTFTGKRLFGYKSMVYASGAISILGFIVWLHHFFTMGSSANVNAFFGVMTMVIAVPTGVKLFNWLFTMYRGRLRITVPVLWTLGFMVTFTVGGMTGVLLAIPGADYVLHNSLFLIAHFHNTIIGGAVFGYLAGFAYWFPKVMGYKLDERWGKASFWCWLVGFFVAFMPLYVLGFLGMTRRLNHTNTPEWNIWLYIACIGAFIIMFGIVFQVVQLVVSYKNREQLQDTTGDPWNGHTLEWSTDSPPQYYNFAKTPVVDDIDAWTEMKEQGQAYQKPAHYQPIHMPKNTPAGVLISASLTVFCFAMIWHIWWLAAVGFVSAIAVFIKRCYTRDVDYYVQVDEIEQIESAHLSRALQEG
>CP031759.1|AXQ98325.1|2478301_2478922_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MSAITPATLHALEDAHEHAEHDTGSNTVFGFWLYLMTDCLLFASFFATYAVLYMNTAGGVSGKDIFELGFVAVETAALLLSSITFGFAMIAANKQKKLQTLSWLAVTFAFGAVFIGMEVYEFHHLIVHGHGPQHSAFLTSFFSLVGLHGMHVTAGLIWMTVMMIEVTRRGLKPQTVTRLSCLSLFWHFLDIVWICVFTVVYLMGAM
>CP031759.1|AXQ98324.1|2477942_2478302_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSHSESQALAQMDVHEHEHDSHGSVKSYLIGFVLSVILTAIPFAAVMSGSLSSSTTFWMLVTTALVQIWVHLKYFLHLNFVTEEGKASTLSFIFSALIIVMVVGLSVWIIYESNAMMMY
>CP031759.1|AXQ98323.1|2477050_2477929_-|protoheme-IX-farnesyltransferase
MLRRYFQVTKPGIIMGNLISVAGGFLLASRGEVDWLLFALTLLGLSLVVASGCVVNNVIDRDIDAAMARTKTRVTVTGEISSVAALSHSLVLGLSGFGLLAYFTNWIALSFAAFGFFIYVGVYSLYMKRNSVYGTVVGSLSGAVPPVVGYCAVSGVFDSGAAILLLMFCLWQMPHSYAIAIFRFEDYRVANIPVLPVAQGVEKAKHHIVLYIAIYALVVMLLPLSGYTGIAFMAVACTTSFWWLLMALKGYQRDLDLHGWARQVFAFSIVNIIVLSIAMAIDNHSTVSAMLY
>CP031759.1|AXQ98322.1|2476436_2476664_-|hypothetical-protein
MDIGITEVLLLFTAIFIASFLLFKVVLWAKKMPKGAYLFLALMPLISLFPIPPPVFKNVAKAKQEQRKKAPKSEP
>CP031759.1|AXQ98321.1|2476104_2476416_-|GTP-cyclohydrolase
MPASIFIVNLTYITEIEQVEPLLAPHIAFLERFYANGTFIASGRKIPRTGGVILAKASSEAELLDIVRQDPFYVAEVARYDIIEFVPSKFTSCFTEVEKYINS
>CP031759.1|AXQ98320.1|2475584_2476115_+|TetR/AcrR-family-transcriptional-regulator
MSTKRQQLIDCAMGLFYQHGIHAIGINEVLKSSGIAKKTLYNHFESKEALVLATLEQRHHLFISWLSRCLENAQTNEQLTEQLFSALDQWINNKVAVLGDFRGCYFINTAAEFGELTNPINQLCQRHKLAVKALLKQALNDADDAAVERLFLLSEGIISTAYTCHDTGVAKRALKN
>CP031759.1|AXQ98319.1|2472898_2474872_-|DNA-helicase-IV
MAATELLCLIYQLIALHLFSRLFYGVRGAKCTKEGLHLKSKSADSFIPFSAMTVPPAPQRGWFAQKVQIKQGHETYVLSVKNQGADELVQQLQRLWILHHGKHLQVKVRKIEQLLKHRYLSHHNQNVAGHVCSALWSSWQHLDDSVIPNSLKSQVATVREIALWSEREIAEFQSAFVDHYLAKDANYFDKIESNPLTVAQRMACVIQDDRQLLLAGAGTGKTSVIKAKVGYLLHRKLAQANELLLLAYGNDAATEMRQRCQPLCDTLNCSTFHSLGMQIIEAVTGEKPTISNLATDKKLLKQFIADTIHSLRQENHFERDFTVFLEGTGIQQASQAIDLISQVLPLMKHAQIMREVEQLLTQFSKQMSVVMPILAEYQLYLANESSIDFDDMLERAIYYVESGQFISPWKFILVDEFQDISRVRAKLIQALLDKKSGSQLFAVGDDWQAIYRFSGGDMRLTTEFSKYFGKSTTTYLDKTFRYPQTILDTASEFICRNPEQITKHITSHTAGVAGQGVVKVVVNDELSQAQQLLTLIEQRNEGKTSVALLARNHRALPDKSKIAQWRQLYPQLIISSNTFHGAKGTEADFSIVFGLQHRNFPSQVKTPAFVDALLPAQGAFPDAEERRLFYVALTRAKKQCFLLAPNDAPSYFLEEIA
>CP031759.1|AXQ98329.1|2483240_2483696_-|flavodoxin-family-protein
MKTVVIYSSSNPNGNTYQSAKALAEEKRAELIYLDRYKIGEYCYKHSHSDDDFVNLFRWVLGFEHIIFASPVYWYAVTPRMKAFIDRITDFMDIEALKPELRALREKQFSILSTSCQEKAPAPFTEMLVGTFEYLGMKLQEQRHVHYPYAD
>CP031759.1|AXQ98330.1|2483777_2484284_+|redox-sensitive-transcriptional-activator-SoxR
MKTEKLLRDEPNLSVGKVAQRADVAVSALHFYENKGLIRSWRNNGNQRRYKKDVLRRIAIIKAGQKMGITLGEIKETLDTLPDSRTPTKADWAKLSRAWQTKLDEKIAYMQRLRDYVDGCIGCGCLSMKSCPIYNPDDIVAKEANGAVWLDEPDKANKAKSCYDSENH
>CP031759.1|AXQ98331.1|2484297_2486082_+|DUF885-domain-containing-protein
MKKTALCMALAMSMGLTGCSLSPSSVETTPSASQQTVATNAQFADFSQQFINNLWKQYPEASLWAGFGKYDDIITVPTQATRDASVAFSRAQLAKLQQFDLANLSNSQKIDYHLIENRLKRDIWHIETFKSWQWNPSNYNVSYGFATILNSRFKTDDEKLKLVLARLQYVPAYYEAAQNNISNPTLEYTQLAIAQNQGAFSVLNDELLDKLATSLLTAEEKALFKQRFAAAKSAINGYVSYLTNLEKELSESGNARSFRIGEKLYEEKFAFDIQSGYTAKQMYEKAMADKTRVTNEMVKIVDQLWPKYFADKPRPESDIDAIATLIKHLSVKHVKRENFVSEIKAQIPELEKFVMEKDLITLDPEKPLVVRETPEYMRGFAGASISAPGPYDKKENTYYNVSPLDSMSDEQAESYLREYNHWILQILNIHEAVPGHYTQLVYSNESPSLVKSILSNGAMIEGWAVYTERMMLEEGYGNFEPEMWLMYYKWNLRVICNTILDYGIQVKGISKEEGLDLLMNGAFQERAEAEGKWRRATLSQVQLTSYYSGYREIYDFRETQKQKLGKEFDLKAFHEEFLSFGSAPVKYIRQLMAK
>CP031759.1|AXQ98332.1|2486228_2488388_-|S46-family-peptidase
MRIKAISAAMVLAFSQYVAADEGMWQPHQLPELESILKSKGLEIDAKSISKLTEFPMNAVISLGGCTASFVSPKGLVVTNHHCAYGSIQYNSTTDNNILENGFLAKQPSEDLPAAPGSRVYVTKEVSNVTDKVNAGTDSLTGKARFDAIDSKRKQLVAECEQDESYRCNVYTFHGGLEYYLIKSLEIKDVRLAYTPAMGVGKYGGDIDNWMWPRHTGDFAFYRAYVGKDGKPAEFSKDNVPYNPESFLSVNAKGVQEGDFVMVTGYPGRTNRYRIASEVDYVFNTVYPMVRKHNSKYVALIEENAPEGSQARIAYESTIAGYNNYIKNFGSMIESFKKGSMYSRKQQFERDLSTWINADADRKAKYGAVLNELSELVAQSQSHYERDMMVGYIHRSQMMSTARQLYRLAVEKQKPDAERESGYQERDMPKIKAGLQRMTRRYDETVDKAIMLYFMELYAALPKEARLAEVDKQLQLENGFNKAKHQALLDEMYANSKLADEKARLWMLDLELEQLNQSSDPFIQYAKAIFAVMKQIEDEEKELAGKQQSARPALMEAIIAYNKSQNKPVYADANSTLRVTYGTVGGYSPQDGLVATPFTSLEGLLAKNTDVEPFNAPKKQQQLIREKVYGQYTGGMNTVPVNFLSNVDTTGGNSGSPTLNGKAELVGLLFDGVYESIIGDWDYDKNLNRSIHVDSRYMLWVMDKVDNAQNLLDEMKIVK
>CP031759.1|AXQ98333.1|2488539_2489067_-|hypothetical-protein
MNNKPYTVLLAVILLCSCSSHTELEKLNIGISAYEKSDLMVKLIFDEQFSPPAGAVGGGWGNAVGSGTFWGAEIPYKVKAQWWDYKQGKHYRAALTVQRDKAYKIAGNLPSITHYTGETETDVEPYIIFGFGEKGEVKMWISNAPFDGVEGRILEEIGSAQAAWEPFELTEEMFR
>CP031759.1|AXQ98334.1|2489137_2489668_-|hypothetical-protein
MNNKLYTVLLAVILLCSCSSHSELEKLHIGISAYEKSDLMVKLIFDDRFSPPAGAIGCCWGNAQKKGVFWGAEIPHKVQAEWWDYKQGRHYNAEFSVQRDKAYKIAGNLPSVTYYTGKTETDVDPYIIFGFGEKGEVKMWISNSQFASGVKGRILEEIGSAQATWEPFELTDEMFN
>CP031759.1|AXQ98335.1|2489664_2491731_-|DUF2235-domain-containing-protein
MKIVEEKHNWLIDQQIDELEVLAPHTTTAHLPLEIRTQLKPHASDWIVLQQRHNWRHVKRDEFTRVFIKTKKGLQSVRSGSAAGSREQLIIVKRKSYFKAEIRNNAFTSSGGVDPNQPIGASQLDPLTPVEQVLASINVDKSPEVAEKRILVSLEGELAVSFVIQGANTPTLSRASEGATQTPLIFGKLSEDGRYSLKAKILGVPEQVLFNNVPYADLLDIEKVKSLKIGAEGGVQLIKHRVSGEGNIHLYFISEPPSIGIFFDGTGNNKYNDILDPFDDKEPTNIAKLHELYENEGKFTTSSYIEGVGTSAGKKDSTIDLAIAYSFDERLIEAVSDLDKFINNNGLIELCNTLLVDCFGFSRGAAAARAFVNLINEMREKQDTKLANKEVVFRFVGIFDTVASIGGDGDNDHGELYARDELDDAARLDLNQASAGAVYHLTAWDERRDKFPLSSLKNKGGSLFANHKEDYLPGVHSDIGGGYAPISIDIEYPLKRIRGIPGNPEHEAKVQQEKLAIEHKYQWPGINVDMVYRFKRLRYGASRSGRDKDFYTTYRPVWRRKIDNTLAHFGLHQMYNEAVQHGVPLRAMARLQSIYPYELSNEVATLVPKALKAGPASQAWQKLYEHYIHISSRFTGAVDKMAHGAERKAKYATENGQREMFYNNAKALPQVQIWKAYKNGNKSIWRKG
>CP031759.1|AXQ98336.1|2491978_2493574_+|ABC-F-family-ATPase
MLSCNNITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILSKELEPSAGNVNYDPNERIAKLNQDQFAYEQYTVVDTVIMGHKELWEIKQERDRIYSLPEMSEEDGMRVADLETQFAEMDGYSAEAKAGELLLGVGIPTEQHYGLMSEVAPGWKLRVLLAQVLFAEPDIMLLDEPTNNLDIYTIKWLEDVLNQRDCTMIIISHDRHFLNSVCTHMADIDYGDLRIYSGNYDEYMFAATQARERLLSDNAKKKAQIAELQQFVSRFSANASKAKQATSRAKQIDKIQLEEVKASSRQNPFIRFEQEKPLFRNALELISLSQGYDDTLFSDLNGLVEVGEKVAIIGENGAGKTTLLNTLAGRKAPQAGEYKWSENANIGYYAQDHADEFEKDLDLFQWMEQWQQPGDDEQVVRGFLGRMLFSQNDIKKSVKVISGGEQGRMLFGKIMMHKPNILLMDEPTNHMDMESIESLNLALEQYEGTLFFVSHDRQFVSSLATRIWEIKDGKITDFHGTYDEYLAKKAAEAV
>CP031759.1|AXQ98337.1|2493726_2493957_+|hypothetical-protein
MERLQNMYSIMLLSKLKASFPESCDINHHTFSLPHVDQQLLEDVVTTHLNEGLIQADGRDQYSLTTKAIALFGEDK
>CP031759.1|AXQ98338.1|2494082_2494844_-|peptidylprolyl-isomerase
MFKLNSLLLASTLLGSFAANATIVEFQTSHGSFQVNLFDESTPKTVENFLKYVDNGRYSDTVIHRVIPDFVVQGGGFKYEGDVPLDAIATYDAVKNEPKWSNVKGTIAMAKVANRPDSATSQWFFNLVDNSKNLDVDNGGFTVFGQVTGDGMEILAAIAKIPRCGNVPLVNFTDEQCKDSNSEPGAANFVTINAITVLDDDPKSAQGLSPKANTLIDQVPDKPSTDSDSSGGSMFAGLMLLAGIVGFRRRFHR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031759_2	2.2\|713686\|71\|CP031759\|PILER-CR	713686-713756	71	CP031759.1	713145-713215	11	0.845
CP031759_2	2.2\|713686\|71\|CP031759\|PILER-CR	713686-713756	71	CP031759.1	713257-713327	11	0.845

1. spacer 2.2|713686|71|CP031759|PILER-CR matches to position: 713145-713215, mismatch: 11, identity: 0.845

taagggcgatgctctcccaactgagctaacaacccaaattgtgtttcaatttatactctt	CRISPR spacer
taagggcgatgctctcccaactgagctaacaacccaaattgtgtttcaatttatactctt	Protospacer
************************************************************

2. spacer 2.2|713686|71|CP031759|PILER-CR matches to position: 713257-713327, mismatch: 11, identity: 0.845

taagggcgatgctctcccaactgagctaacaacccaaattgtgtttcaatttatactctt	CRISPR spacer
taagggcgatgctctcccaactgagctaacaacccaaattgtgtttcaatttatactctt	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1946375 : 2014137

Leptospira_phage(22.22%)

transposase,plate,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ97902.1\|1946375_1947716_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AXQ97903.1\|1947732_1948455_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AXQ97904.1\|1948459_1952170_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AXQ97905.1\|1952177_1953170_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
AXQ97906.1\|1954807_1955326_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AXQ97907.1\|1955337_1956864_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AXQ97908.1\|1957117_1957510_+	hypothetical protein	NA	NA	NA	NA
AXQ97909.1\|1958288_1958774_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
AXQ97910.1\|1958852_1959254_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AXQ97911.1\|1959253_1960978_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXQ97912.1\|1960981_1961944_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXQ97913.1\|1961972_1964660_+	type VI secretion system ATPase TssH	A0A1C3S747	Escherichia_phage	4.0e-86	30.0
AXQ97914.1\|1964686_1966726_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
AXQ97915.1\|1966742_1967165_+	hypothetical protein	NA	NA	NA	NA
AXQ97916.1\|1967182_1968334_+	hypothetical protein	NA	NA	NA	NA
AXQ97917.1\|1969349_1970252_+	hypothetical protein	NA	NA	NA	NA
AXQ97918.1\|1970248_1971328_+	DUF4150 domain-containing protein	NA	NA	NA	NA
AXQ97919.1\|1971331_1974424_+	hypothetical protein	NA	NA	NA	NA
AXQ97920.1\|1974401_1975361_+	hypothetical protein	NA	NA	NA	NA
AXQ97921.1\|1975518_1976130_+	hypothetical protein	NA	NA	NA	NA
AXQ97922.1\|1976119_1976470_+	hypothetical protein	NA	NA	NA	NA
AXQ97923.1\|1976557_1977520_+	hypothetical protein	NA	NA	NA	NA
AXQ99644.1\|1977752_1978932_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.8e-114	64.5
AXQ97924.1\|1979283_1981791_+	hypothetical protein	NA	NA	NA	NA
AXQ97925.1\|1982110_1984150_+	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA
AXQ97926.1\|1984219_1986388_+	hypothetical protein	NA	NA	NA	NA
AXQ97927.1\|1986665_1987706_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXQ97928.1\|1987715_1990832_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.8e-69	23.4
AXQ97929.1\|1990992_1991874_+	patatin family protein	NA	NA	NA	NA
AXQ97930.1\|1991798_1991978_-	hypothetical protein	NA	NA	NA	NA
AXQ97931.1\|1992115_1992946_-	GntR family transcriptional regulator	NA	NA	NA	NA
AXQ97932.1\|1992948_1994280_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.6e-46	32.3
AXQ97933.1\|1994488_1995472_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
AXQ97934.1\|1995779_1997162_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
AXQ97935.1\|1997269_1998280_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	2.9e-37	36.5
AXQ97936.1\|1998478_1999516_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXQ97937.1\|1999519_2002612_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.5e-76	24.4
AXQ97938.1\|2002846_2003218_+	hypothetical protein	NA	NA	NA	NA
AXQ97939.1\|2003452_2003836_+	hypothetical protein	NA	NA	NA	NA
AXQ97940.1\|2003955_2004570_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
AXQ97941.1\|2004759_2005722_-	siderophore-like synthase	NA	NA	NA	NA
AXQ97942.1\|2005731_2008125_-	hypothetical protein	NA	NA	NA	NA
AXQ97943.1\|2008195_2008660_-	hypothetical protein	NA	NA	NA	NA
AXQ97944.1\|2009185_2010196_-	hypothetical protein	NA	NA	NA	NA
AXQ97945.1\|2010474_2011872_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	2.6e-81	35.9
AXQ99645.1\|2012100_2012535_+	ATP-binding protein	A0A291LB58	Pseudomonas_phage	2.9e-10	31.2
AXQ97946.1\|2012616_2014137_-\|transposase	ISNCY family transposase	A0A0M3LQE2	Mannheimia_phage	2.0e-18	42.5

DBSCAN-SWA_2

2033460 : 2044314

Vibrio_phage(28.57%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ97969.1\|2033460_2035407_-	hypothetical protein	A0A2I7RNF8	Vibrio_phage	5.3e-40	25.5
AXQ97970.1\|2036186_2036366_-	hypothetical protein	NA	NA	NA	NA
AXQ97971.1\|2036356_2036572_-	hypothetical protein	NA	NA	NA	NA
AXQ97972.1\|2036568_2036751_-	hypothetical protein	NA	NA	NA	NA
AXQ97973.1\|2036967_2037261_+	hypothetical protein	A0A2P1CKU5	Pseudoalteromonas_phage	5.9e-28	63.0
AXQ97974.1\|2037647_2038784_-\|head	phage head morphogenesis protein	B5TA65	Burkholderia_phage	3.3e-50	39.4
AXQ97975.1\|2038791_2039316_-	hypothetical protein	D4HTZ6	Vibrio_phage	9.9e-42	50.0
AXQ97976.1\|2039324_2039939_-	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	1.2e-41	43.5
AXQ97977.1\|2039931_2041416_-	DUF935 family protein	B5TA67	Burkholderia_phage	2.2e-54	37.5
AXQ97978.1\|2043649_2043901_-	hypothetical protein	NA	NA	NA	NA
AXQ97979.1\|2043897_2044314_-	glycoside hydrolase	A0A1Q1PW74	Pseudoalteromonas_phage	1.0e-28	50.4

DBSCAN-SWA_3

2062751 : 2121447

Pseudomonas_phage(28.57%)

capsid,tail,protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ98008.1\|2062751_2063690_+\|capsid	capsid protein	Q5ZQX7	Pseudomonas_phage	2.3e-65	43.7
AXQ98009.1\|2063747_2064212_+	DUF1320 domain-containing protein	NA	NA	NA	NA
AXQ98010.1\|2064211_2064655_+	phage virion morphogenesis protein	B5TA98	Burkholderia_phage	2.7e-08	36.0
AXQ98011.1\|2064666_2065104_+	hypothetical protein	NA	NA	NA	NA
AXQ98012.1\|2065267_2066167_+	hypothetical protein	NA	NA	NA	NA
AXQ98013.1\|2066515_2066857_+	hypothetical protein	NA	NA	NA	NA
AXQ98014.1\|2066816_2069804_+\|tail	phage tail protein	A0A0H5AWE4	Pseudomonas_phage	4.0e-10	25.4
AXQ98015.1\|2069832_2070972_+	hypothetical protein	NA	NA	NA	NA
AXQ98016.1\|2071049_2071655_+	hypothetical protein	NA	NA	NA	NA
AXQ98017.1\|2071654_2072242_+	hypothetical protein	NA	NA	NA	NA
AXQ98018.1\|2072225_2072624_+	hypothetical protein	NA	NA	NA	NA
AXQ98019.1\|2072616_2072814_+	hypothetical protein	NA	NA	NA	NA
AXQ98020.1\|2072810_2074835_+	hypothetical protein	X2L058	Enterobacteria_phage	1.1e-48	29.2
AXQ98021.1\|2074867_2075059_+	hypothetical protein	NA	NA	NA	NA
AXQ98022.1\|2075247_2076762_+	hypothetical protein	I3UMD4	Colwellia_phage	1.2e-34	48.8
AXQ98023.1\|2076764_2078147_+	hypothetical protein	NA	NA	NA	NA
AXQ98024.1\|2078155_2081101_+	hypothetical protein	A0A2I7R0J0	Vibrio_phage	5.0e-106	29.8
AXQ98025.1\|2081111_2081780_+	hypothetical protein	NA	NA	NA	NA
AXQ98026.1\|2081797_2082166_+	hypothetical protein	NA	NA	NA	NA
AXQ98027.1\|2082559_2084659_-	hypothetical protein	NA	NA	NA	NA
AXQ98028.1\|2084651_2085581_-	DUF1837 domain-containing protein	NA	NA	NA	NA
AXQ98029.1\|2086283_2086895_+	hypothetical protein	NA	NA	NA	NA
AXQ98030.1\|2086897_2088634_+\|transposase	transposase	NA	NA	NA	NA
AXQ98031.1\|2088921_2089890_+	AAA family ATPase	NA	NA	NA	NA
AXQ98032.1\|2089889_2091221_+	hypothetical protein	NA	NA	NA	NA
AXQ98033.1\|2091294_2091909_+	hypothetical protein	NA	NA	NA	NA
AXQ98034.1\|2092159_2093230_-	hypothetical protein	NA	NA	NA	NA
AXQ98035.1\|2093216_2093660_-	hypothetical protein	NA	NA	NA	NA
AXQ98036.1\|2094006_2094357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXQ98037.1\|2094939_2096184_-\|protease	carboxyl-terminal protease	NA	NA	NA	NA
AXQ98038.1\|2096228_2096801_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
AXQ98039.1\|2096843_2097482_-	hypothetical protein	NA	NA	NA	NA
AXQ98040.1\|2097498_2097873_-	glutathione metabolism protein	NA	NA	NA	NA
AXQ98041.1\|2097930_2098635_-	DUF541 domain-containing protein	NA	NA	NA	NA
AXQ98042.1\|2098851_2100546_-	NAD-dependent malic enzyme	NA	NA	NA	NA
AXQ98043.1\|2100718_2102479_-	gamma-glutamyltransferase	NA	NA	NA	NA
AXQ98044.1\|2103170_2105654_-	S9 family peptidase	NA	NA	NA	NA
AXQ98045.1\|2106009_2107158_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AXQ98046.1\|2107159_2107642_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
AXQ98047.1\|2107774_2107981_-	hypothetical protein	NA	NA	NA	NA
AXQ98048.1\|2108110_2108632_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXQ98049.1\|2108783_2109644_+\|protease	protease HtpX	NA	NA	NA	NA
AXQ98050.1\|2109688_2110168_-	N-acetyltransferase	NA	NA	NA	NA
AXQ98051.1\|2110282_2110486_+	hypothetical protein	NA	NA	NA	NA
AXQ98052.1\|2110673_2112179_+	hemolysin	NA	NA	NA	NA
AXQ98053.1\|2112429_2113125_-	dethiobiotin synthase	NA	NA	NA	NA
AXQ98054.1\|2113121_2113901_-	methyltransferase domain-containing protein	NA	NA	NA	NA
AXQ98055.1\|2113897_2115040_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
AXQ98056.1\|2115043_2116087_-	biotin synthase BioB	NA	NA	NA	NA
AXQ98057.1\|2117712_2119050_+	lysine 2,3-aminomutase	NA	NA	NA	NA
AXQ98058.1\|2119490_2120270_-	hypothetical protein	NA	NA	NA	NA
AXQ99647.1\|2120266_2121447_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.8e-114	64.5

DBSCAN-SWA_4

2131647 : 2197683

Staphylococcus_phage(15.38%)

integrase,transposase,tRNA

attL 2154513:2154528|attR 2206082:2206097

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ98068.1\|2131647_2132943_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-89	43.9
AXQ98069.1\|2132949_2133330_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.9e-10	37.0
AXQ98070.1\|2133332_2134673_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.6e-78	40.1
AXQ98071.1\|2134665_2135304_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AXQ98072.1\|2135303_2137913_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	5.4e-88	49.6
AXQ98073.1\|2138028_2138508_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
AXQ98074.1\|2138647_2139769_+	alanine dehydrogenase	NA	NA	NA	NA
AXQ98075.1\|2139821_2140781_-	DUF4382 domain-containing protein	NA	NA	NA	NA
AXQ98076.1\|2140920_2142816_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-17	66.7
AXQ98077.1\|2142882_2143449_+	PilZ domain-containing protein	NA	NA	NA	NA
AXQ98078.1\|2143563_2144601_+	agmatine deiminase family protein	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	2.9e-37	28.3
AXQ98079.1\|2144606_2145497_+	acyltransferase	M1I3K9	Paramecium_bursaria_Chlorella_virus	1.8e-51	39.9
AXQ98080.1\|2145513_2148987_+	transcription-repair coupling factor	NA	NA	NA	NA
AXQ98081.1\|2148983_2149808_+	hypothetical protein	NA	NA	NA	NA
AXQ98082.1\|2149820_2150069_+	DUF3862 domain-containing protein	NA	NA	NA	NA
AXQ98083.1\|2151972_2152950_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
AXQ98084.1\|2152949_2154167_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
2154513:2154528	attL	NA	NA	NA	NA
AXQ98085.1\|2155633_2157271_-	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA
AXQ98086.1\|2157284_2157833_-	replication initiation negative regulator SeqA	NA	NA	NA	NA
AXQ98087.1\|2157969_2158737_+	alpha/beta fold hydrolase	G1DB77	Mycobacterium_phage	5.2e-07	34.7
AXQ98088.1\|2158824_2159046_+	DUF2788 domain-containing protein	NA	NA	NA	NA
AXQ98089.1\|2159045_2159324_+	LexA regulated protein	NA	NA	NA	NA
AXQ98090.1\|2159338_2159866_+	flavodoxin FldA	NA	NA	NA	NA
AXQ98091.1\|2159969_2160416_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
AXQ98092.1\|2160802_2161276_-	DUF1203 domain-containing protein	NA	NA	NA	NA
AXQ98093.1\|2161363_2163190_-	serine/threonine protein kinase	NA	NA	NA	NA
AXQ98094.1\|2163246_2164911_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	7.6e-245	72.7
AXQ98095.1\|2165159_2166230_+	DUF3083 family protein	NA	NA	NA	NA
AXQ98096.1\|2166341_2166749_-	glutathione transferase	Q2LI91	Bacillus_phage	2.8e-07	32.7
AXQ98097.1\|2166850_2167777_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
AXQ98098.1\|2167773_2168526_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
AXQ98099.1\|2168702_2170352_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
AXQ98100.1\|2170436_2170916_+	acyl-CoA thioesterase	NA	NA	NA	NA
AXQ98101.1\|2170958_2172008_-	energy transducer TonB	NA	NA	NA	NA
AXQ98102.1\|2172295_2172583_-	hypothetical protein	NA	NA	NA	NA
AXQ98103.1\|2172919_2173627_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AXQ98104.1\|2173758_2175486_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
AXQ98105.1\|2175616_2176417_+	UDP-2,3-diacylglucosamine diphosphatase	A0A218MKA7	uncultured_virus	5.0e-53	44.3
AXQ98106.1\|2176439_2176733_-	hypothetical protein	NA	NA	NA	NA
AXQ98107.1\|2176888_2178037_-	hypothetical protein	NA	NA	NA	NA
AXQ98108.1\|2178192_2179401_-	ABC transporter permease	NA	NA	NA	NA
AXQ98109.1\|2179393_2180179_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-20	27.9
AXQ98110.1\|2180180_2180981_-	DUF3025 domain-containing protein	NA	NA	NA	NA
AXQ98111.1\|2183134_2184301_+	hypothetical protein	NA	NA	NA	NA
AXQ98112.1\|2184297_2184492_-	hypothetical protein	NA	NA	NA	NA
AXQ98113.1\|2184606_2184996_-	hypothetical protein	NA	NA	NA	NA
AXQ98114.1\|2186531_2187155_-	hypothetical protein	NA	NA	NA	NA
AXQ98115.1\|2187374_2188346_+\|transposase	transposase	NA	NA	NA	NA
AXQ98116.1\|2188567_2189368_-	DUF3800 domain-containing protein	NA	NA	NA	NA
AXQ98117.1\|2189438_2190536_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AXQ98118.1\|2190667_2191054_-	hypothetical protein	NA	NA	NA	NA
AXQ98119.1\|2191252_2192791_-\|transposase	transposase	NA	NA	NA	NA
AXQ98120.1\|2193018_2193348_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXQ98121.1\|2193755_2194715_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	2.7e-53	39.7
AXQ98122.1\|2194953_2195172_-	hypothetical protein	NA	NA	NA	NA
AXQ98123.1\|2195524_2196556_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXQ98124.1\|2196711_2197683_+\|transposase	transposase	NA	NA	NA	NA
2206082:2206097	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2845994 : 2888185

Vibrio_phage(26.67%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXQ98600.1\|2845994_2846210_-\|tail	phage tail protein	O80307	Escherichia_phage	6.3e-11	51.7
AXQ98601.1\|2846235_2846667_-	hypothetical protein	Q9ZXJ9	Pseudomonas_virus	1.5e-16	38.5
AXQ98602.1\|2846681_2849840_-\|tail	phage tail protein	NA	NA	NA	NA
AXQ98603.1\|2850095_2850353_-\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	3.1e-12	43.8
AXQ98604.1\|2850356_2850866_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	1.1e-34	47.9
AXQ98605.1\|2850865_2852029_-\|tail	phage tail protein	A0A1B2LRR3	Wolbachia_phage	2.3e-131	60.4
AXQ98606.1\|2852051_2852249_-	hypothetical protein	NA	NA	NA	NA
AXQ98607.1\|2852478_2852814_-\|plate	baseplate assembly protein W	Q75QM0	Wolbachia_phage	2.0e-27	50.5
AXQ99669.1\|2852823_2853021_-	hypothetical protein	D4HTV1	Vibrio_phage	1.8e-12	62.5
AXQ98608.1\|2853117_2853711_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.5e-25	40.5
AXQ98609.1\|2853707_2854286_-	hypothetical protein	NA	NA	NA	NA
AXQ98610.1\|2854362_2854578_-	hypothetical protein	E3SP38	Cyanophage	2.2e-11	48.4
AXQ98611.1\|2854580_2855258_-	hypothetical protein	NA	NA	NA	NA
AXQ98612.1\|2855267_2856020_-\|tail	phage tail protein	K7RVY3	Vibrio_phage	3.4e-43	52.5
AXQ98613.1\|2856019_2857129_-\|tail	phage tail protein I	K7R2P6	Vibrio_phage	1.5e-42	47.4
AXQ98614.1\|2857121_2858006_-\|plate	baseplate J family protein	D4HTV3	Vibrio_phage	2.5e-53	41.2
AXQ98615.1\|2858189_2858729_-	hypothetical protein	NA	NA	NA	NA
AXQ98616.1\|2858721_2859060_-	hypothetical protein	NA	NA	NA	NA
AXQ98617.1\|2862239_2862791_-\|tail	phage tail protein I	K7R2P6	Vibrio_phage	8.6e-20	35.0
AXQ98618.1\|2862787_2863693_-\|plate	baseplate J protein	D4HTV3	Vibrio_phage	1.1e-48	35.5
AXQ98619.1\|2863857_2864277_-	hypothetical protein	NA	NA	NA	NA
AXQ98620.1\|2865786_2866008_-	hypothetical protein	NA	NA	NA	NA
AXQ98621.1\|2866016_2867213_-	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	1.3e-89	45.6
AXQ98622.1\|2867209_2869174_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	5.2e-136	41.2
AXQ98623.1\|2869184_2869667_-	hypothetical protein	Q75QL7	Wolbachia_phage	1.0e-24	43.5
AXQ98624.1\|2869728_2870451_-	hypothetical protein	NA	NA	NA	NA
AXQ98625.1\|2870443_2872357_-	hypothetical protein	A0A2I7R0J0	Vibrio_phage	8.3e-54	30.5
AXQ98626.1\|2872451_2873522_-	hypothetical protein	A0A2I7R0J0	Vibrio_phage	1.6e-30	54.9
AXQ98627.1\|2873525_2874074_-	hypothetical protein	NA	NA	NA	NA
AXQ98628.1\|2874100_2875027_-\|tail	phage tail protein	K4I1F8	Acidithiobacillus_phage	4.1e-38	47.1
AXQ98629.1\|2875028_2875871_-\|plate	baseplate assembly protein	K4HZB7	Acidithiobacillus_phage	5.7e-47	43.0
AXQ98630.1\|2875879_2876248_-	hypothetical protein	NA	NA	NA	NA
AXQ98631.1\|2876250_2877009_-	hypothetical protein	NA	NA	NA	NA
AXQ98632.1\|2877010_2877547_-\|tail	phage tail protein	B0ZSG1	Halomonas_phage	9.9e-21	41.8
AXQ98633.1\|2877614_2878361_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	8.9e-20	45.2
AXQ98634.1\|2878341_2879298_-\|plate	baseplate protein	A0A088FQL4	Escherichia_phage	4.6e-53	38.2
AXQ98635.1\|2879357_2879822_-	hypothetical protein	NA	NA	NA	NA
AXQ98636.1\|2879833_2880604_-	hypothetical protein	NA	NA	NA	NA
AXQ98637.1\|2880730_2881045_-	hypothetical protein	NA	NA	NA	NA
AXQ98638.1\|2881055_2881832_-\|tail	phage tail protein	NA	NA	NA	NA
AXQ98639.1\|2881841_2882426_-\|tail	phage tail protein	B0ZSG1	Halomonas_phage	4.4e-22	38.1
AXQ98640.1\|2882592_2883489_-\|tail	phage tail protein I	M1T2R2	Escherichia_phage	1.8e-22	35.8
AXQ98641.1\|2883497_2884340_-\|plate	baseplate protein	K4HZB7	Acidithiobacillus_phage	2.2e-35	37.5
AXQ98642.1\|2884400_2884649_-	hypothetical protein	NA	NA	NA	NA
AXQ98643.1\|2884645_2885053_-	hypothetical protein	A0A1B1ITB4	uncultured_Mediterranean_phage	9.8e-21	41.4
AXQ98644.1\|2885040_2885460_-	glycoside hydrolase	A0A1Q1PW74	Pseudoalteromonas_phage	2.4e-30	52.9
AXQ98645.1\|2885480_2885843_-	hypothetical protein	NA	NA	NA	NA
AXQ98646.1\|2885817_2886096_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXQ98647.1\|2886520_2888185_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	9.5e-38	26.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031760

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

560047 : 626753

Streptococcus_phage(10.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR00113.1\|560047_561145_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AXR00114.1\|561547_562579_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.4e-10	28.6
AXR00115.1\|562859_563564_-\|transposase	transposase	NA	NA	NA	NA
AXR00116.1\|563903_564920_+	nucleoside hydrolase	NA	NA	NA	NA
AXR00117.1\|565240_567076_+	hypothetical protein	NA	NA	NA	NA
AXR00118.1\|567385_567697_-	cupin	NA	NA	NA	NA
AXR00119.1\|568098_569289_-	alpha/beta hydrolase	NA	NA	NA	NA
AXR00120.1\|569285_569510_-	hypothetical protein	NA	NA	NA	NA
AXR00121.1\|570188_570557_-	VOC family protein	NA	NA	NA	NA
AXR00122.1\|572917_574324_+	diguanylate cyclase	NA	NA	NA	NA
AXR00123.1\|574320_575649_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
AXR00124.1\|575679_576768_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXR00125.1\|576859_577672_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXR00126.1\|577751_578624_-	peptidase S1	NA	NA	NA	NA
AXR00127.1\|579022_579517_+	hypothetical protein	NA	NA	NA	NA
AXR00128.1\|579726_581157_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	4.5e-20	25.7
AXR00129.1\|581282_582296_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXR00130.1\|582560_585125_+	TonB-dependent receptor	NA	NA	NA	NA
AXR00131.1\|585194_586088_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
AXR00132.1\|586084_587098_+	HupE/UreJ family protein	NA	NA	NA	NA
AXR00133.1\|587100_588942_+	DUF3604 domain-containing protein	NA	NA	NA	NA
AXR00134.1\|588945_590010_+	alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.1e-07	24.4
AXR00135.1\|590019_591009_+	NAD-dependent epimerase/dehydratase family protein	A0A0M3ZHF0	Turkeypox_virus	9.1e-12	24.8
AXR00136.1\|591022_591526_+	2,4'-dihydroxyacetophenone dioxygenase	NA	NA	NA	NA
AXR00137.1\|591615_592071_+	hypothetical protein	NA	NA	NA	NA
AXR00138.1\|593364_594003_+	thermostable hemolysin	NA	NA	NA	NA
AXR00139.1\|593995_595471_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA
AXR00140.1\|595484_596168_+	iron-containing redox enzyme family protein	NA	NA	NA	NA
AXR00141.1\|596954_597611_+	hypothetical protein	NA	NA	NA	NA
AXR00142.1\|597607_598270_+	response regulator	NA	NA	NA	NA
AXR00143.1\|598269_599601_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.8e-21	22.6
AXR00144.1\|599587_599947_+	cupredoxin domain-containing protein	NA	NA	NA	NA
AXR00145.1\|599936_600668_+	hypothetical protein	NA	NA	NA	NA
AXR00146.1\|600657_601365_+	hypothetical protein	NA	NA	NA	NA
AXR00147.1\|601476_602307_+	alpha/beta hydrolase	NA	NA	NA	NA
AXR00148.1\|602656_602866_+	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	3.4e-17	66.1
AXR00614.1\|603522_603918_+	DUF4879 domain-containing protein	NA	NA	NA	NA
AXR00149.1\|603981_604428_-	hypothetical protein	NA	NA	NA	NA
AXR00150.1\|604594_604936_+	alkylphosphonate utilization protein	NA	NA	NA	NA
AXR00151.1\|605631_606087_-	hypothetical protein	A0A1P8DJJ6	Virus_Rctr41k	1.6e-11	32.3
AXR00152.1\|606741_608124_+	hypothetical protein	NA	NA	NA	NA
AXR00615.1\|608427_609246_+	alpha/beta hydrolase	NA	NA	NA	NA
AXR00153.1\|609360_610521_+	hypothetical protein	NA	NA	NA	NA
AXR00154.1\|610734_612273_+\|transposase	transposase	A0A146ICT8	Staphylococcus_phage	1.3e-12	23.5
AXR00155.1\|612736_613815_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.4e-42	39.4
AXR00156.1\|614340_614688_-	RidA family protein	NA	NA	NA	NA
AXR00157.1\|614864_615590_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXR00616.1\|615609_616329_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXR00158.1\|616593_617271_+	GntR family transcriptional regulator	NA	NA	NA	NA
AXR00159.1\|617285_618164_+	methylisocitrate lyase	NA	NA	NA	NA
AXR00160.1\|618242_619364_+	2-methylcitrate synthase	NA	NA	NA	NA
AXR00161.1\|619438_622033_+	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
AXR00162.1\|622035_623211_+	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
AXR00163.1\|623361_623958_+	LysE family translocator	NA	NA	NA	NA
AXR00617.1\|624150_624648_+	N-acetyltransferase	NA	NA	NA	NA
AXR00618.1\|625572_626753_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.8e-114	64.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031759

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031760

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection